Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759600 | XP_013453611.1 | 98.601 | 143 | 2 | 0 | 40 | 182 | 1 | 143 | 7.12e-95 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759600 | I3SJ84 | 98.601 | 143 | 2 | 0 | 40 | 182 | 1 | 143 | 3.40e-95 | 282 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0472960 | Msa0759600 | -0.831884 | 1.295994e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759600 | MtrunA17_Chr5g0407711 | 99.123 | 114 | 1 | 0 | 40 | 153 | 1 | 114 | 1.14e-78 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759600 | AT3G51500.1 | 50.000 | 138 | 47 | 5 | 40 | 177 | 1 | 116 | 1.39e-25 | 95.5 |
Find 44 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAAGTAGAGATGCTTTC+TGG | 0.155423 | 5_2:+15345379 | None:intergenic |
| TTCAGTCATCAAGTGTCTTT+TGG | 0.232137 | 5_2:+15345290 | None:intergenic |
| GAGGAAGATGGCTTTGTATT+AGG | 0.253421 | 5_2:-15345159 | Msa0759600:CDS |
| TTATATCGGTTACCGGTAAT+TGG | 0.266013 | 5_2:+15346512 | None:intergenic |
| AGAGGAGAAGATTGCATTGC+TGG | 0.335131 | 5_2:-15345094 | Msa0759600:CDS |
| GTTGACATGTTACCAATTAC+CGG | 0.371057 | 5_2:-15346524 | Msa0759600:intron |
| GAATCTGAATTGGAACCTTC+TGG | 0.388596 | 5_2:+15345246 | None:intergenic |
| GCTAAAAGAAGCTGAAGATC+AGG | 0.403208 | 5_2:-15345130 | Msa0759600:CDS |
| GCTCCTCTTCCGTTGAAATC+AGG | 0.411458 | 5_2:-15345324 | Msa0759600:CDS |
| TTGAAGTAGAGATGCTTTCT+GGG | 0.412709 | 5_2:+15345380 | None:intergenic |
| GTCGGGCAACGAATCTGAAT+TGG | 0.413676 | 5_2:+15345236 | None:intergenic |
| TCCTCTGACAAAGGAATCCT+TGG | 0.414586 | 5_2:+15345441 | None:intergenic |
| ATGCAATCTTCTCCTCTTCA+AGG | 0.425654 | 5_2:+15345100 | None:intergenic |
| GGAAGGCCTTGTTGATCCCT+TGG | 0.442315 | 5_2:-15345055 | Msa0759600:CDS |
| GGAAATATTGTCAAGGGAGG+GGG | 0.456451 | 5_2:-15345351 | Msa0759600:CDS |
| GAACCTTCTGGTCTCTGAAA+AGG | 0.466094 | 5_2:+15345258 | None:intergenic |
| TTTCCACCCGCAGAGGAGTC+GGG | 0.472445 | 5_2:+15345219 | None:intergenic |
| AATACTTCCGCCTCAATTGA+CGG | 0.473041 | 5_2:+15345190 | None:intergenic |
| CTCAATATCTCCTCTGACAA+AGG | 0.476118 | 5_2:+15345432 | None:intergenic |
| TGTCCTGATTTCAACGGAAG+AGG | 0.492333 | 5_2:+15345321 | None:intergenic |
| ATTTCCACCCGCAGAGGAGT+CGG | 0.498474 | 5_2:+15345218 | None:intergenic |
| GCTGGATCAACTTGTTGTAA+TGG | 0.502973 | 5_2:-15345076 | Msa0759600:CDS |
| AGGAAATATTGTCAAGGGAG+GGG | 0.510018 | 5_2:-15345352 | Msa0759600:CDS |
| GAGGCGGAAGTATTTGCAGC+TGG | 0.549105 | 5_2:-15345181 | Msa0759600:CDS |
| ACACTATGAGCGAATCTCCA+AGG | 0.573497 | 5_2:+15345038 | None:intergenic |
| GAAATGAATACCGTCAATTG+AGG | 0.576227 | 5_2:-15345200 | Msa0759600:CDS |
| TATTTGCAGCTGGAGGAAGA+TGG | 0.578348 | 5_2:-15345171 | Msa0759600:CDS |
| TGCAATCTTCTCCTCTTCAA+GGG | 0.582806 | 5_2:+15345101 | None:intergenic |
| CCTTCTGGTCTCTGAAAAGG+TGG | 0.583162 | 5_2:+15345261 | None:intergenic |
| TTCGTTGCCCGACTCCTCTG+CGG | 0.588076 | 5_2:-15345226 | Msa0759600:CDS |
| TCAGGTAAAGACCCTTGAAG+AGG | 0.601213 | 5_2:-15345112 | Msa0759600:CDS |
| GGTGAGAAATGCAAGATCCA+AGG | 0.602347 | 5_2:-15345458 | Msa0759600:intron |
| TCCAAGGATTCCTTTGTCAG+AGG | 0.602608 | 5_2:-15345442 | Msa0759600:CDS |
| CACTATGAGCGAATCTCCAA+GGG | 0.604058 | 5_2:+15345039 | None:intergenic |
| CTGCAAGGAAATATTGTCAA+GGG | 0.605688 | 5_2:-15345357 | Msa0759600:CDS |
| AAGGAAATATTGTCAAGGGA+GGG | 0.608332 | 5_2:-15345353 | Msa0759600:CDS |
| GATCAACTTGTTGTAATGGA+AGG | 0.608527 | 5_2:-15345072 | Msa0759600:CDS |
| ACTGCAAGGAAATATTGTCA+AGG | 0.612756 | 5_2:-15345358 | Msa0759600:CDS |
| CAAGGAAATATTGTCAAGGG+AGG | 0.627083 | 5_2:-15345354 | Msa0759600:CDS |
| GCATCTCTACTTCAACTGCA+AGG | 0.630440 | 5_2:-15345372 | Msa0759600:CDS |
| ATGAATACCGTCAATTGAGG+CGG | 0.653058 | 5_2:-15345197 | Msa0759600:CDS |
| GCGGAAGTATTTGCAGCTGG+AGG | 0.666953 | 5_2:-15345178 | Msa0759600:CDS |
| GTATTCATTTCCACCCGCAG+AGG | 0.686415 | 5_2:+15345212 | None:intergenic |
| GAATCTCCAAGGGATCAACA+AGG | 0.729425 | 5_2:+15345049 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGAAACTCTAAAATT+GGG | + | chr5_2:15345352-15345371 | None:intergenic | 15.0% |
| !!! | AAAAATTGAAACTCTAAAAT+TGG | + | chr5_2:15345353-15345372 | None:intergenic | 15.0% |
| !!! | AATTTTTTGCTTTTTTCAAT+TGG | - | chr5_2:15345409-15345428 | Msa0759600:CDS | 15.0% |
| !!! | ATTTTTTGCTTTTTTCAATT+GGG | - | chr5_2:15345410-15345429 | Msa0759600:CDS | 15.0% |
| !!! | AAAATTGAAACTCTAAAATT+GGG | + | chr5_2:15345352-15345371 | None:intergenic | 15.0% |
| !!! | AAAAATTGAAACTCTAAAAT+TGG | + | chr5_2:15345353-15345372 | None:intergenic | 15.0% |
| !!! | AATTTTTTGCTTTTTTCAAT+TGG | - | chr5_2:15345409-15345428 | Msa0759600:CDS | 15.0% |
| !!! | ATTTTTTGCTTTTTTCAATT+GGG | - | chr5_2:15345410-15345429 | Msa0759600:CDS | 15.0% |
| !!! | AAATTGAAACTCTAAAATTG+GGG | + | chr5_2:15345351-15345370 | None:intergenic | 20.0% |
| !! | ATTTAATGTTCATGATTAGA+AGG | - | chr5_2:15345483-15345502 | Msa0759600:intron | 20.0% |
| !! | TTTAATGTTCATGATTAGAA+GGG | - | chr5_2:15345484-15345503 | Msa0759600:intron | 20.0% |
| !!! | CTTATTCTATAACTTGTTTA+TGG | + | chr5_2:15345640-15345659 | None:intergenic | 20.0% |
| !!! | ATAAGTTGAAAATACCTTAT+CGG | - | chr5_2:15345778-15345797 | Msa0759600:intron | 20.0% |
| !!! | AAATTGAAACTCTAAAATTG+GGG | + | chr5_2:15345351-15345370 | None:intergenic | 20.0% |
| !! | ATTTAATGTTCATGATTAGA+AGG | - | chr5_2:15345483-15345502 | Msa0759600:intron | 20.0% |
| !! | TTTAATGTTCATGATTAGAA+GGG | - | chr5_2:15345484-15345503 | Msa0759600:intron | 20.0% |
| !!! | CTTATTCTATAACTTGTTTA+TGG | + | chr5_2:15345640-15345659 | None:intergenic | 20.0% |
| !!! | ATAAGTTGAAAATACCTTAT+CGG | - | chr5_2:15345778-15345797 | Msa0759600:intron | 20.0% |
| !! | CGTTCATAGTTAAACTTTTA+TGG | + | chr5_2:15345097-15345116 | None:intergenic | 25.0% |
| !!! | TCCTTTTGTTTTGCTTATAT+CGG | + | chr5_2:15345154-15345173 | None:intergenic | 25.0% |
| ! | GTGAAAGAGAAAGAAAATTA+GGG | + | chr5_2:15345206-15345225 | None:intergenic | 25.0% |
| !!! | AATTGAAACTCTAAAATTGG+GGG | + | chr5_2:15345350-15345369 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTTGTATCCAGA+AGG | - | chr5_2:15345363-15345382 | Msa0759600:CDS | 25.0% |
| !!! | GAACTGAAATTCTTAGTTTT+AGG | - | chr5_2:15345606-15345625 | Msa0759600:intron | 25.0% |
| !!! | ATAACTTGTTTATGGAAACA+GGG | + | chr5_2:15345632-15345651 | None:intergenic | 25.0% |
| !!! | TATAACTTGTTTATGGAAAC+AGG | + | chr5_2:15345633-15345652 | None:intergenic | 25.0% |
| ! | TAGCTTATTCATTTCATAAG+CGG | + | chr5_2:15345670-15345689 | None:intergenic | 25.0% |
| ! | TTGCTTATAGTTTATGAGAT+AGG | + | chr5_2:15345726-15345745 | None:intergenic | 25.0% |
| !! | CGTTCATAGTTAAACTTTTA+TGG | + | chr5_2:15345097-15345116 | None:intergenic | 25.0% |
| !!! | TCCTTTTGTTTTGCTTATAT+CGG | + | chr5_2:15345154-15345173 | None:intergenic | 25.0% |
| ! | GTGAAAGAGAAAGAAAATTA+GGG | + | chr5_2:15345206-15345225 | None:intergenic | 25.0% |
| !!! | AATTGAAACTCTAAAATTGG+GGG | + | chr5_2:15345350-15345369 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTTGTATCCAGA+AGG | - | chr5_2:15345363-15345382 | Msa0759600:CDS | 25.0% |
| !!! | GAACTGAAATTCTTAGTTTT+AGG | - | chr5_2:15345606-15345625 | Msa0759600:intron | 25.0% |
| !!! | ATAACTTGTTTATGGAAACA+GGG | + | chr5_2:15345632-15345651 | None:intergenic | 25.0% |
| !!! | TATAACTTGTTTATGGAAAC+AGG | + | chr5_2:15345633-15345652 | None:intergenic | 25.0% |
| ! | TAGCTTATTCATTTCATAAG+CGG | + | chr5_2:15345670-15345689 | None:intergenic | 25.0% |
| ! | TTGCTTATAGTTTATGAGAT+AGG | + | chr5_2:15345726-15345745 | None:intergenic | 25.0% |
| ACCGATATAAGCAAAACAAA+AGG | - | chr5_2:15345150-15345169 | Msa0759600:CDS | 30.0% | |
| GGTGAAAGAGAAAGAAAATT+AGG | + | chr5_2:15345207-15345226 | None:intergenic | 30.0% | |
| AAACCTTGAGAAAGTAATTG+AGG | + | chr5_2:15345281-15345300 | None:intergenic | 30.0% | |
| !! | CTTATTTTCATAAGCTATCC+AGG | + | chr5_2:15345763-15345782 | None:intergenic | 30.0% |
| CAACTTATAACATTCCGATA+AGG | + | chr5_2:15345795-15345814 | None:intergenic | 30.0% | |
| TACTAAGGGTCTCTTTAAAT+TGG | + | chr5_2:15345880-15345899 | None:intergenic | 30.0% | |
| ACAGCACTGTTATATACTAA+GGG | + | chr5_2:15345894-15345913 | None:intergenic | 30.0% | |
| AACAGCACTGTTATATACTA+AGG | + | chr5_2:15345895-15345914 | None:intergenic | 30.0% | |
| ACTTTGCACTAAATAGCATA+TGG | + | chr5_2:15345957-15345976 | None:intergenic | 30.0% | |
| ! | TTTTATTCTGCAGTGACTAT+TGG | - | chr5_2:15346170-15346189 | Msa0759600:intron | 30.0% |
| ! | GTTGAGTTTTTCTTCTTCTT+TGG | + | chr5_2:15346250-15346269 | None:intergenic | 30.0% |
| ! | TTTTTGTGTCCTGATTTCAA+CGG | + | chr5_2:15346337-15346356 | None:intergenic | 30.0% |
| ACCGATATAAGCAAAACAAA+AGG | - | chr5_2:15345150-15345169 | Msa0759600:CDS | 30.0% | |
| GGTGAAAGAGAAAGAAAATT+AGG | + | chr5_2:15345207-15345226 | None:intergenic | 30.0% | |
| AAACCTTGAGAAAGTAATTG+AGG | + | chr5_2:15345281-15345300 | None:intergenic | 30.0% | |
| !! | CTTATTTTCATAAGCTATCC+AGG | + | chr5_2:15345763-15345782 | None:intergenic | 30.0% |
| CAACTTATAACATTCCGATA+AGG | + | chr5_2:15345795-15345814 | None:intergenic | 30.0% | |
| TACTAAGGGTCTCTTTAAAT+TGG | + | chr5_2:15345880-15345899 | None:intergenic | 30.0% | |
| ACAGCACTGTTATATACTAA+GGG | + | chr5_2:15345894-15345913 | None:intergenic | 30.0% | |
| AACAGCACTGTTATATACTA+AGG | + | chr5_2:15345895-15345914 | None:intergenic | 30.0% | |
| ACTTTGCACTAAATAGCATA+TGG | + | chr5_2:15345957-15345976 | None:intergenic | 30.0% | |
| ! | TTTTATTCTGCAGTGACTAT+TGG | - | chr5_2:15346170-15346189 | Msa0759600:intron | 30.0% |
| ! | GTTGAGTTTTTCTTCTTCTT+TGG | + | chr5_2:15346250-15346269 | None:intergenic | 30.0% |
| ! | TTTTTGTGTCCTGATTTCAA+CGG | + | chr5_2:15346337-15346356 | None:intergenic | 30.0% |
| GTTGACATGTTACCAATTAC+CGG | - | chr5_2:15345125-15345144 | Msa0759600:CDS | 35.0% | |
| ! | TTATATCGGTTACCGGTAAT+TGG | + | chr5_2:15345140-15345159 | None:intergenic | 35.0% |
| !! | GTTTTGCTTATATCGGTTAC+CGG | + | chr5_2:15345147-15345166 | None:intergenic | 35.0% |
| AGGGTTCATGTGAAGATAAA+GGG | + | chr5_2:15345187-15345206 | None:intergenic | 35.0% | |
| TAGGGTTCATGTGAAGATAA+AGG | + | chr5_2:15345188-15345207 | None:intergenic | 35.0% | |
| ACCTTCGAACAAGATTTCAA+GGG | - | chr5_2:15345224-15345243 | Msa0759600:CDS | 35.0% | |
| ACACCTCAATTACTTTCTCA+AGG | - | chr5_2:15345275-15345294 | Msa0759600:CDS | 35.0% | |
| ACGAAATTCAAAAAGCCTTC+TGG | + | chr5_2:15345381-15345400 | None:intergenic | 35.0% | |
| TTCATGATTAGAAGGGTTGT+TGG | - | chr5_2:15345491-15345510 | Msa0759600:intron | 35.0% | |
| TCATGATTAGAAGGGTTGTT+GGG | - | chr5_2:15345492-15345511 | Msa0759600:intron | 35.0% | |
| GCTTTCAATCAAACATACAG+TGG | - | chr5_2:15345535-15345554 | Msa0759600:intron | 35.0% | |
| ! | GCAATTTTCATAAGTTGTCC+TGG | - | chr5_2:15345742-15345761 | Msa0759600:intron | 35.0% |
| TTGCACTAAATAGCATATGG+CGG | + | chr5_2:15345954-15345973 | None:intergenic | 35.0% | |
| !! | TGCAAAGTGTTGTCAAATAG+AGG | - | chr5_2:15345969-15345988 | Msa0759600:intron | 35.0% |
| TTGTCAAATAGAGGCTATTG+TGG | - | chr5_2:15345978-15345997 | Msa0759600:intron | 35.0% | |
| ATATATCAGTGCTCTCAACT+GGG | + | chr5_2:15346062-15346081 | None:intergenic | 35.0% | |
| TATATATCAGTGCTCTCAAC+TGG | + | chr5_2:15346063-15346082 | None:intergenic | 35.0% | |
| TTGAAGTAGAGATGCTTTCT+GGG | + | chr5_2:15346272-15346291 | None:intergenic | 35.0% | |
| ACTGCAAGGAAATATTGTCA+AGG | - | chr5_2:15346291-15346310 | Msa0759600:intron | 35.0% | |
| CTGCAAGGAAATATTGTCAA+GGG | - | chr5_2:15346292-15346311 | Msa0759600:intron | 35.0% | |
| AAGGAAATATTGTCAAGGGA+GGG | - | chr5_2:15346296-15346315 | Msa0759600:intron | 35.0% | |
| ! | TTCAGTCATCAAGTGTCTTT+TGG | + | chr5_2:15346362-15346381 | None:intergenic | 35.0% |
| GAAATGAATACCGTCAATTG+AGG | - | chr5_2:15346449-15346468 | Msa0759600:intron | 35.0% | |
| !! | GATCAACTTGTTGTAATGGA+AGG | - | chr5_2:15346577-15346596 | Msa0759600:CDS | 35.0% |
| GTTGACATGTTACCAATTAC+CGG | - | chr5_2:15345125-15345144 | Msa0759600:CDS | 35.0% | |
| ! | TTATATCGGTTACCGGTAAT+TGG | + | chr5_2:15345140-15345159 | None:intergenic | 35.0% |
| !! | GTTTTGCTTATATCGGTTAC+CGG | + | chr5_2:15345147-15345166 | None:intergenic | 35.0% |
| AGGGTTCATGTGAAGATAAA+GGG | + | chr5_2:15345187-15345206 | None:intergenic | 35.0% | |
| TAGGGTTCATGTGAAGATAA+AGG | + | chr5_2:15345188-15345207 | None:intergenic | 35.0% | |
| ACCTTCGAACAAGATTTCAA+GGG | - | chr5_2:15345224-15345243 | Msa0759600:CDS | 35.0% | |
| ACACCTCAATTACTTTCTCA+AGG | - | chr5_2:15345275-15345294 | Msa0759600:CDS | 35.0% | |
| ACGAAATTCAAAAAGCCTTC+TGG | + | chr5_2:15345381-15345400 | None:intergenic | 35.0% | |
| TTCATGATTAGAAGGGTTGT+TGG | - | chr5_2:15345491-15345510 | Msa0759600:intron | 35.0% | |
| TCATGATTAGAAGGGTTGTT+GGG | - | chr5_2:15345492-15345511 | Msa0759600:intron | 35.0% | |
| GCTTTCAATCAAACATACAG+TGG | - | chr5_2:15345535-15345554 | Msa0759600:intron | 35.0% | |
| ! | GCAATTTTCATAAGTTGTCC+TGG | - | chr5_2:15345742-15345761 | Msa0759600:intron | 35.0% |
| TTGCACTAAATAGCATATGG+CGG | + | chr5_2:15345954-15345973 | None:intergenic | 35.0% | |
| !! | TGCAAAGTGTTGTCAAATAG+AGG | - | chr5_2:15345969-15345988 | Msa0759600:intron | 35.0% |
| TTGTCAAATAGAGGCTATTG+TGG | - | chr5_2:15345978-15345997 | Msa0759600:intron | 35.0% | |
| ATATATCAGTGCTCTCAACT+GGG | + | chr5_2:15346062-15346081 | None:intergenic | 35.0% | |
| TATATATCAGTGCTCTCAAC+TGG | + | chr5_2:15346063-15346082 | None:intergenic | 35.0% | |
| TTGAAGTAGAGATGCTTTCT+GGG | + | chr5_2:15346272-15346291 | None:intergenic | 35.0% | |
| ACTGCAAGGAAATATTGTCA+AGG | - | chr5_2:15346291-15346310 | Msa0759600:intron | 35.0% | |
| CTGCAAGGAAATATTGTCAA+GGG | - | chr5_2:15346292-15346311 | Msa0759600:intron | 35.0% | |
| AAGGAAATATTGTCAAGGGA+GGG | - | chr5_2:15346296-15346315 | Msa0759600:intron | 35.0% | |
| ! | TTCAGTCATCAAGTGTCTTT+TGG | + | chr5_2:15346362-15346381 | None:intergenic | 35.0% |
| GAAATGAATACCGTCAATTG+AGG | - | chr5_2:15346449-15346468 | Msa0759600:intron | 35.0% | |
| !! | GATCAACTTGTTGTAATGGA+AGG | - | chr5_2:15346577-15346596 | Msa0759600:CDS | 35.0% |
| CACCTTCGAACAAGATTTCA+AGG | - | chr5_2:15345223-15345242 | Msa0759600:CDS | 40.0% | |
| ACCCTTGAAATCTTGTTCGA+AGG | + | chr5_2:15345228-15345247 | None:intergenic | 40.0% | |
| ! | GTAATTGAGGTGTTCGCAAT+TGG | + | chr5_2:15345268-15345287 | None:intergenic | 40.0% |
| AAATTGGGGGTGAAATTGAG+AGG | + | chr5_2:15345337-15345356 | None:intergenic | 40.0% | |
| AATCAAACATACAGTGGTGC+TGG | - | chr5_2:15345541-15345560 | Msa0759600:intron | 40.0% | |
| AAGTGCTCATGTCAGTAGAT+AGG | - | chr5_2:15345844-15345863 | Msa0759600:intron | 40.0% | |
| TCAAATAGAGGCTATTGTGG+CGG | - | chr5_2:15345981-15346000 | Msa0759600:intron | 40.0% | |
| CTCAATATCTCCTCTGACAA+AGG | + | chr5_2:15346220-15346239 | None:intergenic | 40.0% | |
| GTTGAAGTAGAGATGCTTTC+TGG | + | chr5_2:15346273-15346292 | None:intergenic | 40.0% | |
| CAAGGAAATATTGTCAAGGG+AGG | - | chr5_2:15346295-15346314 | Msa0759600:intron | 40.0% | |
| AGGAAATATTGTCAAGGGAG+GGG | - | chr5_2:15346297-15346316 | Msa0759600:intron | 40.0% | |
| GAATCTGAATTGGAACCTTC+TGG | + | chr5_2:15346406-15346425 | None:intergenic | 40.0% | |
| ATGAATACCGTCAATTGAGG+CGG | - | chr5_2:15346452-15346471 | Msa0759600:intron | 40.0% | |
| AATACTTCCGCCTCAATTGA+CGG | + | chr5_2:15346462-15346481 | None:intergenic | 40.0% | |
| !! | GAGGAAGATGGCTTTGTATT+AGG | - | chr5_2:15346490-15346509 | Msa0759600:intron | 40.0% |
| GCTAAAAGAAGCTGAAGATC+AGG | - | chr5_2:15346519-15346538 | Msa0759600:intron | 40.0% | |
| TGCAATCTTCTCCTCTTCAA+GGG | + | chr5_2:15346551-15346570 | None:intergenic | 40.0% | |
| ATGCAATCTTCTCCTCTTCA+AGG | + | chr5_2:15346552-15346571 | None:intergenic | 40.0% | |
| !! | GCTGGATCAACTTGTTGTAA+TGG | - | chr5_2:15346573-15346592 | Msa0759600:CDS | 40.0% |
| CACCTTCGAACAAGATTTCA+AGG | - | chr5_2:15345223-15345242 | Msa0759600:CDS | 40.0% | |
| ACCCTTGAAATCTTGTTCGA+AGG | + | chr5_2:15345228-15345247 | None:intergenic | 40.0% | |
| ! | GTAATTGAGGTGTTCGCAAT+TGG | + | chr5_2:15345268-15345287 | None:intergenic | 40.0% |
| AAATTGGGGGTGAAATTGAG+AGG | + | chr5_2:15345337-15345356 | None:intergenic | 40.0% | |
| AATCAAACATACAGTGGTGC+TGG | - | chr5_2:15345541-15345560 | Msa0759600:intron | 40.0% | |
| AAGTGCTCATGTCAGTAGAT+AGG | - | chr5_2:15345844-15345863 | Msa0759600:intron | 40.0% | |
| TCAAATAGAGGCTATTGTGG+CGG | - | chr5_2:15345981-15346000 | Msa0759600:intron | 40.0% | |
| CTCAATATCTCCTCTGACAA+AGG | + | chr5_2:15346220-15346239 | None:intergenic | 40.0% | |
| GTTGAAGTAGAGATGCTTTC+TGG | + | chr5_2:15346273-15346292 | None:intergenic | 40.0% | |
| CAAGGAAATATTGTCAAGGG+AGG | - | chr5_2:15346295-15346314 | Msa0759600:intron | 40.0% | |
| AGGAAATATTGTCAAGGGAG+GGG | - | chr5_2:15346297-15346316 | Msa0759600:intron | 40.0% | |
| GAATCTGAATTGGAACCTTC+TGG | + | chr5_2:15346406-15346425 | None:intergenic | 40.0% | |
| ATGAATACCGTCAATTGAGG+CGG | - | chr5_2:15346452-15346471 | Msa0759600:intron | 40.0% | |
| AATACTTCCGCCTCAATTGA+CGG | + | chr5_2:15346462-15346481 | None:intergenic | 40.0% | |
| !! | GAGGAAGATGGCTTTGTATT+AGG | - | chr5_2:15346490-15346509 | Msa0759600:intron | 40.0% |
| GCTAAAAGAAGCTGAAGATC+AGG | - | chr5_2:15346519-15346538 | Msa0759600:intron | 40.0% | |
| TGCAATCTTCTCCTCTTCAA+GGG | + | chr5_2:15346551-15346570 | None:intergenic | 40.0% | |
| ATGCAATCTTCTCCTCTTCA+AGG | + | chr5_2:15346552-15346571 | None:intergenic | 40.0% | |
| !! | GCTGGATCAACTTGTTGTAA+TGG | - | chr5_2:15346573-15346592 | Msa0759600:CDS | 40.0% |
| ! | GAGGTGTTCGCAATTGGAAA+CGG | + | chr5_2:15345262-15345281 | None:intergenic | 45.0% |
| ATGGTGAAGAAAGAGGGGAA+TGG | + | chr5_2:15345310-15345329 | None:intergenic | 45.0% | |
| GAAGCATGGTGAAGAAAGAG+GGG | + | chr5_2:15345315-15345334 | None:intergenic | 45.0% | |
| ! | GGAAGCATGGTGAAGAAAGA+GGG | + | chr5_2:15345316-15345335 | None:intergenic | 45.0% |
| ! | AGGAAGCATGGTGAAGAAAG+AGG | + | chr5_2:15345317-15345336 | None:intergenic | 45.0% |
| GGTGAAATTGAGAGGAAGCA+TGG | + | chr5_2:15345329-15345348 | None:intergenic | 45.0% | |
| GGTGAGAAATGCAAGATCCA+AGG | - | chr5_2:15346191-15346210 | Msa0759600:intron | 45.0% | |
| TCCAAGGATTCCTTTGTCAG+AGG | - | chr5_2:15346207-15346226 | Msa0759600:intron | 45.0% | |
| TCCTCTGACAAAGGAATCCT+TGG | + | chr5_2:15346211-15346230 | None:intergenic | 45.0% | |
| GCATCTCTACTTCAACTGCA+AGG | - | chr5_2:15346277-15346296 | Msa0759600:intron | 45.0% | |
| GGAAATATTGTCAAGGGAGG+GGG | - | chr5_2:15346298-15346317 | Msa0759600:intron | 45.0% | |
| TGTCCTGATTTCAACGGAAG+AGG | + | chr5_2:15346331-15346350 | None:intergenic | 45.0% | |
| ! | GAACCTTCTGGTCTCTGAAA+AGG | + | chr5_2:15346394-15346413 | None:intergenic | 45.0% |
| TATTTGCAGCTGGAGGAAGA+TGG | - | chr5_2:15346478-15346497 | Msa0759600:intron | 45.0% | |
| TCAGGTAAAGACCCTTGAAG+AGG | - | chr5_2:15346537-15346556 | Msa0759600:CDS | 45.0% | |
| AGAGGAGAAGATTGCATTGC+TGG | - | chr5_2:15346555-15346574 | Msa0759600:CDS | 45.0% | |
| GAATCTCCAAGGGATCAACA+AGG | + | chr5_2:15346603-15346622 | None:intergenic | 45.0% | |
| ! | GAGGTGTTCGCAATTGGAAA+CGG | + | chr5_2:15345262-15345281 | None:intergenic | 45.0% |
| ATGGTGAAGAAAGAGGGGAA+TGG | + | chr5_2:15345310-15345329 | None:intergenic | 45.0% | |
| GAAGCATGGTGAAGAAAGAG+GGG | + | chr5_2:15345315-15345334 | None:intergenic | 45.0% | |
| ! | GGAAGCATGGTGAAGAAAGA+GGG | + | chr5_2:15345316-15345335 | None:intergenic | 45.0% |
| ! | AGGAAGCATGGTGAAGAAAG+AGG | + | chr5_2:15345317-15345336 | None:intergenic | 45.0% |
| GGTGAAATTGAGAGGAAGCA+TGG | + | chr5_2:15345329-15345348 | None:intergenic | 45.0% | |
| GGTGAGAAATGCAAGATCCA+AGG | - | chr5_2:15346191-15346210 | Msa0759600:intron | 45.0% | |
| TCCAAGGATTCCTTTGTCAG+AGG | - | chr5_2:15346207-15346226 | Msa0759600:intron | 45.0% | |
| TCCTCTGACAAAGGAATCCT+TGG | + | chr5_2:15346211-15346230 | None:intergenic | 45.0% | |
| GCATCTCTACTTCAACTGCA+AGG | - | chr5_2:15346277-15346296 | Msa0759600:intron | 45.0% | |
| GGAAATATTGTCAAGGGAGG+GGG | - | chr5_2:15346298-15346317 | Msa0759600:intron | 45.0% | |
| TGTCCTGATTTCAACGGAAG+AGG | + | chr5_2:15346331-15346350 | None:intergenic | 45.0% | |
| ! | GAACCTTCTGGTCTCTGAAA+AGG | + | chr5_2:15346394-15346413 | None:intergenic | 45.0% |
| TATTTGCAGCTGGAGGAAGA+TGG | - | chr5_2:15346478-15346497 | Msa0759600:intron | 45.0% | |
| TCAGGTAAAGACCCTTGAAG+AGG | - | chr5_2:15346537-15346556 | Msa0759600:CDS | 45.0% | |
| AGAGGAGAAGATTGCATTGC+TGG | - | chr5_2:15346555-15346574 | Msa0759600:CDS | 45.0% | |
| GAATCTCCAAGGGATCAACA+AGG | + | chr5_2:15346603-15346622 | None:intergenic | 45.0% | |
| ! | CAAACATACAGTGGTGCTGG+TGG | - | chr5_2:15345544-15345563 | Msa0759600:intron | 50.0% |
| GCTCCTCTTCCGTTGAAATC+AGG | - | chr5_2:15346325-15346344 | Msa0759600:intron | 50.0% | |
| ! | CCTTCTGGTCTCTGAAAAGG+TGG | + | chr5_2:15346391-15346410 | None:intergenic | 50.0% |
| ! | CCACCTTTTCAGAGACCAGA+AGG | - | chr5_2:15346388-15346407 | Msa0759600:intron | 50.0% |
| GTCGGGCAACGAATCTGAAT+TGG | + | chr5_2:15346416-15346435 | None:intergenic | 50.0% | |
| GTATTCATTTCCACCCGCAG+AGG | + | chr5_2:15346440-15346459 | None:intergenic | 50.0% | |
| ! | CAAACATACAGTGGTGCTGG+TGG | - | chr5_2:15345544-15345563 | Msa0759600:intron | 50.0% |
| GCTCCTCTTCCGTTGAAATC+AGG | - | chr5_2:15346325-15346344 | Msa0759600:intron | 50.0% | |
| ! | CCTTCTGGTCTCTGAAAAGG+TGG | + | chr5_2:15346391-15346410 | None:intergenic | 50.0% |
| ! | CCACCTTTTCAGAGACCAGA+AGG | - | chr5_2:15346388-15346407 | Msa0759600:intron | 50.0% |
| GTCGGGCAACGAATCTGAAT+TGG | + | chr5_2:15346416-15346435 | None:intergenic | 50.0% | |
| GTATTCATTTCCACCCGCAG+AGG | + | chr5_2:15346440-15346459 | None:intergenic | 50.0% | |
| !! | ACATACAGTGGTGCTGGTGG+CGG | - | chr5_2:15345547-15345566 | Msa0759600:intron | 55.0% |
| TATTGTCAAGGGAGGGGGAC+AGG | - | chr5_2:15346303-15346322 | Msa0759600:intron | 55.0% | |
| ATTTCCACCCGCAGAGGAGT+CGG | + | chr5_2:15346434-15346453 | None:intergenic | 55.0% | |
| !! | GAGGCGGAAGTATTTGCAGC+TGG | - | chr5_2:15346468-15346487 | Msa0759600:intron | 55.0% |
| !! | GCGGAAGTATTTGCAGCTGG+AGG | - | chr5_2:15346471-15346490 | Msa0759600:intron | 55.0% |
| !! | GGAAGGCCTTGTTGATCCCT+TGG | - | chr5_2:15346594-15346613 | Msa0759600:CDS | 55.0% |
| !! | ACATACAGTGGTGCTGGTGG+CGG | - | chr5_2:15345547-15345566 | Msa0759600:intron | 55.0% |
| TATTGTCAAGGGAGGGGGAC+AGG | - | chr5_2:15346303-15346322 | Msa0759600:intron | 55.0% | |
| ATTTCCACCCGCAGAGGAGT+CGG | + | chr5_2:15346434-15346453 | None:intergenic | 55.0% | |
| !! | GAGGCGGAAGTATTTGCAGC+TGG | - | chr5_2:15346468-15346487 | Msa0759600:intron | 55.0% |
| !! | GCGGAAGTATTTGCAGCTGG+AGG | - | chr5_2:15346471-15346490 | Msa0759600:intron | 55.0% |
| !! | GGAAGGCCTTGTTGATCCCT+TGG | - | chr5_2:15346594-15346613 | Msa0759600:CDS | 55.0% |
| TTCGTTGCCCGACTCCTCTG+CGG | - | chr5_2:15346423-15346442 | Msa0759600:intron | 60.0% | |
| TTTCCACCCGCAGAGGAGTC+GGG | + | chr5_2:15346433-15346452 | None:intergenic | 60.0% | |
| TTCGTTGCCCGACTCCTCTG+CGG | - | chr5_2:15346423-15346442 | Msa0759600:intron | 60.0% | |
| TTTCCACCCGCAGAGGAGTC+GGG | + | chr5_2:15346433-15346452 | None:intergenic | 60.0% | |
| TCGTTGCCCGACTCCTCTGC+GGG | - | chr5_2:15346424-15346443 | Msa0759600:intron | 65.0% | |
| TCGTTGCCCGACTCCTCTGC+GGG | - | chr5_2:15346424-15346443 | Msa0759600:intron | 65.0% | |
| TTGCCCGACTCCTCTGCGGG+TGG | - | chr5_2:15346427-15346446 | Msa0759600:intron | 70.0% | |
| TTGCCCGACTCCTCTGCGGG+TGG | - | chr5_2:15346427-15346446 | Msa0759600:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 15345041 | 15346630 | 15345041 | ID=Msa0759600;Name=Msa0759600 |
| chr5_2 | mRNA | 15345041 | 15346630 | 15345041 | ID=Msa0759600-mRNA-1;Parent=Msa0759600;Name=Msa0759600-mRNA-1;_AED=0.35;_eAED=0.40;_QI=0|0|0|1|0|0|3|0|182 |
| chr5_2 | exon | 15346525 | 15346630 | 15346525 | ID=Msa0759600-mRNA-1:exon:6978;Parent=Msa0759600-mRNA-1 |
| chr5_2 | exon | 15345480 | 15345488 | 15345480 | ID=Msa0759600-mRNA-1:exon:6977;Parent=Msa0759600-mRNA-1 |
| chr5_2 | exon | 15345041 | 15345474 | 15345041 | ID=Msa0759600-mRNA-1:exon:6976;Parent=Msa0759600-mRNA-1 |
| chr5_2 | CDS | 15346525 | 15346630 | 15346525 | ID=Msa0759600-mRNA-1:cds;Parent=Msa0759600-mRNA-1 |
| chr5_2 | CDS | 15345480 | 15345488 | 15345480 | ID=Msa0759600-mRNA-1:cds;Parent=Msa0759600-mRNA-1 |
| chr5_2 | CDS | 15345041 | 15345474 | 15345041 | ID=Msa0759600-mRNA-1:cds;Parent=Msa0759600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
