AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472960 MtrunA17_Chr3g0128541 97.708 349 8 0 1 349 1 349 0.0 706
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472960 AT2G40800.1 62.865 342 116 3 12 347 41 377 2.60e-142 408
Msa0472960 AT3G56430.1 56.369 369 115 6 12 343 74 433 3.25e-136 395
Msa0472960 AT2G40800.2 57.087 254 98 3 12 259 41 289 3.53e-93 280

Find 132 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCTATAAACTTTATC+AGG 0.141587 3_3:+75437636 None:intergenic
AAGGAAGAGAGGATGGATTT+AGG 0.151084 3_3:+75438976 None:intergenic
CGACTGGGAGGGTGGAAAAT+TGG 0.172637 3_3:+75438940 None:intergenic
TTTCTTCTCTTGTTGATTAC+AGG 0.214087 3_3:-75434875 Msa0472960:three_prime_UTR
AGGAAGAGAGGATGGATTTA+GGG 0.234938 3_3:+75438977 None:intergenic
TTGTTCTTTGTGCTATTCTT+TGG 0.247047 3_3:-75438732 Msa0472960:CDS
GACTGGGAGGGTGGAAAATT+GGG 0.256416 3_3:+75438941 None:intergenic
ATCAAGATCATCAAATTCTT+TGG 0.261593 3_3:+75435021 None:intergenic
GTTGATGTTCCCATGGCTTC+TGG 0.275349 3_3:-75435148 Msa0472960:CDS
CAGCAGCACCAAACAGAAAA+AGG 0.308344 3_3:+75438758 None:intergenic
TCTGAAGGCATGGCTAAGTA+TGG 0.317661 3_3:-75438670 Msa0472960:CDS
AACCTCCTGACGCTCTCTTT+TGG 0.326013 3_3:+75434976 None:intergenic
ATCAGATACAAACGCTGGTC+TGG 0.340990 3_3:+75435124 None:intergenic
TGCTCAGATTCTTGAAGTTA+TGG 0.348723 3_3:-75437592 Msa0472960:CDS
AGAAAATCAAGCCAAGTCTT+AGG 0.350882 3_3:-75437506 Msa0472960:CDS
GGAGGAAGAGTTGGTGGAGT+TGG 0.355408 3_3:+75439067 None:intergenic
TTTCAAGGCCAAGAAGGTTC+TGG 0.364522 3_3:-75438869 Msa0472960:CDS
AGGTTTCTCCAGAACCTTCT+TGG 0.366103 3_3:+75438861 None:intergenic
ATTCTTTGGAGGATTATGTT+TGG 0.371669 3_3:-75438718 Msa0472960:CDS
GCTCAGATTCTTGAAGTTAT+GGG 0.387775 3_3:-75437591 Msa0472960:CDS
GAGGAAGAGTTGGTGGAGTT+GGG 0.388624 3_3:+75439068 None:intergenic
GAAGAGTGGTGAAGTGGAGG+AGG 0.390340 3_3:+75439021 None:intergenic
TCCAATCAGTCCTTGACATT+GGG 0.399769 3_3:+75434606 None:intergenic
TTCTTTGTGCTATTCTTTGG+AGG 0.401581 3_3:-75438729 Msa0472960:CDS
GATGGATTTAGGGTGGGGTG+TGG 0.403426 3_3:+75438987 None:intergenic
GACCAGCGTTTGTATCTGAT+TGG 0.406586 3_3:-75435121 Msa0472960:CDS
GGATGCCAAAAGAGAGCGTC+AGG 0.410942 3_3:-75434981 Msa0472960:CDS
TCTGAAAACGCCGATACGAC+TGG 0.413528 3_3:+75438924 None:intergenic
AACTTGAGGCTTTCTTCAAA+AGG 0.425511 3_3:-75438786 Msa0472960:CDS
CTCTTAAATCAGTTCCTGTA+AGG 0.432262 3_3:+75437562 None:intergenic
ACTGGGAGGGTGGAAAATTG+GGG 0.435232 3_3:+75438942 None:intergenic
TAATCAACAAGAGAAGAAAC+TGG 0.442934 3_3:+75434879 None:intergenic
GCCCAATGTCAAGGACTGAT+TGG 0.444990 3_3:-75434607 Msa0472960:three_prime_UTR
GCTGCCATTGCTTTCACCAC+AGG 0.445208 3_3:+75435046 None:intergenic
CTAGCAAGCAATAATAATCA+TGG 0.445372 3_3:-75434636 Msa0472960:three_prime_UTR
GTTGAGAAGGTTGAAAATAG+TGG 0.449934 3_3:-75434932 Msa0472960:CDS
CATAAAAGGTTCTGAGAGAA+AGG 0.450312 3_3:-75437457 Msa0472960:CDS
AGCAACAATAGCAGCAGAAA+GGG 0.450974 3_3:+75438639 None:intergenic
ATGGATTTAGGGTGGGGTGT+GGG 0.454697 3_3:+75438988 None:intergenic
TTAAGAGCCTATGTGATGTC+AGG 0.454783 3_3:-75437546 Msa0472960:CDS
CTGCCATTGCTTTCACCACA+GGG 0.455409 3_3:+75435047 None:intergenic
AAGAGTGGTGAAGTGGAGGA+GGG 0.455436 3_3:+75439022 None:intergenic
TGTTGTTCTTTCTGAAGGCA+TGG 0.459160 3_3:-75438680 Msa0472960:CDS
GGTGGCGGAGGAAGAGTTGG+TGG 0.460218 3_3:+75439061 None:intergenic
GTGCGGAAGTGAAAGGGTGG+CGG 0.461090 3_3:+75439046 None:intergenic
CGGAAGTGAAAGGGTGGCGG+AGG 0.461997 3_3:+75439049 None:intergenic
ACCACTGAACCTCGGTTTCA+AGG 0.465783 3_3:-75438884 Msa0472960:CDS
CAACGTTTGCTCCTAAGACT+TGG 0.466386 3_3:+75437495 None:intergenic
ATGGAGGAAGGAAGAGAGGA+TGG 0.475280 3_3:+75438969 None:intergenic
CTGGTCTGGGCCAGAAGCCA+TGG 0.478808 3_3:+75435138 None:intergenic
TTTGAAGAGTGGTGAAGTGG+AGG 0.482982 3_3:+75439018 None:intergenic
GAGTGGTGAAGTGGAGGAGG+GGG 0.485967 3_3:+75439024 None:intergenic
GTGAATGGAGGAAGGAAGAG+AGG 0.491713 3_3:+75438965 None:intergenic
ATCCAATCAGTCCTTGACAT+TGG 0.492594 3_3:+75434605 None:intergenic
TCAGATACAAACGCTGGTCT+GGG 0.495241 3_3:+75435125 None:intergenic
TGATGATCTTGATGAGATTG+AGG 0.500289 3_3:-75435011 Msa0472960:CDS
TTGTAGTGGTTGCGTTGCGC+AGG 0.502187 3_3:+75439235 None:intergenic
CTTAAATCAGTTCCTGTAAG+GGG 0.502763 3_3:+75437564 None:intergenic
AGAGAGGATGGATTTAGGGT+GGG 0.506943 3_3:+75438981 None:intergenic
CACGCGGTACCGTGAGGCCA+TGG 0.508270 3_3:-75438815 Msa0472960:CDS
CCTCGGTTTCAAGGCCAAGA+AGG 0.508496 3_3:-75438875 Msa0472960:CDS
CCAACCGTTATTTCAATCTC+CGG 0.514957 3_3:-75439159 Msa0472960:five_prime_UTR
GGAATGGACTCAGCGTTTGT+TGG 0.519014 3_3:-75434711 Msa0472960:three_prime_UTR
TCTTGATGAGATTGAGGATG+AGG 0.521181 3_3:-75435005 Msa0472960:CDS
AAGGGTGGCGGAGGAAGAGT+TGG 0.521568 3_3:+75439058 None:intergenic
AAACATCAATGATTATTGCT+TGG 0.522621 3_3:+75434907 None:intergenic
CTCGCCGGAGATTGAAATAA+CGG 0.524286 3_3:+75439155 None:intergenic
CCCTGATAAAGTTTATAGAA+TGG 0.526896 3_3:-75437637 Msa0472960:CDS
TTCCACCCTCCCAGTCGTAT+CGG 0.529276 3_3:-75438934 Msa0472960:CDS
AAGAGAGGATGGATTTAGGG+TGG 0.531745 3_3:+75438980 None:intergenic
CTGGGAGGGTGGAAAATTGG+GGG 0.535393 3_3:+75438943 None:intergenic
AGAGTGGTGAAGTGGAGGAG+GGG 0.535576 3_3:+75439023 None:intergenic
CCATTCTATAAACTTTATCA+GGG 0.535969 3_3:+75437637 None:intergenic
AAGCAACAATAGCAGCAGAA+AGG 0.536715 3_3:+75438638 None:intergenic
GCATCGAGAAGAAGTTGAGA+AGG 0.537185 3_3:-75434945 Msa0472960:CDS
TAGTTAACCACATCATAGAC+AGG 0.537406 3_3:+75434656 None:intergenic
CTGAAAACGCCGATACGACT+GGG 0.540096 3_3:+75438925 None:intergenic
CCTTCTTGGCCTTGAAACCG+AGG 0.540343 3_3:+75438875 None:intergenic
CGCCGATACGACTGGGAGGG+TGG 0.545100 3_3:+75438932 None:intergenic
GGGGTGCGGAAGTGAAAGGG+TGG 0.550967 3_3:+75439043 None:intergenic
TCTGGAGAAACCTACGGCCG+CGG 0.555143 3_3:-75438851 Msa0472960:CDS
CCGGAGATTGAAATAACGGT+TGG 0.556873 3_3:+75439159 None:intergenic
GAGAGGATGGATTTAGGGTG+GGG 0.563342 3_3:+75438982 None:intergenic
TAGCAAGCAATAATAATCAT+GGG 0.565605 3_3:-75434635 Msa0472960:three_prime_UTR
GCTAGCCGTTGATGTTCCCA+TGG 0.565913 3_3:-75435155 Msa0472960:CDS
AGGGTTTGTATATCCGCTCA+AGG 0.566257 3_3:-75437671 Msa0472960:CDS
TCTTAAATCAGTTCCTGTAA+GGG 0.573835 3_3:+75437563 None:intergenic
TGGTCTGGGCCAGAAGCCAT+GGG 0.574055 3_3:+75435139 None:intergenic
AAAAGAGTACACGGTTGGTG+GGG 0.574607 3_3:-75435092 Msa0472960:CDS
GCCTTGAAACCGAGGTTCAG+TGG 0.579549 3_3:+75438883 None:intergenic
TAAGAGCCTATGTGATGTCA+GGG 0.580638 3_3:-75437545 Msa0472960:CDS
ATAAAAGGTTCTGAGAGAAA+GGG 0.581290 3_3:-75437456 Msa0472960:CDS
TTAATTGTGTGGCATTGTAG+TGG 0.583194 3_3:+75439221 None:intergenic
AACGGTTGGTTCGACCCGAT+CGG 0.585749 3_3:+75439173 None:intergenic
GCAGAGGTCACCGCGGCCGT+AGG 0.586798 3_3:+75438841 None:intergenic
TGATGAGATTGAGGATGAGG+AGG 0.589562 3_3:-75435002 Msa0472960:CDS
TTAAATCAGTTCCTGTAAGG+GGG 0.593454 3_3:+75437565 None:intergenic
TGGGCGAATGCCCAATGTCA+AGG 0.601394 3_3:-75434616 Msa0472960:three_prime_UTR
AAAGAGTACACGGTTGGTGG+GGG 0.602508 3_3:-75435091 Msa0472960:CDS
AGATGTGTTAAGTCTTGTCA+TGG 0.606087 3_3:+75437614 None:intergenic
CAGCAATTTGTGTTACAACA+AGG 0.609379 3_3:+75434788 None:intergenic
TCAAAGCCACCACTGAACCT+CGG 0.609384 3_3:-75438892 Msa0472960:CDS
GACATCGACATACATCGGAA+TGG 0.612256 3_3:-75434727 Msa0472960:three_prime_UTR
AGCCTCAAGTTGCAAAACCA+TGG 0.612564 3_3:+75438798 None:intergenic
AGAAGCCATGGGAACATCAA+CGG 0.616261 3_3:+75435150 None:intergenic
GAAGGTTCTGGAGAAACCTA+CGG 0.620194 3_3:-75438857 Msa0472960:CDS
CGGCGAGTTCTATCACAGAT+CGG 0.630911 3_3:-75439139 Msa0472960:five_prime_UTR
GTTGCAAAACCATGGCCTCA+CGG 0.632840 3_3:+75438806 None:intergenic
GGGATTATACACTCAGGACA+AGG 0.634623 3_3:+75434677 None:intergenic
TGACAGACATCGACATACAT+CGG 0.637549 3_3:-75434732 Msa0472960:three_prime_UTR
TGCTTTCACGCGGTACCGTG+AGG 0.638373 3_3:-75438821 Msa0472960:CDS
TAAATCAGTTCCTGTAAGGG+GGG 0.651045 3_3:+75437566 None:intergenic
TAATTGAACTGTTAATTGTG+TGG 0.651478 3_3:+75439210 None:intergenic
TGCCAAAAGAGAGCGTCAGG+AGG 0.651941 3_3:-75434978 Msa0472960:CDS
AGACCCTGTGGTGAAAGCAA+TGG 0.653556 3_3:-75435050 Msa0472960:CDS
GGTTGATTGTGTGCCTTGAG+CGG 0.654227 3_3:+75437658 None:intergenic
CGATCTGTGATAGAACTCGC+CGG 0.654965 3_3:+75439140 None:intergenic
ATGTCAAGAACAAAATGCGG+TGG 0.658750 3_3:-75439108 Msa0472960:CDS
ACGGTACCGCGTGAAAGCAG+AGG 0.660527 3_3:+75438825 None:intergenic
AAACGCCGATACGACTGGGA+GGG 0.661669 3_3:+75438929 None:intergenic
TTGAAACCGAGGTTCAGTGG+TGG 0.661963 3_3:+75438886 None:intergenic
AGAGCCTATGTGATGTCAGG+GGG 0.670155 3_3:-75437543 Msa0472960:CDS
AAGAGCCTATGTGATGTCAG+GGG 0.683418 3_3:-75437544 Msa0472960:CDS
CAAATGTCAAGAACAAAATG+CGG 0.685833 3_3:-75439111 Msa0472960:CDS
CGGTGACCTCTGCTTTCACG+CGG 0.689212 3_3:-75438831 Msa0472960:CDS
TAGACAGGGATTATACACTC+AGG 0.691775 3_3:+75434671 None:intergenic
TTCCAATCAGATACAAACGC+TGG 0.692801 3_3:+75435119 None:intergenic
AGTTAACCACATCATAGACA+GGG 0.700668 3_3:+75434657 None:intergenic
TATAATCCCTGTCTATGATG+TGG 0.702245 3_3:-75434663 Msa0472960:three_prime_UTR
ATCTGATCTAAGAGACCCTG+TGG 0.712384 3_3:-75435062 Msa0472960:CDS
AAAACGCCGATACGACTGGG+AGG 0.714464 3_3:+75438928 None:intergenic
CGTGAAAGCAGAGGTCACCG+CGG 0.795470 3_3:+75438834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAACATCTTTTA+AGG - chr3_3:75436179-75436198 Msa0472960:intron 10.0%
!!! TTATTTTTAACATCTTTTAA+GGG - chr3_3:75436180-75436199 Msa0472960:intron 10.0%
!!! ATATTATTAATTTTGTTAAG+TGG + chr3_3:75437763-75437782 None:intergenic 10.0%
!!! AGTAAATTTTGTAATTTTAT+TGG - chr3_3:75437784-75437803 Msa0472960:intron 10.0%
!!! TAAAAAACAAAATTTTAAAC+TGG - chr3_3:75437864-75437883 Msa0472960:intron 10.0%
!!! AAAATTAATTTAACATTTTG+GGG + chr3_3:75438036-75438055 None:intergenic 10.0%
!!! AATAGTGTTTTTTTTAGATT+GGG - chr3_3:75436067-75436086 Msa0472960:intron 15.0%
!! AACTTTATTGTATGAATAAA+TGG + chr3_3:75437596-75437615 None:intergenic 15.0%
!!! TTTATGATTTTTTTTAAGTG+TGG + chr3_3:75437619-75437638 None:intergenic 15.0%
!!! GTTTTATGAATTGTATAAAT+AGG - chr3_3:75438232-75438251 Msa0472960:intron 15.0%
!! TCATAATCTATAATCAAAAC+TGG + chr3_3:75435393-75435412 None:intergenic 20.0%
!! AAAGATTTCATAAGTTATCT+CGG - chr3_3:75435529-75435548 Msa0472960:intron 20.0%
!!! TCTTATTTAAACTAATCTAC+TGG + chr3_3:75435652-75435671 None:intergenic 20.0%
!!! CAATAGTGTTTTTTTTAGAT+TGG - chr3_3:75436066-75436085 Msa0472960:intron 20.0%
!! ATTAATGATATAAACAAGAG+GGG + chr3_3:75436488-75436507 None:intergenic 20.0%
!! GATTAATGATATAAACAAGA+GGG + chr3_3:75436489-75436508 None:intergenic 20.0%
!!! CTGATGATATTTTAAGAATT+AGG + chr3_3:75436751-75436770 None:intergenic 20.0%
!! TATGTATGTAATTATCCAAA+TGG - chr3_3:75436884-75436903 Msa0472960:intron 20.0%
!! GTAAAATCTATAGATTGATA+TGG - chr3_3:75436995-75437014 Msa0472960:intron 20.0%
!! ATTGTATAAATAGGAAGTTA+TGG - chr3_3:75438241-75438260 Msa0472960:intron 20.0%
!!! GTTAATTTGGAATAATGATA+GGG - chr3_3:75438281-75438300 Msa0472960:intron 20.0%
!! TGTGATATAAGTTAAAACAT+AGG - chr3_3:75438532-75438551 Msa0472960:intron 20.0%
!! CTTAGAAAAAAAACTCAAAT+TGG + chr3_3:75439053-75439072 None:intergenic 20.0%
!!! CAATTTGAGTTTTTTTTCTA+AGG - chr3_3:75439051-75439070 Msa0472960:CDS 20.0%
!! AATTTTCTTGTAGAGAAAGA+AGG - chr3_3:75434591-75434610 Msa0472960:three_prime_UTR 25.0%
! TAATTGAACTGTTAATTGTG+TGG + chr3_3:75434663-75434682 None:intergenic 25.0%
!! TGCAAAATTTTATGTGCATT+AGG - chr3_3:75435299-75435318 Msa0472960:intron 25.0%
!! TTATTGATTATGATCCTGTT+TGG - chr3_3:75435339-75435358 Msa0472960:intron 25.0%
! AACTTAACAATGCTATATAC+TGG - chr3_3:75435429-75435448 Msa0472960:intron 25.0%
! ATGAGAATTATGATTCTGTT+TGG - chr3_3:75435707-75435726 Msa0472960:intron 25.0%
! TAGCTTATACATTATGTACA+AGG + chr3_3:75435810-75435829 None:intergenic 25.0%
! TTTCAAAGAGCTTATGAAAA+CGG + chr3_3:75435948-75435967 None:intergenic 25.0%
!! TCTTATTTGAACTAATCTAC+TGG + chr3_3:75435991-75436010 None:intergenic 25.0%
! CCATTCTATAAACTTTATCA+GGG + chr3_3:75436236-75436255 None:intergenic 25.0%
! CGATTAATGATATAAACAAG+AGG + chr3_3:75436490-75436509 None:intergenic 25.0%
! TAAGACAAACAAATTCTATC+AGG + chr3_3:75436513-75436532 None:intergenic 25.0%
! TAGTAGAATTTGATGCAAAA+TGG + chr3_3:75436581-75436600 None:intergenic 25.0%
! TTGAATGCTTACTATATCTT+CGG + chr3_3:75436818-75436837 None:intergenic 25.0%
! GATATAGTAAGCATTCAAAT+CGG - chr3_3:75436820-75436839 Msa0472960:intron 25.0%
! ATATTAGGTATGTTTCCATT+TGG + chr3_3:75436902-75436921 None:intergenic 25.0%
!! AGCGTAATGCTTATATTTTA+AGG - chr3_3:75437172-75437191 Msa0472960:intron 25.0%
!!! GTAATGCTTATATTTTAAGG+AGG - chr3_3:75437175-75437194 Msa0472960:intron 25.0%
! AGAAACTAAACCTCTAATAA+AGG + chr3_3:75437227-75437246 None:intergenic 25.0%
! AAATGTTATAAAACTCAGAC+CGG - chr3_3:75437507-75437526 Msa0472960:CDS 25.0%
!! AGATTATATGTAGAGTGTTT+AGG + chr3_3:75438098-75438117 None:intergenic 25.0%
! AGCTCGGTAATTTATTATTA+AGG - chr3_3:75438135-75438154 Msa0472960:intron 25.0%
! TCGGTAATTTATTATTAAGG+AGG - chr3_3:75438138-75438157 Msa0472960:intron 25.0%
! TAAATAGGAAGTTATGGAAA+AGG - chr3_3:75438247-75438266 Msa0472960:intron 25.0%
! AAATAGGAAGTTATGGAAAA+GGG - chr3_3:75438248-75438267 Msa0472960:intron 25.0%
!! GGTTAATTTGGAATAATGAT+AGG - chr3_3:75438280-75438299 Msa0472960:intron 25.0%
! ATCAAGATCATCAAATTCTT+TGG + chr3_3:75438852-75438871 None:intergenic 25.0%
! AAACATCAATGATTATTGCT+TGG + chr3_3:75438966-75438985 None:intergenic 25.0%
! TAGCAAGCAATAATAATCAT+GGG - chr3_3:75439235-75439254 Msa0472960:five_prime_UTR 25.0%
! CAGTTCAATTAGTCCATTTT+TGG - chr3_3:75434672-75434691 Msa0472960:three_prime_UTR 30.0%
CAAATGTCAAGAACAAAATG+CGG - chr3_3:75434759-75434778 Msa0472960:three_prime_UTR 30.0%
! AGGAATAACCTTTTTCTGTT+TGG - chr3_3:75435104-75435123 Msa0472960:CDS 30.0%
! TTGTTCTTTGTGCTATTCTT+TGG - chr3_3:75435138-75435157 Msa0472960:CDS 30.0%
! ATTCTTTGGAGGATTATGTT+TGG - chr3_3:75435152-75435171 Msa0472960:CDS 30.0%
!!! ACTTTTGTTGTTCTTTCTGA+AGG - chr3_3:75435185-75435204 Msa0472960:intron 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + chr3_3:75435356-75435375 None:intergenic 30.0%
TTATAGATTATGACCCTGTT+TGG - chr3_3:75435400-75435419 Msa0472960:intron 30.0%
! TTAAGTTGCTTATCCAAACA+GGG + chr3_3:75435416-75435435 None:intergenic 30.0%
!! TATATACTGGTTCTGATCAT+AGG - chr3_3:75435442-75435461 Msa0472960:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr3_3:75435564-75435583 Msa0472960:intron 30.0%
ATAGAGAATTAGAGATGGTT+TGG + chr3_3:75435679-75435698 None:intergenic 30.0%
ATGTCATAGAGAATTAGAGA+TGG + chr3_3:75435684-75435703 None:intergenic 30.0%
TCTTATTGTAGATTATGACC+CGG - chr3_3:75435760-75435779 Msa0472960:intron 30.0%
TTCATTTCTGTAAACTCTCT+AGG + chr3_3:75435896-75435915 None:intergenic 30.0%
!!! GTGTTTTTTTTAGATTGGGA+AGG - chr3_3:75436071-75436090 Msa0472960:intron 30.0%
! GTGAATTCTGCATTGATATA+TGG - chr3_3:75436140-75436159 Msa0472960:intron 30.0%
CCCTGATAAAGTTTATAGAA+TGG - chr3_3:75436233-75436252 Msa0472960:intron 30.0%
GCCATTCTATAAACTTTATC+AGG + chr3_3:75436237-75436256 None:intergenic 30.0%
TCTTAAATCAGTTCCTGTAA+GGG + chr3_3:75436310-75436329 None:intergenic 30.0%
! GCTTGATTTTCTTTAACGTA+AGG + chr3_3:75436356-75436375 None:intergenic 30.0%
! TTTCTCATTTTCCCCATAAA+AGG - chr3_3:75436399-75436418 Msa0472960:intron 30.0%
! TTTCTCTCAGAACCTTTTAT+GGG + chr3_3:75436414-75436433 None:intergenic 30.0%
!! ATAAAAGGTTCTGAGAGAAA+GGG - chr3_3:75436414-75436433 Msa0472960:intron 30.0%
TGTTGAAGTCAAGAAAAAAC+AGG - chr3_3:75436446-75436465 Msa0472960:intron 30.0%
GTTGAAGTCAAGAAAAAACA+GGG - chr3_3:75436447-75436466 Msa0472960:intron 30.0%
TATCATGACATGGATAAAAC+AGG + chr3_3:75436625-75436644 None:intergenic 30.0%
AGCTAACAAATATCATGACA+TGG + chr3_3:75436635-75436654 None:intergenic 30.0%
CAAAATCATACAGATGAAGT+TGG + chr3_3:75436708-75436727 None:intergenic 30.0%
GAATTAGGAAGACATAATTC+TGG + chr3_3:75436736-75436755 None:intergenic 30.0%
!!! AATCAAGCCAACTTTTTCAA+AGG + chr3_3:75437053-75437072 None:intergenic 30.0%
!! TTTGAAAAAGTTGGCTTGAT+TGG - chr3_3:75437052-75437071 Msa0472960:intron 30.0%
!! TTGAAAAAGTTGGCTTGATT+GGG - chr3_3:75437053-75437072 Msa0472960:intron 30.0%
AGCAATGAGTTAAATCTTGA+AGG - chr3_3:75437110-75437129 Msa0472960:intron 30.0%
! GGTTTAGTTTCTTTGATATC+AGG - chr3_3:75437235-75437254 Msa0472960:intron 30.0%
!! CACATTTTCATTTGAGATAC+CGG - chr3_3:75437350-75437369 Msa0472960:intron 30.0%
!! ACATTTTCATTTGAGATACC+GGG - chr3_3:75437351-75437370 Msa0472960:intron 30.0%
!!! CGGTATGAATTTTTAAAGTG+TGG + chr3_3:75437650-75437669 None:intergenic 30.0%
AGACCAAATGTATAGTGTTT+AGG - chr3_3:75437987-75438006 Msa0472960:intron 30.0%
CATAATTGTTCCTTAATGAG+AGG + chr3_3:75438178-75438197 None:intergenic 30.0%
! ATTTGGAATAATGATAGGGA+AGG - chr3_3:75438285-75438304 Msa0472960:intron 30.0%
TACCAATTCTTGTCATTCTA+AGG - chr3_3:75438348-75438367 Msa0472960:intron 30.0%
TACCTTAGAATGACAAGAAT+TGG + chr3_3:75438353-75438372 None:intergenic 30.0%
TAAGAATCCTACCACAATAT+TGG + chr3_3:75438425-75438444 None:intergenic 30.0%
TGTACATTTCTTGTCTTCTA+GGG + chr3_3:75438615-75438634 None:intergenic 30.0%
TTGTACATTTCTTGTCTTCT+AGG + chr3_3:75438616-75438635 None:intergenic 30.0%
! TGGAAATGAAAAAGAGTACA+CGG - chr3_3:75438769-75438788 Msa0472960:CDS 30.0%
TAATCAACAAGAGAAGAAAC+TGG + chr3_3:75438994-75439013 None:intergenic 30.0%
! TTTCTTCTCTTGTTGATTAC+AGG - chr3_3:75438995-75439014 Msa0472960:CDS 30.0%
CTAGCAAGCAATAATAATCA+TGG - chr3_3:75439234-75439253 Msa0472960:five_prime_UTR 30.0%
TTAATTGTGTGGCATTGTAG+TGG + chr3_3:75434652-75434671 None:intergenic 35.0%
!! AATTTTGAAGAGTGGTGAAG+TGG + chr3_3:75434858-75434877 None:intergenic 35.0%
!! TGGGTAGTAATTTTGAAGAG+TGG + chr3_3:75434866-75434885 None:intergenic 35.0%
AACTTGAGGCTTTCTTCAAA+AGG - chr3_3:75435084-75435103 Msa0472960:CDS 35.0%
! TTCTTTGTGCTATTCTTTGG+AGG - chr3_3:75435141-75435160 Msa0472960:CDS 35.0%
ATTATCCAAACTGGAAAGGA+AGG + chr3_3:75435275-75435294 None:intergenic 35.0%
TCCTTTCCAGTTTGGATAAT+TGG - chr3_3:75435275-75435294 Msa0472960:intron 35.0%
TCCAATTATCCAAACTGGAA+AGG + chr3_3:75435279-75435298 None:intergenic 35.0%
TTGCATCCAATTATCCAAAC+TGG + chr3_3:75435284-75435303 None:intergenic 35.0%
! GTTAAGTTGCTTATCCAAAC+AGG + chr3_3:75435417-75435436 None:intergenic 35.0%
TTTCATAAGTTATCTCGGAG+AGG - chr3_3:75435534-75435553 Msa0472960:intron 35.0%
! ATTAAGTTGCTTATCCCAAC+CGG + chr3_3:75435782-75435801 None:intergenic 35.0%
AATGAACTGAAATCAGCTCA+TGG - chr3_3:75435910-75435929 Msa0472960:intron 35.0%
ATGAACTGAAATCAGCTCAT+GGG - chr3_3:75435911-75435930 Msa0472960:intron 35.0%
! AGATGTGTTAAGTCTTGTCA+TGG + chr3_3:75436259-75436278 None:intergenic 35.0%
TGCTCAGATTCTTGAAGTTA+TGG - chr3_3:75436278-75436297 Msa0472960:intron 35.0%
GCTCAGATTCTTGAAGTTAT+GGG - chr3_3:75436279-75436298 Msa0472960:intron 35.0%
TTAAATCAGTTCCTGTAAGG+GGG + chr3_3:75436308-75436327 None:intergenic 35.0%
CTTAAATCAGTTCCTGTAAG+GGG + chr3_3:75436309-75436328 None:intergenic 35.0%
CTCTTAAATCAGTTCCTGTA+AGG + chr3_3:75436311-75436330 None:intergenic 35.0%
AGAAAATCAAGCCAAGTCTT+AGG - chr3_3:75436364-75436383 Msa0472960:intron 35.0%
! TTCTCTCAGAACCTTTTATG+GGG + chr3_3:75436413-75436432 None:intergenic 35.0%
! CTTTCTCTCAGAACCTTTTA+TGG + chr3_3:75436415-75436434 None:intergenic 35.0%
!! CATAAAAGGTTCTGAGAGAA+AGG - chr3_3:75436413-75436432 Msa0472960:intron 35.0%
CTTCCAAGAAATCAAACTTC+GGG + chr3_3:75436660-75436679 None:intergenic 35.0%
GCTTCCAAGAAATCAAACTT+CGG + chr3_3:75436661-75436680 None:intergenic 35.0%
!! TTCTTGGAAGCATTCATATC+TGG - chr3_3:75436670-75436689 Msa0472960:intron 35.0%
AAGCATTCATATCTGGTGAA+TGG - chr3_3:75436677-75436696 Msa0472960:intron 35.0%
! AGGAAGACATAATTCTGGAA+AGG + chr3_3:75436731-75436750 None:intergenic 35.0%
CATCAGATTGTCTTTAGTCT+AGG - chr3_3:75436765-75436784 Msa0472960:intron 35.0%
TGTCTTTAGTCTAGGAATAG+TGG - chr3_3:75436773-75436792 Msa0472960:intron 35.0%
TTTAGTCTAGGAATAGTGGT+GGG - chr3_3:75436777-75436796 Msa0472960:intron 35.0%
AAGCATTCAAATCGGAATAG+TGG - chr3_3:75436828-75436847 Msa0472960:intron 35.0%
! CGCTTGTGCTTTTATATACA+TGG + chr3_3:75436935-75436954 None:intergenic 35.0%
! GTAAAACCGCCCTTTAAAAA+TGG + chr3_3:75436961-75436980 None:intergenic 35.0%
! GATGCTTCCTTTGAAAAAGT+TGG - chr3_3:75437043-75437062 Msa0472960:intron 35.0%
! TTCCTTTTGGCACATTTCAT+TGG - chr3_3:75437149-75437168 Msa0472960:intron 35.0%
! GTTACTTTGGACTTGAAACA+TGG - chr3_3:75437287-75437306 Msa0472960:intron 35.0%
AAAATGTGAACTTCAGCACA+AGG + chr3_3:75437338-75437357 None:intergenic 35.0%
!! CATTTTCATTTGAGATACCG+GGG - chr3_3:75437352-75437371 Msa0472960:intron 35.0%
!! ATTTTCATTTGAGATACCGG+GGG - chr3_3:75437353-75437372 Msa0472960:intron 35.0%
CAAAAGCCTCAATGAACATA+CGG + chr3_3:75437391-75437410 None:intergenic 35.0%
ACAATAGTTGGGTCATAACA+TGG + chr3_3:75437417-75437436 None:intergenic 35.0%
TGTTATGACCCAACTATTGT+TGG - chr3_3:75437417-75437436 Msa0472960:intron 35.0%
TTTCCTTGAATTACACAACG+AGG - chr3_3:75437484-75437503 Msa0472960:CDS 35.0%
TTTCCTCGTTGTGTAATTCA+AGG + chr3_3:75437490-75437509 None:intergenic 35.0%
GTACTATGTCAATGGATCAT+TGG - chr3_3:75437547-75437566 Msa0472960:CDS 35.0%
TATGAACATCTACTGAAGCA+CGG + chr3_3:75437670-75437689 None:intergenic 35.0%
CAGTGAAAACTAGTTAGACT+CGG + chr3_3:75437910-75437929 None:intergenic 35.0%
ACTGATCTGAGTCACTATAT+GGG + chr3_3:75437951-75437970 None:intergenic 35.0%
AACTGATCTGAGTCACTATA+TGG + chr3_3:75437952-75437971 None:intergenic 35.0%
GTGCCTAAACACTATACATT+TGG + chr3_3:75437993-75438012 None:intergenic 35.0%
TTAAGGAGGATTCCTTTGTT+AGG - chr3_3:75438152-75438171 Msa0472960:intron 35.0%
!! GTCATTCTAAGGTATTGTAC+TGG - chr3_3:75438359-75438378 Msa0472960:intron 35.0%
AAGGATGTTACTGGTATCTA+TGG + chr3_3:75438465-75438484 None:intergenic 35.0%
TACAAGGAATATGGAGGATA+AGG + chr3_3:75438484-75438503 None:intergenic 35.0%
GGAAATTACAAGGAATATGG+AGG + chr3_3:75438490-75438509 None:intergenic 35.0%
GGAGGAAATTACAAGGAATA+TGG + chr3_3:75438493-75438512 None:intergenic 35.0%
AACTTATATCACACATGCAG+AGG + chr3_3:75438525-75438544 None:intergenic 35.0%
ACAAGAAATGTACAATGCAG+AGG - chr3_3:75438621-75438640 Msa0472960:intron 35.0%
CAAGAAATGTACAATGCAGA+GGG - chr3_3:75438622-75438641 Msa0472960:intron 35.0%
AAGAAATGTACAATGCAGAG+GGG - chr3_3:75438623-75438642 Msa0472960:intron 35.0%
! AATGAAAAAGAGTACACGGT+TGG - chr3_3:75438773-75438792 Msa0472960:CDS 35.0%
TGATGATCTTGATGAGATTG+AGG - chr3_3:75438859-75438878 Msa0472960:CDS 35.0%
GTTGAGAAGGTTGAAAATAG+TGG - chr3_3:75438938-75438957 Msa0472960:CDS 35.0%
CAGCAATTTGTGTTACAACA+AGG + chr3_3:75439085-75439104 None:intergenic 35.0%
TATAATCCCTGTCTATGATG+TGG - chr3_3:75439207-75439226 Msa0472960:five_prime_UTR 35.0%
AGTTAACCACATCATAGACA+GGG + chr3_3:75439216-75439235 None:intergenic 35.0%
TAGTTAACCACATCATAGAC+AGG + chr3_3:75439217-75439236 None:intergenic 35.0%
! CCAACCGTTATTTCAATCTC+CGG - chr3_3:75434711-75434730 Msa0472960:three_prime_UTR 40.0%
ATGTCAAGAACAAAATGCGG+TGG - chr3_3:75434762-75434781 Msa0472960:three_prime_UTR 40.0%
! AGGAAGAGAGGATGGATTTA+GGG + chr3_3:75434896-75434915 None:intergenic 40.0%
! AAGGAAGAGAGGATGGATTT+AGG + chr3_3:75434897-75434916 None:intergenic 40.0%
!!! TTTTTCTGTTTGGTGCTGCT+GGG - chr3_3:75435114-75435133 Msa0472960:CDS 40.0%
! TGTTGTTCTTTCTGAAGGCA+TGG - chr3_3:75435190-75435209 Msa0472960:intron 40.0%
AGCAACAATAGCAGCAGAAA+GGG + chr3_3:75435234-75435253 None:intergenic 40.0%
AAGCAACAATAGCAGCAGAA+AGG + chr3_3:75435235-75435254 None:intergenic 40.0%
TCATAGGTTATGACGCTGTT+TGG - chr3_3:75435458-75435477 Msa0472960:intron 40.0%
! TTGTGACTTGTGAGACTGTT+TGG + chr3_3:75435620-75435639 None:intergenic 40.0%
ATTGTAGATTATGACCCGGT+TGG - chr3_3:75435764-75435783 Msa0472960:intron 40.0%
TTGTAGATTATGACCCGGTT+GGG - chr3_3:75435765-75435784 Msa0472960:intron 40.0%
! TTAAGTTGCTTATCCCAACC+GGG + chr3_3:75435781-75435800 None:intergenic 40.0%
CAAATAAGACTCCAAACCAG+CGG - chr3_3:75436002-75436021 Msa0472960:intron 40.0%
TAAATCAGTTCCTGTAAGGG+GGG + chr3_3:75436307-75436326 None:intergenic 40.0%
TTAAGAGCCTATGTGATGTC+AGG - chr3_3:75436324-75436343 Msa0472960:intron 40.0%
TAAGAGCCTATGTGATGTCA+GGG - chr3_3:75436325-75436344 Msa0472960:intron 40.0%
AGTCAAGAAAAAACAGGGCA+AGG - chr3_3:75436452-75436471 Msa0472960:intron 40.0%
! TAGCCCGAAGTTTGATTTCT+TGG - chr3_3:75436654-75436673 Msa0472960:intron 40.0%
CTTTAGTCTAGGAATAGTGG+TGG - chr3_3:75436776-75436795 Msa0472960:intron 40.0%
!! TTCAAATCGGAATAGTGGAC+TGG - chr3_3:75436833-75436852 Msa0472960:intron 40.0%
CATGGTCAGAGCATGATATT+AGG + chr3_3:75436917-75436936 None:intergenic 40.0%
!! ACAAGCGCGTCCATTTTTAA+AGG - chr3_3:75436948-75436967 Msa0472960:intron 40.0%
!! CAAGCGCGTCCATTTTTAAA+GGG - chr3_3:75436949-75436968 Msa0472960:intron 40.0%
!! AAAAAGTTGGCTTGATTGGG+TGG - chr3_3:75437056-75437075 Msa0472960:intron 40.0%
!! AAAAGTTGGCTTGATTGGGT+GGG - chr3_3:75437057-75437076 Msa0472960:intron 40.0%
! TAAGCCATCCATGTTCCTTT+TGG - chr3_3:75437136-75437155 Msa0472960:intron 40.0%
GAAATGTGCCAAAAGGAACA+TGG + chr3_3:75437147-75437166 None:intergenic 40.0%
CTCCAATGAAATGTGCCAAA+AGG + chr3_3:75437154-75437173 None:intergenic 40.0%
GATGCTTGCACAAGTTACTT+TGG - chr3_3:75437274-75437293 Msa0472960:intron 40.0%
!! TTTTCATTTGAGATACCGGG+GGG - chr3_3:75437354-75437373 Msa0472960:intron 40.0%
TCTTCACCGTATGTTCATTG+AGG - chr3_3:75437382-75437401 Msa0472960:intron 40.0%
ATGACCCAACTATTGTTGGT+TGG - chr3_3:75437421-75437440 Msa0472960:CDS 40.0%
GCTTCCAACCAACAATAGTT+GGG + chr3_3:75437428-75437447 None:intergenic 40.0%
TGCTTCCAACCAACAATAGT+TGG + chr3_3:75437429-75437448 None:intergenic 40.0%
TGAAAACTAGTTAGACTCGG+TGG + chr3_3:75437907-75437926 None:intergenic 40.0%
!!! CGAGTCTAACTAGTTTTCAC+TGG - chr3_3:75437908-75437927 Msa0472960:intron 40.0%
GTTTAGGCACACATACAATG+AGG - chr3_3:75438003-75438022 Msa0472960:intron 40.0%
GTGAACATAGAAGAGTAGCT+CGG - chr3_3:75438119-75438138 Msa0472960:intron 40.0%
CTTAATGAGAGGCCTAACAA+AGG + chr3_3:75438167-75438186 None:intergenic 40.0%
CTTTGTTAGGCCTCTCATTA+AGG - chr3_3:75438165-75438184 Msa0472960:intron 40.0%
TAGGAAGTTATGGAAAAGGG+AGG - chr3_3:75438251-75438270 Msa0472960:intron 40.0%
AGGAAGTTATGGAAAAGGGA+GGG - chr3_3:75438252-75438271 Msa0472960:intron 40.0%
ATCCAAGACTCTCGAATTCT+TGG - chr3_3:75438312-75438331 Msa0472960:intron 40.0%
AAGACTCTCGAATTCTTGGA+GGG - chr3_3:75438316-75438335 Msa0472960:intron 40.0%
!! TCTAAGGTATTGTACTGGTG+TGG - chr3_3:75438364-75438383 Msa0472960:intron 40.0%
CTTCTGCTGTTCCAATATTG+TGG - chr3_3:75438411-75438430 Msa0472960:intron 40.0%
TGCTGTTCCAATATTGTGGT+AGG - chr3_3:75438415-75438434 Msa0472960:intron 40.0%
ATGGAGGATAAGGATGTTAC+TGG + chr3_3:75438474-75438493 None:intergenic 40.0%
GAGGGGAAATTTATGCTTCA+AGG - chr3_3:75438640-75438659 Msa0472960:CDS 40.0%
TTCCAATCAGATACAAACGC+TGG + chr3_3:75438754-75438773 None:intergenic 40.0%
! AAAAAGAGTACACGGTTGGT+GGG - chr3_3:75438777-75438796 Msa0472960:CDS 40.0%
TCTTGATGAGATTGAGGATG+AGG - chr3_3:75438865-75438884 Msa0472960:CDS 40.0%
TGACAGACATCGACATACAT+CGG - chr3_3:75439138-75439157 Msa0472960:five_prime_UTR 40.0%
TAGACAGGGATTATACACTC+AGG + chr3_3:75439202-75439221 None:intergenic 40.0%
TCCAATCAGTCCTTGACATT+GGG + chr3_3:75439267-75439286 None:intergenic 40.0%
ATCCAATCAGTCCTTGACAT+TGG + chr3_3:75439268-75439287 None:intergenic 40.0%
!!! AGTCCATTTTTGGTGCCGAT+CGG - chr3_3:75434682-75434701 Msa0472960:three_prime_UTR 45.0%
CCGGAGATTGAAATAACGGT+TGG + chr3_3:75434714-75434733 None:intergenic 45.0%
CTCGCCGGAGATTGAAATAA+CGG + chr3_3:75434718-75434737 None:intergenic 45.0%
TTTGAAGAGTGGTGAAGTGG+AGG + chr3_3:75434855-75434874 None:intergenic 45.0%
! AGAGAGGATGGATTTAGGGT+GGG + chr3_3:75434892-75434911 None:intergenic 45.0%
! AAGAGAGGATGGATTTAGGG+TGG + chr3_3:75434893-75434912 None:intergenic 45.0%
TTTCAAGGCCAAGAAGGTTC+TGG - chr3_3:75435001-75435020 Msa0472960:CDS 45.0%
AGGTTTCTCCAGAACCTTCT+TGG + chr3_3:75435012-75435031 None:intergenic 45.0%
!! GAAGGTTCTGGAGAAACCTA+CGG - chr3_3:75435013-75435032 Msa0472960:CDS 45.0%
! AGCCTCAAGTTGCAAAACCA+TGG + chr3_3:75435075-75435094 None:intergenic 45.0%
CAGCAGCACCAAACAGAAAA+AGG + chr3_3:75435115-75435134 None:intergenic 45.0%
!!! CTTTTTCTGTTTGGTGCTGC+TGG - chr3_3:75435113-75435132 Msa0472960:CDS 45.0%
!!! TTTTCTGTTTGGTGCTGCTG+GGG - chr3_3:75435115-75435134 Msa0472960:CDS 45.0%
! TCTGAAGGCATGGCTAAGTA+TGG - chr3_3:75435200-75435219 Msa0472960:intron 45.0%
CCAAACTGGAAAGGAAGGAA+AGG + chr3_3:75435270-75435289 None:intergenic 45.0%
CCTTTCCTTCCTTTCCAGTT+TGG - chr3_3:75435267-75435286 Msa0472960:intron 45.0%
AAGTTATCTCGGAGAGGTTG+TGG - chr3_3:75435540-75435559 Msa0472960:intron 45.0%
ACAAATAGTCATACAGCCGC+TGG + chr3_3:75436021-75436040 None:intergenic 45.0%
AGGGTTTGTATATCCGCTCA+AGG - chr3_3:75436199-75436218 Msa0472960:intron 45.0%
AAGAGCCTATGTGATGTCAG+GGG - chr3_3:75436326-75436345 Msa0472960:intron 45.0%
CAACGTTTGCTCCTAAGACT+TGG + chr3_3:75436378-75436397 None:intergenic 45.0%
AAAATGGAAAGACGACGCTG+AGG + chr3_3:75436565-75436584 None:intergenic 45.0%
!! AAAGTTGGCTTGATTGGGTG+GGG - chr3_3:75437058-75437077 Msa0472960:intron 45.0%
TGTGCCAAAAGGAACATGGA+TGG + chr3_3:75437143-75437162 None:intergenic 45.0%
GCTGACAAGGCCTTTATTAG+AGG - chr3_3:75437214-75437233 Msa0472960:intron 45.0%
ACAGAATGTCCATGCCTACA+AGG - chr3_3:75437312-75437331 Msa0472960:intron 45.0%
! TTTCATTTGAGATACCGGGG+GGG - chr3_3:75437355-75437374 Msa0472960:intron 45.0%
!! TGGTGAGGGTACTATGTCAA+TGG - chr3_3:75437539-75437558 Msa0472960:CDS 45.0%
!!! GTTAGACTCGGTGGATTTTG+TGG + chr3_3:75437898-75437917 None:intergenic 45.0%
TATGGAAAAGGGAGGGAAGT+TGG - chr3_3:75438259-75438278 Msa0472960:intron 45.0%
! GGGAGGGAAGTTGGTTAATT+TGG - chr3_3:75438268-75438287 Msa0472960:intron 45.0%
CTCCAAGAATTCGAGAGTCT+TGG + chr3_3:75438317-75438336 None:intergenic 45.0%
CAAGACTCTCGAATTCTTGG+AGG - chr3_3:75438315-75438334 Msa0472960:intron 45.0%
GAGAGGAGGAGGAAATTACA+AGG + chr3_3:75438500-75438519 None:intergenic 45.0%
AGAAGCCATGGGAACATCAA+CGG + chr3_3:75438723-75438742 None:intergenic 45.0%
! TCAGATACAAACGCTGGTCT+GGG + chr3_3:75438748-75438767 None:intergenic 45.0%
ATCAGATACAAACGCTGGTC+TGG + chr3_3:75438749-75438768 None:intergenic 45.0%
GACCAGCGTTTGTATCTGAT+TGG - chr3_3:75438749-75438768 Msa0472960:CDS 45.0%
! GAAAAAGAGTACACGGTTGG+TGG - chr3_3:75438776-75438795 Msa0472960:CDS 45.0%
! AAAAGAGTACACGGTTGGTG+GGG - chr3_3:75438778-75438797 Msa0472960:CDS 45.0%
ATCTGATCTAAGAGACCCTG+TGG - chr3_3:75438808-75438827 Msa0472960:CDS 45.0%
TGATGAGATTGAGGATGAGG+AGG - chr3_3:75438868-75438887 Msa0472960:CDS 45.0%
GCATCGAGAAGAAGTTGAGA+AGG - chr3_3:75438925-75438944 Msa0472960:CDS 45.0%
GACATCGACATACATCGGAA+TGG - chr3_3:75439143-75439162 Msa0472960:five_prime_UTR 45.0%
GGGATTATACACTCAGGACA+AGG + chr3_3:75439196-75439215 None:intergenic 45.0%
!!! TAAAATTAATTTAACATTTT+GGG + chr3_3:75438037-75438056 None:intergenic 5.0%
!!! ATAAAATTAATTTAACATTT+TGG + chr3_3:75438038-75438057 None:intergenic 5.0%
!!! GTCCATTTTTGGTGCCGATC+GGG - chr3_3:75434683-75434702 Msa0472960:three_prime_UTR 50.0%
CGATCTGTGATAGAACTCGC+CGG + chr3_3:75434733-75434752 None:intergenic 50.0%
CGGCGAGTTCTATCACAGAT+CGG - chr3_3:75434731-75434750 Msa0472960:three_prime_UTR 50.0%
!! GAGGAAGAGTTGGTGGAGTT+GGG + chr3_3:75434805-75434824 None:intergenic 50.0%
AAGAGTGGTGAAGTGGAGGA+GGG + chr3_3:75434851-75434870 None:intergenic 50.0%
! ATGGATTTAGGGTGGGGTGT+GGG + chr3_3:75434885-75434904 None:intergenic 50.0%
! GAGAGGATGGATTTAGGGTG+GGG + chr3_3:75434891-75434910 None:intergenic 50.0%
ATGGAGGAAGGAAGAGAGGA+TGG + chr3_3:75434904-75434923 None:intergenic 50.0%
GTGAATGGAGGAAGGAAGAG+AGG + chr3_3:75434908-75434927 None:intergenic 50.0%
AATTGGGGGTGAATGGAGGA+AGG + chr3_3:75434916-75434935 None:intergenic 50.0%
GGAAAATTGGGGGTGAATGG+AGG + chr3_3:75434920-75434939 None:intergenic 50.0%
GGTGGAAAATTGGGGGTGAA+TGG + chr3_3:75434923-75434942 None:intergenic 50.0%
ACTGGGAGGGTGGAAAATTG+GGG + chr3_3:75434931-75434950 None:intergenic 50.0%
GACTGGGAGGGTGGAAAATT+GGG + chr3_3:75434932-75434951 None:intergenic 50.0%
CTGAAAACGCCGATACGACT+GGG + chr3_3:75434948-75434967 None:intergenic 50.0%
TCTGAAAACGCCGATACGAC+TGG + chr3_3:75434949-75434968 None:intergenic 50.0%
TCAAAGCCACCACTGAACCT+CGG - chr3_3:75434978-75434997 Msa0472960:CDS 50.0%
TTGAAACCGAGGTTCAGTGG+TGG + chr3_3:75434987-75435006 None:intergenic 50.0%
ACCACTGAACCTCGGTTTCA+AGG - chr3_3:75434986-75435005 Msa0472960:CDS 50.0%
GTTGCAAAACCATGGCCTCA+CGG + chr3_3:75435067-75435086 None:intergenic 50.0%
!! GGCCATGGTTTTGCAACTTG+AGG - chr3_3:75435070-75435089 Msa0472960:CDS 50.0%
! TAGTCATACAGCCGCTGGTT+TGG + chr3_3:75436016-75436035 None:intergenic 50.0%
GGTTGATTGTGTGCCTTGAG+CGG + chr3_3:75436215-75436234 None:intergenic 50.0%
AGAGCCTATGTGATGTCAGG+GGG - chr3_3:75436327-75436346 Msa0472960:intron 50.0%
!! GCGCGTCCATTTTTAAAGGG+CGG - chr3_3:75436952-75436971 Msa0472960:intron 50.0%
CCTTGTCAGCAGCAATGACA+GGG + chr3_3:75437204-75437223 None:intergenic 50.0%
! ACTTCAGCACAAGGCCTTGT+AGG + chr3_3:75437329-75437348 None:intergenic 50.0%
! TTCATTTGAGATACCGGGGG+GGG - chr3_3:75437356-75437375 Msa0472960:intron 50.0%
ACTCAGACCGGACAACGATT+TGG - chr3_3:75437519-75437538 Msa0472960:CDS 50.0%
!! ACCGGACAACGATTTGGTGA+GGG - chr3_3:75437525-75437544 Msa0472960:CDS 50.0%
ACCCTCACCAAATCGTTGTC+CGG + chr3_3:75437529-75437548 None:intergenic 50.0%
TCACACATGCAGAGGAAGAG+AGG + chr3_3:75438517-75438536 None:intergenic 50.0%
GTTGATGTTCCCATGGCTTC+TGG - chr3_3:75438722-75438741 Msa0472960:CDS 50.0%
!! AAAGAGTACACGGTTGGTGG+GGG - chr3_3:75438779-75438798 Msa0472960:CDS 50.0%
AGACCCTGTGGTGAAAGCAA+TGG - chr3_3:75438820-75438839 Msa0472960:CDS 50.0%
CTGCCATTGCTTTCACCACA+GGG + chr3_3:75438826-75438845 None:intergenic 50.0%
! AACCTCCTGACGCTCTCTTT+TGG + chr3_3:75438897-75438916 None:intergenic 50.0%
! GGAATGGACTCAGCGTTTGT+TGG - chr3_3:75439159-75439178 Msa0472960:five_prime_UTR 50.0%
GCCCAATGTCAAGGACTGAT+TGG - chr3_3:75439263-75439282 Msa0472960:five_prime_UTR 50.0%
TTGTAGTGGTTGCGTTGCGC+AGG + chr3_3:75434638-75434657 None:intergenic 55.0%
GACCCGATCGGCACCAAAAA+TGG + chr3_3:75434688-75434707 None:intergenic 55.0%
!! AACGGTTGGTTCGACCCGAT+CGG + chr3_3:75434700-75434719 None:intergenic 55.0%
!! GGAGGAAGAGTTGGTGGAGT+TGG + chr3_3:75434806-75434825 None:intergenic 55.0%
AGAGTGGTGAAGTGGAGGAG+GGG + chr3_3:75434850-75434869 None:intergenic 55.0%
GAAGAGTGGTGAAGTGGAGG+AGG + chr3_3:75434852-75434871 None:intergenic 55.0%
! GATGGATTTAGGGTGGGGTG+TGG + chr3_3:75434886-75434905 None:intergenic 55.0%
CTGGGAGGGTGGAAAATTGG+GGG + chr3_3:75434930-75434949 None:intergenic 55.0%
CGACTGGGAGGGTGGAAAAT+TGG + chr3_3:75434933-75434952 None:intergenic 55.0%
TTCCACCCTCCCAGTCGTAT+CGG - chr3_3:75434936-75434955 Msa0472960:CDS 55.0%
AAACGCCGATACGACTGGGA+GGG + chr3_3:75434944-75434963 None:intergenic 55.0%
AAAACGCCGATACGACTGGG+AGG + chr3_3:75434945-75434964 None:intergenic 55.0%
GCCTTGAAACCGAGGTTCAG+TGG + chr3_3:75434990-75435009 None:intergenic 55.0%
!! CCTTCTTGGCCTTGAAACCG+AGG + chr3_3:75434998-75435017 None:intergenic 55.0%
CCTCGGTTTCAAGGCCAAGA+AGG - chr3_3:75434995-75435014 Msa0472960:CDS 55.0%
CCCTGTCATTGCTGCTGACA+AGG - chr3_3:75437201-75437220 Msa0472960:intron 55.0%
GCCTTGTCAGCAGCAATGAC+AGG + chr3_3:75437205-75437224 None:intergenic 55.0%
! AGCACAAGGCCTTGTAGGCA+TGG + chr3_3:75437324-75437343 None:intergenic 55.0%
! TCATTTGAGATACCGGGGGG+GGG - chr3_3:75437357-75437376 Msa0472960:intron 55.0%
!! GACCGGACAACGATTTGGTG+AGG - chr3_3:75437524-75437543 Msa0472960:CDS 55.0%
ATGCAGAGGAAGAGAGGAGG+AGG + chr3_3:75438511-75438530 None:intergenic 55.0%
CACATGCAGAGGAAGAGAGG+AGG + chr3_3:75438514-75438533 None:intergenic 55.0%
GCTAGCCGTTGATGTTCCCA+TGG - chr3_3:75438715-75438734 Msa0472960:CDS 55.0%
GCTGCCATTGCTTTCACCAC+AGG + chr3_3:75438827-75438846 None:intergenic 55.0%
!! GGATGCCAAAAGAGAGCGTC+AGG - chr3_3:75438889-75438908 Msa0472960:CDS 55.0%
!! TGCCAAAAGAGAGCGTCAGG+AGG - chr3_3:75438892-75438911 Msa0472960:CDS 55.0%
TGGGCGAATGCCCAATGTCA+AGG - chr3_3:75439254-75439273 Msa0472960:five_prime_UTR 55.0%
!! AAGGGTGGCGGAGGAAGAGT+TGG + chr3_3:75434815-75434834 None:intergenic 60.0%
GTGCGGAAGTGAAAGGGTGG+CGG + chr3_3:75434827-75434846 None:intergenic 60.0%
! GAGGGGGTGCGGAAGTGAAA+GGG + chr3_3:75434833-75434852 None:intergenic 60.0%
GAGTGGTGAAGTGGAGGAGG+GGG + chr3_3:75434849-75434868 None:intergenic 60.0%
TCTGGAGAAACCTACGGCCG+CGG - chr3_3:75435019-75435038 Msa0472960:CDS 60.0%
CGTGAAAGCAGAGGTCACCG+CGG + chr3_3:75435039-75435058 None:intergenic 60.0%
CGGTGACCTCTGCTTTCACG+CGG - chr3_3:75435039-75435058 Msa0472960:CDS 60.0%
ACGGTACCGCGTGAAAGCAG+AGG + chr3_3:75435048-75435067 None:intergenic 60.0%
TGCTTTCACGCGGTACCGTG+AGG - chr3_3:75435049-75435068 Msa0472960:CDS 60.0%
GCCTATGTGATGTCAGGGGG+TGG - chr3_3:75436330-75436349 Msa0472960:intron 60.0%
GCCACCCCCTGACATCACAT+AGG + chr3_3:75436334-75436353 None:intergenic 60.0%
TGGTCTGGGCCAGAAGCCAT+GGG + chr3_3:75438734-75438753 None:intergenic 60.0%
!! GGTGGCGGAGGAAGAGTTGG+TGG + chr3_3:75434812-75434831 None:intergenic 65.0%
! CGGAAGTGAAAGGGTGGCGG+AGG + chr3_3:75434824-75434843 None:intergenic 65.0%
GGGGTGCGGAAGTGAAAGGG+TGG + chr3_3:75434830-75434849 None:intergenic 65.0%
! GGAGGGGGTGCGGAAGTGAA+AGG + chr3_3:75434834-75434853 None:intergenic 65.0%
GTGAAGTGGAGGAGGGGGTG+CGG + chr3_3:75434844-75434863 None:intergenic 65.0%
GTTATGGGCGCCCCCCTTAC+AGG - chr3_3:75436294-75436313 Msa0472960:intron 65.0%
CTGGTCTGGGCCAGAAGCCA+TGG + chr3_3:75438735-75438754 None:intergenic 65.0%
CGCCGATACGACTGGGAGGG+TGG + chr3_3:75434941-75434960 None:intergenic 70.0%
CACGCGGTACCGTGAGGCCA+TGG - chr3_3:75435055-75435074 Msa0472960:CDS 70.0%
ACGGTGAAGAGTCCCCCCCC+CGG + chr3_3:75437372-75437391 None:intergenic 70.0%
GCAGAGGTCACCGCGGCCGT+AGG + chr3_3:75435032-75435051 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75434590 75439302 75434590 ID=Msa0472960;Name=Msa0472960
chr3_3 mRNA 75434590 75439302 75434590 ID=Msa0472960-mRNA-1;Parent=Msa0472960;Name=Msa0472960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=166|1|1|1|1|1|3|329|349
chr3_3 exon 75434590 75435191 75434590 ID=Msa0472960-mRNA-1:exon:19568;Parent=Msa0472960-mRNA-1
chr3_3 exon 75437419 75437691 75437419 ID=Msa0472960-mRNA-1:exon:19567;Parent=Msa0472960-mRNA-1
chr3_3 exon 75438633 75439302 75438633 ID=Msa0472960-mRNA-1:exon:19566;Parent=Msa0472960-mRNA-1
chr3_3 five_prime_UTR 75439137 75439302 75439137 ID=Msa0472960-mRNA-1:five_prime_utr;Parent=Msa0472960-mRNA-1
chr3_3 CDS 75438633 75439136 75438633 ID=Msa0472960-mRNA-1:cds;Parent=Msa0472960-mRNA-1
chr3_3 CDS 75437419 75437691 75437419 ID=Msa0472960-mRNA-1:cds;Parent=Msa0472960-mRNA-1
chr3_3 CDS 75434919 75435191 75434919 ID=Msa0472960-mRNA-1:cds;Parent=Msa0472960-mRNA-1
chr3_3 three_prime_UTR 75434590 75434918 75434590 ID=Msa0472960-mRNA-1:three_prime_utr;Parent=Msa0472960-mRNA-1
Gene Sequence

>Msa0472960

ATGCAAATGTCAAGAACAAAATGCGGTGGTTGTTCACAACGAATCACCCAACTCCACCAACTCTTCCTCCGCCACCCTTTCACTTCCGCACCCCCTCCTCCACTTCACCACTCTTCAAAATTACTACCCACACCCCACCCTAAATCCATCCTCTCTTCCTTCCTCCATTCACCCCCAATTTTCCACCCTCCCAGTCGTATCGGCGTTTTCAGATTCTTCTCTTCAAAGCCACCACTGAACCTCGGTTTCAAGGCCAAGAAGGTTCTGGAGAAACCTACGGCCGCGGTGACCTCTGCTTTCACGCGGTACCGTGAGGCCATGGTTTTGCAACTTGAGGCTTTCTTCAAAAGGAATAACCTTTTTCTGTTTGGTGCTGCTGGGGTTGTTCTTTGTGCTATTCTTTGGAGGATTATGTTTGGTATTGCTAATACTTTTGTTGTTCTTTCTGAAGGCATGGCTAAGTATGGTTTCTTATCCCTTTCTGCTGCTATTGTTGCTTTTACTGGTTTGTATATCCGCTCAAGGCACACAATCAACCCTGATAAAGTTTATAGAATGGCCATGACAAGACTTAACACATCTGCTCAGATTCTTGAAGTTATGGGCGCCCCCCTTACAGGAACTGATTTAAGAGCCTATGTGATGTCAGGGGGTGGCCTTACGTTAAAGAAAATCAAGCCAAGTCTTAGGAGCAAACGTTGTTTTCTCATTTTCCCCATAAAAGGTTCTGAGAGAAAGGGTCTAGTGAATGTTGAAGTCAAGAAAAAACAGGGCAAGTATGATATGAAGCTGCTAGCCGTTGATGTTCCCATGGCTTCTGGCCCAGACCAGCGTTTGTATCTGATTGGAAATGAAAAAGAGTACACGGTTGGTGGGGGACTGATATCTGATCTAAGAGACCCTGTGGTGAAAGCAATGGCAGCAACCAAAGAATTTGATGATCTTGATGAGATTGAGGATGAGGAGGATGCCAAAAGAGAGCGTCAGGAGGTTGAACGAAAGCATCGAGAAGAAGTTGAGAAGGTTGAAAATAGTGGTACCAAGCAATAA

Protein sequence

>Msa0472960

MQMSRTKCGGCSQRITQLHQLFLRHPFTSAPPPPLHHSSKLLPTPHPKSILSSFLHSPPIFHPPSRIGVFRFFSSKPPLNLGFKAKKVLEKPTAAVTSAFTRYREAMVLQLEAFFKRNNLFLFGAAGVVLCAILWRIMFGIANTFVVLSEGMAKYGFLSLSAAIVAFTGLYIRSRHTINPDKVYRMAMTRLNTSAQILEVMGAPLTGTDLRAYVMSGGGLTLKKIKPSLRSKRCFLIFPIKGSERKGLVNVEVKKKQGKYDMKLLAVDVPMASGPDQRLYLIGNEKEYTVGGGLISDLRDPVVKAMAATKEFDDLDEIEDEEDAKRERQEVERKHREEVEKVENSGTKQ*