Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760940 | sp|Q0JKZ0|SNL6_ORYSJ | 33.227 | 313 | 170 | 10 | 10 | 293 | 60 | 362 | 1.68e-46 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760940 | G7KDR3 | 98.993 | 298 | 3 | 0 | 1 | 298 | 1 | 298 | 0.0 | 621 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100800 | Msa0760940 | 0.811012 | 8.660758e-51 | -8.615850e-47 |
| Msa0720370 | Msa0760940 | 0.861411 | 1.045481e-63 | -8.615850e-47 |
| Msa0265160 | Msa0760940 | 0.815601 | 8.501786e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760940 | MtrunA17_Chr5g0411071 | 98.993 | 298 | 3 | 0 | 1 | 298 | 1 | 298 | 0.0 | 621 |
| Msa0760940 | MtrunA17_Chr6g0450211 | 31.373 | 306 | 186 | 8 | 6 | 293 | 49 | 348 | 1.99e-49 | 167 |
| Msa0760940 | MtrunA17_Chr2g0333781 | 31.475 | 305 | 190 | 9 | 4 | 296 | 12 | 309 | 6.38e-38 | 137 |
| Msa0760940 | MtrunA17_Chr3g0077231 | 28.990 | 307 | 194 | 9 | 7 | 296 | 1 | 300 | 3.25e-36 | 132 |
| Msa0760940 | MtrunA17_Chr5g0431311 | 30.392 | 306 | 187 | 8 | 9 | 296 | 2 | 299 | 1.12e-35 | 130 |
| Msa0760940 | MtrunA17_Chr4g0002661 | 31.169 | 308 | 172 | 10 | 12 | 296 | 13 | 303 | 9.26e-35 | 128 |
| Msa0760940 | MtrunA17_Chr3g0077221 | 27.723 | 303 | 197 | 7 | 10 | 296 | 8 | 304 | 1.29e-34 | 128 |
| Msa0760940 | MtrunA17_Chr4g0001321 | 31.410 | 312 | 189 | 10 | 3 | 296 | 2 | 306 | 7.78e-34 | 126 |
| Msa0760940 | MtrunA17_Chr8g0364051 | 31.046 | 306 | 180 | 10 | 11 | 296 | 7 | 301 | 3.77e-33 | 124 |
| Msa0760940 | MtrunA17_Chr8g0363831 | 28.763 | 299 | 194 | 6 | 12 | 296 | 9 | 302 | 2.95e-32 | 121 |
| Msa0760940 | MtrunA17_Chr2g0331211 | 30.451 | 266 | 169 | 5 | 10 | 260 | 3 | 267 | 3.60e-32 | 121 |
| Msa0760940 | MtrunA17_Chr3g0106111 | 28.990 | 307 | 190 | 9 | 9 | 296 | 2 | 299 | 4.36e-32 | 121 |
| Msa0760940 | MtrunA17_Chr1g0155431 | 29.747 | 316 | 180 | 11 | 9 | 297 | 5 | 305 | 7.15e-32 | 120 |
| Msa0760940 | MtrunA17_Chr1g0155411 | 30.216 | 278 | 161 | 10 | 9 | 263 | 5 | 272 | 3.74e-31 | 119 |
| Msa0760940 | MtrunA17_Chr4g0039321 | 27.687 | 307 | 188 | 10 | 12 | 296 | 9 | 303 | 1.66e-29 | 114 |
| Msa0760940 | MtrunA17_Chr4g0039311 | 27.152 | 302 | 196 | 8 | 12 | 296 | 11 | 305 | 1.78e-29 | 114 |
| Msa0760940 | MtrunA17_Chr5g0423551 | 26.829 | 246 | 162 | 6 | 13 | 243 | 5 | 247 | 1.97e-29 | 114 |
| Msa0760940 | MtrunA17_Chr4g0002961 | 30.769 | 260 | 153 | 6 | 12 | 252 | 13 | 264 | 6.80e-27 | 107 |
| Msa0760940 | MtrunA17_Chr7g0245741 | 28.253 | 269 | 167 | 7 | 12 | 260 | 8 | 270 | 8.96e-27 | 107 |
| Msa0760940 | MtrunA17_Chr7g0245731 | 28.253 | 269 | 167 | 6 | 12 | 260 | 58 | 320 | 1.70e-26 | 107 |
| Msa0760940 | MtrunA17_Chr7g0245691 | 32.804 | 189 | 108 | 7 | 12 | 187 | 8 | 190 | 1.23e-24 | 101 |
| Msa0760940 | MtrunA17_Chr7g0245671 | 28.897 | 263 | 160 | 9 | 12 | 252 | 8 | 265 | 1.40e-24 | 101 |
| Msa0760940 | MtrunA17_Chr7g0245641 | 30.846 | 201 | 126 | 6 | 12 | 202 | 45 | 242 | 5.09e-24 | 100 |
| Msa0760940 | MtrunA17_Chr7g0245631 | 27.820 | 266 | 172 | 5 | 12 | 260 | 8 | 270 | 1.53e-23 | 98.2 |
| Msa0760940 | MtrunA17_Chr2g0291541 | 29.572 | 257 | 153 | 9 | 12 | 247 | 10 | 259 | 5.47e-23 | 96.7 |
| Msa0760940 | MtrunA17_Chr4g0042101 | 27.476 | 313 | 185 | 13 | 13 | 292 | 25 | 328 | 2.12e-22 | 95.5 |
| Msa0760940 | MtrunA17_Chr4g0010991 | 31.461 | 178 | 107 | 5 | 11 | 177 | 7 | 180 | 9.15e-20 | 87.8 |
| Msa0760940 | MtrunA17_Chr7g0245711 | 26.667 | 225 | 150 | 4 | 48 | 260 | 11 | 232 | 1.61e-18 | 83.6 |
| Msa0760940 | MtrunA17_Chr2g0282001 | 22.826 | 276 | 178 | 7 | 12 | 254 | 7 | 280 | 1.54e-14 | 73.2 |
| Msa0760940 | MtrunA17_Chr2g0281991 | 25.294 | 170 | 117 | 5 | 12 | 171 | 8 | 177 | 1.77e-11 | 63.9 |
| Msa0760940 | MtrunA17_Chr7g0275521 | 25.676 | 148 | 104 | 3 | 12 | 153 | 7 | 154 | 2.62e-11 | 63.5 |
| Msa0760940 | MtrunA17_Chr2g0282011 | 24.118 | 170 | 119 | 4 | 12 | 171 | 8 | 177 | 6.05e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760940 | AT2G23910.1 | 44.816 | 299 | 146 | 7 | 8 | 293 | 6 | 298 | 1.04e-86 | 262 |
| Msa0760940 | AT4G30470.1 | 43.667 | 300 | 151 | 6 | 6 | 293 | 4 | 297 | 4.06e-84 | 255 |
| Msa0760940 | AT2G23910.2 | 46.617 | 266 | 128 | 5 | 8 | 263 | 6 | 267 | 8.81e-83 | 251 |
| Msa0760940 | AT2G23910.3 | 46.617 | 266 | 128 | 5 | 8 | 263 | 6 | 267 | 9.18e-83 | 251 |
| Msa0760940 | AT2G23910.4 | 44.574 | 258 | 128 | 6 | 45 | 293 | 13 | 264 | 2.24e-73 | 227 |
| Msa0760940 | AT5G14700.1 | 30.323 | 310 | 193 | 8 | 6 | 293 | 49 | 357 | 2.01e-40 | 144 |
| Msa0760940 | AT1G51410.1 | 31.353 | 303 | 184 | 8 | 11 | 296 | 8 | 303 | 3.29e-37 | 135 |
| Msa0760940 | AT5G58490.1 | 30.592 | 304 | 185 | 7 | 11 | 296 | 8 | 303 | 5.12e-37 | 134 |
| Msa0760940 | AT2G02400.1 | 30.769 | 299 | 177 | 10 | 7 | 281 | 1 | 293 | 1.77e-34 | 127 |
| Msa0760940 | AT1G09510.1 | 31.783 | 258 | 154 | 7 | 12 | 252 | 8 | 260 | 2.58e-34 | 127 |
| Msa0760940 | AT5G19440.1 | 29.801 | 302 | 188 | 8 | 12 | 296 | 10 | 304 | 3.31e-34 | 127 |
| Msa0760940 | AT4G35420.1 | 27.687 | 307 | 191 | 7 | 5 | 297 | 1 | 290 | 1.60e-33 | 125 |
| Msa0760940 | AT1G09480.2 | 28.525 | 305 | 188 | 8 | 12 | 296 | 8 | 302 | 7.16e-32 | 120 |
| Msa0760940 | AT1G80820.1 | 30.592 | 304 | 180 | 9 | 12 | 297 | 8 | 298 | 7.73e-32 | 121 |
| Msa0760940 | AT1G15950.3 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 8.17e-32 | 121 |
| Msa0760940 | AT1G15950.1 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 8.17e-32 | 121 |
| Msa0760940 | AT1G15950.2 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 8.40e-32 | 121 |
| Msa0760940 | AT1G09480.1 | 28.525 | 305 | 188 | 8 | 12 | 296 | 55 | 349 | 1.66e-31 | 120 |
| Msa0760940 | AT1G15950.4 | 31.615 | 291 | 177 | 10 | 11 | 289 | 12 | 292 | 4.66e-31 | 118 |
| Msa0760940 | AT1G80820.2 | 33.735 | 249 | 135 | 8 | 12 | 242 | 8 | 244 | 9.58e-31 | 116 |
| Msa0760940 | AT2G33600.1 | 30.619 | 307 | 178 | 8 | 7 | 292 | 4 | 296 | 2.02e-30 | 117 |
| Msa0760940 | AT1G15950.6 | 31.698 | 265 | 162 | 8 | 11 | 263 | 12 | 269 | 2.26e-30 | 115 |
| Msa0760940 | AT1G15950.5 | 31.698 | 265 | 162 | 8 | 11 | 263 | 12 | 269 | 2.98e-30 | 115 |
| Msa0760940 | AT2G33590.1 | 29.773 | 309 | 180 | 9 | 6 | 292 | 3 | 296 | 3.25e-30 | 116 |
| Msa0760940 | AT1G09490.1 | 29.085 | 306 | 189 | 9 | 10 | 296 | 6 | 302 | 1.31e-29 | 115 |
| Msa0760940 | AT1G66800.1 | 30.483 | 269 | 160 | 7 | 12 | 263 | 8 | 266 | 1.36e-28 | 112 |
| Msa0760940 | AT1G68540.1 | 27.236 | 246 | 161 | 6 | 14 | 243 | 6 | 249 | 1.92e-27 | 108 |
| Msa0760940 | AT5G42800.1 | 31.538 | 260 | 146 | 9 | 10 | 246 | 6 | 256 | 2.21e-27 | 110 |
| Msa0760940 | AT4G27250.2 | 25.723 | 311 | 201 | 9 | 11 | 297 | 12 | 316 | 4.43e-25 | 103 |
| Msa0760940 | AT1G25460.1 | 27.132 | 258 | 164 | 9 | 25 | 263 | 17 | 269 | 6.07e-25 | 102 |
| Msa0760940 | AT4G27250.1 | 32.105 | 190 | 116 | 5 | 11 | 187 | 12 | 201 | 1.06e-24 | 102 |
| Msa0760940 | AT1G09500.3 | 28.016 | 257 | 166 | 5 | 12 | 252 | 8 | 261 | 4.21e-24 | 99.4 |
| Msa0760940 | AT1G09500.1 | 28.016 | 257 | 166 | 5 | 12 | 252 | 8 | 261 | 1.06e-23 | 99.0 |
| Msa0760940 | AT5G14700.2 | 29.493 | 217 | 137 | 5 | 6 | 206 | 49 | 265 | 1.82e-23 | 97.8 |
| Msa0760940 | AT1G09490.2 | 30.088 | 226 | 135 | 7 | 56 | 266 | 25 | 242 | 4.40e-22 | 94.0 |
| Msa0760940 | AT1G61720.1 | 27.099 | 262 | 159 | 7 | 9 | 243 | 10 | 266 | 9.78e-22 | 94.0 |
| Msa0760940 | AT1G76470.1 | 27.362 | 307 | 194 | 10 | 10 | 296 | 5 | 302 | 3.29e-20 | 89.4 |
| Msa0760940 | AT2G45400.1 | 25.749 | 334 | 189 | 11 | 3 | 297 | 31 | 344 | 2.29e-18 | 84.7 |
| Msa0760940 | AT2G45400.2 | 26.545 | 275 | 157 | 7 | 2 | 243 | 30 | 292 | 7.97e-18 | 82.8 |
| Msa0760940 | AT1G68540.2 | 27.632 | 152 | 100 | 3 | 110 | 252 | 1 | 151 | 1.14e-17 | 80.5 |
| Msa0760940 | AT2G45400.4 | 28.505 | 214 | 137 | 4 | 3 | 202 | 31 | 242 | 1.95e-17 | 80.5 |
| Msa0760940 | AT1G09500.2 | 27.273 | 209 | 137 | 4 | 56 | 252 | 22 | 227 | 6.39e-16 | 77.0 |
| Msa0760940 | AT1G15950.7 | 28.986 | 207 | 136 | 5 | 98 | 296 | 1 | 204 | 4.35e-15 | 73.9 |
Find 93 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCTTTGCCCTTTGGTTT+GGG | 0.127514 | 5_2:+17792698 | Msa0760940:five_prime_UTR |
| CGTCTCTTTGCCCTTTGGTT+TGG | 0.260577 | 5_2:+17792697 | Msa0760940:five_prime_UTR |
| GGTGATGTTTGTGTGTGTTT+TGG | 0.264785 | 5_2:-17796160 | None:intergenic |
| ATAACCTTTAGTTGTTCTTC+TGG | 0.275125 | 5_2:+17795934 | Msa0760940:three_prime_UTR |
| AAAGAGTGTGCAGGGTAGAT+AGG | 0.314810 | 5_2:-17792766 | None:intergenic |
| GTCTTTGTGACCGTTGATTT+AGG | 0.322077 | 5_2:+17795470 | Msa0760940:CDS |
| GGTAGTTGTAGTTTGATAGA+TGG | 0.325492 | 5_2:-17792734 | None:intergenic |
| AATGATGAAAATAAAATTGT+TGG | 0.327886 | 5_2:-17792900 | None:intergenic |
| TAGATTATATAAAGAAGGTT+AGG | 0.335064 | 5_2:-17792809 | None:intergenic |
| TAGGAACACACAAACAAATA+TGG | 0.346507 | 5_2:+17792939 | Msa0760940:exon |
| CTATCCGTCTCTTTGCCCTT+TGG | 0.360166 | 5_2:+17792692 | Msa0760940:five_prime_UTR |
| CATGCATCCATTCAACAATA+TGG | 0.361898 | 5_2:+17793066 | Msa0760940:CDS |
| TAAGACCATAGAACCTGATT+TGG | 0.363147 | 5_2:+17794623 | Msa0760940:CDS |
| TTCATCCAAATCAGGTTCTA+TGG | 0.374831 | 5_2:-17794628 | None:intergenic |
| TCATAATTGGGTTGATCAAA+GGG | 0.375428 | 5_2:-17793403 | None:intergenic |
| AGCATAATTGACGCTCTTAG+AGG | 0.376610 | 5_2:+17793349 | Msa0760940:CDS |
| CAATGTATTTCATCCAAATC+AGG | 0.379342 | 5_2:-17794636 | None:intergenic |
| CGGTAATGAACAGGAATATA+TGG | 0.382600 | 5_2:+17794485 | Msa0760940:intron |
| TAACCTTTAGTTGTTCTTCT+GGG | 0.386713 | 5_2:+17795935 | Msa0760940:three_prime_UTR |
| ATTTCTCATATTCTTCTACT+AGG | 0.390673 | 5_2:+17792920 | Msa0760940:five_prime_UTR |
| AATGGACAGAGGAGTAAATA+TGG | 0.399954 | 5_2:+17795358 | Msa0760940:CDS |
| GTTTGTGTCATGGATGCTTC+AGG | 0.401929 | 5_2:+17792991 | Msa0760940:CDS |
| CCTCCGCAACTGCTGTGGTT+TGG | 0.409242 | 5_2:+17794589 | Msa0760940:CDS |
| AGATTATATAAAGAAGGTTA+GGG | 0.412002 | 5_2:-17792808 | None:intergenic |
| AGAGTTAGATTATATAAAGA+AGG | 0.419790 | 5_2:-17792814 | None:intergenic |
| TTCTTGTGCAGTGATGACTA+TGG | 0.421555 | 5_2:+17795797 | Msa0760940:intron |
| ATGGATGCTTCAGGTCAATT+AGG | 0.424212 | 5_2:+17793000 | Msa0760940:CDS |
| GACGCTCTTAGAGGTTGCTC+TGG | 0.430578 | 5_2:+17793358 | Msa0760940:CDS |
| CCGCAACTGCTGTGGTTTGG+AGG | 0.433210 | 5_2:+17794592 | Msa0760940:CDS |
| TCAGCAGCTCCTCTCAAGTA+AGG | 0.433540 | 5_2:-17795431 | None:intergenic |
| ATTATGCTATGATAATCAAA+AGG | 0.437929 | 5_2:-17793334 | None:intergenic |
| CAAATTGATGGTGGACTTTG+AGG | 0.440060 | 5_2:+17795862 | Msa0760940:CDS |
| CACAAATACAATTTAGATGC+AGG | 0.440884 | 5_2:-17796181 | None:intergenic |
| CAAGAAGTTGAACAAATTGA+TGG | 0.442655 | 5_2:+17795850 | Msa0760940:CDS |
| CTCTTTGCCCTTTGGTTTGG+GGG | 0.453558 | 5_2:+17792700 | Msa0760940:five_prime_UTR |
| ATCATAATTGGGTTGATCAA+AGG | 0.460198 | 5_2:-17793404 | None:intergenic |
| ACTTTGAGGCTTAACTTCAA+TGG | 0.467815 | 5_2:+17795876 | Msa0760940:exon |
| TCTCAAGTAAGGGTGTTTGA+TGG | 0.471366 | 5_2:-17795420 | None:intergenic |
| CAATTTCTGTCGCAAATTCA+AGG | 0.478165 | 5_2:+17794668 | Msa0760940:CDS |
| AGTGTGCAGGGTAGATAGGT+AGG | 0.487903 | 5_2:-17792762 | None:intergenic |
| GCAGGAGAAGATCCATTCAA+TGG | 0.492642 | 5_2:+17793268 | Msa0760940:intron |
| TCAGCTGAAATCCCATTGAA+TGG | 0.493043 | 5_2:-17793280 | None:intergenic |
| ATAATTAAGTCATACCTTTG+TGG | 0.493819 | 5_2:-17795635 | None:intergenic |
| CGCAACTGCTGTGGTTTGGA+GGG | 0.495829 | 5_2:+17794593 | Msa0760940:CDS |
| TACTCCTCTGTCCATTGCTA+AGG | 0.497399 | 5_2:-17795351 | None:intergenic |
| TCTCTTTGCCCTTTGGTTTG+GGG | 0.501415 | 5_2:+17792699 | Msa0760940:five_prime_UTR |
| TAAGTCATACCTTTGTGGTA+AGG | 0.502740 | 5_2:-17795630 | None:intergenic |
| TGCAGGGTAGATAGGTAGGA+AGG | 0.505127 | 5_2:-17792758 | None:intergenic |
| GCTTAACTTCAATGGTTAAG+TGG | 0.507680 | 5_2:+17795884 | Msa0760940:exon |
| GTTCAAAGACTTCTTCAAAG+AGG | 0.517969 | 5_2:+17793033 | Msa0760940:CDS |
| CACATCCTCCGCAACTGCTG+TGG | 0.524456 | 5_2:+17794584 | Msa0760940:CDS |
| CCTCCAAACCACAGCAGTTG+CGG | 0.528661 | 5_2:-17794592 | None:intergenic |
| AATATGGTATCAATCAATGC+TGG | 0.529177 | 5_2:+17795374 | Msa0760940:CDS |
| CAGGAGAAGATCCATTCAAT+GGG | 0.530786 | 5_2:+17793269 | Msa0760940:intron |
| TTATGCTATGATAATCAAAA+GGG | 0.531153 | 5_2:-17793333 | None:intergenic |
| AACCTTTAGTTGTTCTTCTG+GGG | 0.537641 | 5_2:+17795936 | Msa0760940:three_prime_UTR |
| TGTTGTAAGAAAGAAAAGAA+AGG | 0.537679 | 5_2:-17792839 | None:intergenic |
| TGACTAGTTATGTCAAAAGA+AGG | 0.541260 | 5_2:-17792964 | None:intergenic |
| AATTTGTTGTATATAACATG+TGG | 0.541455 | 5_2:-17796004 | None:intergenic |
| AACGCATTGAAAGAGTGTGC+AGG | 0.545190 | 5_2:-17792775 | None:intergenic |
| CATAATTGGGTTGATCAAAG+GGG | 0.545250 | 5_2:-17793402 | None:intergenic |
| ATATGTACCATATTGTTGAA+TGG | 0.548967 | 5_2:-17793073 | None:intergenic |
| ACCTTTAGTTGTTCTTCTGG+GGG | 0.549364 | 5_2:+17795937 | Msa0760940:three_prime_UTR |
| CTGATTTGGATGAAATACAT+TGG | 0.555033 | 5_2:+17794637 | Msa0760940:CDS |
| ATTTGTTGTATATAACATGT+GGG | 0.566143 | 5_2:-17796003 | None:intergenic |
| ACAAACAAACAGTTATGGCA+TGG | 0.567066 | 5_2:+17795293 | Msa0760940:intron |
| TACGAGGATGTCTCATCGTA+CGG | 0.580649 | 5_2:+17795521 | Msa0760940:CDS |
| AACAGCGTTTGCCTTAGCAA+TGG | 0.587609 | 5_2:+17795340 | Msa0760940:CDS |
| CAAACCAAAGGGCAAAGAGA+CGG | 0.591214 | 5_2:-17792696 | None:intergenic |
| CAGCAGCTCCTCTCAAGTAA+GGG | 0.598914 | 5_2:-17795430 | None:intergenic |
| GTCAAAAGTAAAAGTAACAA+CGG | 0.600705 | 5_2:-17796110 | None:intergenic |
| ATCAAACACCCTTACTTGAG+AGG | 0.605366 | 5_2:+17795422 | Msa0760940:CDS |
| TTTGAAGAAGTCTTTGAACA+AGG | 0.606201 | 5_2:-17793029 | None:intergenic |
| CAAACAAACAGTTATGGCAT+GGG | 0.606327 | 5_2:+17795294 | Msa0760940:intron |
| TAGTCATACTGTTTGTGTCA+TGG | 0.607789 | 5_2:+17792981 | Msa0760940:CDS |
| GAAGTTGAACAAATTGATGG+TGG | 0.609068 | 5_2:+17795853 | Msa0760940:CDS |
| TAACTTATGTGCAAGCTGAA+CGG | 0.619871 | 5_2:-17795588 | None:intergenic |
| AGGGTAGATAGGTAGGAAGG+AGG | 0.620157 | 5_2:-17792755 | None:intergenic |
| ATAATTGGGTTGATCAAAGG+GGG | 0.628240 | 5_2:-17793401 | None:intergenic |
| CCAAACCACAGCAGTTGCGG+AGG | 0.635300 | 5_2:-17794589 | None:intergenic |
| TTGTTGAATGGATGCATGAA+CGG | 0.636150 | 5_2:-17793061 | None:intergenic |
| ACGCATTGAAAGAGTGTGCA+GGG | 0.642204 | 5_2:-17792774 | None:intergenic |
| GATTATATAAAGAAGGTTAG+GGG | 0.655106 | 5_2:-17792807 | None:intergenic |
| TTGTGGTAAGGATGAAGATG+CGG | 0.672000 | 5_2:-17795618 | None:intergenic |
| CATCTTCATCCTTACCACAA+AGG | 0.680099 | 5_2:+17795621 | Msa0760940:CDS |
| TATATAAAGAAGGTTAGGGG+CGG | 0.680845 | 5_2:-17792804 | None:intergenic |
| TTTGCCTTAGCAATGGACAG+AGG | 0.681382 | 5_2:+17795347 | Msa0760940:CDS |
| TACTCACATCTGTGTCTACG+AGG | 0.683844 | 5_2:+17795505 | Msa0760940:CDS |
| GCTGCTGAAATGTACGAGGA+TGG | 0.684788 | 5_2:+17795446 | Msa0760940:CDS |
| ACAGGAATATATGGCTGACG+TGG | 0.685182 | 5_2:+17794494 | Msa0760940:intron |
| GGTAAGGATGAAGATGCGGT+AGG | 0.690457 | 5_2:-17795614 | None:intergenic |
| TAATTGGGTTGATCAAAGGG+GGG | 0.721473 | 5_2:-17793400 | None:intergenic |
| AGGAGCTGCTGAAATGTACG+AGG | 0.764112 | 5_2:+17795442 | Msa0760940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATTAAAAAGTTAAAAA+GGG | - | chr5_2:17793449-17793468 | None:intergenic | 10.0% |
| !! | AAAAGATTAAAAAGTTAAAA+AGG | - | chr5_2:17793450-17793469 | None:intergenic | 10.0% |
| !!! | TTTTATAGAAATTTGTATTT+TGG | + | chr5_2:17793617-17793636 | Msa0760940:intron | 10.0% |
| !!! | CATTTTTGTTTAAATTTAAT+AGG | + | chr5_2:17794888-17794907 | Msa0760940:intron | 10.0% |
| !! | AATGATGAAAATAAAATTGT+TGG | - | chr5_2:17792903-17792922 | None:intergenic | 15.0% |
| !! | AAAATTTGTAACATAAACAT+TGG | - | chr5_2:17793579-17793598 | None:intergenic | 15.0% |
| !!! | TCATTTTTTCTATATTCAAT+AGG | - | chr5_2:17795256-17795275 | None:intergenic | 15.0% |
| !!! | TCAAACATTTTAACTTATAA+AGG | + | chr5_2:17795662-17795681 | Msa0760940:intron | 15.0% |
| !!! | TTTATTTGATTTTGACTATA+TGG | + | chr5_2:17795746-17795765 | Msa0760940:intron | 15.0% |
| !! | TAGAAAAGAAAAAAGAGAAA+GGG | - | chr5_2:17792675-17792694 | None:intergenic | 20.0% |
| !! | ATAGAAAAGAAAAAAGAGAA+AGG | - | chr5_2:17792676-17792695 | None:intergenic | 20.0% |
| !! | AGATTATATAAAGAAGGTTA+GGG | - | chr5_2:17792811-17792830 | None:intergenic | 20.0% |
| !! | TAGATTATATAAAGAAGGTT+AGG | - | chr5_2:17792812-17792831 | None:intergenic | 20.0% |
| !! | AGAGTTAGATTATATAAAGA+AGG | - | chr5_2:17792817-17792836 | None:intergenic | 20.0% |
| !!! | GTTATTAACTGCTTTTTTTT+TGG | + | chr5_2:17793099-17793118 | Msa0760940:intron | 20.0% |
| !! | ATTCACATTAAATGAATAAG+TGG | + | chr5_2:17793126-17793145 | Msa0760940:intron | 20.0% |
| !! | TTATGCTATGATAATCAAAA+GGG | - | chr5_2:17793336-17793355 | None:intergenic | 20.0% |
| !! | ATTATGCTATGATAATCAAA+AGG | - | chr5_2:17793337-17793356 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTACATCATAATT+GGG | - | chr5_2:17793418-17793437 | None:intergenic | 20.0% |
| !! | AAGCACTAATACAAATTTAA+AGG | - | chr5_2:17793787-17793806 | None:intergenic | 20.0% |
| !! | CTAAGCAAATTATTGTAATT+TGG | + | chr5_2:17793960-17793979 | Msa0760940:intron | 20.0% |
| !! | TTAAATGACTAAGACATATT+TGG | - | chr5_2:17794043-17794062 | None:intergenic | 20.0% |
| !! | AAAAACAAATACTTCTACAT+GGG | - | chr5_2:17794410-17794429 | None:intergenic | 20.0% |
| !! | TAAAAACAAATACTTCTACA+TGG | - | chr5_2:17794411-17794430 | None:intergenic | 20.0% |
| !! | TATACTTTAAACATTGTGTT+TGG | + | chr5_2:17794704-17794723 | Msa0760940:intron | 20.0% |
| !!! | ATAGGTTAAAGTTTGAAATT+TGG | + | chr5_2:17794906-17794925 | Msa0760940:intron | 20.0% |
| !!! | AAAGGTATGACTTAATTATA+TGG | + | chr5_2:17795639-17795658 | Msa0760940:intron | 20.0% |
| !!! | ATTTGTTGTATATAACATGT+GGG | - | chr5_2:17796006-17796025 | None:intergenic | 20.0% |
| !!! | AATTTGTTGTATATAACATG+TGG | - | chr5_2:17796007-17796026 | None:intergenic | 20.0% |
| !!! | TTACTTTTGACAAAATAAAG+TGG | + | chr5_2:17796122-17796141 | Msa0760940:three_prime_UTR | 20.0% |
| !!! | TACTTTTGACAAAATAAAGT+GGG | + | chr5_2:17796123-17796142 | Msa0760940:three_prime_UTR | 20.0% |
| ! | GATTATATAAAGAAGGTTAG+GGG | - | chr5_2:17792810-17792829 | None:intergenic | 25.0% |
| ! | TGTTGTAAGAAAGAAAAGAA+AGG | - | chr5_2:17792842-17792861 | None:intergenic | 25.0% |
| ! | ATTTCTCATATTCTTCTACT+AGG | + | chr5_2:17792920-17792939 | Msa0760940:five_prime_UTR | 25.0% |
| ! | ATATGTACCATATTGTTGAA+TGG | - | chr5_2:17793076-17793095 | None:intergenic | 25.0% |
| !! | GTTTTTGCTTACATCATAAT+TGG | - | chr5_2:17793419-17793438 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTTAGTTGTCA+TGG | - | chr5_2:17793954-17793973 | None:intergenic | 25.0% |
| ! | TTGTTACTAATCAATCATGA+TGG | + | chr5_2:17794166-17794185 | Msa0760940:intron | 25.0% |
| !! | CAATGATCCAAATTTTGTTA+TGG | + | chr5_2:17794224-17794243 | Msa0760940:intron | 25.0% |
| !! | TAATTGATGATAACATGTGT+CGG | + | chr5_2:17794465-17794484 | Msa0760940:intron | 25.0% |
| ! | TAATGATTGAATAGAAGTCT+TGG | - | chr5_2:17794744-17794763 | None:intergenic | 25.0% |
| ! | TTAGAATCATCTGATCTTAT+CGG | - | chr5_2:17795126-17795145 | None:intergenic | 25.0% |
| !!! | GGTAATCAATCTATTTTTCA+TGG | - | chr5_2:17795201-17795220 | None:intergenic | 25.0% |
| !!! | GGTAATCAATCTATTTTTCA+TGG | - | chr5_2:17795201-17795220 | None:intergenic | 25.0% |
| ! | ATTGTACAAACAAACAGTTA+TGG | + | chr5_2:17795288-17795307 | Msa0760940:intron | 25.0% |
| ! | ATAATTAAGTCATACCTTTG+TGG | - | chr5_2:17795638-17795657 | None:intergenic | 25.0% |
| !!! | CTTATAAAGGTGTTCAAATA+AGG | + | chr5_2:17795675-17795694 | Msa0760940:intron | 25.0% |
| !!! | GTTCAAATAAGGTTGTTTTA+TGG | + | chr5_2:17795686-17795705 | Msa0760940:intron | 25.0% |
| !!! | GACTCATTCTTTTAGTTTTA+AGG | + | chr5_2:17795719-17795738 | Msa0760940:intron | 25.0% |
| ! | GTCAAAAGTAAAAGTAACAA+CGG | - | chr5_2:17796113-17796132 | None:intergenic | 25.0% |
| AAAAGAAAAAAGAGAAAGGG+TGG | - | chr5_2:17792672-17792691 | None:intergenic | 30.0% | |
| TAGGAACACACAAACAAATA+TGG | + | chr5_2:17792939-17792958 | Msa0760940:exon | 30.0% | |
| ! | TGACTAGTTATGTCAAAAGA+AGG | - | chr5_2:17792967-17792986 | None:intergenic | 30.0% |
| TTTGAAGAAGTCTTTGAACA+AGG | - | chr5_2:17793032-17793051 | None:intergenic | 30.0% | |
| CTCGATTGATAAGAATATTG+AGG | - | chr5_2:17793185-17793204 | None:intergenic | 30.0% | |
| !! | TCATAATTGGGTTGATCAAA+GGG | - | chr5_2:17793406-17793425 | None:intergenic | 30.0% |
| !! | ATCATAATTGGGTTGATCAA+AGG | - | chr5_2:17793407-17793426 | None:intergenic | 30.0% |
| TGATTCTAGATAGACTCTTA+GGG | - | chr5_2:17793554-17793573 | None:intergenic | 30.0% | |
| TTGATTCTAGATAGACTCTT+AGG | - | chr5_2:17793555-17793574 | None:intergenic | 30.0% | |
| AGTACTAGTATTCATCTTCT+TGG | + | chr5_2:17793641-17793660 | Msa0760940:intron | 30.0% | |
| AGAAGAAACTAGAGTTAAGA+GGG | - | chr5_2:17793892-17793911 | None:intergenic | 30.0% | |
| TAGAAGAAACTAGAGTTAAG+AGG | - | chr5_2:17793893-17793912 | None:intergenic | 30.0% | |
| TATGTCTTAGTCATTTAAGC+TGG | + | chr5_2:17794045-17794064 | Msa0760940:intron | 30.0% | |
| CAAGTTGCCATAACAAAATT+TGG | - | chr5_2:17794234-17794253 | None:intergenic | 30.0% | |
| AAGAGTTGCTACAAAAACAT+AGG | + | chr5_2:17794313-17794332 | Msa0760940:intron | 30.0% | |
| CAATGTATTTCATCCAAATC+AGG | - | chr5_2:17794639-17794658 | None:intergenic | 30.0% | |
| !! | CTGATTTGGATGAAATACAT+TGG | + | chr5_2:17794637-17794656 | Msa0760940:CDS | 30.0% |
| TTGATAAGATGATTCTGATG+TGG | + | chr5_2:17795062-17795081 | Msa0760940:intron | 30.0% | |
| AAGATCAGATGATTCTAATG+TGG | + | chr5_2:17795128-17795147 | Msa0760940:intron | 30.0% | |
| ! | TTTTTCATGGTTGTCTCAAT+AGG | - | chr5_2:17795222-17795241 | None:intergenic | 30.0% |
| AATATGGTATCAATCAATGC+TGG | + | chr5_2:17795374-17795393 | Msa0760940:CDS | 30.0% | |
| CACCAAAAATCCTAAATCAA+CGG | - | chr5_2:17795483-17795502 | None:intergenic | 30.0% | |
| CAAGAAGTTGAACAAATTGA+TGG | + | chr5_2:17795850-17795869 | Msa0760940:CDS | 30.0% | |
| ATAACCTTTAGTTGTTCTTC+TGG | + | chr5_2:17795934-17795953 | Msa0760940:three_prime_UTR | 30.0% | |
| TAACCTTTAGTTGTTCTTCT+GGG | + | chr5_2:17795935-17795954 | Msa0760940:three_prime_UTR | 30.0% | |
| CACAAATACAATTTAGATGC+AGG | - | chr5_2:17796184-17796203 | None:intergenic | 30.0% | |
| GGTAGTTGTAGTTTGATAGA+TGG | - | chr5_2:17792737-17792756 | None:intergenic | 35.0% | |
| TATATAAAGAAGGTTAGGGG+CGG | - | chr5_2:17792807-17792826 | None:intergenic | 35.0% | |
| TAGTCATACTGTTTGTGTCA+TGG | + | chr5_2:17792981-17793000 | Msa0760940:CDS | 35.0% | |
| GTTCAAAGACTTCTTCAAAG+AGG | + | chr5_2:17793033-17793052 | Msa0760940:CDS | 35.0% | |
| TTGTTGAATGGATGCATGAA+CGG | - | chr5_2:17793064-17793083 | None:intergenic | 35.0% | |
| CATGCATCCATTCAACAATA+TGG | + | chr5_2:17793066-17793085 | Msa0760940:CDS | 35.0% | |
| CTGTTGAAATTGTTCTCCTT+TGG | + | chr5_2:17793241-17793260 | Msa0760940:intron | 35.0% | |
| !! | ATAATTGGGTTGATCAAAGG+GGG | - | chr5_2:17793404-17793423 | None:intergenic | 35.0% |
| !! | CATAATTGGGTTGATCAAAG+GGG | - | chr5_2:17793405-17793424 | None:intergenic | 35.0% |
| AGCAAGCAAACACCATTTAT+TGG | + | chr5_2:17793821-17793840 | Msa0760940:intron | 35.0% | |
| ! | ACTCTAGTTTCTTCTACTTC+TGG | + | chr5_2:17793897-17793916 | Msa0760940:intron | 35.0% |
| ! | CTCTAGTTTCTTCTACTTCT+GGG | + | chr5_2:17793898-17793917 | Msa0760940:intron | 35.0% |
| GACTAAGACATATTTGGTCA+AGG | - | chr5_2:17794037-17794056 | None:intergenic | 35.0% | |
| TTTGATATTTGCACGCAATG+TGG | + | chr5_2:17794193-17794212 | Msa0760940:intron | 35.0% | |
| !!! | TGCAGTGTTTTAGTCAACTA+TGG | - | chr5_2:17794434-17794453 | None:intergenic | 35.0% |
| CGGTAATGAACAGGAATATA+TGG | + | chr5_2:17794485-17794504 | Msa0760940:intron | 35.0% | |
| TAAGACCATAGAACCTGATT+TGG | + | chr5_2:17794623-17794642 | Msa0760940:CDS | 35.0% | |
| TTCATCCAAATCAGGTTCTA+TGG | - | chr5_2:17794631-17794650 | None:intergenic | 35.0% | |
| CAATTTCTGTCGCAAATTCA+AGG | + | chr5_2:17794668-17794687 | Msa0760940:CDS | 35.0% | |
| GATTGAATAGAAGTCTTGGA+CGG | - | chr5_2:17794740-17794759 | None:intergenic | 35.0% | |
| TTGATCAGATGATTCTGATG+TGG | + | chr5_2:17794942-17794961 | Msa0760940:intron | 35.0% | |
| !!! | TGTGATTTTGATTGTCCGAT+CGG | + | chr5_2:17794988-17795007 | Msa0760940:intron | 35.0% |
| TCAGAATCATCTTATCCGAT+CGG | - | chr5_2:17795006-17795025 | None:intergenic | 35.0% | |
| ACAAACAAACAGTTATGGCA+TGG | + | chr5_2:17795293-17795312 | Msa0760940:intron | 35.0% | |
| CAAACAAACAGTTATGGCAT+GGG | + | chr5_2:17795294-17795313 | Msa0760940:intron | 35.0% | |
| AATGGACAGAGGAGTAAATA+TGG | + | chr5_2:17795358-17795377 | Msa0760940:CDS | 35.0% | |
| !!! | GACCGTTGATTTAGGATTTT+TGG | + | chr5_2:17795478-17795497 | Msa0760940:CDS | 35.0% |
| !!! | CGTTGATTTAGGATTTTTGG+TGG | + | chr5_2:17795481-17795500 | Msa0760940:CDS | 35.0% |
| TAACTTATGTGCAAGCTGAA+CGG | - | chr5_2:17795591-17795610 | None:intergenic | 35.0% | |
| TAAGTCATACCTTTGTGGTA+AGG | - | chr5_2:17795633-17795652 | None:intergenic | 35.0% | |
| GAAGTTGAACAAATTGATGG+TGG | + | chr5_2:17795853-17795872 | Msa0760940:CDS | 35.0% | |
| !! | ACTTTGAGGCTTAACTTCAA+TGG | + | chr5_2:17795876-17795895 | Msa0760940:exon | 35.0% |
| GCTTAACTTCAATGGTTAAG+TGG | + | chr5_2:17795884-17795903 | Msa0760940:exon | 35.0% | |
| ! | TGGTTAAGTGGTGATCTTTT+TGG | + | chr5_2:17795896-17795915 | Msa0760940:three_prime_UTR | 35.0% |
| AACCTTTAGTTGTTCTTCTG+GGG | + | chr5_2:17795936-17795955 | Msa0760940:three_prime_UTR | 35.0% | |
| ! | TGATGTTTGTGTGTGTTTTG+GGG | - | chr5_2:17796161-17796180 | None:intergenic | 35.0% |
| ! | GTGATGTTTGTGTGTGTTTT+GGG | - | chr5_2:17796162-17796181 | None:intergenic | 35.0% |
| ATGGATGCTTCAGGTCAATT+AGG | + | chr5_2:17793000-17793019 | Msa0760940:CDS | 40.0% | |
| AGAATTCGTGATTCGAACTC+TGG | + | chr5_2:17793149-17793168 | Msa0760940:intron | 40.0% | |
| TTGTTCTCCTTTGGTTATGC+AGG | + | chr5_2:17793250-17793269 | Msa0760940:intron | 40.0% | |
| ATCTTCTCCTGCATAACCAA+AGG | - | chr5_2:17793260-17793279 | None:intergenic | 40.0% | |
| CAGGAGAAGATCCATTCAAT+GGG | + | chr5_2:17793269-17793288 | Msa0760940:intron | 40.0% | |
| TCAGCTGAAATCCCATTGAA+TGG | - | chr5_2:17793283-17793302 | None:intergenic | 40.0% | |
| AGCATAATTGACGCTCTTAG+AGG | + | chr5_2:17793349-17793368 | Msa0760940:CDS | 40.0% | |
| !! | TAATTGGGTTGATCAAAGGG+GGG | - | chr5_2:17793403-17793422 | None:intergenic | 40.0% |
| AAGTGAGTAACTCAGGCAAA+TGG | - | chr5_2:17793862-17793881 | None:intergenic | 40.0% | |
| ! | AACATGTGTCGGTAATGAAC+AGG | + | chr5_2:17794476-17794495 | Msa0760940:intron | 40.0% |
| CGGATAAGATGATTCTGATG+TGG | + | chr5_2:17795008-17795027 | Msa0760940:intron | 40.0% | |
| CAGATGATTCTAATGTGGTG+TGG | + | chr5_2:17795133-17795152 | Msa0760940:intron | 40.0% | |
| !! | TCTCAAGTAAGGGTGTTTGA+TGG | - | chr5_2:17795423-17795442 | None:intergenic | 40.0% |
| ATCAAACACCCTTACTTGAG+AGG | + | chr5_2:17795422-17795441 | Msa0760940:CDS | 40.0% | |
| !! | GTCTTTGTGACCGTTGATTT+AGG | + | chr5_2:17795470-17795489 | Msa0760940:CDS | 40.0% |
| TTGTGGTAAGGATGAAGATG+CGG | - | chr5_2:17795621-17795640 | None:intergenic | 40.0% | |
| CATCTTCATCCTTACCACAA+AGG | + | chr5_2:17795621-17795640 | Msa0760940:CDS | 40.0% | |
| TTCTTGTGCAGTGATGACTA+TGG | + | chr5_2:17795797-17795816 | Msa0760940:intron | 40.0% | |
| !! | CAAATTGATGGTGGACTTTG+AGG | + | chr5_2:17795862-17795881 | Msa0760940:CDS | 40.0% |
| ACCTTTAGTTGTTCTTCTGG+GGG | + | chr5_2:17795937-17795956 | Msa0760940:three_prime_UTR | 40.0% | |
| !! | GATGTTTGTGTGTGTTTTGG+GGG | - | chr5_2:17796160-17796179 | None:intergenic | 40.0% |
| ! | GGTGATGTTTGTGTGTGTTT+TGG | - | chr5_2:17796163-17796182 | None:intergenic | 40.0% |
| CAAACCAAAGGGCAAAGAGA+CGG | - | chr5_2:17792699-17792718 | None:intergenic | 45.0% | |
| ! | GTCTCTTTGCCCTTTGGTTT+GGG | + | chr5_2:17792698-17792717 | Msa0760940:five_prime_UTR | 45.0% |
| !! | TCTCTTTGCCCTTTGGTTTG+GGG | + | chr5_2:17792699-17792718 | Msa0760940:five_prime_UTR | 45.0% |
| ! | AAAGAGTGTGCAGGGTAGAT+AGG | - | chr5_2:17792769-17792788 | None:intergenic | 45.0% |
| ! | ACGCATTGAAAGAGTGTGCA+GGG | - | chr5_2:17792777-17792796 | None:intergenic | 45.0% |
| ! | AACGCATTGAAAGAGTGTGC+AGG | - | chr5_2:17792778-17792797 | None:intergenic | 45.0% |
| GTTTGTGTCATGGATGCTTC+AGG | + | chr5_2:17792991-17793010 | Msa0760940:CDS | 45.0% | |
| GCAGGAGAAGATCCATTCAA+TGG | + | chr5_2:17793268-17793287 | Msa0760940:intron | 45.0% | |
| ACACCATTTATTGGTGCACG+TGG | + | chr5_2:17793830-17793849 | Msa0760940:intron | 45.0% | |
| CTACCACGTGCACCAATAAA+TGG | - | chr5_2:17793836-17793855 | None:intergenic | 45.0% | |
| CATTTATTGGTGCACGTGGT+AGG | + | chr5_2:17793834-17793853 | Msa0760940:intron | 45.0% | |
| AACGAGCAAGTGAGTAACTC+AGG | - | chr5_2:17793869-17793888 | None:intergenic | 45.0% | |
| ! | AATACCCTTTTCGTACGCCA+AGG | + | chr5_2:17793928-17793947 | Msa0760940:intron | 45.0% |
| TTGCTTAGTTGTCATGGCCT+TGG | - | chr5_2:17793948-17793967 | None:intergenic | 45.0% | |
| ACAGGAATATATGGCTGACG+TGG | + | chr5_2:17794494-17794513 | Msa0760940:intron | 45.0% | |
| GAATAGAAGTCTTGGACGGT+AGG | - | chr5_2:17794736-17794755 | None:intergenic | 45.0% | |
| AACAGCGTTTGCCTTAGCAA+TGG | + | chr5_2:17795340-17795359 | Msa0760940:CDS | 45.0% | |
| TTTGCCTTAGCAATGGACAG+AGG | + | chr5_2:17795347-17795366 | Msa0760940:CDS | 45.0% | |
| TACTCCTCTGTCCATTGCTA+AGG | - | chr5_2:17795354-17795373 | None:intergenic | 45.0% | |
| TACTCACATCTGTGTCTACG+AGG | + | chr5_2:17795505-17795524 | Msa0760940:CDS | 45.0% | |
| TACGAGGATGTCTCATCGTA+CGG | + | chr5_2:17795521-17795540 | Msa0760940:CDS | 45.0% | |
| TCCCCCAGAAGAACAACTAA+AGG | - | chr5_2:17795941-17795960 | None:intergenic | 45.0% | |
| CTATCCGTCTCTTTGCCCTT+TGG | + | chr5_2:17792692-17792711 | Msa0760940:five_prime_UTR | 50.0% | |
| CGTCTCTTTGCCCTTTGGTT+TGG | + | chr5_2:17792697-17792716 | Msa0760940:five_prime_UTR | 50.0% | |
| !! | CTCTTTGCCCTTTGGTTTGG+GGG | + | chr5_2:17792700-17792719 | Msa0760940:five_prime_UTR | 50.0% |
| AGGGTAGATAGGTAGGAAGG+AGG | - | chr5_2:17792758-17792777 | None:intergenic | 50.0% | |
| TGCAGGGTAGATAGGTAGGA+AGG | - | chr5_2:17792761-17792780 | None:intergenic | 50.0% | |
| AGTGTGCAGGGTAGATAGGT+AGG | - | chr5_2:17792765-17792784 | None:intergenic | 50.0% | |
| GTGATTCGAACTCTGGTCAC+TGG | + | chr5_2:17793156-17793175 | Msa0760940:intron | 50.0% | |
| ! | ATGGCCTTGGCGTACGAAAA+GGG | - | chr5_2:17793935-17793954 | None:intergenic | 50.0% |
| CAGCAGCTCCTCTCAAGTAA+GGG | - | chr5_2:17795433-17795452 | None:intergenic | 50.0% | |
| TCAGCAGCTCCTCTCAAGTA+AGG | - | chr5_2:17795434-17795453 | None:intergenic | 50.0% | |
| AGGAGCTGCTGAAATGTACG+AGG | + | chr5_2:17795442-17795461 | Msa0760940:CDS | 50.0% | |
| GCTGCTGAAATGTACGAGGA+TGG | + | chr5_2:17795446-17795465 | Msa0760940:CDS | 50.0% | |
| GGTAAGGATGAAGATGCGGT+AGG | - | chr5_2:17795617-17795636 | None:intergenic | 50.0% | |
| GACGCTCTTAGAGGTTGCTC+TGG | + | chr5_2:17793358-17793377 | Msa0760940:CDS | 55.0% | |
| ! | CATGGCCTTGGCGTACGAAA+AGG | - | chr5_2:17793936-17793955 | None:intergenic | 55.0% |
| CCTCCAAACCACAGCAGTTG+CGG | - | chr5_2:17794595-17794614 | None:intergenic | 55.0% | |
| ! | CGCAACTGCTGTGGTTTGGA+GGG | + | chr5_2:17794593-17794612 | Msa0760940:CDS | 55.0% |
| CTGATGTGGCTGATCGCATG+CGG | + | chr5_2:17794956-17794975 | Msa0760940:intron | 55.0% | |
| GTGGTGTGGTTGACTGCATG+CGG | + | chr5_2:17795147-17795166 | Msa0760940:intron | 55.0% | |
| GCGCACACCCCCAAACCAAA+GGG | - | chr5_2:17792710-17792729 | None:intergenic | 60.0% | |
| CACATCCTCCGCAACTGCTG+TGG | + | chr5_2:17794584-17794603 | Msa0760940:CDS | 60.0% | |
| CCAAACCACAGCAGTTGCGG+AGG | - | chr5_2:17794592-17794611 | None:intergenic | 60.0% | |
| CCTCCGCAACTGCTGTGGTT+TGG | + | chr5_2:17794589-17794608 | Msa0760940:CDS | 60.0% | |
| ! | CCGCAACTGCTGTGGTTTGG+AGG | + | chr5_2:17794592-17794611 | Msa0760940:CDS | 60.0% |
| CGCGCACACCCCCAAACCAA+AGG | - | chr5_2:17792711-17792730 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17792640 | 17796248 | 17792640 | ID=Msa0760940;Name=Msa0760940 |
| chr5_2 | mRNA | 17792640 | 17796248 | 17792640 | ID=Msa0760940-mRNA-1;Parent=Msa0760940;Name=Msa0760940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=318|1|1|1|1|1|5|359|298 |
| chr5_2 | exon | 17792640 | 17793087 | 17792640 | ID=Msa0760940-mRNA-1:exon:7799;Parent=Msa0760940-mRNA-1 |
| chr5_2 | exon | 17793272 | 17793426 | 17793272 | ID=Msa0760940-mRNA-1:exon:7800;Parent=Msa0760940-mRNA-1 |
| chr5_2 | exon | 17794498 | 17794689 | 17794498 | ID=Msa0760940-mRNA-1:exon:7801;Parent=Msa0760940-mRNA-1 |
| chr5_2 | exon | 17795305 | 17795642 | 17795305 | ID=Msa0760940-mRNA-1:exon:7802;Parent=Msa0760940-mRNA-1 |
| chr5_2 | exon | 17795808 | 17796248 | 17795808 | ID=Msa0760940-mRNA-1:exon:7803;Parent=Msa0760940-mRNA-1 |
| chr5_2 | five_prime_UTR | 17792640 | 17792957 | 17792640 | ID=Msa0760940-mRNA-1:five_prime_utr;Parent=Msa0760940-mRNA-1 |
| chr5_2 | CDS | 17792958 | 17793087 | 17792958 | ID=Msa0760940-mRNA-1:cds;Parent=Msa0760940-mRNA-1 |
| chr5_2 | CDS | 17793272 | 17793426 | 17793272 | ID=Msa0760940-mRNA-1:cds;Parent=Msa0760940-mRNA-1 |
| chr5_2 | CDS | 17794498 | 17794689 | 17794498 | ID=Msa0760940-mRNA-1:cds;Parent=Msa0760940-mRNA-1 |
| chr5_2 | CDS | 17795305 | 17795642 | 17795305 | ID=Msa0760940-mRNA-1:cds;Parent=Msa0760940-mRNA-1 |
| chr5_2 | CDS | 17795808 | 17795889 | 17795808 | ID=Msa0760940-mRNA-1:cds;Parent=Msa0760940-mRNA-1 |
| chr5_2 | three_prime_UTR | 17795890 | 17796248 | 17795890 | ID=Msa0760940-mRNA-1:three_prime_utr;Parent=Msa0760940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
