Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720370 | XP_003612872.1 | 98.658 | 298 | 4 | 0 | 1 | 298 | 1 | 298 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720370 | sp|Q0JKZ0|SNL6_ORYSJ | 33.227 | 313 | 170 | 10 | 10 | 293 | 60 | 362 | 1.39e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720370 | G7KDR3 | 98.658 | 298 | 4 | 0 | 1 | 298 | 1 | 298 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0720370 | 0.820988 | 5.128116e-53 | -8.615850e-47 |
| Msa0021090 | Msa0720370 | -0.803418 | 3.519911e-49 | -8.615850e-47 |
| Msa0026660 | Msa0720370 | 0.829987 | 3.783248e-55 | -8.615850e-47 |
| Msa0036370 | Msa0720370 | 0.815835 | 7.539668e-52 | -8.615850e-47 |
| Msa0052350 | Msa0720370 | -0.803171 | 3.959568e-49 | -8.615850e-47 |
| Msa0072170 | Msa0720370 | 0.815674 | 8.190085e-52 | -8.615850e-47 |
| Msa0077540 | Msa0720370 | 0.819431 | 1.165525e-52 | -8.615850e-47 |
| Msa0090030 | Msa0720370 | 0.817388 | 3.383526e-52 | -8.615850e-47 |
| Msa0100800 | Msa0720370 | 0.850408 | 1.731023e-60 | -8.615850e-47 |
| Msa0112300 | Msa0720370 | -0.800088 | 1.698337e-48 | -8.615850e-47 |
| Msa0120540 | Msa0720370 | 0.818635 | 1.768317e-52 | -8.615850e-47 |
| Msa0603670 | Msa0720370 | 0.803166 | 3.969641e-49 | -8.615850e-47 |
| Msa0625790 | Msa0720370 | 0.801096 | 1.057937e-48 | -8.615850e-47 |
| Msa0626850 | Msa0720370 | 0.801278 | 9.710176e-49 | -8.615850e-47 |
| Msa0646130 | Msa0720370 | 0.816153 | 6.404713e-52 | -8.615850e-47 |
| Msa0661710 | Msa0720370 | 0.818773 | 1.645345e-52 | -8.615850e-47 |
| Msa0668460 | Msa0720370 | -0.801940 | 7.103901e-49 | -8.615850e-47 |
| Msa0679810 | Msa0720370 | 0.805557 | 1.260499e-49 | -8.615850e-47 |
| Msa0706390 | Msa0720370 | 0.800464 | 1.423995e-48 | -8.615850e-47 |
| Msa0707390 | Msa0720370 | 0.817386 | 3.387947e-52 | -8.615850e-47 |
| Msa0720370 | Msa0736570 | 0.803057 | 4.179219e-49 | -8.615850e-47 |
| Msa0720370 | Msa0760940 | 0.861411 | 1.045481e-63 | -8.615850e-47 |
| Msa0720370 | Msa0792090 | 0.804711 | 1.894526e-49 | -8.615850e-47 |
| Msa0720370 | Msa0794050 | 0.819036 | 1.434099e-52 | -8.615850e-47 |
| Msa0720370 | Msa0818770 | 0.802003 | 6.895340e-49 | -8.615850e-47 |
| Msa0720370 | Msa0943270 | 0.814453 | 1.528768e-51 | -8.615850e-47 |
| Msa0720370 | Msa0945100 | 0.805687 | 1.183472e-49 | -8.615850e-47 |
| Msa0720370 | Msa0947530 | -0.808003 | 3.833121e-50 | -8.615850e-47 |
| Msa0720370 | Msa1036910 | 0.816135 | 6.465174e-52 | -8.615850e-47 |
| Msa0720370 | Msa1073400 | 0.815565 | 8.660709e-52 | -8.615850e-47 |
| Msa0720370 | Msa1073830 | 0.817055 | 4.020652e-52 | -8.615850e-47 |
| Msa0720370 | Msa1089740 | -0.807039 | 6.141705e-50 | -8.615850e-47 |
| Msa0720370 | Msa1113880 | 0.816636 | 4.991946e-52 | -8.615850e-47 |
| Msa0720370 | Msa1114040 | 0.804385 | 2.216119e-49 | -8.615850e-47 |
| Msa0720370 | Msa1125790 | -0.802563 | 5.288143e-49 | -8.615850e-47 |
| Msa0720370 | Msa1172130 | -0.820541 | 6.494071e-53 | -8.615850e-47 |
| Msa0720370 | Msa1178370 | 0.803159 | 3.982204e-49 | -8.615850e-47 |
| Msa0720370 | Msa1182640 | 0.811368 | 7.249886e-51 | -8.615850e-47 |
| Msa0720370 | Msa1207730 | 0.801517 | 8.672812e-49 | -8.615850e-47 |
| Msa0720370 | Msa1233950 | 0.800350 | 1.501897e-48 | -8.615850e-47 |
| Msa0720370 | Msa1253810 | 0.816044 | 6.773148e-52 | -8.615850e-47 |
| Msa0720370 | Msa1294960 | 0.803192 | 3.920670e-49 | -8.615850e-47 |
| Msa0720370 | Msa1296300 | 0.816723 | 4.774985e-52 | -8.615850e-47 |
| Msa0720370 | Msa1330890 | -0.804406 | 2.193850e-49 | -8.615850e-47 |
| Msa0720370 | Msa1340830 | 0.808036 | 3.773262e-50 | -8.615850e-47 |
| Msa0720370 | Msa1350690 | 0.810615 | 1.055545e-50 | -8.615850e-47 |
| Msa0720370 | Msa1363700 | 0.809415 | 1.914106e-50 | -8.615850e-47 |
| Msa0720370 | Msa1364060 | 0.819955 | 8.851423e-53 | -8.615850e-47 |
| Msa0720370 | Msa1383350 | 0.812861 | 3.425548e-51 | -8.615850e-47 |
| Msa0720370 | Msa1385350 | 0.802540 | 5.345860e-49 | -8.615850e-47 |
| Msa0720370 | Msa1418960 | -0.814039 | 1.886794e-51 | -8.615850e-47 |
| Msa0720370 | Msa1422840 | 0.810604 | 1.061306e-50 | -8.615850e-47 |
| Msa0720370 | Msa1426920 | 0.803783 | 2.956427e-49 | -8.615850e-47 |
| Msa0126880 | Msa0720370 | 0.815823 | 7.588588e-52 | -8.615850e-47 |
| Msa0131450 | Msa0720370 | 0.821047 | 4.970353e-53 | -8.615850e-47 |
| Msa0140520 | Msa0720370 | -0.802552 | 5.313501e-49 | -8.615850e-47 |
| Msa0166750 | Msa0720370 | 0.803606 | 3.217316e-49 | -8.615850e-47 |
| Msa0173330 | Msa0720370 | 0.805246 | 1.464298e-49 | -8.615850e-47 |
| Msa0175290 | Msa0720370 | -0.804932 | 1.703950e-49 | -8.615850e-47 |
| Msa0186310 | Msa0720370 | 0.836181 | 1.087740e-56 | -8.615850e-47 |
| Msa0194720 | Msa0720370 | 0.803834 | 2.885185e-49 | -8.615850e-47 |
| Msa0197530 | Msa0720370 | 0.812780 | 3.568097e-51 | -8.615850e-47 |
| Msa0198940 | Msa0720370 | 0.810276 | 1.249180e-50 | -8.615850e-47 |
| Msa0208810 | Msa0720370 | 0.802035 | 6.791316e-49 | -8.615850e-47 |
| Msa0220080 | Msa0720370 | 0.809285 | 2.041010e-50 | -8.615850e-47 |
| Msa0223920 | Msa0720370 | 0.827741 | 1.323485e-54 | -8.615850e-47 |
| Msa0227310 | Msa0720370 | -0.822371 | 2.455082e-53 | -8.615850e-47 |
| Msa0229360 | Msa0720370 | 0.832319 | 1.011797e-55 | -8.615850e-47 |
| Msa0370160 | Msa0720370 | -0.807568 | 4.744329e-50 | -8.615850e-47 |
| Msa0387370 | Msa0720370 | 0.801205 | 1.004884e-48 | -8.615850e-47 |
| Msa0387880 | Msa0720370 | -0.810509 | 1.112934e-50 | -8.615850e-47 |
| Msa0436190 | Msa0720370 | 0.817489 | 3.211272e-52 | -8.615850e-47 |
| Msa0436200 | Msa0720370 | 0.806918 | 6.512281e-50 | -8.615850e-47 |
| Msa0439890 | Msa0720370 | 0.824541 | 7.633713e-54 | -8.615850e-47 |
| Msa0465960 | Msa0720370 | 0.807128 | 5.878666e-50 | -8.615850e-47 |
| Msa0239060 | Msa0720370 | 0.813682 | 2.262561e-51 | -8.615850e-47 |
| Msa0241740 | Msa0720370 | 0.818899 | 1.540447e-52 | -8.615850e-47 |
| Msa0252240 | Msa0720370 | 0.811139 | 8.129337e-51 | -8.615850e-47 |
| Msa0265160 | Msa0720370 | 0.853512 | 2.275657e-61 | -8.615850e-47 |
| Msa0266210 | Msa0720370 | 0.813270 | 2.787154e-51 | -8.615850e-47 |
| Msa0287670 | Msa0720370 | 0.811934 | 5.461411e-51 | -8.615850e-47 |
| Msa0303160 | Msa0720370 | 0.802124 | 6.509776e-49 | -8.615850e-47 |
| Msa0327140 | Msa0720370 | -0.805927 | 1.053745e-49 | -8.615850e-47 |
| Msa0335320 | Msa0720370 | -0.802785 | 4.758133e-49 | -8.615850e-47 |
| Msa0524600 | Msa0720370 | 0.812153 | 4.893112e-51 | -8.615850e-47 |
| Msa0533960 | Msa0720370 | -0.809760 | 1.613241e-50 | -8.615850e-47 |
| Msa0534080 | Msa0720370 | 0.803759 | 2.990958e-49 | -8.615850e-47 |
| Msa0534410 | Msa0720370 | 0.808026 | 3.790537e-50 | -8.615850e-47 |
| Msa0545290 | Msa0720370 | 0.803755 | 2.996781e-49 | -8.615850e-47 |
| Msa0550570 | Msa0720370 | 0.801948 | 7.077702e-49 | -8.615850e-47 |
| Msa0578090 | Msa0720370 | 0.809156 | 2.174899e-50 | -8.615850e-47 |
| Msa0582280 | Msa0720370 | 0.814386 | 1.582109e-51 | -8.615850e-47 |
| Msa0590650 | Msa0720370 | 0.809961 | 1.460268e-50 | -8.615850e-47 |
| Msa0600890 | Msa0720370 | 0.805994 | 1.020267e-49 | -8.615850e-47 |
| Msa0602370 | Msa0720370 | 0.815886 | 7.344706e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720370 | MtrunA17_Chr5g0411071 | 98.658 | 298 | 4 | 0 | 1 | 298 | 1 | 298 | 0.0 | 620 |
| Msa0720370 | MtrunA17_Chr6g0450211 | 31.373 | 306 | 186 | 8 | 6 | 293 | 49 | 348 | 1.83e-49 | 167 |
| Msa0720370 | MtrunA17_Chr2g0333781 | 31.475 | 305 | 190 | 9 | 4 | 296 | 12 | 309 | 5.99e-38 | 137 |
| Msa0720370 | MtrunA17_Chr3g0077231 | 28.990 | 307 | 194 | 9 | 7 | 296 | 1 | 300 | 2.66e-36 | 132 |
| Msa0720370 | MtrunA17_Chr5g0431311 | 30.392 | 306 | 187 | 8 | 9 | 296 | 2 | 299 | 1.03e-35 | 130 |
| Msa0720370 | MtrunA17_Chr4g0002661 | 31.169 | 308 | 172 | 10 | 12 | 296 | 13 | 303 | 8.17e-35 | 128 |
| Msa0720370 | MtrunA17_Chr3g0077221 | 27.723 | 303 | 197 | 7 | 10 | 296 | 8 | 304 | 1.15e-34 | 128 |
| Msa0720370 | MtrunA17_Chr4g0001321 | 31.410 | 312 | 189 | 10 | 3 | 296 | 2 | 306 | 7.78e-34 | 126 |
| Msa0720370 | MtrunA17_Chr8g0364051 | 31.046 | 306 | 180 | 10 | 11 | 296 | 7 | 301 | 3.80e-33 | 124 |
| Msa0720370 | MtrunA17_Chr8g0363831 | 28.763 | 299 | 194 | 6 | 12 | 296 | 9 | 302 | 2.60e-32 | 122 |
| Msa0720370 | MtrunA17_Chr2g0331211 | 30.451 | 266 | 169 | 5 | 10 | 260 | 3 | 267 | 3.21e-32 | 121 |
| Msa0720370 | MtrunA17_Chr3g0106111 | 28.990 | 307 | 190 | 9 | 9 | 296 | 2 | 299 | 3.40e-32 | 121 |
| Msa0720370 | MtrunA17_Chr1g0155431 | 29.747 | 316 | 180 | 11 | 9 | 297 | 5 | 305 | 7.93e-32 | 120 |
| Msa0720370 | MtrunA17_Chr1g0155411 | 30.216 | 278 | 161 | 10 | 9 | 263 | 5 | 272 | 3.62e-31 | 119 |
| Msa0720370 | MtrunA17_Chr4g0039321 | 27.687 | 307 | 188 | 10 | 12 | 296 | 9 | 303 | 1.44e-29 | 114 |
| Msa0720370 | MtrunA17_Chr4g0039311 | 27.152 | 302 | 196 | 8 | 12 | 296 | 11 | 305 | 1.67e-29 | 114 |
| Msa0720370 | MtrunA17_Chr5g0423551 | 26.829 | 246 | 162 | 6 | 13 | 243 | 5 | 247 | 1.78e-29 | 114 |
| Msa0720370 | MtrunA17_Chr4g0002961 | 30.769 | 260 | 153 | 6 | 12 | 252 | 13 | 264 | 6.66e-27 | 107 |
| Msa0720370 | MtrunA17_Chr7g0245741 | 28.253 | 269 | 167 | 7 | 12 | 260 | 8 | 270 | 8.96e-27 | 107 |
| Msa0720370 | MtrunA17_Chr7g0245731 | 28.253 | 269 | 167 | 6 | 12 | 260 | 58 | 320 | 1.74e-26 | 107 |
| Msa0720370 | MtrunA17_Chr7g0245691 | 28.315 | 279 | 163 | 10 | 12 | 263 | 8 | 276 | 1.32e-24 | 101 |
| Msa0720370 | MtrunA17_Chr7g0245671 | 28.897 | 263 | 160 | 9 | 12 | 252 | 8 | 265 | 1.52e-24 | 100 |
| Msa0720370 | MtrunA17_Chr7g0245641 | 30.846 | 201 | 126 | 6 | 12 | 202 | 45 | 242 | 5.79e-24 | 100 |
| Msa0720370 | MtrunA17_Chr7g0245631 | 27.820 | 266 | 172 | 5 | 12 | 260 | 8 | 270 | 1.44e-23 | 98.2 |
| Msa0720370 | MtrunA17_Chr4g0042101 | 27.796 | 313 | 184 | 13 | 13 | 292 | 25 | 328 | 4.81e-23 | 97.4 |
| Msa0720370 | MtrunA17_Chr2g0291541 | 29.572 | 257 | 153 | 9 | 12 | 247 | 10 | 259 | 5.00e-23 | 97.1 |
| Msa0720370 | MtrunA17_Chr4g0010991 | 31.461 | 178 | 107 | 5 | 11 | 177 | 7 | 180 | 9.81e-20 | 87.8 |
| Msa0720370 | MtrunA17_Chr7g0245711 | 26.667 | 225 | 150 | 4 | 48 | 260 | 11 | 232 | 1.52e-18 | 84.0 |
| Msa0720370 | MtrunA17_Chr2g0282001 | 22.826 | 276 | 178 | 7 | 12 | 254 | 7 | 280 | 1.39e-14 | 73.2 |
| Msa0720370 | MtrunA17_Chr2g0281991 | 25.294 | 170 | 117 | 5 | 12 | 171 | 8 | 177 | 1.80e-11 | 63.9 |
| Msa0720370 | MtrunA17_Chr7g0275521 | 25.676 | 148 | 104 | 3 | 12 | 153 | 7 | 154 | 2.62e-11 | 63.5 |
| Msa0720370 | MtrunA17_Chr2g0282011 | 24.118 | 170 | 119 | 4 | 12 | 171 | 8 | 177 | 5.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720370 | AT2G23910.1 | 44.816 | 299 | 146 | 7 | 8 | 293 | 6 | 298 | 6.72e-87 | 262 |
| Msa0720370 | AT4G30470.1 | 43.667 | 300 | 151 | 6 | 6 | 293 | 4 | 297 | 3.03e-84 | 256 |
| Msa0720370 | AT2G23910.2 | 46.617 | 266 | 128 | 5 | 8 | 263 | 6 | 267 | 9.20e-83 | 251 |
| Msa0720370 | AT2G23910.3 | 46.617 | 266 | 128 | 5 | 8 | 263 | 6 | 267 | 1.00e-82 | 251 |
| Msa0720370 | AT2G23910.4 | 44.574 | 258 | 128 | 6 | 45 | 293 | 13 | 264 | 1.71e-73 | 227 |
| Msa0720370 | AT5G14700.1 | 30.323 | 310 | 193 | 8 | 6 | 293 | 49 | 357 | 1.44e-40 | 145 |
| Msa0720370 | AT5G58490.1 | 30.592 | 304 | 185 | 7 | 11 | 296 | 8 | 303 | 2.61e-37 | 135 |
| Msa0720370 | AT1G51410.1 | 31.353 | 303 | 184 | 8 | 11 | 296 | 8 | 303 | 3.23e-37 | 135 |
| Msa0720370 | AT2G02400.1 | 31.104 | 299 | 176 | 10 | 7 | 281 | 1 | 293 | 3.25e-35 | 129 |
| Msa0720370 | AT1G09510.1 | 31.783 | 258 | 154 | 7 | 12 | 252 | 8 | 260 | 2.63e-34 | 127 |
| Msa0720370 | AT5G19440.1 | 29.801 | 302 | 188 | 8 | 12 | 296 | 10 | 304 | 2.80e-34 | 127 |
| Msa0720370 | AT4G35420.1 | 27.687 | 307 | 191 | 7 | 5 | 297 | 1 | 290 | 1.45e-33 | 125 |
| Msa0720370 | AT1G15950.3 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 6.64e-32 | 121 |
| Msa0720370 | AT1G15950.1 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 6.64e-32 | 121 |
| Msa0720370 | AT1G09480.2 | 28.525 | 305 | 188 | 8 | 12 | 296 | 8 | 302 | 7.01e-32 | 120 |
| Msa0720370 | AT1G15950.2 | 30.201 | 298 | 189 | 8 | 11 | 296 | 12 | 302 | 7.04e-32 | 121 |
| Msa0720370 | AT1G80820.1 | 30.592 | 304 | 180 | 9 | 12 | 297 | 8 | 298 | 7.57e-32 | 121 |
| Msa0720370 | AT1G09480.1 | 28.525 | 305 | 188 | 8 | 12 | 296 | 55 | 349 | 1.53e-31 | 121 |
| Msa0720370 | AT1G15950.4 | 31.615 | 291 | 177 | 10 | 11 | 289 | 12 | 292 | 4.96e-31 | 118 |
| Msa0720370 | AT1G80820.2 | 33.735 | 249 | 135 | 8 | 12 | 242 | 8 | 244 | 1.01e-30 | 116 |
| Msa0720370 | AT2G33600.1 | 30.619 | 307 | 178 | 8 | 7 | 292 | 4 | 296 | 2.22e-30 | 117 |
| Msa0720370 | AT1G15950.6 | 31.698 | 265 | 162 | 8 | 11 | 263 | 12 | 269 | 2.54e-30 | 115 |
| Msa0720370 | AT1G15950.5 | 31.698 | 265 | 162 | 8 | 11 | 263 | 12 | 269 | 2.92e-30 | 115 |
| Msa0720370 | AT2G33590.1 | 29.450 | 309 | 181 | 9 | 6 | 292 | 3 | 296 | 3.22e-30 | 116 |
| Msa0720370 | AT1G09490.1 | 29.085 | 306 | 189 | 9 | 10 | 296 | 6 | 302 | 1.27e-29 | 115 |
| Msa0720370 | AT1G66800.1 | 30.483 | 269 | 160 | 7 | 12 | 263 | 8 | 266 | 1.44e-28 | 112 |
| Msa0720370 | AT1G68540.1 | 27.236 | 246 | 161 | 6 | 14 | 243 | 6 | 249 | 1.88e-27 | 109 |
| Msa0720370 | AT5G42800.1 | 31.538 | 260 | 146 | 9 | 10 | 246 | 6 | 256 | 2.40e-27 | 110 |
| Msa0720370 | AT4G27250.2 | 25.723 | 311 | 201 | 9 | 11 | 297 | 12 | 316 | 4.35e-25 | 103 |
| Msa0720370 | AT1G25460.1 | 27.132 | 258 | 164 | 9 | 25 | 263 | 17 | 269 | 5.32e-25 | 102 |
| Msa0720370 | AT4G27250.1 | 32.105 | 190 | 116 | 5 | 11 | 187 | 12 | 201 | 1.00e-24 | 102 |
| Msa0720370 | AT1G09500.3 | 28.016 | 257 | 166 | 5 | 12 | 252 | 8 | 261 | 4.52e-24 | 99.0 |
| Msa0720370 | AT1G09500.1 | 28.016 | 257 | 166 | 5 | 12 | 252 | 8 | 261 | 1.14e-23 | 99.0 |
| Msa0720370 | AT5G14700.2 | 29.493 | 217 | 137 | 5 | 6 | 206 | 49 | 265 | 1.72e-23 | 97.8 |
| Msa0720370 | AT1G09490.2 | 30.088 | 226 | 135 | 7 | 56 | 266 | 25 | 242 | 4.40e-22 | 94.0 |
| Msa0720370 | AT1G61720.1 | 27.099 | 262 | 159 | 7 | 9 | 243 | 10 | 266 | 9.30e-22 | 94.0 |
| Msa0720370 | AT1G76470.1 | 27.362 | 307 | 194 | 10 | 10 | 296 | 5 | 302 | 3.43e-20 | 89.4 |
| Msa0720370 | AT2G45400.1 | 25.749 | 334 | 189 | 11 | 3 | 297 | 31 | 344 | 2.35e-18 | 84.7 |
| Msa0720370 | AT2G45400.2 | 26.545 | 275 | 157 | 7 | 2 | 243 | 30 | 292 | 8.45e-18 | 82.4 |
| Msa0720370 | AT1G68540.2 | 27.632 | 152 | 100 | 3 | 110 | 252 | 1 | 151 | 1.17e-17 | 80.1 |
| Msa0720370 | AT2G45400.4 | 28.505 | 214 | 137 | 4 | 3 | 202 | 31 | 242 | 2.05e-17 | 80.5 |
| Msa0720370 | AT1G09500.2 | 27.273 | 209 | 137 | 4 | 56 | 252 | 22 | 227 | 5.85e-16 | 77.0 |
| Msa0720370 | AT1G15950.7 | 28.986 | 207 | 136 | 5 | 98 | 296 | 1 | 204 | 3.50e-15 | 73.9 |
Find 89 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCTTTGCCCTTTGGTTT+GGG | 0.107808 | 5_1:+16321340 | Msa0720370:five_prime_UTR |
| TGTCTCTTTGCCCTTTGGTT+TGG | 0.263407 | 5_1:+16321339 | Msa0720370:five_prime_UTR |
| GGTGATGTTTGTGTGTGTTT+TGG | 0.264785 | 5_1:-16324869 | None:intergenic |
| CTATCTGTCTCTTTGCCCTT+TGG | 0.293016 | 5_1:+16321334 | Msa0720370:five_prime_UTR |
| AAAGAGTGTGCAGGGTAGAT+AGG | 0.314810 | 5_1:-16321408 | None:intergenic |
| AACAAACACACAAACGAATA+TGG | 0.318061 | 5_1:+16321586 | Msa0720370:exon |
| CAAGAAGTTGAACAAATTAA+TGG | 0.319570 | 5_1:+16324561 | Msa0720370:CDS |
| GTCTTTGTGACCGTTGATTT+AGG | 0.322077 | 5_1:+16324178 | Msa0720370:CDS |
| GGTAGTTGTAGTTTGATAGA+TGG | 0.325492 | 5_1:-16321376 | None:intergenic |
| AACCTTTAGTTGTTCTTATG+AGG | 0.329614 | 5_1:+16324647 | Msa0720370:three_prime_UTR |
| TAGATTATATAAAGAAGGTT+AGG | 0.335064 | 5_1:-16321451 | None:intergenic |
| AGCATAATTGATGCTCTTAG+AGG | 0.347208 | 5_1:+16321989 | Msa0720370:CDS |
| CATGCATCCATTCAACAATA+TGG | 0.361898 | 5_1:+16321713 | Msa0720370:CDS |
| TAAGACCATAGAACCTGATT+TGG | 0.363147 | 5_1:+16323289 | Msa0720370:CDS |
| AATGGACAGAGGAGTGAATA+TGG | 0.373451 | 5_1:+16324066 | Msa0720370:CDS |
| TTCATCCAAATCAGGTTCTA+TGG | 0.374831 | 5_1:-16323294 | None:intergenic |
| CAATGTATTTCATCCAAATC+AGG | 0.379342 | 5_1:-16323302 | None:intergenic |
| CGGTAATGAACAGGAATATA+TGG | 0.382600 | 5_1:+16323151 | Msa0720370:intron |
| CAAATTAATGGTGGACTTTG+AGG | 0.389339 | 5_1:+16324573 | Msa0720370:CDS |
| GTTTGTGTCATGGATGCTTC+AGG | 0.401929 | 5_1:+16321638 | Msa0720370:CDS |
| CCTCCGCAACTGCTGTGGTT+TGG | 0.409242 | 5_1:+16323255 | Msa0720370:CDS |
| AGATTATATAAAGAAGGTTA+GGG | 0.412002 | 5_1:-16321450 | None:intergenic |
| AGAGTTAGATTATATAAAGA+AGG | 0.419790 | 5_1:-16321456 | None:intergenic |
| ATGGATGCTTCAGGTCAATT+AGG | 0.424212 | 5_1:+16321647 | Msa0720370:CDS |
| CTCTTTGCCCTTTGGTTTGG+GGG | 0.429508 | 5_1:+16321342 | Msa0720370:five_prime_UTR |
| CCGCAACTGCTGTGGTTTGG+AGG | 0.433210 | 5_1:+16323258 | Msa0720370:CDS |
| TCAGCAGCTCCTCTCAAGTA+AGG | 0.433540 | 5_1:-16324139 | None:intergenic |
| GATGCTCTTAGAGGTTGCTC+TGG | 0.436699 | 5_1:+16321998 | Msa0720370:CDS |
| ATTATGCTATGATAATCAAA+AGG | 0.437929 | 5_1:-16321974 | None:intergenic |
| TCATAATTGGGCTGGTCAAA+GGG | 0.439042 | 5_1:-16322043 | None:intergenic |
| CACAAATACAATTTAGATGC+AGG | 0.440884 | 5_1:-16324890 | None:intergenic |
| ATCATAATTGGGCTGGTCAA+AGG | 0.444436 | 5_1:-16322044 | None:intergenic |
| TGCTTACATCATAATTGGGC+TGG | 0.462300 | 5_1:-16322051 | None:intergenic |
| ACTTTGAGGCTTAACTTCAA+TGG | 0.467815 | 5_1:+16324587 | Msa0720370:exon |
| CAATTTCTGTCGCAAATTCA+AGG | 0.478165 | 5_1:+16323334 | Msa0720370:CDS |
| ATGTTGTGCAGTGATGACTA+TGG | 0.478181 | 5_1:+16324508 | Msa0720370:intron |
| AGTGTGCAGGGTAGATAGGT+AGG | 0.487903 | 5_1:-16321404 | None:intergenic |
| GCAGGAGAAGATCCATTCAA+TGG | 0.492642 | 5_1:+16321908 | Msa0720370:intron |
| TCAGCTGAAATCCCATTGAA+TGG | 0.493043 | 5_1:-16321920 | None:intergenic |
| TCCCTCATAAGAACAACTAA+AGG | 0.494708 | 5_1:-16324649 | None:intergenic |
| CGCAACTGCTGTGGTTTGGA+GGG | 0.495829 | 5_1:+16323259 | Msa0720370:CDS |
| ATAATTCAGTCATACCTTTG+TGG | 0.497881 | 5_1:-16324343 | None:intergenic |
| TGCAGGGTAGATAGGTAGGA+AGG | 0.505127 | 5_1:-16321400 | None:intergenic |
| TCAGTCATACCTTTGTGGTA+AGG | 0.505180 | 5_1:-16324338 | None:intergenic |
| TCTCTTTGCCCTTTGGTTTG+GGG | 0.505561 | 5_1:+16321341 | Msa0720370:five_prime_UTR |
| GCTTAACTTCAATGGTTAAG+TGG | 0.507680 | 5_1:+16324595 | Msa0720370:exon |
| ACCTTTAGTTGTTCTTATGA+GGG | 0.510947 | 5_1:+16324648 | Msa0720370:three_prime_UTR |
| GTTCAAAGACTTCTTCAAAG+AGG | 0.514233 | 5_1:+16321680 | Msa0720370:CDS |
| CACATCCTCCGCAACTGCTG+TGG | 0.524456 | 5_1:+16323250 | Msa0720370:CDS |
| CACTCCTCTGTCCATTGCTA+AGG | 0.525382 | 5_1:-16324059 | None:intergenic |
| CCTCCAAACCACAGCAGTTG+CGG | 0.528661 | 5_1:-16323258 | None:intergenic |
| CAGGAGAAGATCCATTCAAT+GGG | 0.530786 | 5_1:+16321909 | Msa0720370:intron |
| TTATGCTATGATAATCAAAA+GGG | 0.531153 | 5_1:-16321973 | None:intergenic |
| TGTTGTAAGAAAGAAAAGAA+AGG | 0.537679 | 5_1:-16321481 | None:intergenic |
| AATATGGTATCAATCAATGC+TGG | 0.538235 | 5_1:+16324082 | Msa0720370:CDS |
| TGACTAGTTATGTCAAAAGA+AGG | 0.541260 | 5_1:-16321611 | None:intergenic |
| AATTTGTTGTATATAACATG+TGG | 0.541455 | 5_1:-16324715 | None:intergenic |
| CAATATTCTATCTGTATACG+TGG | 0.541743 | 5_1:+16321257 | Msa0720370:five_prime_UTR |
| TTTCTCATAATCTTTCAACT+AGG | 0.542186 | 5_1:+16321563 | Msa0720370:five_prime_UTR |
| AACGCATTGAAAGAGTGTGC+AGG | 0.545190 | 5_1:-16321417 | None:intergenic |
| ATATGTACCATATTGTTGAA+TGG | 0.548967 | 5_1:-16321720 | None:intergenic |
| CTGATTTGGATGAAATACAT+TGG | 0.555033 | 5_1:+16323303 | Msa0720370:CDS |
| ATTTGTTGTATATAACATGT+GGG | 0.566143 | 5_1:-16324714 | None:intergenic |
| ACAAACAAACAGTTATGGCA+TGG | 0.567066 | 5_1:+16324001 | Msa0720370:intron |
| TACGAGGATGTCTCATCGTA+CGG | 0.580649 | 5_1:+16324229 | Msa0720370:CDS |
| AACAGCGTTTGCCTTAGCAA+TGG | 0.587609 | 5_1:+16324048 | Msa0720370:CDS |
| ATCAAACACCCTTACTTGAG+AGG | 0.597030 | 5_1:+16324130 | Msa0720370:CDS |
| CAGCAGCTCCTCTCAAGTAA+GGG | 0.598914 | 5_1:-16324138 | None:intergenic |
| GTCAAAAGTAAAAGTAACAA+CGG | 0.600705 | 5_1:-16324820 | None:intergenic |
| TTTGAAGAAGTCTTTGAACA+AGG | 0.606201 | 5_1:-16321676 | None:intergenic |
| CAAACAAACAGTTATGGCAT+GGG | 0.606327 | 5_1:+16324002 | Msa0720370:intron |
| TAGTCATACTGTTTGTGTCA+TGG | 0.607789 | 5_1:+16321628 | Msa0720370:CDS |
| GAAGTTGAACAAATTAATGG+TGG | 0.616912 | 5_1:+16324564 | Msa0720370:CDS |
| TAACTTATGTGCAAGCTGAA+CGG | 0.619871 | 5_1:-16324296 | None:intergenic |
| AGGGTAGATAGGTAGGAAGG+AGG | 0.620157 | 5_1:-16321397 | None:intergenic |
| TTGTGGTAAGGAAGAAGATG+TGG | 0.620890 | 5_1:-16324326 | None:intergenic |
| CCAAACCACAGCAGTTGCGG+AGG | 0.635300 | 5_1:-16323255 | None:intergenic |
| TTGTTGAATGGATGCATGAA+CGG | 0.636150 | 5_1:-16321708 | None:intergenic |
| CATCTTCTTCCTTACCACAA+AGG | 0.639609 | 5_1:+16324329 | Msa0720370:CDS |
| ACGCATTGAAAGAGTGTGCA+GGG | 0.642204 | 5_1:-16321416 | None:intergenic |
| GATTATATAAAGAAGGTTAG+GGG | 0.655106 | 5_1:-16321449 | None:intergenic |
| TATATAAAGAAGGTTAGGGG+CGG | 0.680845 | 5_1:-16321446 | None:intergenic |
| TTTGCCTTAGCAATGGACAG+AGG | 0.681382 | 5_1:+16324055 | Msa0720370:CDS |
| TACTCACATCTGTGTCTACG+AGG | 0.683844 | 5_1:+16324213 | Msa0720370:CDS |
| GCTGCTGAAATGTACGAGGA+TGG | 0.684788 | 5_1:+16324154 | Msa0720370:CDS |
| ACAGGAATATATGGCTGACG+TGG | 0.685182 | 5_1:+16323160 | Msa0720370:intron |
| TAATTGGGCTGGTCAAAGGG+AGG | 0.685897 | 5_1:-16322040 | None:intergenic |
| GGTAAGGAAGAAGATGTGGT+AGG | 0.716806 | 5_1:-16324322 | None:intergenic |
| AGGAGCTGCTGAAATGTACG+AGG | 0.764112 | 5_1:+16324150 | Msa0720370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATTAAAAAGTTAAAAA+GGG | - | chr5_1:16322089-16322108 | None:intergenic | 10.0% |
| !! | AAAAGATTAAAAAGTTAAAA+AGG | - | chr5_1:16322090-16322109 | None:intergenic | 10.0% |
| !!! | CATTTTTGTTTAAATTTAAT+AGG | + | chr5_1:16323554-16323573 | Msa0720370:intron | 10.0% |
| !! | ATATTGAAAAATACTTGATA+AGG | - | chr5_1:16321243-16321262 | None:intergenic | 15.0% |
| !! | AAAAATTGTAACATAAACAT+TGG | - | chr5_1:16322229-16322248 | None:intergenic | 15.0% |
| !! | TGAAAAAATTATTTAGATTG+TGG | + | chr5_1:16323474-16323493 | Msa0720370:intron | 15.0% |
| !! | GAAAAAATTATTTAGATTGT+GGG | + | chr5_1:16323475-16323494 | Msa0720370:intron | 15.0% |
| !!! | TAACTTTTTCTATATTCAAT+AGG | - | chr5_1:16323964-16323983 | None:intergenic | 15.0% |
| !!! | TCAAACATTTTAACTTATAA+AGG | + | chr5_1:16324370-16324389 | Msa0720370:intron | 15.0% |
| !!! | TTTATTTGATTTTGACTATA+TGG | + | chr5_1:16324454-16324473 | Msa0720370:intron | 15.0% |
| !! | ATAGAAAGAAAAAAGAGAAA+GGG | - | chr5_1:16321318-16321337 | None:intergenic | 20.0% |
| !! | AGATTATATAAAGAAGGTTA+GGG | - | chr5_1:16321453-16321472 | None:intergenic | 20.0% |
| !! | TAGATTATATAAAGAAGGTT+AGG | - | chr5_1:16321454-16321473 | None:intergenic | 20.0% |
| !! | AGAGTTAGATTATATAAAGA+AGG | - | chr5_1:16321459-16321478 | None:intergenic | 20.0% |
| !! | AATGATGAAAATAAAACTGT+TGG | - | chr5_1:16321545-16321564 | None:intergenic | 20.0% |
| !! | ATTCATCTTAAATGAATAAG+TGG | + | chr5_1:16321775-16321794 | Msa0720370:intron | 20.0% |
| !! | TTATGCTATGATAATCAAAA+GGG | - | chr5_1:16321976-16321995 | None:intergenic | 20.0% |
| !! | ATTATGCTATGATAATCAAA+AGG | - | chr5_1:16321977-16321996 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTACATCATAATT+GGG | - | chr5_1:16322058-16322077 | None:intergenic | 20.0% |
| !! | GATCAAATTTCATAGAAATT+TGG | + | chr5_1:16322282-16322301 | Msa0720370:intron | 20.0% |
| !!! | TTTCATAGAAATTTGGATTT+TGG | + | chr5_1:16322289-16322308 | Msa0720370:intron | 20.0% |
| !! | AAGCACTAATACAAATTTAA+AGG | - | chr5_1:16322453-16322472 | None:intergenic | 20.0% |
| !! | CTAAGCAAATTATTGTAATT+TGG | + | chr5_1:16322626-16322645 | Msa0720370:intron | 20.0% |
| !! | TTAAATGACTAAGACATATT+TGG | - | chr5_1:16322709-16322728 | None:intergenic | 20.0% |
| !! | AAAAACAAATACTTCTACAT+GGG | - | chr5_1:16323076-16323095 | None:intergenic | 20.0% |
| !! | TAAAAACAAATACTTCTACA+TGG | - | chr5_1:16323077-16323096 | None:intergenic | 20.0% |
| !! | TATACTTTAAACATTGTGTT+TGG | + | chr5_1:16323370-16323389 | Msa0720370:intron | 20.0% |
| !!! | ATAGGTTAAAGTTTGAAATT+TGG | + | chr5_1:16323572-16323591 | Msa0720370:intron | 20.0% |
| !!! | TATCAAAAGACACAATTTTA+TGG | - | chr5_1:16323713-16323732 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTATATAACATGT+GGG | - | chr5_1:16324717-16324736 | None:intergenic | 20.0% |
| !!! | AATTTGTTGTATATAACATG+TGG | - | chr5_1:16324718-16324737 | None:intergenic | 20.0% |
| !!! | TTACTTTTGACAAAATAAAG+TGG | + | chr5_1:16324832-16324851 | Msa0720370:three_prime_UTR | 20.0% |
| !!! | TACTTTTGACAAAATAAAGT+GGG | + | chr5_1:16324833-16324852 | Msa0720370:three_prime_UTR | 20.0% |
| ! | GATAGAAAGAAAAAAGAGAA+AGG | - | chr5_1:16321319-16321338 | None:intergenic | 25.0% |
| ! | GATTATATAAAGAAGGTTAG+GGG | - | chr5_1:16321452-16321471 | None:intergenic | 25.0% |
| ! | TGTTGTAAGAAAGAAAAGAA+AGG | - | chr5_1:16321484-16321503 | None:intergenic | 25.0% |
| ! | TTTCTCATAATCTTTCAACT+AGG | + | chr5_1:16321563-16321582 | Msa0720370:five_prime_UTR | 25.0% |
| ! | ATATGTACCATATTGTTGAA+TGG | - | chr5_1:16321723-16321742 | None:intergenic | 25.0% |
| !! | GCTCGATTGATAATAATATT+GGG | - | chr5_1:16321835-16321854 | None:intergenic | 25.0% |
| !! | AGCTCGATTGATAATAATAT+TGG | - | chr5_1:16321836-16321855 | None:intergenic | 25.0% |
| !! | GTTTTTGCTTACATCATAAT+TGG | - | chr5_1:16322059-16322078 | None:intergenic | 25.0% |
| ! | TAATTCTAGATAGACTCTTA+AGG | - | chr5_1:16322204-16322223 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTTAGTTGTCA+TGG | - | chr5_1:16322620-16322639 | None:intergenic | 25.0% |
| ! | TTGTTACTAATCAATCATGA+TGG | + | chr5_1:16322832-16322851 | Msa0720370:intron | 25.0% |
| !! | CAATGATCCAAATTTTGTTA+TGG | + | chr5_1:16322890-16322909 | Msa0720370:intron | 25.0% |
| !! | TAATTGATGATAACATGTGT+CGG | + | chr5_1:16323131-16323150 | Msa0720370:intron | 25.0% |
| ! | TAATGATTGAATAGAAGTCT+TGG | - | chr5_1:16323410-16323429 | None:intergenic | 25.0% |
| !! | CTTTTGATAAGATTCTTATG+TGG | + | chr5_1:16323724-16323743 | Msa0720370:intron | 25.0% |
| ! | AATGTACAAACAAACAGTTA+TGG | + | chr5_1:16323996-16324015 | Msa0720370:intron | 25.0% |
| !! | AAAGGTATGACTGAATTATA+TGG | + | chr5_1:16324347-16324366 | Msa0720370:intron | 25.0% |
| !!! | CTTATAAAGGTGTTCAAATA+AGG | + | chr5_1:16324383-16324402 | Msa0720370:intron | 25.0% |
| !!! | GTTCAAATAAGGTTGTTTTA+TGG | + | chr5_1:16324394-16324413 | Msa0720370:intron | 25.0% |
| !!! | GACTCATTCATTTAGTTTTA+AGG | + | chr5_1:16324427-16324446 | Msa0720370:intron | 25.0% |
| ! | CAAGAAGTTGAACAAATTAA+TGG | + | chr5_1:16324561-16324580 | Msa0720370:CDS | 25.0% |
| ! | GTCAAAAGTAAAAGTAACAA+CGG | - | chr5_1:16324823-16324842 | None:intergenic | 25.0% |
| CAATATTCTATCTGTATACG+TGG | + | chr5_1:16321257-16321276 | Msa0720370:five_prime_UTR | 30.0% | |
| AACAAACACACAAACGAATA+TGG | + | chr5_1:16321586-16321605 | Msa0720370:exon | 30.0% | |
| ! | TGACTAGTTATGTCAAAAGA+AGG | - | chr5_1:16321614-16321633 | None:intergenic | 30.0% |
| TTTGAAGAAGTCTTTGAACA+AGG | - | chr5_1:16321679-16321698 | None:intergenic | 30.0% | |
| !!! | TTTTGGAAGTACTATCTTCT+TGG | + | chr5_1:16322306-16322325 | Msa0720370:intron | 30.0% |
| AGAAGAAACTAGAGTTAAGA+GGG | - | chr5_1:16322558-16322577 | None:intergenic | 30.0% | |
| TAGAAGAAACTAGAGTTAAG+AGG | - | chr5_1:16322559-16322578 | None:intergenic | 30.0% | |
| TATGTCTTAGTCATTTAAGC+TGG | + | chr5_1:16322711-16322730 | Msa0720370:intron | 30.0% | |
| CAAGTTGCCATAACAAAATT+TGG | - | chr5_1:16322900-16322919 | None:intergenic | 30.0% | |
| AAGAGTTGCTACAAAAACAT+AGG | + | chr5_1:16322979-16322998 | Msa0720370:intron | 30.0% | |
| CAATGTATTTCATCCAAATC+AGG | - | chr5_1:16323305-16323324 | None:intergenic | 30.0% | |
| !! | CTGATTTGGATGAAATACAT+TGG | + | chr5_1:16323303-16323322 | Msa0720370:CDS | 30.0% |
| TCAGAATCATCTTATCTGAT+CGG | - | chr5_1:16323672-16323691 | None:intergenic | 30.0% | |
| CATCAGAATCATCTTATCAA+AGG | - | chr5_1:16323778-16323797 | None:intergenic | 30.0% | |
| TTGATAAGATGATTCTGATG+TGG | + | chr5_1:16323778-16323797 | Msa0720370:intron | 30.0% | |
| TTAGAATCATCTGATCTGAT+CGG | - | chr5_1:16323842-16323861 | None:intergenic | 30.0% | |
| TAAAATTGTATGACTGCATG+CGG | + | chr5_1:16323889-16323908 | Msa0720370:intron | 30.0% | |
| AATATGGTATCAATCAATGC+TGG | + | chr5_1:16324082-16324101 | Msa0720370:CDS | 30.0% | |
| CACCAAAAATCCTAAATCAA+CGG | - | chr5_1:16324191-16324210 | None:intergenic | 30.0% | |
| ATAATTCAGTCATACCTTTG+TGG | - | chr5_1:16324346-16324365 | None:intergenic | 30.0% | |
| GAAGTTGAACAAATTAATGG+TGG | + | chr5_1:16324564-16324583 | Msa0720370:CDS | 30.0% | |
| AACCTTTAGTTGTTCTTATG+AGG | + | chr5_1:16324647-16324666 | Msa0720370:three_prime_UTR | 30.0% | |
| ACCTTTAGTTGTTCTTATGA+GGG | + | chr5_1:16324648-16324667 | Msa0720370:three_prime_UTR | 30.0% | |
| CACAAATACAATTTAGATGC+AGG | - | chr5_1:16324893-16324912 | None:intergenic | 30.0% | |
| GAAAGAAAAAAGAGAAAGGG+TGG | - | chr5_1:16321315-16321334 | None:intergenic | 35.0% | |
| GGTAGTTGTAGTTTGATAGA+TGG | - | chr5_1:16321379-16321398 | None:intergenic | 35.0% | |
| TATATAAAGAAGGTTAGGGG+CGG | - | chr5_1:16321449-16321468 | None:intergenic | 35.0% | |
| TAGTCATACTGTTTGTGTCA+TGG | + | chr5_1:16321628-16321647 | Msa0720370:CDS | 35.0% | |
| GTTCAAAGACTTCTTCAAAG+AGG | + | chr5_1:16321680-16321699 | Msa0720370:CDS | 35.0% | |
| TTGTTGAATGGATGCATGAA+CGG | - | chr5_1:16321711-16321730 | None:intergenic | 35.0% | |
| CATGCATCCATTCAACAATA+TGG | + | chr5_1:16321713-16321732 | Msa0720370:CDS | 35.0% | |
| ATCAATCGAGCTAAGTTCAT+TGG | + | chr5_1:16321844-16321863 | Msa0720370:intron | 35.0% | |
| TCAATCGAGCTAAGTTCATT+GGG | + | chr5_1:16321845-16321864 | Msa0720370:intron | 35.0% | |
| CTGTTGATATTGTTCTGCTT+TGG | + | chr5_1:16321881-16321900 | Msa0720370:intron | 35.0% | |
| AGCATAATTGATGCTCTTAG+AGG | + | chr5_1:16321989-16322008 | Msa0720370:CDS | 35.0% | |
| AGCAAGCAAACACCATTTAT+TGG | + | chr5_1:16322487-16322506 | Msa0720370:intron | 35.0% | |
| ! | ACTCTAGTTTCTTCTACTTC+TGG | + | chr5_1:16322563-16322582 | Msa0720370:intron | 35.0% |
| ! | CTCTAGTTTCTTCTACTTCT+GGG | + | chr5_1:16322564-16322583 | Msa0720370:intron | 35.0% |
| GACTAAGACATATTTGGTCA+AGG | - | chr5_1:16322703-16322722 | None:intergenic | 35.0% | |
| TTTGATATTTGCACGCAATG+TGG | + | chr5_1:16322859-16322878 | Msa0720370:intron | 35.0% | |
| !!! | TGCAGTGTTTTAGTCAACTA+TGG | - | chr5_1:16323100-16323119 | None:intergenic | 35.0% |
| CGGTAATGAACAGGAATATA+TGG | + | chr5_1:16323151-16323170 | Msa0720370:intron | 35.0% | |
| TAAGACCATAGAACCTGATT+TGG | + | chr5_1:16323289-16323308 | Msa0720370:CDS | 35.0% | |
| TTCATCCAAATCAGGTTCTA+TGG | - | chr5_1:16323297-16323316 | None:intergenic | 35.0% | |
| CAATTTCTGTCGCAAATTCA+AGG | + | chr5_1:16323334-16323353 | Msa0720370:CDS | 35.0% | |
| TTGATCAGATGATTCTGATG+TGG | + | chr5_1:16323608-16323627 | Msa0720370:intron | 35.0% | |
| CAGATAAGATGATTCTGATG+TGG | + | chr5_1:16323674-16323693 | Msa0720370:intron | 35.0% | |
| CAGATCAGATGATTCTAATG+TGG | + | chr5_1:16323844-16323863 | Msa0720370:intron | 35.0% | |
| ACAAACAAACAGTTATGGCA+TGG | + | chr5_1:16324001-16324020 | Msa0720370:intron | 35.0% | |
| CAAACAAACAGTTATGGCAT+GGG | + | chr5_1:16324002-16324021 | Msa0720370:intron | 35.0% | |
| !!! | GACCGTTGATTTAGGATTTT+TGG | + | chr5_1:16324186-16324205 | Msa0720370:CDS | 35.0% |
| !!! | CGTTGATTTAGGATTTTTGG+TGG | + | chr5_1:16324189-16324208 | Msa0720370:CDS | 35.0% |
| TAACTTATGTGCAAGCTGAA+CGG | - | chr5_1:16324299-16324318 | None:intergenic | 35.0% | |
| !! | CAAATTAATGGTGGACTTTG+AGG | + | chr5_1:16324573-16324592 | Msa0720370:CDS | 35.0% |
| !! | ACTTTGAGGCTTAACTTCAA+TGG | + | chr5_1:16324587-16324606 | Msa0720370:exon | 35.0% |
| GCTTAACTTCAATGGTTAAG+TGG | + | chr5_1:16324595-16324614 | Msa0720370:exon | 35.0% | |
| ! | TGGTTAAGTGGTGATCTTTT+TGG | + | chr5_1:16324607-16324626 | Msa0720370:three_prime_UTR | 35.0% |
| TCCCTCATAAGAACAACTAA+AGG | - | chr5_1:16324652-16324671 | None:intergenic | 35.0% | |
| ! | TGATGTTTGTGTGTGTTTTG+GGG | - | chr5_1:16324870-16324889 | None:intergenic | 35.0% |
| ! | GTGATGTTTGTGTGTGTTTT+GGG | - | chr5_1:16324871-16324890 | None:intergenic | 35.0% |
| ATGGATGCTTCAGGTCAATT+AGG | + | chr5_1:16321647-16321666 | Msa0720370:CDS | 40.0% | |
| AGAATTCGAGATTCGAACTC+TGG | + | chr5_1:16321798-16321817 | Msa0720370:intron | 40.0% | |
| TTGTTCTGCTTTGGTTATGC+AGG | + | chr5_1:16321890-16321909 | Msa0720370:intron | 40.0% | |
| CAGGAGAAGATCCATTCAAT+GGG | + | chr5_1:16321909-16321928 | Msa0720370:intron | 40.0% | |
| TCAGCTGAAATCCCATTGAA+TGG | - | chr5_1:16321923-16321942 | None:intergenic | 40.0% | |
| !! | TCATAATTGGGCTGGTCAAA+GGG | - | chr5_1:16322046-16322065 | None:intergenic | 40.0% |
| !! | ATCATAATTGGGCTGGTCAA+AGG | - | chr5_1:16322047-16322066 | None:intergenic | 40.0% |
| TGCTTACATCATAATTGGGC+TGG | - | chr5_1:16322054-16322073 | None:intergenic | 40.0% | |
| AAGTGAGTAACTCAGGCAAA+TGG | - | chr5_1:16322528-16322547 | None:intergenic | 40.0% | |
| AACAAGCAAGTGAGTAACTC+AGG | - | chr5_1:16322535-16322554 | None:intergenic | 40.0% | |
| ! | AACATGTGTCGGTAATGAAC+AGG | + | chr5_1:16323142-16323161 | Msa0720370:intron | 40.0% |
| GAATAGAAGTCTTGGACAGT+AGG | - | chr5_1:16323402-16323421 | None:intergenic | 40.0% | |
| CAGATGATTCTAATGTGGTG+TGG | + | chr5_1:16323849-16323868 | Msa0720370:intron | 40.0% | |
| AATGGACAGAGGAGTGAATA+TGG | + | chr5_1:16324066-16324085 | Msa0720370:CDS | 40.0% | |
| ATCAAACACCCTTACTTGAG+AGG | + | chr5_1:16324130-16324149 | Msa0720370:CDS | 40.0% | |
| !! | GTCTTTGTGACCGTTGATTT+AGG | + | chr5_1:16324178-16324197 | Msa0720370:CDS | 40.0% |
| TTGTGGTAAGGAAGAAGATG+TGG | - | chr5_1:16324329-16324348 | None:intergenic | 40.0% | |
| CATCTTCTTCCTTACCACAA+AGG | + | chr5_1:16324329-16324348 | Msa0720370:CDS | 40.0% | |
| TCAGTCATACCTTTGTGGTA+AGG | - | chr5_1:16324341-16324360 | None:intergenic | 40.0% | |
| ATGTTGTGCAGTGATGACTA+TGG | + | chr5_1:16324508-16324527 | Msa0720370:intron | 40.0% | |
| !! | GATGTTTGTGTGTGTTTTGG+GGG | - | chr5_1:16324869-16324888 | None:intergenic | 40.0% |
| ! | GGTGATGTTTGTGTGTGTTT+TGG | - | chr5_1:16324872-16324891 | None:intergenic | 40.0% |
| CTATCTGTCTCTTTGCCCTT+TGG | + | chr5_1:16321334-16321353 | Msa0720370:five_prime_UTR | 45.0% | |
| TGTCTCTTTGCCCTTTGGTT+TGG | + | chr5_1:16321339-16321358 | Msa0720370:five_prime_UTR | 45.0% | |
| ! | GTCTCTTTGCCCTTTGGTTT+GGG | + | chr5_1:16321340-16321359 | Msa0720370:five_prime_UTR | 45.0% |
| !! | TCTCTTTGCCCTTTGGTTTG+GGG | + | chr5_1:16321341-16321360 | Msa0720370:five_prime_UTR | 45.0% |
| ! | AAAGAGTGTGCAGGGTAGAT+AGG | - | chr5_1:16321411-16321430 | None:intergenic | 45.0% |
| ! | ACGCATTGAAAGAGTGTGCA+GGG | - | chr5_1:16321419-16321438 | None:intergenic | 45.0% |
| ! | AACGCATTGAAAGAGTGTGC+AGG | - | chr5_1:16321420-16321439 | None:intergenic | 45.0% |
| GTTTGTGTCATGGATGCTTC+AGG | + | chr5_1:16321638-16321657 | Msa0720370:CDS | 45.0% | |
| GCAGGAGAAGATCCATTCAA+TGG | + | chr5_1:16321908-16321927 | Msa0720370:intron | 45.0% | |
| ACACCATTTATTGGTGCACG+TGG | + | chr5_1:16322496-16322515 | Msa0720370:intron | 45.0% | |
| CTACCACGTGCACCAATAAA+TGG | - | chr5_1:16322502-16322521 | None:intergenic | 45.0% | |
| CATTTATTGGTGCACGTGGT+AGG | + | chr5_1:16322500-16322519 | Msa0720370:intron | 45.0% | |
| ! | AATACCCTTTTCGTACGCCA+AGG | + | chr5_1:16322594-16322613 | Msa0720370:intron | 45.0% |
| TTGCTTAGTTGTCATGGCCT+TGG | - | chr5_1:16322614-16322633 | None:intergenic | 45.0% | |
| ACAGGAATATATGGCTGACG+TGG | + | chr5_1:16323160-16323179 | Msa0720370:intron | 45.0% | |
| AACAGCGTTTGCCTTAGCAA+TGG | + | chr5_1:16324048-16324067 | Msa0720370:CDS | 45.0% | |
| TTTGCCTTAGCAATGGACAG+AGG | + | chr5_1:16324055-16324074 | Msa0720370:CDS | 45.0% | |
| TACTCACATCTGTGTCTACG+AGG | + | chr5_1:16324213-16324232 | Msa0720370:CDS | 45.0% | |
| TACGAGGATGTCTCATCGTA+CGG | + | chr5_1:16324229-16324248 | Msa0720370:CDS | 45.0% | |
| GGTAAGGAAGAAGATGTGGT+AGG | - | chr5_1:16324325-16324344 | None:intergenic | 45.0% | |
| !! | CTCTTTGCCCTTTGGTTTGG+GGG | + | chr5_1:16321342-16321361 | Msa0720370:five_prime_UTR | 50.0% |
| AGGGTAGATAGGTAGGAAGG+AGG | - | chr5_1:16321400-16321419 | None:intergenic | 50.0% | |
| TGCAGGGTAGATAGGTAGGA+AGG | - | chr5_1:16321403-16321422 | None:intergenic | 50.0% | |
| AGTGTGCAGGGTAGATAGGT+AGG | - | chr5_1:16321407-16321426 | None:intergenic | 50.0% | |
| GATGCTCTTAGAGGTTGCTC+TGG | + | chr5_1:16321998-16322017 | Msa0720370:CDS | 50.0% | |
| !! | TAATTGGGCTGGTCAAAGGG+AGG | - | chr5_1:16322043-16322062 | None:intergenic | 50.0% |
| ! | ATGGCCTTGGCGTACGAAAA+GGG | - | chr5_1:16322601-16322620 | None:intergenic | 50.0% |
| CTGATGTGGCTGATTGCATG+CGG | + | chr5_1:16323622-16323641 | Msa0720370:intron | 50.0% | |
| GTGGTGTGGTTGACTGTATG+CGG | + | chr5_1:16323863-16323882 | Msa0720370:intron | 50.0% | |
| CACTCCTCTGTCCATTGCTA+AGG | - | chr5_1:16324062-16324081 | None:intergenic | 50.0% | |
| CAGCAGCTCCTCTCAAGTAA+GGG | - | chr5_1:16324141-16324160 | None:intergenic | 50.0% | |
| TCAGCAGCTCCTCTCAAGTA+AGG | - | chr5_1:16324142-16324161 | None:intergenic | 50.0% | |
| AGGAGCTGCTGAAATGTACG+AGG | + | chr5_1:16324150-16324169 | Msa0720370:CDS | 50.0% | |
| GCTGCTGAAATGTACGAGGA+TGG | + | chr5_1:16324154-16324173 | Msa0720370:CDS | 50.0% | |
| ! | CATGGCCTTGGCGTACGAAA+AGG | - | chr5_1:16322602-16322621 | None:intergenic | 55.0% |
| CCTCCAAACCACAGCAGTTG+CGG | - | chr5_1:16323261-16323280 | None:intergenic | 55.0% | |
| ! | CGCAACTGCTGTGGTTTGGA+GGG | + | chr5_1:16323259-16323278 | Msa0720370:CDS | 55.0% |
| GCGCACACCCCCAAACCAAA+GGG | - | chr5_1:16321352-16321371 | None:intergenic | 60.0% | |
| CACATCCTCCGCAACTGCTG+TGG | + | chr5_1:16323250-16323269 | Msa0720370:CDS | 60.0% | |
| CCAAACCACAGCAGTTGCGG+AGG | - | chr5_1:16323258-16323277 | None:intergenic | 60.0% | |
| CCTCCGCAACTGCTGTGGTT+TGG | + | chr5_1:16323255-16323274 | Msa0720370:CDS | 60.0% | |
| ! | CCGCAACTGCTGTGGTTTGG+AGG | + | chr5_1:16323258-16323277 | Msa0720370:CDS | 60.0% |
| CGCGCACACCCCCAAACCAA+AGG | - | chr5_1:16321353-16321372 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 16321226 | 16324957 | 16321226 | ID=Msa0720370;Name=Msa0720370 |
| chr5_1 | mRNA | 16321226 | 16324957 | 16321226 | ID=Msa0720370-mRNA-1;Parent=Msa0720370;Name=Msa0720370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=351|1|1|1|0.8|0.66|6|357|298 |
| chr5_1 | exon | 16321226 | 16321520 | 16321226 | ID=Msa0720370-mRNA-1:exon:6234;Parent=Msa0720370-mRNA-1 |
| chr5_1 | exon | 16321549 | 16321734 | 16321549 | ID=Msa0720370-mRNA-1:exon:6235;Parent=Msa0720370-mRNA-1 |
| chr5_1 | exon | 16321912 | 16322066 | 16321912 | ID=Msa0720370-mRNA-1:exon:6236;Parent=Msa0720370-mRNA-1 |
| chr5_1 | exon | 16323164 | 16323355 | 16323164 | ID=Msa0720370-mRNA-1:exon:6237;Parent=Msa0720370-mRNA-1 |
| chr5_1 | exon | 16324013 | 16324350 | 16324013 | ID=Msa0720370-mRNA-1:exon:6238;Parent=Msa0720370-mRNA-1 |
| chr5_1 | exon | 16324519 | 16324957 | 16324519 | ID=Msa0720370-mRNA-1:exon:6239;Parent=Msa0720370-mRNA-1 |
| chr5_1 | five_prime_UTR | 16321226 | 16321520 | 16321226 | ID=Msa0720370-mRNA-1:five_prime_utr;Parent=Msa0720370-mRNA-1 |
| chr5_1 | five_prime_UTR | 16321549 | 16321604 | 16321549 | ID=Msa0720370-mRNA-1:five_prime_utr;Parent=Msa0720370-mRNA-1 |
| chr5_1 | CDS | 16321605 | 16321734 | 16321605 | ID=Msa0720370-mRNA-1:cds;Parent=Msa0720370-mRNA-1 |
| chr5_1 | CDS | 16321912 | 16322066 | 16321912 | ID=Msa0720370-mRNA-1:cds;Parent=Msa0720370-mRNA-1 |
| chr5_1 | CDS | 16323164 | 16323355 | 16323164 | ID=Msa0720370-mRNA-1:cds;Parent=Msa0720370-mRNA-1 |
| chr5_1 | CDS | 16324013 | 16324350 | 16324013 | ID=Msa0720370-mRNA-1:cds;Parent=Msa0720370-mRNA-1 |
| chr5_1 | CDS | 16324519 | 16324600 | 16324519 | ID=Msa0720370-mRNA-1:cds;Parent=Msa0720370-mRNA-1 |
| chr5_1 | three_prime_UTR | 16324601 | 16324957 | 16324601 | ID=Msa0720370-mRNA-1:three_prime_utr;Parent=Msa0720370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
