Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762270 | sp|Q8VYN6|PFKA5_ARATH | 78.320 | 512 | 109 | 2 | 20 | 530 | 27 | 537 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762270 | G7JXR3 | 97.936 | 533 | 8 | 1 | 1 | 530 | 1 | 533 | 0.0 | 1083 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0762270 | Msa0847880 | 0.808002 | 3.836582e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762270 | MtrunA17_Chr5g0412481 | 97.936 | 533 | 8 | 1 | 1 | 530 | 1 | 533 | 0.0 | 1083 |
| Msa0762270 | MtrunA17_Chr8g0367681 | 79.623 | 530 | 101 | 2 | 3 | 530 | 5 | 529 | 0.0 | 876 |
| Msa0762270 | MtrunA17_Chr1g0196891 | 47.380 | 458 | 208 | 7 | 79 | 530 | 90 | 520 | 9.25e-135 | 401 |
| Msa0762270 | MtrunA17_Chr6g0487421 | 52.507 | 379 | 172 | 4 | 158 | 530 | 74 | 450 | 8.36e-134 | 398 |
| Msa0762270 | MtrunA17_Chr3g0140611 | 52.507 | 379 | 172 | 4 | 158 | 530 | 78 | 454 | 2.47e-133 | 397 |
| Msa0762270 | MtrunA17_Chr8g0389631 | 51.842 | 380 | 174 | 4 | 158 | 530 | 77 | 454 | 3.60e-132 | 392 |
| Msa0762270 | MtrunA17_Chr2g0330871 | 45.098 | 459 | 217 | 6 | 79 | 530 | 23 | 453 | 1.39e-129 | 385 |
| Msa0762270 | MtrunA17_Chr4g0076591 | 42.075 | 347 | 195 | 2 | 190 | 530 | 92 | 438 | 3.15e-94 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762270 | AT2G22480.1 | 78.320 | 512 | 109 | 2 | 20 | 530 | 27 | 537 | 0.0 | 836 |
| Msa0762270 | AT5G56630.1 | 53.050 | 377 | 171 | 3 | 158 | 530 | 77 | 451 | 1.10e-136 | 405 |
| Msa0762270 | AT4G26270.1 | 53.018 | 381 | 166 | 5 | 158 | 530 | 77 | 452 | 8.11e-135 | 400 |
| Msa0762270 | AT4G32840.1 | 52.926 | 376 | 172 | 4 | 158 | 530 | 78 | 451 | 8.83e-134 | 396 |
| Msa0762270 | AT4G29220.1 | 45.969 | 459 | 212 | 7 | 79 | 530 | 24 | 453 | 3.21e-133 | 395 |
| Msa0762270 | AT5G61580.1 | 51.715 | 379 | 175 | 4 | 158 | 530 | 128 | 504 | 4.28e-131 | 392 |
| Msa0762270 | AT5G61580.2 | 52.231 | 381 | 169 | 6 | 158 | 530 | 128 | 503 | 3.31e-130 | 390 |
| Msa0762270 | AT5G47810.1 | 44.498 | 418 | 208 | 6 | 121 | 529 | 36 | 438 | 1.43e-116 | 352 |
Find 128 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCTGCCTTTACTTCTTC+TGG | 0.234836 | 5_2:+20206390 | None:intergenic |
| CCATGAAAGTCTCTAGTTAT+AGG | 0.260365 | 5_2:+20207889 | None:intergenic |
| CTCTCAGGTGGCAGCCTATT+AGG | 0.270534 | 5_2:-20205775 | Msa0762270:CDS |
| CGGATCAAAGTGTGTGTTAT+TGG | 0.270583 | 5_2:-20205299 | Msa0762270:CDS |
| GAGATTGTTGGTATTCCTTT+TGG | 0.274193 | 5_2:-20205983 | Msa0762270:CDS |
| ACTTACATACCTCGGGAATT+AGG | 0.276615 | 5_2:+20204971 | None:intergenic |
| AATCGGGATTGTGAAATTAA+TGG | 0.277060 | 5_2:-20205055 | Msa0762270:CDS |
| TAGTGAAATTGTGGATAGTT+TGG | 0.287015 | 5_2:-20205728 | Msa0762270:CDS |
| GCTTTGGTATTGCAGGTTCA+TGG | 0.290416 | 5_2:-20203040 | Msa0762270:intron |
| GAAGGGTGGTGGTGAGGTTA+GGG | 0.290525 | 5_2:+20208770 | None:intergenic |
| CTGATCCCTTTGATTCTATA+AGG | 0.291613 | 5_2:+20204826 | None:intergenic |
| CTATTGATGGACAAAACTTT+TGG | 0.291628 | 5_2:-20205248 | Msa0762270:CDS |
| GAAAAGACGATGGTTGGTTT+TGG | 0.310529 | 5_2:+20208702 | None:intergenic |
| GCATTGATCCTGGCTGTAAT+TGG | 0.311570 | 5_2:-20206743 | Msa0762270:CDS |
| TTTCATGGGAATTATGATTC+TGG | 0.312524 | 5_2:-20207874 | Msa0762270:CDS |
| ACTAATGATACCGATGCTTC+AGG | 0.313533 | 5_2:-20204622 | Msa0762270:CDS |
| CAGGTTCATGGTGCATTTGC+TGG | 0.329427 | 5_2:-20203028 | Msa0762270:CDS |
| CGATGCCACATTCGACTGTT+TGG | 0.331058 | 5_2:+20202917 | None:intergenic |
| TGAAGGGTGGTGGTGAGGTT+AGG | 0.342291 | 5_2:+20208769 | None:intergenic |
| AACGCTAAACTTGGAGATAT+CGG | 0.349503 | 5_2:-20204598 | Msa0762270:CDS |
| TGCGATATTACTTCGGTGAT+TGG | 0.351808 | 5_2:+20202956 | None:intergenic |
| GTAATCACACTTGAAATATA+TGG | 0.362471 | 5_2:-20206013 | Msa0762270:CDS |
| TTAAACTTATCTTTCCAATC+AGG | 0.379826 | 5_2:+20208604 | None:intergenic |
| TTGATTACAATGATCCTGAT+TGG | 0.380703 | 5_2:-20208618 | Msa0762270:CDS |
| AGACAATGATATCCTATTGA+TGG | 0.388795 | 5_2:-20205261 | Msa0762270:CDS |
| TTGATCCAACATACATGATT+CGG | 0.395697 | 5_2:-20204126 | Msa0762270:CDS |
| CTCTTTGTGTTGGGTGGAAA+TGG | 0.402110 | 5_2:-20205542 | Msa0762270:CDS |
| AGTAATATCGCATCCTCAAT+TGG | 0.405969 | 5_2:-20202945 | Msa0762270:CDS |
| CTCCGCGTGAAACTCCTAAT+AGG | 0.411712 | 5_2:+20205761 | None:intergenic |
| TGTTAGAGACTTTGAATGAA+TGG | 0.419132 | 5_2:+20208680 | None:intergenic |
| AATAATAGCAAACCTCTTGT+TGG | 0.426233 | 5_2:+20204566 | None:intergenic |
| ATCGGGATTGTGAAATTAAT+GGG | 0.439443 | 5_2:-20205054 | Msa0762270:CDS |
| ACGCTAAACTTGGAGATATC+GGG | 0.447539 | 5_2:-20204597 | Msa0762270:CDS |
| TCAAATGAAGTCGGGTTGAC+CGG | 0.450420 | 5_2:+20202880 | None:intergenic |
| CCTATAACTAGAGACTTTCA+TGG | 0.455161 | 5_2:-20207889 | Msa0762270:CDS |
| TGATCCAACATACATGATTC+GGG | 0.455405 | 5_2:-20204125 | Msa0762270:CDS |
| CATAGTGCATATCACGGAAT+CGG | 0.460277 | 5_2:-20205072 | Msa0762270:CDS |
| CTGTTTGGATCCACCAATTG+AGG | 0.462985 | 5_2:+20202932 | None:intergenic |
| CTAATGATACCGATGCTTCA+GGG | 0.464291 | 5_2:-20204621 | Msa0762270:CDS |
| GAACGCATAGAAGAAGCATC+AGG | 0.466750 | 5_2:+20208532 | None:intergenic |
| CATTGATCCTGGCTGTAATT+GGG | 0.472888 | 5_2:-20206742 | Msa0762270:CDS |
| ACTTGTGGAGGACTGTGTCC+TGG | 0.474252 | 5_2:-20206363 | Msa0762270:CDS |
| GAAAATAATCAAATGAAGTC+GGG | 0.476259 | 5_2:+20202872 | None:intergenic |
| AAGGTTCCTTTCAATTTACA+TGG | 0.477045 | 5_2:-20204879 | Msa0762270:CDS |
| AATAAATTCTGCATATATAG+AGG | 0.477305 | 5_2:-20205192 | Msa0762270:intron |
| ATCAATCTGTCCACTGGCTA+AGG | 0.477541 | 5_2:+20204999 | None:intergenic |
| GGAGTTTCACGCGGAGGACC+TGG | 0.478048 | 5_2:-20205754 | Msa0762270:CDS |
| GCTTCAGGGAACGCTAAACT+TGG | 0.478634 | 5_2:-20204607 | Msa0762270:CDS |
| TTCAATTTACATGGACCTCA+TGG | 0.479511 | 5_2:-20204870 | Msa0762270:CDS |
| CAAGTACCTTATAGAATCAA+AGG | 0.480379 | 5_2:-20204832 | Msa0762270:CDS |
| GGTGCATTTGCTGGATATAG+TGG | 0.480453 | 5_2:-20203019 | Msa0762270:CDS |
| ATCAACGTGCTCTTTGTGTT+GGG | 0.484409 | 5_2:-20205551 | Msa0762270:CDS |
| GTTTGTGTGGCAGAGGGAGC+AGG | 0.484756 | 5_2:-20204798 | Msa0762270:CDS |
| GATCAACGTGCTCTTTGTGT+TGG | 0.490624 | 5_2:-20205552 | Msa0762270:CDS |
| TGTGGCAGAGGGAGCAGGAC+AGG | 0.492036 | 5_2:-20204793 | Msa0762270:intron |
| GTTGATTGATTGCAGGAAAG+AGG | 0.494138 | 5_2:-20205575 | Msa0762270:intron |
| GTTCAAAACATTCATCTCTC+AGG | 0.497136 | 5_2:-20205790 | Msa0762270:CDS |
| CAAAGAGTTGATGGAAATAC+CGG | 0.500018 | 5_2:-20205942 | Msa0762270:intron |
| ATAGTGCATATCACGGAATC+GGG | 0.501886 | 5_2:-20205071 | Msa0762270:CDS |
| TCTTAACGATGTCATTAGAC+AGG | 0.502961 | 5_2:-20206340 | Msa0762270:intron |
| CTTCAAACCAGAAGAAGTAA+AGG | 0.503634 | 5_2:-20206397 | Msa0762270:CDS |
| AGAAAATAATCAAATGAAGT+CGG | 0.506105 | 5_2:+20202871 | None:intergenic |
| TAATGACAGAGTGCTTCTTA+AGG | 0.510674 | 5_2:-20207824 | Msa0762270:intron |
| AGCTGTAGTTTGTGTGGCAG+AGG | 0.521624 | 5_2:-20204805 | Msa0762270:CDS |
| TTGATTCTATAAGGTACTTG+AGG | 0.522219 | 5_2:+20204835 | None:intergenic |
| ACCTGGAGTTAGTGAAATTG+TGG | 0.529574 | 5_2:-20205737 | Msa0762270:CDS |
| TTGATTGATTGCAGGAAAGA+GGG | 0.531805 | 5_2:-20205574 | Msa0762270:intron |
| ATTATGATTCTGGTGAGGAA+TGG | 0.538440 | 5_2:-20207864 | Msa0762270:CDS |
| CATTCATCACCTACATCTGC+TGG | 0.539977 | 5_2:-20206774 | Msa0762270:CDS |
| CAGCAGATGTAGGTGATGAA+TGG | 0.540591 | 5_2:+20206775 | None:intergenic |
| AAATTAATGGGCCGTAGCAG+TGG | 0.542200 | 5_2:-20205042 | Msa0762270:CDS |
| AAGGCAGCCATTGTTACTTG+TGG | 0.549028 | 5_2:-20206378 | Msa0762270:CDS |
| GTTTCCAGTGCTGTAAAAGA+CGG | 0.553575 | 5_2:-20205319 | Msa0762270:intron |
| GGTGGAAATGGTACACATGC+TGG | 0.556073 | 5_2:-20205530 | Msa0762270:CDS |
| CACGCCCGAATCATGTATGT+TGG | 0.556320 | 5_2:+20204121 | None:intergenic |
| TGAATGGAAAAGACGATGGT+TGG | 0.556929 | 5_2:+20208696 | None:intergenic |
| TGAGGTCCATGTAAATTGAA+AGG | 0.559778 | 5_2:+20204873 | None:intergenic |
| GGATATAGTGGCATTACAGT+AGG | 0.561938 | 5_2:-20203007 | Msa0762270:CDS |
| TGAAATTGTGGATAGTTTGG+AGG | 0.562109 | 5_2:-20205725 | Msa0762270:intron |
| AACGTGCTCTTTGTGTTGGG+TGG | 0.562712 | 5_2:-20205548 | Msa0762270:CDS |
| CTTCATCATCATCATGTGCA+TGG | 0.564878 | 5_2:-20208751 | Msa0762270:CDS |
| AAGTACCTTATAGAATCAAA+GGG | 0.565661 | 5_2:-20204831 | Msa0762270:CDS |
| GCAGCCATTGTTACTTGTGG+AGG | 0.566120 | 5_2:-20206375 | Msa0762270:CDS |
| TGTTCCACCCAATTACAGCC+AGG | 0.572176 | 5_2:+20206735 | None:intergenic |
| AAGGGTGGTGGTGAGGTTAG+GGG | 0.573747 | 5_2:+20208771 | None:intergenic |
| TTTAGCGTTCCCTGAAGCAT+CGG | 0.574332 | 5_2:+20204612 | None:intergenic |
| TCCACAATTTCACTAACTCC+AGG | 0.574739 | 5_2:+20205736 | None:intergenic |
| GCATACATCAATCTGTCCAC+TGG | 0.575151 | 5_2:+20204993 | None:intergenic |
| CACTGAGCGCCAGCAGATGT+AGG | 0.576254 | 5_2:+20206765 | None:intergenic |
| CGGGGTTTATATCCAACAAG+AGG | 0.576795 | 5_2:-20204578 | Msa0762270:intron |
| CGCTAAACTTGGAGATATCG+GGG | 0.576799 | 5_2:-20204596 | Msa0762270:CDS |
| TACTGTTCTTGGACAAAATG+CGG | 0.577922 | 5_2:-20204068 | Msa0762270:intron |
| GATTTCATTTACAGTTGTCA+AGG | 0.579795 | 5_2:-20205819 | Msa0762270:intron |
| TTGCTATGAATCCACTGCTA+CGG | 0.580298 | 5_2:+20205031 | None:intergenic |
| TGTCGAGCAAATGCATCAGA+TGG | 0.581648 | 5_2:-20204100 | Msa0762270:CDS |
| CATCGATGCTTAACTTCGAC+CGG | 0.587899 | 5_2:-20202899 | Msa0762270:CDS |
| TATGGTGTAACTGAGATTGT+TGG | 0.587899 | 5_2:-20205995 | Msa0762270:CDS |
| GGGAAAATATCAGTAACATG+AGG | 0.589366 | 5_2:+20208553 | None:intergenic |
| GGAAAATATCAGTAACATGA+GGG | 0.596785 | 5_2:+20208554 | None:intergenic |
| TTGAGGATGCGATATTACTT+CGG | 0.597150 | 5_2:+20202949 | None:intergenic |
| CATGCACATGATGATGATGA+AGG | 0.601136 | 5_2:+20208752 | None:intergenic |
| GGGTTCATCGAGCTGGACCT+CGG | 0.602038 | 5_2:-20206431 | Msa0762270:CDS |
| GCTGTAGTTTGTGTGGCAGA+GGG | 0.603354 | 5_2:-20204804 | Msa0762270:CDS |
| CTAATGACATCGTTAAGACC+AGG | 0.614698 | 5_2:+20206345 | None:intergenic |
| GATTCTGGTGAGGAATGGAA+TGG | 0.617100 | 5_2:-20207859 | Msa0762270:CDS |
| TCTTTGTGCTTCTTCAACCG+CGG | 0.622748 | 5_2:+20205217 | None:intergenic |
| GGGATCAGCTGTAGTTTGTG+TGG | 0.624112 | 5_2:-20204811 | Msa0762270:CDS |
| CAGTCCTCCACAAGTAACAA+TGG | 0.624369 | 5_2:+20206371 | None:intergenic |
| GCTGTAATTGGGTGGAACAA+TGG | 0.626331 | 5_2:-20206731 | Msa0762270:intron |
| CTATAACTAGAGACTTTCAT+GGG | 0.628864 | 5_2:-20207888 | Msa0762270:CDS |
| CAAAACATTCATCTCTCAGG+TGG | 0.633928 | 5_2:-20205787 | Msa0762270:CDS |
| AATATCGCATCCTCAATTGG+TGG | 0.636705 | 5_2:-20202942 | Msa0762270:CDS |
| GATGATGAAGGGTGGTGGTG+AGG | 0.637750 | 5_2:+20208764 | None:intergenic |
| TGATCCTGGCTGTAATTGGG+TGG | 0.639090 | 5_2:-20206739 | Msa0762270:CDS |
| ATGCAATCTTCCTTAGCCAG+TGG | 0.639507 | 5_2:-20205009 | Msa0762270:CDS |
| TGGATCCAAACAGTCGAATG+TGG | 0.644484 | 5_2:-20202922 | Msa0762270:CDS |
| AACGCATAGAAGAAGCATCA+GGG | 0.646346 | 5_2:+20208533 | None:intergenic |
| TGGGAATTATGATTCTGGTG+AGG | 0.647827 | 5_2:-20207869 | Msa0762270:CDS |
| ATGATGATGATGAAGGGTGG+TGG | 0.656421 | 5_2:+20208759 | None:intergenic |
| TGATGTATGCCTAATTCCCG+AGG | 0.666643 | 5_2:-20204980 | Msa0762270:intron |
| TAGGCACATAGTGCATATCA+CGG | 0.667976 | 5_2:-20205078 | Msa0762270:CDS |
| ATGCACATGATGATGATGAA+GGG | 0.671280 | 5_2:+20208753 | None:intergenic |
| TGAATGAATGGAAAAGACGA+TGG | 0.676616 | 5_2:+20208692 | None:intergenic |
| AGGTGACTCAAAACTCCATG+AGG | 0.677996 | 5_2:+20204855 | None:intergenic |
| CTATTAGGAGTTTCACGCGG+AGG | 0.683751 | 5_2:-20205760 | Msa0762270:CDS |
| TGCAAATGCAATTCACGACG+AGG | 0.685123 | 5_2:-20205507 | Msa0762270:intron |
| CACATGATGATGATGAAGGG+TGG | 0.713897 | 5_2:+20208756 | None:intergenic |
| AGCCTATTAGGAGTTTCACG+CGG | 0.736304 | 5_2:-20205763 | Msa0762270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACTAAAATATTTTTTTT+AGG | + | chr5_2:20203546-20203565 | None:intergenic | 10.0% |
| !! | TACATATAAAATAAAAATCA+CGG | + | chr5_2:20206043-20206062 | None:intergenic | 10.0% |
| !! | ATTAAATAGAAAATAATATC+GGG | + | chr5_2:20206508-20206527 | None:intergenic | 10.0% |
| !! | TTCAATAATATTTACATATA+TGG | + | chr5_2:20208031-20208050 | None:intergenic | 10.0% |
| !!! | TTTATGTTTTATTCTAGTTA+GGG | - | chr5_2:20203488-20203507 | Msa0762270:intron | 15.0% |
| !!! | TTTAGTTCAAAAAAATAACA+CGG | - | chr5_2:20203557-20203576 | Msa0762270:intron | 15.0% |
| !! | AGAAAAAAAAAAATTACTAG+TGG | - | chr5_2:20203686-20203705 | Msa0762270:intron | 15.0% |
| !! | AATCAATTTCATTAATAGAA+TGG | + | chr5_2:20205955-20205974 | None:intergenic | 15.0% |
| !!! | AATATTTTACTCGTTTTATT+AGG | - | chr5_2:20206545-20206564 | Msa0762270:intron | 15.0% |
| !! | TAGAATTAACATAAAAACAA+GGG | - | chr5_2:20207207-20207226 | Msa0762270:intron | 15.0% |
| !!! | TATGATTTCACTTTTATTAT+TGG | - | chr5_2:20207641-20207660 | Msa0762270:intron | 15.0% |
| !!! | TAAGTTTAAAGAAGATTTTG+AGG | - | chr5_2:20203052-20203071 | Msa0762270:intron | 20.0% |
| !!! | ACATCTTAAACAATTTTACA+AGG | + | chr5_2:20203252-20203271 | None:intergenic | 20.0% |
| !! | CACTAAAGTATATATGAATT+AGG | + | chr5_2:20203301-20203320 | None:intergenic | 20.0% |
| !! | CTAACTAGAATAAAACATAA+AGG | + | chr5_2:20203489-20203508 | None:intergenic | 20.0% |
| !!! | CTTTATGTTTTATTCTAGTT+AGG | - | chr5_2:20203487-20203506 | Msa0762270:intron | 20.0% |
| !! | ATCAATTCATTGTTCTTAAA+TGG | + | chr5_2:20204056-20204075 | None:intergenic | 20.0% |
| !!! | AACTATTGTTCATAATTTTC+CGG | + | chr5_2:20205058-20205077 | None:intergenic | 20.0% |
| !!! | AAAGATTCTGAAATTTTTGT+AGG | - | chr5_2:20205190-20205209 | Msa0762270:intron | 20.0% |
| !!! | AAGATTCTGAAATTTTTGTA+GGG | - | chr5_2:20205191-20205210 | Msa0762270:intron | 20.0% |
| !!! | AAATCTCTTTCAAAAGTTTT+TGG | - | chr5_2:20205409-20205428 | Msa0762270:intron | 20.0% |
| !!! | TAAGTTTTTTTAGTAGTTTC+TGG | - | chr5_2:20205475-20205494 | Msa0762270:intron | 20.0% |
| !!! | AAGTTTTTTTAGTAGTTTCT+GGG | - | chr5_2:20205476-20205495 | Msa0762270:intron | 20.0% |
| !!! | GAATAAATTGTTGTTTAGAA+GGG | + | chr5_2:20205739-20205758 | None:intergenic | 20.0% |
| !! | TTGTAATCTATGAATTCTTA+AGG | - | chr5_2:20206209-20206228 | Msa0762270:intron | 20.0% |
| !!! | ATATCATTGTCTATAGTTTT+CGG | + | chr5_2:20206373-20206392 | None:intergenic | 20.0% |
| !! | AATAAATTCTGCATATATAG+AGG | - | chr5_2:20206450-20206469 | Msa0762270:intron | 20.0% |
| !! | CTAGAATTAACATAAAAACA+AGG | - | chr5_2:20207206-20207225 | Msa0762270:intron | 20.0% |
| !! | TCATACATAAATACAACAAT+GGG | + | chr5_2:20207626-20207645 | None:intergenic | 20.0% |
| !! | ATCATACATAAATACAACAA+TGG | + | chr5_2:20207627-20207646 | None:intergenic | 20.0% |
| !! | AAATAATATATAGCTAGAAG+TGG | + | chr5_2:20207914-20207933 | None:intergenic | 20.0% |
| !!! | CATTTTTCATCCTTATAATT+GGG | + | chr5_2:20207946-20207965 | None:intergenic | 20.0% |
| !!! | ACATTTTTCATCCTTATAAT+TGG | + | chr5_2:20207947-20207966 | None:intergenic | 20.0% |
| !! | ATTATAAGGATGAAAAATGT+AGG | - | chr5_2:20207947-20207966 | Msa0762270:intron | 20.0% |
| !! | TGAATATTTACAATAAACTG+TGG | - | chr5_2:20208061-20208080 | Msa0762270:intron | 20.0% |
| !! | AGTTTATGCTTTATAAGATT+AGG | - | chr5_2:20208197-20208216 | Msa0762270:intron | 20.0% |
| !! | ATATCTAGTTGTTGAAAATA+CGG | - | chr5_2:20208339-20208358 | Msa0762270:intron | 20.0% |
| !!! | TACAACTTGTTTAAATACTA+CGG | + | chr5_2:20208390-20208409 | None:intergenic | 20.0% |
| !! | AATATCGAATAACAAATGTA+CGG | + | chr5_2:20208574-20208593 | None:intergenic | 20.0% |
| !! | AGAAAATAATCAAATGAAGT+CGG | + | chr5_2:20208774-20208793 | None:intergenic | 20.0% |
| ! | TTAAACTTATCTTTCCAATC+AGG | + | chr5_2:20203041-20203060 | None:intergenic | 25.0% |
| !! | TTTGTAGTTCTTTTCATAGT+TGG | - | chr5_2:20203155-20203174 | Msa0762270:intron | 25.0% |
| ! | TCATATATACTTTAGTGTCA+CGG | - | chr5_2:20203304-20203323 | Msa0762270:intron | 25.0% |
| ! | AATCAAATTGCAAGAAAATG+TGG | + | chr5_2:20203340-20203359 | None:intergenic | 25.0% |
| !! | CATTTTCTTGCAATTTGATT+CGG | - | chr5_2:20203340-20203359 | Msa0762270:intron | 25.0% |
| !!! | TTTTAGTGTTGTTTGCTTTT+TGG | - | chr5_2:20203424-20203443 | Msa0762270:intron | 25.0% |
| !! | TTAAGGTAGTTTGCATTATT+TGG | - | chr5_2:20203835-20203854 | Msa0762270:intron | 25.0% |
| !! | CGTATTTATATGGATGATTT+TGG | + | chr5_2:20203927-20203946 | None:intergenic | 25.0% |
| ! | AATTCATTGTTCTTAAATGG+CGG | + | chr5_2:20204053-20204072 | None:intergenic | 25.0% |
| ! | ACAATGAATTGATTATGAAG+AGG | - | chr5_2:20204063-20204082 | Msa0762270:intron | 25.0% |
| !! | TGGATATTGGATATTGTTTT+CGG | - | chr5_2:20204109-20204128 | Msa0762270:CDS | 25.0% |
| ! | AATCATATTAGTCCTCTTTA+TGG | - | chr5_2:20204225-20204244 | Msa0762270:intron | 25.0% |
| ! | ACTATATCTCTATAATGTAG+CGG | - | chr5_2:20204459-20204478 | Msa0762270:intron | 25.0% |
| ! | TTAATACATTTGTTCGTTCT+TGG | - | chr5_2:20204626-20204645 | Msa0762270:CDS | 25.0% |
| ! | TTAAATACCAGATTGACATT+AGG | + | chr5_2:20204953-20204972 | None:intergenic | 25.0% |
| !! | ATCTTTTACCATAAAGCTTT+AGG | + | chr5_2:20205176-20205195 | None:intergenic | 25.0% |
| !! | TTGAAGTATATATTTTTCCG+AGG | + | chr5_2:20205231-20205250 | None:intergenic | 25.0% |
| !! | TTTTTAACAGCTGAAACAAA+CGG | + | chr5_2:20205391-20205410 | None:intergenic | 25.0% |
| ! | GTAATCACACTTGAAATATA+TGG | - | chr5_2:20205629-20205648 | Msa0762270:intron | 25.0% |
| !!! | CGAATAAATTGTTGTTTAGA+AGG | + | chr5_2:20205740-20205759 | None:intergenic | 25.0% |
| ! | AGACAAATATTACTTCTGTA+TGG | + | chr5_2:20205981-20206000 | None:intergenic | 25.0% |
| !! | TCTTAAGGAAATCATCTTTT+TGG | - | chr5_2:20206224-20206243 | Msa0762270:intron | 25.0% |
| !! | AATGTTTAACTTACATACCT+CGG | + | chr5_2:20206682-20206701 | None:intergenic | 25.0% |
| ! | AAGTACCTTATAGAATCAAA+GGG | - | chr5_2:20206811-20206830 | Msa0762270:intron | 25.0% |
| ! | CTTCGGAAAAAAAAAAATCA+GGG | + | chr5_2:20206928-20206947 | None:intergenic | 25.0% |
| ! | TCTTCGGAAAAAAAAAAATC+AGG | + | chr5_2:20206929-20206948 | None:intergenic | 25.0% |
| ! | ATGTCTGATGATATATTCTT+CGG | + | chr5_2:20206945-20206964 | None:intergenic | 25.0% |
| ! | GTGCTTACAATAATGTAAAT+GGG | - | chr5_2:20207107-20207126 | Msa0762270:intron | 25.0% |
| ! | GGTTGAAACTTTATGAAAAT+TGG | - | chr5_2:20207128-20207147 | Msa0762270:intron | 25.0% |
| ! | GTTTGATACTTCATCTATAT+AGG | + | chr5_2:20207173-20207192 | None:intergenic | 25.0% |
| ! | ATTAACATAAAAACAAGGGA+TGG | - | chr5_2:20207211-20207230 | Msa0762270:intron | 25.0% |
| !!! | GATGGTGATTTTAATATTCT+TGG | - | chr5_2:20207229-20207248 | Msa0762270:intron | 25.0% |
| !! | CTTTTAACAGAAGTAAAACT+AGG | + | chr5_2:20207356-20207375 | None:intergenic | 25.0% |
| ! | TCAGACGAAAAATTATTTCA+AGG | - | chr5_2:20207463-20207482 | Msa0762270:intron | 25.0% |
| !! | TAGATGCTATTTAACAACTT+TGG | + | chr5_2:20207734-20207753 | None:intergenic | 25.0% |
| ! | TTATACTTCACCCAATTATA+AGG | - | chr5_2:20207933-20207952 | Msa0762270:intron | 25.0% |
| ! | TTACAATAAACTGTGGTAAA+TGG | - | chr5_2:20208068-20208087 | Msa0762270:intron | 25.0% |
| !! | TCTAAAGCAGAAATCTTATA+TGG | + | chr5_2:20208173-20208192 | None:intergenic | 25.0% |
| ! | TTATGCTTTATAAGATTAGG+AGG | - | chr5_2:20208200-20208219 | Msa0762270:intron | 25.0% |
| ! | TATGCTTTATAAGATTAGGA+GGG | - | chr5_2:20208201-20208220 | Msa0762270:intron | 25.0% |
| !!! | TTGTGATTATTTGTTTTGTG+TGG | - | chr5_2:20208251-20208270 | Msa0762270:intron | 25.0% |
| !! | GTATTTTCAACAACTAGATA+TGG | + | chr5_2:20208340-20208359 | None:intergenic | 25.0% |
| !!! | TGTTATTCGATATTGATTCT+CGG | - | chr5_2:20208580-20208599 | Msa0762270:CDS | 25.0% |
| ! | GAAAATAATCAAATGAAGTC+GGG | + | chr5_2:20208773-20208792 | None:intergenic | 25.0% |
| TGTTAGAGACTTTGAATGAA+TGG | + | chr5_2:20202965-20202984 | None:intergenic | 30.0% | |
| TTGATTACAATGATCCTGAT+TGG | - | chr5_2:20203024-20203043 | Msa0762270:CDS | 30.0% | |
| !!! | TTAAAGAAGATTTTGAGGCA+CGG | - | chr5_2:20203057-20203076 | Msa0762270:intron | 30.0% |
| GGAAAATATCAGTAACATGA+GGG | + | chr5_2:20203091-20203110 | None:intergenic | 30.0% | |
| !!! | CTACTTTTTGTCTCAAAATG+AGG | - | chr5_2:20203132-20203151 | Msa0762270:intron | 30.0% |
| GTAAAGAAACGTTCAAACTA+CGG | + | chr5_2:20203385-20203404 | None:intergenic | 30.0% | |
| !! | TCTAGTTAGGGTGTTTTATA+TGG | - | chr5_2:20203500-20203519 | Msa0762270:intron | 30.0% |
| !! | TTTTGTTTATGTGTGATGAC+AGG | - | chr5_2:20203727-20203746 | Msa0762270:intron | 30.0% |
| TTTGTTTATGTGTGATGACA+GGG | - | chr5_2:20203728-20203747 | Msa0762270:intron | 30.0% | |
| CTATAACTAGAGACTTTCAT+GGG | - | chr5_2:20203754-20203773 | Msa0762270:intron | 30.0% | |
| TTTCATGGGAATTATGATTC+TGG | - | chr5_2:20203768-20203787 | Msa0762270:intron | 30.0% | |
| TCCATATAAATACGCTATTG+TGG | - | chr5_2:20203933-20203952 | Msa0762270:intron | 30.0% | |
| ACCACAATAGCGTATTTATA+TGG | + | chr5_2:20203937-20203956 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr5_2:20203979-20203998 | Msa0762270:intron | 30.0% | |
| ! | ATATTGGATATTGTTTTCGG+TGG | - | chr5_2:20204112-20204131 | Msa0762270:CDS | 30.0% |
| AGCTATAAACTTTGTGTTTG+AGG | - | chr5_2:20204270-20204289 | Msa0762270:intron | 30.0% | |
| TGATTATTCATTACCCGAAA+CGG | + | chr5_2:20204335-20204354 | None:intergenic | 30.0% | |
| TACAAAATGTTGTCAAACAG+TGG | - | chr5_2:20204524-20204543 | Msa0762270:intron | 30.0% | |
| ATGTAGTCAATCATAGATAG+CGG | + | chr5_2:20204603-20204622 | None:intergenic | 30.0% | |
| ! | TTTTTCACTTATCCTTGCAT+TGG | - | chr5_2:20204696-20204715 | Msa0762270:intron | 30.0% |
| ATCAAAATGAAGTGAAATGC+TGG | - | chr5_2:20204738-20204757 | Msa0762270:intron | 30.0% | |
| ! | TGATTTTCCTAATGTCAATC+TGG | - | chr5_2:20204943-20204962 | Msa0762270:intron | 30.0% |
| !! | ATTGCAAGCAACTTGTTTTT+CGG | - | chr5_2:20204995-20205014 | Msa0762270:CDS | 30.0% |
| ATTTAGAGATGAACATTCTC+CGG | - | chr5_2:20205036-20205055 | Msa0762270:CDS | 30.0% | |
| !! | CGATCAAATTGTTTCTGATA+TGG | - | chr5_2:20205333-20205352 | Msa0762270:intron | 30.0% |
| ! | TTTTAACAGCTGAAACAAAC+GGG | + | chr5_2:20205390-20205409 | None:intergenic | 30.0% |
| GACGTTAACGAATATATTTG+AGG | + | chr5_2:20205537-20205556 | None:intergenic | 30.0% | |
| ! | TAACGTCATGTACGTTTTAT+TGG | - | chr5_2:20205550-20205569 | Msa0762270:CDS | 30.0% |
| ! | TTTTTCTGACAAAGAGTTGA+TGG | - | chr5_2:20205691-20205710 | Msa0762270:intron | 30.0% |
| GATTTCATTTACAGTTGTCA+AGG | - | chr5_2:20205823-20205842 | Msa0762270:intron | 30.0% | |
| TAGTGAAATTGTGGATAGTT+TGG | - | chr5_2:20205914-20205933 | Msa0762270:intron | 30.0% | |
| ! | GTATATTGTTGATTGATTGC+AGG | - | chr5_2:20206060-20206079 | Msa0762270:intron | 30.0% |
| AGACAATGATATCCTATTGA+TGG | - | chr5_2:20206381-20206400 | Msa0762270:CDS | 30.0% | |
| !! | CAAAAGTTTTGTCCATCAAT+AGG | + | chr5_2:20206396-20206415 | None:intergenic | 30.0% |
| !! | CTATTGATGGACAAAACTTT+TGG | - | chr5_2:20206394-20206413 | Msa0762270:CDS | 30.0% |
| AATCGGGATTGTGAAATTAA+TGG | - | chr5_2:20206587-20206606 | Msa0762270:intron | 30.0% | |
| ATCGGGATTGTGAAATTAAT+GGG | - | chr5_2:20206588-20206607 | Msa0762270:intron | 30.0% | |
| ! | ATGTTTAACTTACATACCTC+GGG | + | chr5_2:20206681-20206700 | None:intergenic | 30.0% |
| AAGGTTCCTTTCAATTTACA+TGG | - | chr5_2:20206763-20206782 | Msa0762270:CDS | 30.0% | |
| ! | TTGATTCTATAAGGTACTTG+AGG | + | chr5_2:20206810-20206829 | None:intergenic | 30.0% |
| CAAGTACCTTATAGAATCAA+AGG | - | chr5_2:20206810-20206829 | Msa0762270:intron | 30.0% | |
| ! | TTTGAAGTAAATTCTGCATC+AGG | + | chr5_2:20206998-20207017 | None:intergenic | 30.0% |
| AATAATAGCAAACCTCTTGT+TGG | + | chr5_2:20207079-20207098 | None:intergenic | 30.0% | |
| !! | GGTTTGCTATTATTTGCTTA+TGG | - | chr5_2:20207085-20207104 | Msa0762270:intron | 30.0% |
| GGTGCTTACAATAATGTAAA+TGG | - | chr5_2:20207106-20207125 | Msa0762270:intron | 30.0% | |
| TAATTCTAGACATCTTACAG+TGG | + | chr5_2:20207195-20207214 | None:intergenic | 30.0% | |
| TTGATCCAACATACATGATT+CGG | - | chr5_2:20207516-20207535 | Msa0762270:intron | 30.0% | |
| ! | GGAATTTTATGTACTGTTCT+TGG | - | chr5_2:20207563-20207582 | Msa0762270:intron | 30.0% |
| ! | ATTGGTTCTCAATTCTCATA+TGG | - | chr5_2:20207659-20207678 | Msa0762270:intron | 30.0% |
| ! | TGCTATTTAACAACTTTGGT+CGG | + | chr5_2:20207730-20207749 | None:intergenic | 30.0% |
| TTGTACTAAATAGCGTAACA+TGG | + | chr5_2:20207791-20207810 | None:intergenic | 30.0% | |
| !! | AATACAACAGTTCTAAAACG+CGG | + | chr5_2:20207829-20207848 | None:intergenic | 30.0% |
| ! | GATATACTGTTTTCAGAGAA+AGG | - | chr5_2:20207999-20208018 | Msa0762270:intron | 30.0% |
| AGACATAGCATGATTTACAA+GGG | + | chr5_2:20208123-20208142 | None:intergenic | 30.0% | |
| TAGACATAGCATGATTTACA+AGG | + | chr5_2:20208124-20208143 | None:intergenic | 30.0% | |
| AAAGCAGAAATCTTATATGG+AGG | + | chr5_2:20208170-20208189 | None:intergenic | 30.0% | |
| !! | AGAAAAAGCATTAAAGACAG+TGG | + | chr5_2:20208228-20208247 | None:intergenic | 30.0% |
| ! | AATAGAAACCTTGATTCGAA+AGG | + | chr5_2:20208539-20208558 | None:intergenic | 30.0% |
| ! | ATGCACATGATGATGATGAA+GGG | + | chr5_2:20202892-20202911 | None:intergenic | 35.0% |
| TGAATGAATGGAAAAGACGA+TGG | + | chr5_2:20202953-20202972 | None:intergenic | 35.0% | |
| GGGAAAATATCAGTAACATG+AGG | + | chr5_2:20203092-20203111 | None:intergenic | 35.0% | |
| !! | TTTCTTGCAATTTGATTCGG+TGG | - | chr5_2:20203343-20203362 | Msa0762270:intron | 35.0% |
| !!! | TGTTTGCTTTTTGGTTTCAC+TGG | - | chr5_2:20203433-20203452 | Msa0762270:intron | 35.0% |
| CCATGAAAGTCTCTAGTTAT+AGG | + | chr5_2:20203756-20203775 | None:intergenic | 35.0% | |
| CCTATAACTAGAGACTTTCA+TGG | - | chr5_2:20203753-20203772 | Msa0762270:intron | 35.0% | |
| ATTATGATTCTGGTGAGGAA+TGG | - | chr5_2:20203778-20203797 | Msa0762270:intron | 35.0% | |
| ! | TAATGACAGAGTGCTTCTTA+AGG | - | chr5_2:20203818-20203837 | Msa0762270:intron | 35.0% |
| TTGATTCAATGTTGTCGATG+CGG | - | chr5_2:20203887-20203906 | Msa0762270:intron | 35.0% | |
| AAATACGCTATTGTGGTATG+TGG | - | chr5_2:20203940-20203959 | Msa0762270:intron | 35.0% | |
| GCTGTTGTTAATGTGGATAT+TGG | - | chr5_2:20204096-20204115 | Msa0762270:CDS | 35.0% | |
| ! | GCACAAAGTTTTCCATAAAG+AGG | + | chr5_2:20204240-20204259 | None:intergenic | 35.0% |
| CTCAAATTGTTGCCTTAAGT+TGG | - | chr5_2:20204355-20204374 | Msa0762270:intron | 35.0% | |
| ! | CTGGTTCATTGGTTGAAAAT+TGG | - | chr5_2:20204388-20204407 | Msa0762270:intron | 35.0% |
| TTGTACTAAATAGCGTATCG+CGG | + | chr5_2:20204509-20204528 | None:intergenic | 35.0% | |
| GACATTATAGCACTATTGTG+AGG | - | chr5_2:20204552-20204571 | Msa0762270:intron | 35.0% | |
| !! | TCATAGATAGCGGAAAATAG+CGG | + | chr5_2:20204593-20204612 | None:intergenic | 35.0% |
| ACAAAAGACATTCCAATGCA+AGG | + | chr5_2:20204711-20204730 | None:intergenic | 35.0% | |
| !! | AAGCAACTTGTTTTTCGGAA+AGG | - | chr5_2:20205000-20205019 | Msa0762270:CDS | 35.0% |
| !! | AGCAACTTGTTTTTCGGAAA+GGG | - | chr5_2:20205001-20205020 | Msa0762270:CDS | 35.0% |
| !! | ATGACTAGCCTAAAGCTTTA+TGG | - | chr5_2:20205165-20205184 | Msa0762270:intron | 35.0% |
| CTTCAAACCAGAAGAAGTAA+AGG | - | chr5_2:20205245-20205264 | Msa0762270:CDS | 35.0% | |
| TCTTAACGATGTCATTAGAC+AGG | - | chr5_2:20205302-20205321 | Msa0762270:CDS | 35.0% | |
| TGAGGTCTGCTAATAACTAA+GGG | + | chr5_2:20205519-20205538 | None:intergenic | 35.0% | |
| TTGAGGTCTGCTAATAACTA+AGG | + | chr5_2:20205520-20205539 | None:intergenic | 35.0% | |
| TATGGTGTAACTGAGATTGT+TGG | - | chr5_2:20205647-20205666 | Msa0762270:intron | 35.0% | |
| ! | GAGATTGTTGGTATTCCTTT+TGG | - | chr5_2:20205659-20205678 | Msa0762270:intron | 35.0% |
| !! | CAAAGAGTTGATGGAAATAC+CGG | - | chr5_2:20205700-20205719 | Msa0762270:intron | 35.0% |
| GAAGGGAAATATGAGATTAC+CGG | + | chr5_2:20205722-20205741 | None:intergenic | 35.0% | |
| GTTCAAAACATTCATCTCTC+AGG | - | chr5_2:20205852-20205871 | Msa0762270:intron | 35.0% | |
| TGAAATTGTGGATAGTTTGG+AGG | - | chr5_2:20205917-20205936 | Msa0762270:intron | 35.0% | |
| TTGATTGATTGCAGGAAAGA+GGG | - | chr5_2:20206068-20206087 | Msa0762270:intron | 35.0% | |
| AGTTCTTATCTGTGGTTCAA+AGG | - | chr5_2:20206744-20206763 | Msa0762270:CDS | 35.0% | |
| TGAGGTCCATGTAAATTGAA+AGG | + | chr5_2:20206772-20206791 | None:intergenic | 35.0% | |
| TTCAATTTACATGGACCTCA+TGG | - | chr5_2:20206772-20206791 | Msa0762270:CDS | 35.0% | |
| CTGATCCCTTTGATTCTATA+AGG | + | chr5_2:20206819-20206838 | None:intergenic | 35.0% | |
| AACGCTAAACTTGGAGATAT+CGG | - | chr5_2:20207044-20207063 | Msa0762270:intron | 35.0% | |
| TGATCCAACATACATGATTC+GGG | - | chr5_2:20207517-20207536 | Msa0762270:intron | 35.0% | |
| TACTGTTCTTGGACAAAATG+CGG | - | chr5_2:20207574-20207593 | Msa0762270:intron | 35.0% | |
| !! | AAAGAGTTGATGTGAACACA+AGG | + | chr5_2:20207696-20207715 | None:intergenic | 35.0% |
| GGGAATTGTATTCTCATTCA+AGG | + | chr5_2:20208280-20208299 | None:intergenic | 35.0% | |
| CATATGGCATTTCCACTTAT+GGG | - | chr5_2:20208313-20208332 | Msa0762270:intron | 35.0% | |
| ! | TACAACAAACATTTTGCAGC+CGG | - | chr5_2:20208440-20208459 | Msa0762270:intron | 35.0% |
| GAACACGTGAAATATGATCA+CGG | + | chr5_2:20208491-20208510 | None:intergenic | 35.0% | |
| CTATGTTTCCTTTCGAATCA+AGG | - | chr5_2:20208528-20208547 | Msa0762270:CDS | 35.0% | |
| TTGAGGATGCGATATTACTT+CGG | + | chr5_2:20208696-20208715 | None:intergenic | 35.0% | |
| AGTAATATCGCATCCTCAAT+TGG | - | chr5_2:20208697-20208716 | Msa0762270:CDS | 35.0% | |
| ! | CATGCACATGATGATGATGA+AGG | + | chr5_2:20202893-20202912 | None:intergenic | 40.0% |
| CTTCATCATCATCATGTGCA+TGG | - | chr5_2:20202891-20202910 | Msa0762270:CDS | 40.0% | |
| !!! | GATGGTTGGTTTTGGAGTAA+CGG | + | chr5_2:20202935-20202954 | None:intergenic | 40.0% |
| !!! | GAAAAGACGATGGTTGGTTT+TGG | + | chr5_2:20202943-20202962 | None:intergenic | 40.0% |
| TGAATGGAAAAGACGATGGT+TGG | + | chr5_2:20202949-20202968 | None:intergenic | 40.0% | |
| !! | AACGCATAGAAGAAGCATCA+GGG | + | chr5_2:20203112-20203131 | None:intergenic | 40.0% |
| ATAAAGGAAGATCACAACCG+AGG | + | chr5_2:20203473-20203492 | None:intergenic | 40.0% | |
| TGGGAATTATGATTCTGGTG+AGG | - | chr5_2:20203773-20203792 | Msa0762270:intron | 40.0% | |
| AATGTTGTCGATGCGGAATA+TGG | - | chr5_2:20203894-20203913 | Msa0762270:intron | 40.0% | |
| CCTTCACAAATTTCCTATGG+CGG | - | chr5_2:20203982-20204001 | Msa0762270:intron | 40.0% | |
| !!! | AGAATGGCATGGTGGTTTTT+TGG | + | chr5_2:20204012-20204031 | None:intergenic | 40.0% |
| TTGTTCTTAAATGGCGGTCA+TGG | + | chr5_2:20204047-20204066 | None:intergenic | 40.0% | |
| CTCGATAGCTGTTGTTAATG+TGG | - | chr5_2:20204089-20204108 | Msa0762270:CDS | 40.0% | |
| AGACAGCAGATTCCAACTTA+AGG | + | chr5_2:20204370-20204389 | None:intergenic | 40.0% | |
| !! | TTAAGTTGGAATCTGCTGTC+TGG | - | chr5_2:20204369-20204388 | Msa0762270:intron | 40.0% |
| ATGAAGTGAAATGCTGGACT+TGG | - | chr5_2:20204744-20204763 | Msa0762270:intron | 40.0% | |
| CATTGATCCTGGCTGTAATT+GGG | - | chr5_2:20204900-20204919 | Msa0762270:intron | 40.0% | |
| CTAATGACATCGTTAAGACC+AGG | + | chr5_2:20205300-20205319 | None:intergenic | 40.0% | |
| CAAAACATTCATCTCTCAGG+TGG | - | chr5_2:20205855-20205874 | Msa0762270:intron | 40.0% | |
| ACCTGGAGTTAGTGAAATTG+TGG | - | chr5_2:20205905-20205924 | Msa0762270:intron | 40.0% | |
| TCCACAATTTCACTAACTCC+AGG | + | chr5_2:20205909-20205928 | None:intergenic | 40.0% | |
| GTTGATTGATTGCAGGAAAG+AGG | - | chr5_2:20206067-20206086 | Msa0762270:intron | 40.0% | |
| ATCAACGTGCTCTTTGTGTT+GGG | - | chr5_2:20206091-20206110 | Msa0762270:intron | 40.0% | |
| GTTTCCAGTGCTGTAAAAGA+CGG | - | chr5_2:20206323-20206342 | Msa0762270:intron | 40.0% | |
| CGGATCAAAGTGTGTGTTAT+TGG | - | chr5_2:20206343-20206362 | Msa0762270:CDS | 40.0% | |
| TAGGCACATAGTGCATATCA+CGG | - | chr5_2:20206564-20206583 | Msa0762270:intron | 40.0% | |
| CATAGTGCATATCACGGAAT+CGG | - | chr5_2:20206570-20206589 | Msa0762270:intron | 40.0% | |
| ATAGTGCATATCACGGAATC+GGG | - | chr5_2:20206571-20206590 | Msa0762270:intron | 40.0% | |
| TTGCTATGAATCCACTGCTA+CGG | + | chr5_2:20206614-20206633 | None:intergenic | 40.0% | |
| ACTTACATACCTCGGGAATT+AGG | + | chr5_2:20206674-20206693 | None:intergenic | 40.0% | |
| TACGACAAAGACAGAAAGCT+AGG | + | chr5_2:20206708-20206727 | None:intergenic | 40.0% | |
| CTGATACGAGTTCTTATCTG+TGG | - | chr5_2:20206736-20206755 | Msa0762270:CDS | 40.0% | |
| ACTAATGATACCGATGCTTC+AGG | - | chr5_2:20207020-20207039 | Msa0762270:intron | 40.0% | |
| CTAATGATACCGATGCTTCA+GGG | - | chr5_2:20207021-20207040 | Msa0762270:intron | 40.0% | |
| ACGCTAAACTTGGAGATATC+GGG | - | chr5_2:20207045-20207064 | Msa0762270:intron | 40.0% | |
| AACAATGGGCAAAGATAGAG+AGG | + | chr5_2:20207612-20207631 | None:intergenic | 40.0% | |
| AGTAGCAGTGTTGTCAATTG+TGG | + | chr5_2:20207889-20207908 | None:intergenic | 40.0% | |
| ! | CCATATGCATTTTGTGCTTG+GGG | + | chr5_2:20208300-20208319 | None:intergenic | 40.0% |
| ! | GCCATATGCATTTTGTGCTT+GGG | + | chr5_2:20208301-20208320 | None:intergenic | 40.0% |
| ! | TGCCATATGCATTTTGTGCT+TGG | + | chr5_2:20208302-20208321 | None:intergenic | 40.0% |
| GCATATGGCATTTCCACTTA+TGG | - | chr5_2:20208312-20208331 | Msa0762270:intron | 40.0% | |
| ACTAGATATGGACCCATAAG+TGG | + | chr5_2:20208328-20208347 | None:intergenic | 40.0% | |
| !! | TCGATATTGATTCTCGGCTT+TGG | - | chr5_2:20208586-20208605 | Msa0762270:CDS | 40.0% |
| GGATATAGTGGCATTACAGT+AGG | - | chr5_2:20208635-20208654 | Msa0762270:CDS | 40.0% | |
| TGCGATATTACTTCGGTGAT+TGG | + | chr5_2:20208689-20208708 | None:intergenic | 40.0% | |
| AATATCGCATCCTCAATTGG+TGG | - | chr5_2:20208700-20208719 | Msa0762270:CDS | 40.0% | |
| ! | ATGATGATGATGAAGGGTGG+TGG | + | chr5_2:20202886-20202905 | None:intergenic | 45.0% |
| ! | CACATGATGATGATGAAGGG+TGG | + | chr5_2:20202889-20202908 | None:intergenic | 45.0% |
| !! | GAACGCATAGAAGAAGCATC+AGG | + | chr5_2:20203113-20203132 | None:intergenic | 45.0% |
| !! | CAATTTGATTCGGTGGTGTG+TGG | - | chr5_2:20203350-20203369 | Msa0762270:intron | 45.0% |
| !!! | CTTTTTGGTTTCACTGGCTC+AGG | - | chr5_2:20203439-20203458 | Msa0762270:intron | 45.0% |
| !! | TGGCTCAGGTTTTATGTCCT+CGG | - | chr5_2:20203453-20203472 | Msa0762270:intron | 45.0% |
| GATTCTGGTGAGGAATGGAA+TGG | - | chr5_2:20203783-20203802 | Msa0762270:intron | 45.0% | |
| CCGCCATAGGAAATTTGTGA+AGG | + | chr5_2:20203985-20204004 | None:intergenic | 45.0% | |
| !!! | GTTTTTTGGACAACCGCCAT+AGG | + | chr5_2:20203998-20204017 | None:intergenic | 45.0% |
| !! | TGCCTCACGAAGTGTTTTAG+TGG | - | chr5_2:20204299-20204318 | Msa0762270:intron | 45.0% |
| !!! | CTCACGAAGTGTTTTAGTGG+CGG | - | chr5_2:20204302-20204321 | Msa0762270:intron | 45.0% |
| ! | GAATCTGCTGTCTGGTTCAT+TGG | - | chr5_2:20204377-20204396 | Msa0762270:intron | 45.0% |
| CAGCAGATGTAGGTGATGAA+TGG | + | chr5_2:20204870-20204889 | None:intergenic | 45.0% | |
| CATTCATCACCTACATCTGC+TGG | - | chr5_2:20204868-20204887 | Msa0762270:CDS | 45.0% | |
| ! | GCATTGATCCTGGCTGTAAT+TGG | - | chr5_2:20204899-20204918 | Msa0762270:intron | 45.0% |
| GCTGTAATTGGGTGGAACAA+TGG | - | chr5_2:20204911-20204930 | Msa0762270:intron | 45.0% | |
| ! | TTTTGTAGGGTTCATCGAGC+TGG | - | chr5_2:20205204-20205223 | Msa0762270:CDS | 45.0% |
| ATGGCTGCCTTTACTTCTTC+TGG | + | chr5_2:20205255-20205274 | None:intergenic | 45.0% | |
| ! | AAGGCAGCCATTGTTACTTG+TGG | - | chr5_2:20205264-20205283 | Msa0762270:CDS | 45.0% |
| CAGTCCTCCACAAGTAACAA+TGG | + | chr5_2:20205274-20205293 | None:intergenic | 45.0% | |
| !! | GGTATTCCTTTTGGCTATCG+CGG | - | chr5_2:20205668-20205687 | Msa0762270:intron | 45.0% |
| GAAAAACCGCGATAGCCAAA+AGG | + | chr5_2:20205677-20205696 | None:intergenic | 45.0% | |
| AGCCTATTAGGAGTTTCACG+CGG | - | chr5_2:20205879-20205898 | Msa0762270:intron | 45.0% | |
| GATCAACGTGCTCTTTGTGT+TGG | - | chr5_2:20206090-20206109 | Msa0762270:intron | 45.0% | |
| CTCTTTGTGTTGGGTGGAAA+TGG | - | chr5_2:20206100-20206119 | Msa0762270:intron | 45.0% | |
| TGCAAATGCAATTCACGACG+AGG | - | chr5_2:20206135-20206154 | Msa0762270:intron | 45.0% | |
| ! | TGATCCGTCTTTTACAGCAC+TGG | + | chr5_2:20206330-20206349 | None:intergenic | 45.0% |
| !!! | AACTTTTGGCTTTGACACCG+CGG | - | chr5_2:20206408-20206427 | Msa0762270:CDS | 45.0% |
| TCTTTGTGCTTCTTCAACCG+CGG | + | chr5_2:20206428-20206447 | None:intergenic | 45.0% | |
| ! | AAATTAATGGGCCGTAGCAG+TGG | - | chr5_2:20206600-20206619 | Msa0762270:intron | 45.0% |
| ATGCAATCTTCCTTAGCCAG+TGG | - | chr5_2:20206633-20206652 | Msa0762270:intron | 45.0% | |
| ! | ATCAATCTGTCCACTGGCTA+AGG | + | chr5_2:20206646-20206665 | None:intergenic | 45.0% |
| GCATACATCAATCTGTCCAC+TGG | + | chr5_2:20206652-20206671 | None:intergenic | 45.0% | |
| TGATGTATGCCTAATTCCCG+AGG | - | chr5_2:20206662-20206681 | Msa0762270:intron | 45.0% | |
| AGGTGACTCAAAACTCCATG+AGG | + | chr5_2:20206790-20206809 | None:intergenic | 45.0% | |
| TTTAGCGTTCCCTGAAGCAT+CGG | + | chr5_2:20207033-20207052 | None:intergenic | 45.0% | |
| CGCTAAACTTGGAGATATCG+GGG | - | chr5_2:20207046-20207065 | Msa0762270:intron | 45.0% | |
| CGGGGTTTATATCCAACAAG+AGG | - | chr5_2:20207064-20207083 | Msa0762270:intron | 45.0% | |
| TGTCGAGCAAATGCATCAGA+TGG | - | chr5_2:20207542-20207561 | Msa0762270:intron | 45.0% | |
| TCAATTGTGGATCGCGGAAT+AGG | + | chr5_2:20207876-20207895 | None:intergenic | 45.0% | |
| GTGTTGTCAATTGTGGATCG+CGG | + | chr5_2:20207882-20207901 | None:intergenic | 45.0% | |
| AACTGTGGTAAATGGAACGC+TGG | - | chr5_2:20208076-20208095 | Msa0762270:intron | 45.0% | |
| ATGGAACGCTGGAGTACAAT+AGG | - | chr5_2:20208087-20208106 | Msa0762270:intron | 45.0% | |
| CCCCAAGCACAAAATGCATA+TGG | - | chr5_2:20208297-20208316 | Msa0762270:intron | 45.0% | |
| ATCAGTTATGCCTACGTCTC+CGG | + | chr5_2:20208462-20208481 | None:intergenic | 45.0% | |
| ! | ATTCTCGGCTTTGGTATTGC+AGG | - | chr5_2:20208595-20208614 | Msa0762270:CDS | 45.0% |
| GCTTTGGTATTGCAGGTTCA+TGG | - | chr5_2:20208602-20208621 | Msa0762270:CDS | 45.0% | |
| ! | GGTGCATTTGCTGGATATAG+TGG | - | chr5_2:20208623-20208642 | Msa0762270:CDS | 45.0% |
| CTGTTTGGATCCACCAATTG+AGG | + | chr5_2:20208713-20208732 | None:intergenic | 45.0% | |
| TGGATCCAAACAGTCGAATG+TGG | - | chr5_2:20208720-20208739 | Msa0762270:CDS | 45.0% | |
| CATCGATGCTTAACTTCGAC+CGG | - | chr5_2:20208743-20208762 | Msa0762270:CDS | 45.0% | |
| !! | TCAAATGAAGTCGGGTTGAC+CGG | + | chr5_2:20208765-20208784 | None:intergenic | 45.0% |
| !! | TATTAAATAGAAAATAATAT+CGG | + | chr5_2:20206509-20206528 | None:intergenic | 5.0% |
| GTTGTCGATGCGGAATATGG+TGG | - | chr5_2:20203897-20203916 | Msa0762270:intron | 50.0% | |
| ! | TCGATGCGGAATATGGTGGA+AGG | - | chr5_2:20203901-20203920 | Msa0762270:intron | 50.0% |
| TGAAGGAATTCCCGCCATAG+TGG | + | chr5_2:20203968-20203987 | None:intergenic | 50.0% | |
| CGCCACTAAAACACTTCGTG+AGG | + | chr5_2:20204304-20204323 | None:intergenic | 50.0% | |
| TGATCCTGGCTGTAATTGGG+TGG | - | chr5_2:20204903-20204922 | Msa0762270:intron | 50.0% | |
| TGTTCCACCCAATTACAGCC+AGG | + | chr5_2:20204910-20204929 | None:intergenic | 50.0% | |
| ! | GCAGCCATTGTTACTTGTGG+AGG | - | chr5_2:20205267-20205286 | Msa0762270:CDS | 50.0% |
| CTCCGCGTGAAACTCCTAAT+AGG | + | chr5_2:20205884-20205903 | None:intergenic | 50.0% | |
| CTATTAGGAGTTTCACGCGG+AGG | - | chr5_2:20205882-20205901 | Msa0762270:intron | 50.0% | |
| AACGTGCTCTTTGTGTTGGG+TGG | - | chr5_2:20206094-20206113 | Msa0762270:intron | 50.0% | |
| GGTGGAAATGGTACACATGC+TGG | - | chr5_2:20206112-20206131 | Msa0762270:intron | 50.0% | |
| ! | GGGATCAGCTGTAGTTTGTG+TGG | - | chr5_2:20206831-20206850 | Msa0762270:intron | 50.0% |
| ! | AGCTGTAGTTTGTGTGGCAG+AGG | - | chr5_2:20206837-20206856 | Msa0762270:intron | 50.0% |
| ! | GCTGTAGTTTGTGTGGCAGA+GGG | - | chr5_2:20206838-20206857 | Msa0762270:intron | 50.0% |
| GCTTCAGGGAACGCTAAACT+TGG | - | chr5_2:20207035-20207054 | Msa0762270:intron | 50.0% | |
| CACGCCCGAATCATGTATGT+TGG | + | chr5_2:20207524-20207543 | None:intergenic | 50.0% | |
| CAGGTTCATGGTGCATTTGC+TGG | - | chr5_2:20208614-20208633 | Msa0762270:CDS | 50.0% | |
| CGATGCCACATTCGACTGTT+TGG | + | chr5_2:20208728-20208747 | None:intergenic | 50.0% | |
| ! | AAGGGTGGTGGTGAGGTTAG+GGG | + | chr5_2:20202874-20202893 | None:intergenic | 55.0% |
| ! | GAAGGGTGGTGGTGAGGTTA+GGG | + | chr5_2:20202875-20202894 | None:intergenic | 55.0% |
| ! | TGAAGGGTGGTGGTGAGGTT+AGG | + | chr5_2:20202876-20202895 | None:intergenic | 55.0% |
| ! | GATGATGAAGGGTGGTGGTG+AGG | + | chr5_2:20202881-20202900 | None:intergenic | 55.0% |
| TGTGGTATGTGGCGCCACTA+TGG | - | chr5_2:20203951-20203970 | Msa0762270:intron | 55.0% | |
| ACCACCATGCCATTCTGCCA+TGG | - | chr5_2:20204016-20204035 | Msa0762270:intron | 55.0% | |
| ACCATGCCATTCTGCCATGG+CGG | - | chr5_2:20204019-20204038 | Msa0762270:intron | 55.0% | |
| GTGGCGGTTCATAGCCGTTT+CGG | - | chr5_2:20204318-20204337 | Msa0762270:intron | 55.0% | |
| TGGCGGTTCATAGCCGTTTC+GGG | - | chr5_2:20204319-20204338 | Msa0762270:intron | 55.0% | |
| GCGTATCGCGGAAAGAATCG+TGG | + | chr5_2:20204497-20204516 | None:intergenic | 55.0% | |
| ACTTGTGGAGGACTGTGTCC+TGG | - | chr5_2:20205279-20205298 | Msa0762270:CDS | 55.0% | |
| CTCTCAGGTGGCAGCCTATT+AGG | - | chr5_2:20205867-20205886 | Msa0762270:intron | 55.0% | |
| ! | CATTTTGCAGCCGGAGACGT+AGG | - | chr5_2:20208449-20208468 | Msa0762270:intron | 55.0% |
| GGTATGTGGCGCCACTATGG+CGG | - | chr5_2:20203954-20203973 | Msa0762270:intron | 60.0% | |
| GTATGTGGCGCCACTATGGC+GGG | - | chr5_2:20203955-20203974 | Msa0762270:intron | 60.0% | |
| GCCATGGCAGAATGGCATGG+TGG | + | chr5_2:20204020-20204039 | None:intergenic | 60.0% | |
| !! | ATGGTGCCGCCATGGCAGAA+TGG | + | chr5_2:20204028-20204047 | None:intergenic | 60.0% |
| CACTGAGCGCCAGCAGATGT+AGG | + | chr5_2:20204880-20204899 | None:intergenic | 60.0% | |
| ! | GGCGCTCAGTGCATTGATCC+TGG | - | chr5_2:20204889-20204908 | Msa0762270:intron | 60.0% |
| GGGTTCATCGAGCTGGACCT+CGG | - | chr5_2:20205211-20205230 | Msa0762270:CDS | 60.0% | |
| GTTTGTGTGGCAGAGGGAGC+AGG | - | chr5_2:20206844-20206863 | Msa0762270:intron | 60.0% | |
| GCCGCCATGGCAGAATGGCA+TGG | + | chr5_2:20204023-20204042 | None:intergenic | 65.0% | |
| GGAGTTTCACGCGGAGGACC+TGG | - | chr5_2:20205888-20205907 | Msa0762270:intron | 65.0% | |
| TGTGGCAGAGGGAGCAGGAC+AGG | - | chr5_2:20206849-20206868 | Msa0762270:intron | 65.0% | |
| !! | TGGCGGTCATGGTGCCGCCA+TGG | + | chr5_2:20204036-20204055 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 20202852 | 20208812 | 20202852 | ID=Msa0762270;Name=Msa0762270 |
| chr5_2 | mRNA | 20202852 | 20208812 | 20202852 | ID=Msa0762270-mRNA-1;Parent=Msa0762270;Name=Msa0762270-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0.58|0.46|1|1|1|13|28|530 |
| chr5_2 | exon | 20202852 | 20203047 | 20202852 | ID=Msa0762270-mRNA-1:exon:8575;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20204069 | 20204197 | 20204069 | ID=Msa0762270-mRNA-1:exon:8574;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20204579 | 20204659 | 20204579 | ID=Msa0762270-mRNA-1:exon:8573;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20204794 | 20204898 | 20204794 | ID=Msa0762270-mRNA-1:exon:8572;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20204981 | 20205097 | 20204981 | ID=Msa0762270-mRNA-1:exon:8571;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20205193 | 20205333 | 20205193 | ID=Msa0762270-mRNA-1:exon:8570;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20205508 | 20205582 | 20205508 | ID=Msa0762270-mRNA-1:exon:8569;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20205726 | 20205827 | 20205726 | ID=Msa0762270-mRNA-1:exon:8568;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20205943 | 20206038 | 20205943 | ID=Msa0762270-mRNA-1:exon:8567;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20206341 | 20206452 | 20206341 | ID=Msa0762270-mRNA-1:exon:8566;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20206732 | 20206805 | 20206732 | ID=Msa0762270-mRNA-1:exon:8565;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20207825 | 20207915 | 20207825 | ID=Msa0762270-mRNA-1:exon:8564;Parent=Msa0762270-mRNA-1 |
| chr5_2 | exon | 20208511 | 20208812 | 20208511 | ID=Msa0762270-mRNA-1:exon:8563;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20208511 | 20208812 | 20208511 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20207825 | 20207915 | 20207825 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20206732 | 20206805 | 20206732 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20206341 | 20206452 | 20206341 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20205943 | 20206038 | 20205943 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20205726 | 20205827 | 20205726 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20205508 | 20205582 | 20205508 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20205193 | 20205333 | 20205193 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20204981 | 20205097 | 20204981 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20204794 | 20204898 | 20204794 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20204579 | 20204659 | 20204579 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20204069 | 20204197 | 20204069 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | CDS | 20202880 | 20203047 | 20202880 | ID=Msa0762270-mRNA-1:cds;Parent=Msa0762270-mRNA-1 |
| chr5_2 | three_prime_UTR | 20202852 | 20202879 | 20202852 | ID=Msa0762270-mRNA-1:three_prime_utr;Parent=Msa0762270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
