AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847880 MtrunA17_Chr5g0412481 96.107 411 8 1 6 416 131 533 0.0 810
Msa0847880 MtrunA17_Chr8g0367681 87.105 411 45 1 6 416 127 529 0.0 746
Msa0847880 MtrunA17_Chr1g0196891 52.713 387 167 5 36 416 144 520 1.15e-133 394
Msa0847880 MtrunA17_Chr6g0487421 51.421 387 172 5 36 416 74 450 5.25e-133 391
Msa0847880 MtrunA17_Chr3g0140611 51.421 387 172 5 36 416 78 454 1.94e-132 390
Msa0847880 MtrunA17_Chr8g0389631 50.773 388 174 5 36 416 77 454 2.13e-131 386
Msa0847880 MtrunA17_Chr2g0330871 50.646 387 175 4 36 416 77 453 3.65e-128 377
Msa0847880 MtrunA17_Chr4g0076591 41.127 355 195 3 68 416 92 438 1.07e-93 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847880 AT2G22480.1 83.698 411 59 1 6 416 135 537 0.0 719
Msa0847880 AT5G56630.1 51.948 385 171 4 36 416 77 451 4.12e-136 399
Msa0847880 AT4G26270.1 51.295 386 173 4 36 416 77 452 3.35e-134 394
Msa0847880 AT4G32840.1 51.823 384 172 5 36 416 78 451 5.60e-133 390
Msa0847880 AT4G29220.1 51.421 387 171 5 36 416 78 453 1.06e-131 387
Msa0847880 AT5G61580.1 50.646 387 175 5 36 416 128 504 1.85e-130 386
Msa0847880 AT5G61580.2 51.157 389 169 7 36 416 128 503 1.57e-129 384
Msa0847880 AT5G47810.1 46.015 389 189 6 36 415 62 438 1.64e-115 345

Find 102 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCTGCCTTTACTTCTTC+TGG 0.234836 5_4:-31933395 None:intergenic
CTCTCAGGTGGCAGCCTATT+AGG 0.270534 5_4:+31934009 Msa0847880:CDS
GAGATTGTTGGTATTCCTTT+TGG 0.274193 5_4:+31933801 Msa0847880:CDS
ACTTACATACCTCGGGAATT+AGG 0.276615 5_4:-31934811 None:intergenic
AATCGGGATTGTGAAATTAA+TGG 0.277060 5_4:+31934727 Msa0847880:CDS
TAGTGAAATTGTGGATAGTT+TGG 0.287015 5_4:+31934056 Msa0847880:CDS
GCTTTGGTATTGCAGGTTCA+TGG 0.290416 5_4:+31936742 Msa0847880:intron
CTGATCCCTTTGATTCTATA+AGG 0.291613 5_4:-31934956 None:intergenic
CTATTGATGGACAAAACTTT+TGG 0.291628 5_4:+31934534 Msa0847880:CDS
CGGATCAAAGTGTGTGTTAT+AGG 0.297464 5_4:+31934483 Msa0847880:CDS
ACTAATGATACCGATGCTTC+AGG 0.313533 5_4:+31935166 Msa0847880:CDS
CAGGTTCATGGTGCATTTGC+TGG 0.329427 5_4:+31936754 Msa0847880:intron
CGATGCCACATTCGACTGTT+TGG 0.331058 5_4:-31936865 None:intergenic
TGCGATATTACTTCGGTGAT+TGG 0.351808 5_4:-31936826 None:intergenic
GCATTGATCCTGGCTGCAAT+TGG 0.361228 5_4:+31933041 Msa0847880:CDS
GTAATCACACTTGAAATATA+TGG 0.362471 5_4:+31933771 Msa0847880:CDS
CTCTTTGTGTTGGGTGGAAA+TGG 0.365286 5_4:+31934240 Msa0847880:CDS
AGACAATGATATTCTATTGA+TGG 0.383675 5_4:+31934521 Msa0847880:CDS
AATGCTAAACTTGGAGATAT+CGG 0.387969 5_4:+31935190 Msa0847880:CDS
TTGATCCAACATACATGATT+CGG 0.395697 5_4:+31935658 Msa0847880:CDS
AGTAATATCGCATCCTCAAT+TGG 0.405969 5_4:+31936837 Msa0847880:CDS
CTCCGCGTGAAACTCCTAAT+AGG 0.411712 5_4:-31934023 None:intergenic
ATCAACATGCTCTTTGTGTT+GGG 0.422869 5_4:+31934231 Msa0847880:CDS
AATAATAGCAAACCTCTTGT+TGG 0.426233 5_4:-31935222 None:intergenic
ATGCTAAACTTGGAGATATC+GGG 0.438212 5_4:+31935191 Msa0847880:CDS
ATCGGGATTGTGAAATTAAT+GGG 0.439443 5_4:+31934728 Msa0847880:CDS
CTAATGATACCGATGCTTCA+GGG 0.449759 5_4:+31935167 Msa0847880:CDS
TCAAATGAAGTCGGGTTGAC+CGG 0.450420 5_4:-31936902 None:intergenic
TGATCCAACATACATGATTC+GGG 0.455405 5_4:+31935659 Msa0847880:CDS
CATAGTGCATATCACGGAAT+CGG 0.458640 5_4:+31934710 Msa0847880:CDS
CTGTTTGGATCCACCAATTG+AGG 0.462985 5_4:-31936850 None:intergenic
ACTTGTGGAGGACTGTGTCC+TGG 0.474252 5_4:+31933422 Msa0847880:CDS
GAAAATAATCAAATGAAGTC+GGG 0.476259 5_4:-31936910 None:intergenic
AAGGTTCCTTTCAATTTACA+TGG 0.477045 5_4:+31934903 Msa0847880:CDS
AATAAATTCTGCATATATAG+AGG 0.477305 5_4:+31934590 Msa0847880:CDS
GGAGTTTCACGCGGAGGACC+TGG 0.478048 5_4:+31934030 Msa0847880:CDS
TTCAATTTACATGGACCTCA+TGG 0.479511 5_4:+31934912 Msa0847880:CDS
CAAGTACCTTATAGAATCAA+AGG 0.480379 5_4:+31934950 Msa0847880:CDS
GGTGCATTTGCTGGATATAG+TGG 0.480453 5_4:+31936763 Msa0847880:CDS
GATCAACATGCTCTTTGTGT+TGG 0.483619 5_4:+31934230 Msa0847880:CDS
GTTTGTGTGGCAGAGGGAGC+AGG 0.484756 5_4:+31934984 Msa0847880:CDS
TGTGGCAGAGGGAGCAGGAC+AGG 0.492036 5_4:+31934989 Msa0847880:CDS
GTTGATTGATTGCAGGAAAG+AGG 0.494138 5_4:+31934207 Msa0847880:intron
GTTCAAAACATTCATCTCTC+AGG 0.497136 5_4:+31933994 Msa0847880:CDS
CAAAGAGTTGATGGAAATAC+CGG 0.500018 5_4:+31933842 Msa0847880:CDS
CATTGATCCTGGCTGCAATT+GGG 0.502676 5_4:+31933042 Msa0847880:CDS
TCTTAACGATGTCATTAGAC+AGG 0.502961 5_4:+31933445 Msa0847880:CDS
CTTCAAACCAGAAGAAGTAA+AGG 0.503634 5_4:+31933388 Msa0847880:CDS
ATAGTGCATATCACGGAATC+GGG 0.505089 5_4:+31934711 Msa0847880:CDS
AGAAAATAATCAAATGAAGT+CGG 0.506105 5_4:-31936911 None:intergenic
GGAACCTTTGAACCACAGAT+AGG 0.513260 5_4:-31934888 None:intergenic
ATCAATCTGTCCACTAGCTA+AGG 0.518760 5_4:-31934783 None:intergenic
AGCTGTAGTTTGTGTGGCAG+AGG 0.521624 5_4:+31934977 Msa0847880:CDS
TTGATTCTATAAGGTACTTG+AGG 0.522219 5_4:-31934947 None:intergenic
GCTTCAGGGAATGCTAAACT+TGG 0.524252 5_4:+31935181 Msa0847880:CDS
ACCTGGAGTTAGTGAAATTG+TGG 0.529574 5_4:+31934047 Msa0847880:CDS
TTGATTGATTGCAGGAAAGA+GGG 0.531805 5_4:+31934208 Msa0847880:intron
TGTTCCACCCAATTGCAGCC+AGG 0.538804 5_4:-31933049 None:intergenic
CATTCATCACCTACATCTGC+TGG 0.539977 5_4:+31933010 Msa0847880:CDS
CAGCAGATGTAGGTGATGAA+TGG 0.540591 5_4:-31933009 None:intergenic
AAATTAATGGGCCGTAGCAG+TGG 0.542200 5_4:+31934740 Msa0847880:CDS
GATTTCATTTACAGCTGTCA+AGG 0.542668 5_4:+31933965 Msa0847880:intron
AAGGCAGCCATTGTTACTTG+TGG 0.549028 5_4:+31933407 Msa0847880:CDS
AGGTCCTATCTGTGGTTCAA+AGG 0.549463 5_4:+31934884 Msa0847880:intron
AACATGCTCTTTGTGTTGGG+TGG 0.552403 5_4:+31934234 Msa0847880:CDS
GGTGGAAATGGTACACATGC+TGG 0.556073 5_4:+31934252 Msa0847880:CDS
CACGCCCGAATCATGTATGT+TGG 0.556320 5_4:-31935663 None:intergenic
TGAGGTCCATGTAAATTGAA+AGG 0.559778 5_4:-31934909 None:intergenic
GGATATAGTGGCATTACAGT+AGG 0.561938 5_4:+31936775 Msa0847880:CDS
TGAAATTGTGGATAGTTTGG+AGG 0.562109 5_4:+31934059 Msa0847880:CDS
AAGTACCTTATAGAATCAAA+GGG 0.565661 5_4:+31934951 Msa0847880:CDS
GCAGCCATTGTTACTTGTGG+AGG 0.566120 5_4:+31933410 Msa0847880:CDS
TTTAGCATTCCCTGAAGCAT+CGG 0.571949 5_4:-31935176 None:intergenic
TCCACAATTTCACTAACTCC+AGG 0.574739 5_4:-31934048 None:intergenic
CACTGAGCGCCAGCAGATGT+AGG 0.576254 5_4:-31933019 None:intergenic
CGGGGTTTATATCCAACAAG+AGG 0.576795 5_4:+31935210 Msa0847880:CDS
ATGCAATCATCCTTAGCTAG+TGG 0.577715 5_4:+31934773 Msa0847880:CDS
TTGCTATGAATCCACTGCTA+CGG 0.580298 5_4:-31934751 None:intergenic
TGTCGAGCAAATGCTTCAGA+TGG 0.581648 5_4:+31935684 Msa0847880:CDS
TATGGTGTAACTGAGATTGT+TGG 0.587899 5_4:+31933789 Msa0847880:CDS
CATCGATGCTTAACTTCGAC+CGG 0.587899 5_4:+31936883 Msa0847880:CDS
GGGTTCATCGAGCTGGACCT+CGG 0.593410 5_4:+31933354 Msa0847880:intron
TTGAGGATGCGATATTACTT+CGG 0.597150 5_4:-31936833 None:intergenic
GCTGTAGTTTGTGTGGCAGA+GGG 0.603354 5_4:+31934978 Msa0847880:CDS
CTAATGACATCGTTAAGACC+AGG 0.614698 5_4:-31933440 None:intergenic
TGCTAAACTTGGAGATATCG+GGG 0.616169 5_4:+31935192 Msa0847880:CDS
TCTCTGTGCTTCTTCAACCG+CGG 0.616533 5_4:-31934565 None:intergenic
CACTGTACTTGGACAGAATG+CGG 0.618998 5_4:+31935716 Msa0847880:CDS
TGATCCTGGCTGCAATTGGG+TGG 0.622411 5_4:+31933045 Msa0847880:CDS
GGGATCAGCTGTAGTTTGTG+TGG 0.624112 5_4:+31934971 Msa0847880:CDS
CAGTCCTCCACAAGTAACAA+TGG 0.624369 5_4:-31933414 None:intergenic
CAAAACATTCATCTCTCAGG+TGG 0.633928 5_4:+31933997 Msa0847880:CDS
GCTGCAATTGGGTGGAACAA+TGG 0.635142 5_4:+31933053 Msa0847880:CDS
AATATCGCATCCTCAATTGG+TGG 0.636705 5_4:+31936840 Msa0847880:CDS
ATTGATACAGGTCCTATCTG+TGG 0.640923 5_4:+31934876 Msa0847880:intron
TGGATCCAAACAGTCGAATG+TGG 0.644484 5_4:+31936860 Msa0847880:CDS
TAGGCGCATAGTGCATATCA+CGG 0.649368 5_4:+31934704 Msa0847880:intron
TGATGTATGCCTAATTCCCG+AGG 0.666643 5_4:+31934802 Msa0847880:CDS
AGGTGACTCAAAACTCCATG+AGG 0.677996 5_4:-31934927 None:intergenic
CTATTAGGAGTTTCACGCGG+AGG 0.683751 5_4:+31934024 Msa0847880:CDS
TGCAAATGCAATTCACGACG+AGG 0.685123 5_4:+31934275 Msa0847880:CDS
AGCCTATTAGGAGTTTCACG+CGG 0.736304 5_4:+31934021 Msa0847880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTCTGAAATTTTTTT+AGG + chr5_4:31933333-31933352 Msa0847880:intron 10.0%
!!! AAAATTCTGAAATTTTTTTA+GGG + chr5_4:31933334-31933353 Msa0847880:intron 10.0%
!! TACATATAAAATAAAAATCA+CGG - chr5_4:31934183-31934202 None:intergenic 10.0%
!! TTCAATAATATTTACATATA+TGG - chr5_4:31936172-31936191 None:intergenic 10.0%
!! AATCAATTTCATTAATAGAA+TGG - chr5_4:31934097-31934116 None:intergenic 15.0%
!! AATGCAATTAACTAATATAA+GGG - chr5_4:31934316-31934335 None:intergenic 15.0%
!! AAATGCAATTAACTAATATA+AGG - chr5_4:31934317-31934336 None:intergenic 15.0%
!! ATTAAATAGAAAACAATACT+GGG - chr5_4:31934648-31934667 None:intergenic 15.0%
!! TATTAAATAGAAAACAATAC+TGG - chr5_4:31934649-31934668 None:intergenic 15.0%
!! TAGAATTAACATAAAAACAA+GGG + chr5_4:31935353-31935372 Msa0847880:intron 15.0%
!!! TATGATTTCACTTTTATTAT+TGG + chr5_4:31935783-31935802 Msa0847880:intron 15.0%
!!! AACTATTGTTCATAATTTTC+CGG - chr5_4:31933200-31933219 None:intergenic 20.0%
!!! AAATCTCTTTCAAAAGTTTT+TGG + chr5_4:31933552-31933571 Msa0847880:intron 20.0%
!!! TAAGTTTTTTTAGTAGTTTC+TGG + chr5_4:31933618-31933637 Msa0847880:intron 20.0%
!!! AAGTTTTTTTAGTAGTTTCT+GGG + chr5_4:31933619-31933638 Msa0847880:intron 20.0%
!! TTGTAATCTATGATTTCTTA+AGG + chr5_4:31934349-31934368 Msa0847880:intron 20.0%
!!! ATATCATTGTCTATAGTTTT+CGG - chr5_4:31934513-31934532 None:intergenic 20.0%
!! AATAAATTCTGCATATATAG+AGG + chr5_4:31934590-31934609 Msa0847880:CDS 20.0%
!!! TTTTTCGGAAAAAAAAATTC+AGG - chr5_4:31935070-31935089 None:intergenic 20.0%
!!! CTGATGAATGATATATTTTT+CGG - chr5_4:31935085-31935104 None:intergenic 20.0%
!! CTAGAATTAACATAAAAACA+AGG + chr5_4:31935352-31935371 Msa0847880:intron 20.0%
!!! CTTTTAACAGAAATAAAACT+AGG - chr5_4:31935502-31935521 None:intergenic 20.0%
!! TCATACATATATACAACAAT+GGG - chr5_4:31935768-31935787 None:intergenic 20.0%
!! ATCATACATATATACAACAA+TGG - chr5_4:31935769-31935788 None:intergenic 20.0%
!! AAATAATATATAGCTAGAAG+TGG - chr5_4:31936056-31936075 None:intergenic 20.0%
!!! CATTTTTCATCCTTATAATT+GGG - chr5_4:31936088-31936107 None:intergenic 20.0%
!!! ACATTTTTCATCCTTATAAT+TGG - chr5_4:31936089-31936108 None:intergenic 20.0%
!! TGAATATTTACAATAAACTG+TGG + chr5_4:31936202-31936221 Msa0847880:intron 20.0%
!! AGTTTATGCTTTATAAGATT+AGG + chr5_4:31936338-31936357 Msa0847880:intron 20.0%
!! AGAAAATAATCAAATGAAGT+CGG - chr5_4:31936914-31936933 None:intergenic 20.0%
!! TTGAAGTATATATTTTTCCG+AGG - chr5_4:31933374-31933393 None:intergenic 25.0%
!! TTTTTAACAGCTGAAACAAA+CGG - chr5_4:31933534-31933553 None:intergenic 25.0%
!!! AGTTTTTTTAGTAGTTTCTG+GGG + chr5_4:31933620-31933639 Msa0847880:intron 25.0%
! GTAATCACACTTGAAATATA+TGG + chr5_4:31933771-31933790 Msa0847880:CDS 25.0%
!!! GAATCAATTGTTGTTTAGAA+GGG - chr5_4:31933881-31933900 None:intergenic 25.0%
! AGACAAATATTACTTCTGTA+TGG - chr5_4:31934123-31934142 None:intergenic 25.0%
!! TCTTAAGGAAATCATCTTTT+TGG + chr5_4:31934364-31934383 Msa0847880:intron 25.0%
! AGACAATGATATTCTATTGA+TGG + chr5_4:31934521-31934540 Msa0847880:CDS 25.0%
!!! AACTTTTAACTTACATACCT+CGG - chr5_4:31934822-31934841 None:intergenic 25.0%
! TCGAATAGATAAATTGATAC+AGG + chr5_4:31934864-31934883 Msa0847880:intron 25.0%
! AAGTACCTTATAGAATCAAA+GGG + chr5_4:31934951-31934970 Msa0847880:CDS 25.0%
! GTGCTTACAATAATGTAAAT+GGG + chr5_4:31935253-31935272 Msa0847880:intron 25.0%
! GGTTGAAACTTTATGAAAAT+TGG + chr5_4:31935274-31935293 Msa0847880:intron 25.0%
! GTTTGATACTTCATCTATAT+AGG - chr5_4:31935319-31935338 None:intergenic 25.0%
! ATTAACATAAAAACAAGGGA+TGG + chr5_4:31935357-31935376 Msa0847880:intron 25.0%
!!! GATGGTGATTTTAATATTCT+TGG + chr5_4:31935375-31935394 Msa0847880:intron 25.0%
! TCAGACGAAAAATTATTTCA+AGG + chr5_4:31935605-31935624 Msa0847880:intron 25.0%
!!! AAAGAGTTGATATGAATACA+AGG - chr5_4:31935838-31935857 None:intergenic 25.0%
! TTACAATAAACTGTGGTAAA+TGG + chr5_4:31936209-31936228 Msa0847880:intron 25.0%
! TTATGCTTTATAAGATTAGG+AGG + chr5_4:31936341-31936360 Msa0847880:intron 25.0%
! TATGCTTTATAAGATTAGGA+GGG + chr5_4:31936342-31936361 Msa0847880:intron 25.0%
! GTTTGTGTTTATTTATTGTG+TGG + chr5_4:31936390-31936409 Msa0847880:intron 25.0%
! ATATCTAGATGTTGGAAATT+CGG + chr5_4:31936478-31936497 Msa0847880:intron 25.0%
! CAACTTGTGTTTAAATACTA+CGG - chr5_4:31936528-31936547 None:intergenic 25.0%
!!! TGTTATTCGATATTGATTCT+CGG + chr5_4:31936720-31936739 Msa0847880:intron 25.0%
! GAAAATAATCAAATGAAGTC+GGG - chr5_4:31936913-31936932 None:intergenic 25.0%
TTAAATACCAGACTGACATT+AGG - chr5_4:31933095-31933114 None:intergenic 30.0%
!! ATTGCAAGCAACTTGTTTTT+CGG + chr5_4:31933137-31933156 Msa0847880:intron 30.0%
ATTTAGAGATGAACATTCTC+CGG + chr5_4:31933178-31933197 Msa0847880:intron 30.0%
!! CGATCAAATTGTTTCTGATA+TGG + chr5_4:31933476-31933495 Msa0847880:intron 30.0%
! TTTTAACAGCTGAAACAAAC+GGG - chr5_4:31933533-31933552 None:intergenic 30.0%
GTCGTTAACGAATATATTTG+AGG - chr5_4:31933680-31933699 None:intergenic 30.0%
! TAACGACATGTACGTTTTAT+TGG + chr5_4:31933693-31933712 Msa0847880:intron 30.0%
! TTTTTCTGACAAAGAGTTGA+TGG + chr5_4:31933833-31933852 Msa0847880:CDS 30.0%
!! CGAATCAATTGTTGTTTAGA+AGG - chr5_4:31933882-31933901 None:intergenic 30.0%
TAGTGAAATTGTGGATAGTT+TGG + chr5_4:31934056-31934075 Msa0847880:CDS 30.0%
! GTATATTGTTGATTGATTGC+AGG + chr5_4:31934200-31934219 Msa0847880:intron 30.0%
!! CTATTGATGGACAAAACTTT+TGG + chr5_4:31934534-31934553 Msa0847880:CDS 30.0%
! AATCTTTTACCCGTCTTAAT+AGG + chr5_4:31934685-31934704 Msa0847880:intron 30.0%
AATCGGGATTGTGAAATTAA+TGG + chr5_4:31934727-31934746 Msa0847880:CDS 30.0%
ATCGGGATTGTGAAATTAAT+GGG + chr5_4:31934728-31934747 Msa0847880:CDS 30.0%
!!! ACTTTTAACTTACATACCTC+GGG - chr5_4:31934821-31934840 None:intergenic 30.0%
AAGGTTCCTTTCAATTTACA+TGG + chr5_4:31934903-31934922 Msa0847880:CDS 30.0%
! TTGATTCTATAAGGTACTTG+AGG - chr5_4:31934950-31934969 None:intergenic 30.0%
CAAGTACCTTATAGAATCAA+AGG + chr5_4:31934950-31934969 Msa0847880:CDS 30.0%
! TTTGAAGTAAATTCTGCATC+AGG - chr5_4:31935144-31935163 None:intergenic 30.0%
AATGCTAAACTTGGAGATAT+CGG + chr5_4:31935190-31935209 Msa0847880:CDS 30.0%
AATAATAGCAAACCTCTTGT+TGG - chr5_4:31935225-31935244 None:intergenic 30.0%
!! GGTTTGCTATTATTTGCTTA+CGG + chr5_4:31935231-31935250 Msa0847880:intron 30.0%
GGTGCTTACAATAATGTAAA+TGG + chr5_4:31935252-31935271 Msa0847880:intron 30.0%
TAATTCTAGACATCTTACAG+TGG - chr5_4:31935341-31935360 None:intergenic 30.0%
CGTCTGAAAAAAAAAGTTGT+TGG - chr5_4:31935592-31935611 None:intergenic 30.0%
TTGATCCAACATACATGATT+CGG + chr5_4:31935658-31935677 Msa0847880:CDS 30.0%
! ATTGGTTCTCAATTCTCATA+TGG + chr5_4:31935801-31935820 Msa0847880:intron 30.0%
!! AATACAACAGTTCTAAAACG+CGG - chr5_4:31935971-31935990 None:intergenic 30.0%
TTACACTTCACCCAATTATA+AGG + chr5_4:31936075-31936094 Msa0847880:intron 30.0%
! GATATAGTGTTTTCAGAGAA+AGG + chr5_4:31936140-31936159 Msa0847880:intron 30.0%
AGACATAGCATGATTTACAA+GGG - chr5_4:31936264-31936283 None:intergenic 30.0%
TAGACATAGCATGATTTACA+AGG - chr5_4:31936265-31936284 None:intergenic 30.0%
! TCTAAAGCAGCAATCTTATA+TGG - chr5_4:31936314-31936333 None:intergenic 30.0%
!! AGAAAAAGCATTAAAGACAG+TGG - chr5_4:31936369-31936388 None:intergenic 30.0%
GAATTTCCAACATCTAGATA+TGG - chr5_4:31936479-31936498 None:intergenic 30.0%
! TGATTTTCCTAATGTCAGTC+TGG + chr5_4:31933085-31933104 Msa0847880:intron 35.0%
!! AAGCAACTTGTTTTTCGGAA+AGG + chr5_4:31933142-31933161 Msa0847880:intron 35.0%
!! AGCAACTTGTTTTTCGGAAA+GGG + chr5_4:31933143-31933162 Msa0847880:intron 35.0%
CTTCAAACCAGAAGAAGTAA+AGG + chr5_4:31933388-31933407 Msa0847880:CDS 35.0%
TCTTAACGATGTCATTAGAC+AGG + chr5_4:31933445-31933464 Msa0847880:CDS 35.0%
TGAGGTCTGCTAATAACTAA+GGG - chr5_4:31933662-31933681 None:intergenic 35.0%
TTGAGGTCTGCTAATAACTA+AGG - chr5_4:31933663-31933682 None:intergenic 35.0%
TATGGTGTAACTGAGATTGT+TGG + chr5_4:31933789-31933808 Msa0847880:CDS 35.0%
! GAGATTGTTGGTATTCCTTT+TGG + chr5_4:31933801-31933820 Msa0847880:CDS 35.0%
!! CAAAGAGTTGATGGAAATAC+CGG + chr5_4:31933842-31933861 Msa0847880:CDS 35.0%
GAAGGGAAATATGAGATTAC+CGG - chr5_4:31933864-31933883 None:intergenic 35.0%
GATTTCATTTACAGCTGTCA+AGG + chr5_4:31933965-31933984 Msa0847880:intron 35.0%
GTTCAAAACATTCATCTCTC+AGG + chr5_4:31933994-31934013 Msa0847880:CDS 35.0%
TGAAATTGTGGATAGTTTGG+AGG + chr5_4:31934059-31934078 Msa0847880:CDS 35.0%
TTGATTGATTGCAGGAAAGA+GGG + chr5_4:31934208-31934227 Msa0847880:intron 35.0%
ATCAACATGCTCTTTGTGTT+GGG + chr5_4:31934231-31934250 Msa0847880:CDS 35.0%
! GTTTTCAGTGCTGTAAAAGA+CGG + chr5_4:31934463-31934482 Msa0847880:intron 35.0%
TGAGGTCCATGTAAATTGAA+AGG - chr5_4:31934912-31934931 None:intergenic 35.0%
TTCAATTTACATGGACCTCA+TGG + chr5_4:31934912-31934931 Msa0847880:CDS 35.0%
CTGATCCCTTTGATTCTATA+AGG - chr5_4:31934959-31934978 None:intergenic 35.0%
ATGCTAAACTTGGAGATATC+GGG + chr5_4:31935191-31935210 Msa0847880:CDS 35.0%
TGATCCAACATACATGATTC+GGG + chr5_4:31935659-31935678 Msa0847880:CDS 35.0%
! GGAATTTTATGCACTGTACT+TGG + chr5_4:31935705-31935724 Msa0847880:CDS 35.0%
TAGACGCTATTTAACAACTC+TGG - chr5_4:31935876-31935895 None:intergenic 35.0%
TTGTACTAAATAGCGCAACA+TGG - chr5_4:31935933-31935952 None:intergenic 35.0%
AAAGCAGCAATCTTATATGG+AGG - chr5_4:31936311-31936330 None:intergenic 35.0%
GGGAATTGTATTCTCATTCA+AGG - chr5_4:31936419-31936438 None:intergenic 35.0%
! ACCATTTGCATTTTGTGCTT+GGG - chr5_4:31936440-31936459 None:intergenic 35.0%
! TACCATTTGCATTTTGTGCT+TGG - chr5_4:31936441-31936460 None:intergenic 35.0%
TCTAGATATGGACACATAAG+TGG - chr5_4:31936467-31936486 None:intergenic 35.0%
ATGTGTCCATATCTAGATGT+TGG + chr5_4:31936470-31936489 Msa0847880:intron 35.0%
! TACAACAAACATTTTGCAGC+CGG + chr5_4:31936580-31936599 Msa0847880:intron 35.0%
CTATGTTTCCTTTCGAATCA+AGG + chr5_4:31936668-31936687 Msa0847880:intron 35.0%
! AACAGTAACCTTGATTCGAA+AGG - chr5_4:31936679-31936698 None:intergenic 35.0%
TTGAGGATGCGATATTACTT+CGG - chr5_4:31936836-31936855 None:intergenic 35.0%
AGTAATATCGCATCCTCAAT+TGG + chr5_4:31936837-31936856 Msa0847880:CDS 35.0%
! ATGACTAGCGTAAAGCGTTA+TGG + chr5_4:31933308-31933327 Msa0847880:intron 40.0%
!!! TTTTTTAGGGTTCATCGAGC+TGG + chr5_4:31933347-31933366 Msa0847880:intron 40.0%
CTAATGACATCGTTAAGACC+AGG - chr5_4:31933443-31933462 None:intergenic 40.0%
CAAAACATTCATCTCTCAGG+TGG + chr5_4:31933997-31934016 Msa0847880:CDS 40.0%
ACCTGGAGTTAGTGAAATTG+TGG + chr5_4:31934047-31934066 Msa0847880:CDS 40.0%
TCCACAATTTCACTAACTCC+AGG - chr5_4:31934051-31934070 None:intergenic 40.0%
GTTGATTGATTGCAGGAAAG+AGG + chr5_4:31934207-31934226 Msa0847880:intron 40.0%
GATCAACATGCTCTTTGTGT+TGG + chr5_4:31934230-31934249 Msa0847880:CDS 40.0%
CGGATCAAAGTGTGTGTTAT+AGG + chr5_4:31934483-31934502 Msa0847880:CDS 40.0%
CATAGTGCATATCACGGAAT+CGG + chr5_4:31934710-31934729 Msa0847880:CDS 40.0%
ATAGTGCATATCACGGAATC+GGG + chr5_4:31934711-31934730 Msa0847880:CDS 40.0%
TTGCTATGAATCCACTGCTA+CGG - chr5_4:31934754-31934773 None:intergenic 40.0%
ATGCAATCATCCTTAGCTAG+TGG + chr5_4:31934773-31934792 Msa0847880:CDS 40.0%
ATCAATCTGTCCACTAGCTA+AGG - chr5_4:31934786-31934805 None:intergenic 40.0%
ACTTACATACCTCGGGAATT+AGG - chr5_4:31934814-31934833 None:intergenic 40.0%
TCGACAAAAGACAGAAAGCT+AGG - chr5_4:31934848-31934867 None:intergenic 40.0%
ATTGATACAGGTCCTATCTG+TGG + chr5_4:31934876-31934895 Msa0847880:intron 40.0%
ACTAATGATACCGATGCTTC+AGG + chr5_4:31935166-31935185 Msa0847880:CDS 40.0%
CTAATGATACCGATGCTTCA+GGG + chr5_4:31935167-31935186 Msa0847880:CDS 40.0%
TTTAGCATTCCCTGAAGCAT+CGG - chr5_4:31935179-31935198 None:intergenic 40.0%
TGCTAAACTTGGAGATATCG+GGG + chr5_4:31935192-31935211 Msa0847880:CDS 40.0%
AACTGTGGTAAATGGAACAC+TGG + chr5_4:31936217-31936236 Msa0847880:intron 40.0%
ATGGAACACTGGAGTACAAT+AGG + chr5_4:31936228-31936247 Msa0847880:intron 40.0%
! CCATTTGCATTTTGTGCTTG+GGG - chr5_4:31936439-31936458 None:intergenic 40.0%
ATCAACTATGCTTACGTCTC+CGG - chr5_4:31936602-31936621 None:intergenic 40.0%
GAACACGTGACATATGATCA+TGG - chr5_4:31936631-31936650 None:intergenic 40.0%
!! TCGATATTGATTCTCGGCTT+TGG + chr5_4:31936726-31936745 Msa0847880:intron 40.0%
GGATATAGTGGCATTACAGT+AGG + chr5_4:31936775-31936794 Msa0847880:CDS 40.0%
TGCGATATTACTTCGGTGAT+TGG - chr5_4:31936829-31936848 None:intergenic 40.0%
AATATCGCATCCTCAATTGG+TGG + chr5_4:31936840-31936859 Msa0847880:CDS 40.0%
CAGCAGATGTAGGTGATGAA+TGG - chr5_4:31933012-31933031 None:intergenic 45.0%
CATTCATCACCTACATCTGC+TGG + chr5_4:31933010-31933029 Msa0847880:CDS 45.0%
CATTGATCCTGGCTGCAATT+GGG + chr5_4:31933042-31933061 Msa0847880:CDS 45.0%
ATGGCTGCCTTTACTTCTTC+TGG - chr5_4:31933398-31933417 None:intergenic 45.0%
! AAGGCAGCCATTGTTACTTG+TGG + chr5_4:31933407-31933426 Msa0847880:CDS 45.0%
CAGTCCTCCACAAGTAACAA+TGG - chr5_4:31933417-31933436 None:intergenic 45.0%
!! GGTATTCCTTTTGGCTATCG+CGG + chr5_4:31933810-31933829 Msa0847880:CDS 45.0%
GAAAAACCGCGATAGCCAAA+AGG - chr5_4:31933819-31933838 None:intergenic 45.0%
AGCCTATTAGGAGTTTCACG+CGG + chr5_4:31934021-31934040 Msa0847880:CDS 45.0%
AACATGCTCTTTGTGTTGGG+TGG + chr5_4:31934234-31934253 Msa0847880:CDS 45.0%
CTCTTTGTGTTGGGTGGAAA+TGG + chr5_4:31934240-31934259 Msa0847880:CDS 45.0%
TGCAAATGCAATTCACGACG+AGG + chr5_4:31934275-31934294 Msa0847880:CDS 45.0%
!!! AACTTTTGGCTTTGACACCG+CGG + chr5_4:31934548-31934567 Msa0847880:CDS 45.0%
CACTATGCGCCTATTAAGAC+GGG - chr5_4:31934697-31934716 None:intergenic 45.0%
GCACTATGCGCCTATTAAGA+CGG - chr5_4:31934698-31934717 None:intergenic 45.0%
TAGGCGCATAGTGCATATCA+CGG + chr5_4:31934704-31934723 Msa0847880:intron 45.0%
! AAATTAATGGGCCGTAGCAG+TGG + chr5_4:31934740-31934759 Msa0847880:CDS 45.0%
TGATGTATGCCTAATTCCCG+AGG + chr5_4:31934802-31934821 Msa0847880:CDS 45.0%
AGGTCCTATCTGTGGTTCAA+AGG + chr5_4:31934884-31934903 Msa0847880:intron 45.0%
GGAACCTTTGAACCACAGAT+AGG - chr5_4:31934891-31934910 None:intergenic 45.0%
AGGTGACTCAAAACTCCATG+AGG - chr5_4:31934930-31934949 None:intergenic 45.0%
GCTTCAGGGAATGCTAAACT+TGG + chr5_4:31935181-31935200 Msa0847880:CDS 45.0%
CGGGGTTTATATCCAACAAG+AGG + chr5_4:31935210-31935229 Msa0847880:CDS 45.0%
TGTCGAGCAAATGCTTCAGA+TGG + chr5_4:31935684-31935703 Msa0847880:CDS 45.0%
CACTGTACTTGGACAGAATG+CGG + chr5_4:31935716-31935735 Msa0847880:CDS 45.0%
TCAATTGTGGATCGCGGAAT+AGG - chr5_4:31936018-31936037 None:intergenic 45.0%
AGCAACAGTGCTGTCAATTG+TGG - chr5_4:31936031-31936050 None:intergenic 45.0%
CCCCAAGCACAAAATGCAAA+TGG + chr5_4:31936436-31936455 Msa0847880:intron 45.0%
! ATTCTCGGCTTTGGTATTGC+AGG + chr5_4:31936735-31936754 Msa0847880:intron 45.0%
GCTTTGGTATTGCAGGTTCA+TGG + chr5_4:31936742-31936761 Msa0847880:intron 45.0%
! GGTGCATTTGCTGGATATAG+TGG + chr5_4:31936763-31936782 Msa0847880:CDS 45.0%
CTGTTTGGATCCACCAATTG+AGG - chr5_4:31936853-31936872 None:intergenic 45.0%
TGGATCCAAACAGTCGAATG+TGG + chr5_4:31936860-31936879 Msa0847880:CDS 45.0%
CATCGATGCTTAACTTCGAC+CGG + chr5_4:31936883-31936902 Msa0847880:CDS 45.0%
!! TCAAATGAAGTCGGGTTGAC+CGG - chr5_4:31936905-31936924 None:intergenic 45.0%
! GCATTGATCCTGGCTGCAAT+TGG + chr5_4:31933041-31933060 Msa0847880:CDS 50.0%
GCTGCAATTGGGTGGAACAA+TGG + chr5_4:31933053-31933072 Msa0847880:CDS 50.0%
! GCAGCCATTGTTACTTGTGG+AGG + chr5_4:31933410-31933429 Msa0847880:CDS 50.0%
CTCCGCGTGAAACTCCTAAT+AGG - chr5_4:31934026-31934045 None:intergenic 50.0%
CTATTAGGAGTTTCACGCGG+AGG + chr5_4:31934024-31934043 Msa0847880:CDS 50.0%
GGTGGAAATGGTACACATGC+TGG + chr5_4:31934252-31934271 Msa0847880:CDS 50.0%
TCTCTGTGCTTCTTCAACCG+CGG - chr5_4:31934568-31934587 None:intergenic 50.0%
! GGGATCAGCTGTAGTTTGTG+TGG + chr5_4:31934971-31934990 Msa0847880:CDS 50.0%
! AGCTGTAGTTTGTGTGGCAG+AGG + chr5_4:31934977-31934996 Msa0847880:CDS 50.0%
! GCTGTAGTTTGTGTGGCAGA+GGG + chr5_4:31934978-31934997 Msa0847880:CDS 50.0%
CACGCCCGAATCATGTATGT+TGG - chr5_4:31935666-31935685 None:intergenic 50.0%
GTGCTGTCAATTGTGGATCG+CGG - chr5_4:31936024-31936043 None:intergenic 50.0%
CAGGTTCATGGTGCATTTGC+TGG + chr5_4:31936754-31936773 Msa0847880:intron 50.0%
CGATGCCACATTCGACTGTT+TGG - chr5_4:31936868-31936887 None:intergenic 50.0%
TGATCCTGGCTGCAATTGGG+TGG + chr5_4:31933045-31933064 Msa0847880:CDS 55.0%
TGTTCCACCCAATTGCAGCC+AGG - chr5_4:31933052-31933071 None:intergenic 55.0%
ACTTGTGGAGGACTGTGTCC+TGG + chr5_4:31933422-31933441 Msa0847880:CDS 55.0%
CTCTCAGGTGGCAGCCTATT+AGG + chr5_4:31934009-31934028 Msa0847880:CDS 55.0%
CACTGAGCGCCAGCAGATGT+AGG - chr5_4:31933022-31933041 None:intergenic 60.0%
! GGCGCTCAGTGCATTGATCC+TGG + chr5_4:31933031-31933050 Msa0847880:CDS 60.0%
GGGTTCATCGAGCTGGACCT+CGG + chr5_4:31933354-31933373 Msa0847880:intron 60.0%
GTTTGTGTGGCAGAGGGAGC+AGG + chr5_4:31934984-31935003 Msa0847880:CDS 60.0%
GGAGTTTCACGCGGAGGACC+TGG + chr5_4:31934030-31934049 Msa0847880:CDS 65.0%
TGTGGCAGAGGGAGCAGGAC+AGG + chr5_4:31934989-31935008 Msa0847880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 31932974 31936952 31932974 ID=Msa0847880;Name=Msa0847880
chr5_4 mRNA 31932974 31936952 31932974 ID=Msa0847880-mRNA-1;Parent=Msa0847880;Name=Msa0847880-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.7|0.54|1|1|1|11|28|416
chr5_4 exon 31932974 31933074 31932974 ID=Msa0847880-mRNA-1:exon:11156;Parent=Msa0847880-mRNA-1
chr5_4 exon 31933355 31933466 31933355 ID=Msa0847880-mRNA-1:exon:11157;Parent=Msa0847880-mRNA-1
chr5_4 exon 31933768 31933863 31933768 ID=Msa0847880-mRNA-1:exon:11158;Parent=Msa0847880-mRNA-1
chr5_4 exon 31933979 31934080 31933979 ID=Msa0847880-mRNA-1:exon:11159;Parent=Msa0847880-mRNA-1
chr5_4 exon 31934222 31934296 31934222 ID=Msa0847880-mRNA-1:exon:11160;Parent=Msa0847880-mRNA-1
chr5_4 exon 31934471 31934611 31934471 ID=Msa0847880-mRNA-1:exon:11161;Parent=Msa0847880-mRNA-1
chr5_4 exon 31934707 31934827 31934707 ID=Msa0847880-mRNA-1:exon:11162;Parent=Msa0847880-mRNA-1
chr5_4 exon 31934886 31935010 31934886 ID=Msa0847880-mRNA-1:exon:11163;Parent=Msa0847880-mRNA-1
chr5_4 exon 31935151 31935231 31935151 ID=Msa0847880-mRNA-1:exon:11164;Parent=Msa0847880-mRNA-1
chr5_4 exon 31935609 31935737 31935609 ID=Msa0847880-mRNA-1:exon:11165;Parent=Msa0847880-mRNA-1
chr5_4 exon 31936757 31936952 31936757 ID=Msa0847880-mRNA-1:exon:11166;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31932974 31933074 31932974 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31933355 31933466 31933355 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31933768 31933863 31933768 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31933979 31934080 31933979 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31934222 31934296 31934222 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31934471 31934611 31934471 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31934707 31934827 31934707 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31934886 31935010 31934886 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31935151 31935231 31935151 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31935609 31935737 31935609 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 CDS 31936757 31936924 31936757 ID=Msa0847880-mRNA-1:cds;Parent=Msa0847880-mRNA-1
chr5_4 three_prime_UTR 31936925 31936952 31936925 ID=Msa0847880-mRNA-1:three_prime_utr;Parent=Msa0847880-mRNA-1
Gene Sequence

>Msa0847880

ATGTTTTTACTTGCTTTGATCTTTCAGACAATATACCATTCATCACCTACATCTGCTGGCGCTCAGTGCATTGATCCTGGCTGCAATTGGGTGGAACAATGGGTTCATCGAGCTGGACCTCGGAAAAATATATACTTCAAACCAGAAGAAGTAAAGGCAGCCATTGTTACTTGTGGAGGACTGTGTCCTGGTCTTAACGATGTCATTAGACAGATTGTAATCACACTTGAAATATATGGTGTAACTGAGATTGTTGGTATTCCTTTTGGCTATCGCGGTTTTTCTGACAAAGAGTTGATGGAAATACCGCTGTCAAGGAAAGTCGTTCAAAACATTCATCTCTCAGGTGGCAGCCTATTAGGAGTTTCACGCGGAGGACCTGGAGTTAGTGAAATTGTGGATAGTTTGGAGGAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGGTACACATGCTGGTGCAAATGCAATTCACGACGAGTGCTGTAAAAGACGGATCAAAGTGTGTGTTATAGGAGTGCCGAAAACTATAGACAATGATATTCTATTGATGGACAAAACTTTTGGCTTTGACACCGCGGTTGAAGAAGCACAGAGAGCAATAAATTCTGCATATATAGAGGCGCATAGTGCATATCACGGAATCGGGATTGTGAAATTAATGGGCCGTAGCAGTGGATTCATAGCAATGCAATCATCCTTAGCTAGTGGACAGATTGATGTATGCCTAATTCCCGAGGTATGTCCTATCTGTGGTTCAAAGGTTCCTTTCAATTTACATGGACCTCATGGAGTTTTGAGTCACCTCAAGTACCTTATAGAATCAAAGGGATCAGCTGTAGTTTGTGTGGCAGAGGGAGCAGGACAGAATTTACTTCAAAAAACTAATGATACCGATGCTTCAGGGAATGCTAAACTTGGAGATATCGGGGTTTATATCCAACAAGAGACGAAAAATTATTTCAAGGAGAATGATATTCATGCTGATGTGAAATATATTGATCCAACATACATGATTCGGGCGTGTCGAGCAAATGCTTCAGATGGAATTTTATGCACTGTACTTGGACAGAATGCGGTTCATGGTGCATTTGCTGGATATAGTGGCATTACAGTAGGCATATGTAACACACATTATGCTTACTTTCCAATCACCGAAGTAATATCGCATCCTCAATTGGTGGATCCAAACAGTCGAATGTGGCATCGATGCTTAACTTCGACCGGTCAACCCGACTTCATTTGA

Protein sequence

>Msa0847880

MFLLALIFQTIYHSSPTSAGAQCIDPGCNWVEQWVHRAGPRKNIYFKPEEVKAAIVTCGGLCPGLNDVIRQIVITLEIYGVTEIVGIPFGYRGFSDKELMEIPLSRKVVQNIHLSGGSLLGVSRGGPGVSEIVDSLEERGINMLFVLGGNGTHAGANAIHDECCKRRIKVCVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGFIAMQSSLASGQIDVCLIPEVCPICGSKVPFNLHGPHGVLSHLKYLIESKGSAVVCVAEGAGQNLLQKTNDTDASGNAKLGDIGVYIQQETKNYFKENDIHADVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGYSGITVGICNTHYAYFPITEVISHPQLVDPNSRMWHRCLTSTGQPDFI*