AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0762340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762340 MtrunA17_Chr5g0412711 96.861 223 7 0 1 223 1 223 9.00e-159 438
Msa0762340 MtrunA17_Chr4g0058551 67.257 113 35 2 12 123 5 116 6.43e-44 145
Msa0762340 MtrunA17_Chr3g0117061 66.087 115 37 2 12 125 5 118 1.60e-43 145
Msa0762340 MtrunA17_Chr4g0048541 41.781 146 72 2 16 159 29 163 2.91e-31 118
Msa0762340 MtrunA17_Chr2g0277031 49.533 107 52 2 11 117 8 112 1.98e-29 112
Msa0762340 MtrunA17_Chr4g0049441 47.414 116 56 3 17 127 40 155 3.81e-28 110
Msa0762340 MtrunA17_Chr6g0461841 51.961 102 48 1 16 117 191 291 6.43e-28 111
Msa0762340 MtrunA17_Chr2g0279951 47.000 100 52 1 17 115 45 144 3.80e-27 107
Msa0762340 MtrunA17_Chr1g0196631 45.370 108 58 1 8 115 186 292 1.63e-25 103
Msa0762340 MtrunA17_Chr4g0065211 47.115 104 52 2 16 117 152 254 1.83e-25 103
Msa0762340 MtrunA17_Chr2g0310781 47.000 100 52 1 16 115 151 249 4.37e-25 102
Msa0762340 MtrunA17_Chr2g0305141 51.163 86 41 1 16 101 171 255 1.85e-24 101
Msa0762340 MtrunA17_Chr2g0310761 47.000 100 52 1 16 115 169 267 2.25e-24 100
Msa0762340 MtrunA17_Chr1g0209151 42.857 119 64 2 14 128 53 171 9.38e-24 99.0
Msa0762340 MtrunA17_Chr6g0483611 48.000 100 51 1 12 110 55 154 2.80e-23 97.4
Msa0762340 MtrunA17_Chr8g0357611 46.000 100 53 1 16 115 179 277 1.94e-22 95.1
Msa0762340 MtrunA17_Chr5g0428011 40.708 113 63 3 14 123 25 136 5.65e-22 92.8
Msa0762340 MtrunA17_Chr4g0072741 47.748 111 57 1 5 115 41 150 7.44e-22 93.6
Msa0762340 MtrunA17_Chr5g0440771 37.984 129 73 4 16 138 4 131 3.69e-20 84.7
Msa0762340 MtrunA17_Chr8g0392371 42.241 116 59 3 12 121 49 162 2.23e-19 86.3
Msa0762340 MtrunA17_Chr5g0428071 38.571 140 78 6 7 143 36 170 1.38e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762340 AT3G26510.1 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT3G26510.4 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT3G26510.3 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT3G26510.2 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT3G26510.6 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT3G26510.5 49.533 214 79 5 14 223 8 196 4.27e-53 169
Msa0762340 AT1G70640.1 63.889 108 37 1 14 121 6 111 4.24e-44 146
Msa0762340 AT3G48240.1 60.748 107 37 2 13 119 11 112 7.82e-40 135
Msa0762340 AT5G63130.1 59.836 122 41 3 2 123 4 117 4.69e-36 126
Msa0762340 AT5G63130.2 59.836 122 41 3 2 123 4 117 4.69e-36 126
Msa0762340 AT1G04700.3 38.621 145 84 3 15 158 121 261 3.52e-27 109
Msa0762340 AT5G57610.1 49.000 100 50 1 16 115 24 122 3.60e-27 109
Msa0762340 AT1G04700.1 38.621 145 84 3 15 158 121 261 4.11e-27 108
Msa0762340 AT1G04700.2 38.621 145 84 3 15 158 121 261 4.11e-27 108
Msa0762340 AT4G05150.1 45.098 102 54 1 16 115 59 160 5.18e-27 107
Msa0762340 AT5G49920.1 48.077 104 49 2 14 117 8 106 1.87e-26 103
Msa0762340 AT1G79570.3 46.296 108 57 1 8 115 169 275 1.86e-25 104
Msa0762340 AT2G35050.1 52.747 91 42 1 8 98 169 258 1.96e-25 104
Msa0762340 AT2G35050.2 52.747 91 42 1 8 98 169 258 1.96e-25 104
Msa0762340 AT1G79570.4 46.296 108 57 1 8 115 169 275 2.22e-25 103
Msa0762340 AT1G79570.5 46.296 108 57 1 8 115 169 275 2.22e-25 103
Msa0762340 AT1G79570.2 46.296 108 57 1 8 115 169 275 2.42e-25 103
Msa0762340 AT1G79570.1 46.296 108 57 1 8 115 169 275 2.42e-25 103
Msa0762340 AT2G01190.1 47.170 106 52 2 14 115 73 178 1.07e-24 102
Msa0762340 AT5G09620.1 44.860 107 54 2 16 117 40 146 1.41e-24 101
Msa0762340 AT5G09620.2 44.860 107 54 2 16 117 40 146 1.48e-24 101
Msa0762340 AT5G64430.1 45.370 108 53 2 16 117 45 152 2.24e-24 100
Msa0762340 AT3G26510.7 40.000 175 76 5 53 223 69 218 1.18e-23 94.7
Msa0762340 AT1G16270.1 45.098 102 55 1 14 115 163 263 1.41e-23 99.0
Msa0762340 AT1G16270.2 45.098 102 55 1 14 115 163 263 1.41e-23 99.0
Msa0762340 AT1G16270.3 45.098 102 55 1 14 115 163 263 1.41e-23 99.0
Msa0762340 AT3G46920.2 50.000 86 42 1 16 101 75 159 1.97e-23 98.6
Msa0762340 AT3G46920.1 50.000 86 42 1 16 101 9 93 2.46e-23 98.2
Msa0762340 AT3G24715.1 33.858 127 83 1 16 142 176 301 5.31e-23 97.4
Msa0762340 AT3G24715.3 33.858 127 83 1 16 142 176 301 5.31e-23 97.4
Msa0762340 AT3G24715.2 33.858 127 83 1 16 142 176 301 5.31e-23 97.4
Msa0762340 AT3G18230.1 47.000 100 52 1 3 101 51 150 7.49e-21 90.9
Msa0762340 AT1G25300.1 38.835 103 58 2 16 117 11 109 3.62e-17 78.6

Find 107 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGATGATTCAAAGTTTA+AGG 0.128465 5_2:-20387825 Msa0762340:three_prime_UTR
AGAAGCATATAATGTTAATT+AGG 0.191647 5_2:-20388492 Msa0762340:three_prime_UTR
GAGGAAGGTGCTGTGGATTT+TGG 0.201575 5_2:+20389557 None:intergenic
GAGGAATTTGATGGTGGATT+TGG 0.216069 5_2:+20389405 None:intergenic
AATAATACTAACCGGAAAAT+TGG 0.236150 5_2:+20389287 None:intergenic
TCTTTGTATTACTATGATTC+TGG 0.256087 5_2:-20388551 Msa0762340:three_prime_UTR
GATATATTTGTGATGTAAAA+TGG 0.274395 5_2:-20388398 Msa0762340:three_prime_UTR
AGGAATTTGATGGTGGATTT+GGG 0.286191 5_2:+20389406 None:intergenic
TCATCGTATAGCAGCCTTAA+TGG 0.287086 5_2:-20388896 Msa0762340:CDS
GCTGTTCCGTCGTGTACTTC+TGG 0.290788 5_2:+20388861 None:intergenic
AGTGGGCAGCCAAATCTTTA+TGG 0.309444 5_2:+20387935 None:intergenic
GAAGCATATAATGTTAATTA+GGG 0.313399 5_2:-20388491 Msa0762340:three_prime_UTR
TTAGAGATGAATTGTGTCTA+TGG 0.317455 5_2:+20389508 None:intergenic
GGCTGGAACCTCCACCATTA+AGG 0.320963 5_2:+20388882 None:intergenic
ACCTAGATTAAGTACATCTT+TGG 0.333337 5_2:-20388633 Msa0762340:three_prime_UTR
GAAGCTTTGTTTGAAGATCT+TGG 0.333930 5_2:+20388995 None:intergenic
CGGACTCTCCGAACCCGCTT+CGG 0.345482 5_2:-20389434 Msa0762340:CDS
AATGTTACACAATATGGTTT+TGG 0.354127 5_2:-20387985 Msa0762340:three_prime_UTR
CTATACCTAATCCAAATTCT+TGG 0.373089 5_2:+20387900 None:intergenic
GGACTCTCCGAACCCGCTTC+GGG 0.375133 5_2:-20389433 Msa0762340:CDS
ATGAAGGCTTTGATCTTTAA+CGG 0.384714 5_2:+20389025 None:intergenic
GATAGGTTTGGGTTCGGATT+CGG 0.384729 5_2:+20389462 None:intergenic
TGCTGAAGACCTCGACGCTT+TGG 0.394972 5_2:-20389119 Msa0762340:CDS
GGGAGAACCCGAAGCGGGTT+CGG 0.396756 5_2:+20389426 None:intergenic
GAGTTTGCCATCGGGGTAGC+GGG 0.403035 5_2:+20389357 None:intergenic
CTCTCCCAAGAATTTGGATT+AGG 0.403536 5_2:-20387905 Msa0762340:three_prime_UTR
GGAAACATGGAGAGATCGTC+TGG 0.405199 5_2:-20388788 Msa0762340:CDS
CGACGGAGAGAACGCGAGTA+TGG 0.405589 5_2:+20389320 None:intergenic
GATCAGCGTTCCTCTGAGAT+TGG 0.407436 5_2:+20388735 None:intergenic
AGTCCGATCATGATAGGTTT+GGG 0.410809 5_2:+20389451 None:intergenic
TGAATTTGAATTAAATTTCA+AGG 0.417154 5_2:-20388661 Msa0762340:three_prime_UTR
GAGTCCGATCATGATAGGTT+TGG 0.417451 5_2:+20389450 None:intergenic
TCGGAGAGTCCGATCATGAT+AGG 0.418153 5_2:+20389445 None:intergenic
GTTTGAGAAAGGTTCAGTTT+AGG 0.435706 5_2:+20389484 None:intergenic
TATACCTAATCCAAATTCTT+GGG 0.439239 5_2:+20387901 None:intergenic
GGAGTTTGCCATCGGGGTAG+CGG 0.442611 5_2:+20389356 None:intergenic
GAGATCTTCGTCGGAGGTGA+TGG 0.444682 5_2:+20389093 None:intergenic
ACCAAAGATGTACTTAATCT+AGG 0.447015 5_2:+20388632 None:intergenic
TTCCGTCGTGTACTTCTGGC+TGG 0.449157 5_2:+20388865 None:intergenic
GATCATGATAGGTTTGGGTT+CGG 0.451655 5_2:+20389456 None:intergenic
CACCTCAGAATCGTCGGATA+AGG 0.456227 5_2:-20387847 Msa0762340:three_prime_UTR
TACAGAACTGCTATTGAAGC+TGG 0.462392 5_2:-20389188 Msa0762340:intron
GTTTGCCATCGGGGTAGCGG+GGG 0.478531 5_2:+20389359 None:intergenic
TGGTAACCGCTGCGCGGTAG+AGG 0.485333 5_2:+20388755 None:intergenic
ATCAAATTCCTCTGTAGCTA+TGG 0.485807 5_2:-20389394 Msa0762340:CDS
AAAATGGTTGAGAAGGATTG+AGG 0.486313 5_2:-20388382 Msa0762340:three_prime_UTR
GTTCGGATTCGGTTTGAGAA+AGG 0.501960 5_2:+20389473 None:intergenic
AGATCTTGGTGGAGAAATGA+AGG 0.506422 5_2:+20389009 None:intergenic
AGGTAACGGAGTTTGCCATC+GGG 0.509251 5_2:+20389349 None:intergenic
TCACAGCAGACTGTGAATCA+TGG 0.516563 5_2:-20388809 Msa0762340:CDS
TAATCCAAATTCTTGGGAGA+GGG 0.520076 5_2:+20387907 None:intergenic
TAGAGATGAATTGTGTCTAT+GGG 0.523980 5_2:+20389509 None:intergenic
GGAAAGAGAGGAAGGTGCTG+TGG 0.525643 5_2:+20389550 None:intergenic
GAACTGTATGAAGGAAAGAG+AGG 0.535371 5_2:+20389538 None:intergenic
GAATTTGAATTAAATTTCAA+GGG 0.537003 5_2:-20388660 Msa0762340:three_prime_UTR
ATAGCTACAGAGGAATTTGA+TGG 0.539808 5_2:+20389396 None:intergenic
GAGTATGGCCACCGAGGTAA+CGG 0.553394 5_2:+20389335 None:intergenic
TGATTCACAACGGCAACCAC+TGG 0.554616 5_2:-20388703 Msa0762340:CDS
GTGATGTAAAATGGTTGAGA+AGG 0.556138 5_2:-20388389 Msa0762340:three_prime_UTR
GATTTGGGAGAACCCGAAGC+GGG 0.560074 5_2:+20389421 None:intergenic
ATCCTTATCCGACGATTCTG+AGG 0.560561 5_2:+20387845 None:intergenic
TGCATGTTTGATATCGCAGT+AGG 0.561211 5_2:+20388524 None:intergenic
TTGATCTTTAACGGTGATTG+TGG 0.561405 5_2:+20389034 None:intergenic
CTAATCCAAATTCTTGGGAG+AGG 0.563043 5_2:+20387906 None:intergenic
AGTTTGCCATCGGGGTAGCG+GGG 0.563948 5_2:+20389358 None:intergenic
GAGGTGCTAACTGCAGTTGG+TGG 0.565768 5_2:+20387864 None:intergenic
GAGGTAACGGAGTTTGCCAT+CGG 0.574295 5_2:+20389348 None:intergenic
ATCCAAATTCTTGGGAGAGG+GGG 0.585902 5_2:+20387909 None:intergenic
AAATTCCTCTGTAGCTATGG+TGG 0.590401 5_2:-20389391 Msa0762340:CDS
GCATGTTTGATATCGCAGTA+GGG 0.590772 5_2:+20388525 None:intergenic
GACTGTGAATCATGGAAACA+TGG 0.591914 5_2:-20388801 Msa0762340:CDS
TCTGAGGTGCTAACTGCAGT+TGG 0.601570 5_2:+20387861 None:intergenic
TAGATTGATGAGATCTTCGT+CGG 0.604580 5_2:+20389084 None:intergenic
AATCCAAATTCTTGGGAGAG+GGG 0.604816 5_2:+20387908 None:intergenic
GCTTTGTTTGAAGATCTTGG+TGG 0.609304 5_2:+20388998 None:intergenic
TGAACGCATCGGTAAACTAC+AGG 0.609727 5_2:+20388839 None:intergenic
AAAGCGTCGAGGTCTTCAGC+AGG 0.612170 5_2:+20389121 None:intergenic
GAACCCAAACCTATCATGAT+CGG 0.613598 5_2:-20389454 Msa0762340:exon
TGAAGACGACGTTGATGACA+CGG 0.613599 5_2:+20388919 None:intergenic
TATAGCAGCCTTAATGGTGG+AGG 0.613879 5_2:-20388890 Msa0762340:CDS
GAGCGTAGCGTTATTGCCAG+TGG 0.616144 5_2:+20388687 None:intergenic
GATGGCAAACTCCGTTACCT+CGG 0.616199 5_2:-20389346 Msa0762340:CDS
TGTATGAAGGAAAGAGAGGA+AGG 0.627855 5_2:+20389542 None:intergenic
GCTACAGAGGAATTTGATGG+TGG 0.629406 5_2:+20389399 None:intergenic
AGTTAGCACCTCAGAATCGT+CGG 0.634908 5_2:-20387853 Msa0762340:three_prime_UTR
GGCAAACTCCGTTACCTCGG+TGG 0.637105 5_2:-20389343 Msa0762340:CDS
AAATTGGATAGAGCGATCGA+CGG 0.641093 5_2:+20389303 None:intergenic
CAAAATTATCTGATTCACAA+CGG 0.642368 5_2:-20388713 Msa0762340:CDS
GGGTTGAGTGAACTGTATGA+AGG 0.648357 5_2:+20389529 None:intergenic
AGGAGACAAATTCATTAACA+AGG 0.653399 5_2:+20388345 None:intergenic
TCGTATAGCAGCCTTAATGG+TGG 0.663823 5_2:-20388893 Msa0762340:CDS
TTTGACAGAGACGGTAACGG+AGG 0.663836 5_2:+20388968 None:intergenic
GGTAACGGAGTTTGCCATCG+GGG 0.665902 5_2:+20389350 None:intergenic
GAAACATGGAGAGATCGTCT+GGG 0.668852 5_2:-20388787 Msa0762340:CDS
GGATTTGGGAGAACCCGAAG+CGG 0.677084 5_2:+20389420 None:intergenic
ATTGATGAGATCTTCGTCGG+AGG 0.680364 5_2:+20389087 None:intergenic
CTGACAGCGAAGTTGCGTCA+CGG 0.682620 5_2:+20389147 None:intergenic
ACATGGAGAGATCGTCTGGG+AGG 0.686825 5_2:-20388784 Msa0762340:CDS
AAAGATGTACTTAATCTAGG+TGG 0.694669 5_2:+20388635 None:intergenic
TGATGGAAACCAAAGCGTCG+AGG 0.706223 5_2:+20389110 None:intergenic
TGAGATTGGTAACCGCTGCG+CGG 0.706718 5_2:+20388749 None:intergenic
AATGTTCCTCTACCGCGCAG+CGG 0.714104 5_2:-20388761 Msa0762340:CDS
GCAGCGGTTACCAATCTCAG+AGG 0.716821 5_2:-20388745 Msa0762340:CDS
GTGACATATGATGAACGCAT+CGG 0.728270 5_2:+20388828 None:intergenic
TTCCAGCCAGAAGTACACGA+CGG 0.748060 5_2:-20388867 Msa0762340:CDS
GAACGCGAGTATGGCCACCG+AGG 0.755415 5_2:+20389329 None:intergenic
AGACGACGTTGATGACACGG+AGG 0.790265 5_2:+20388922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAACATAAAAATTTTAG+GGG + chr5_2:20389161-20389180 None:intergenic 10.0%
!!! GTAAAAACATAAAAATTTTA+GGG + chr5_2:20389162-20389181 None:intergenic 10.0%
!!! TGTAAAAACATAAAAATTTT+AGG + chr5_2:20389163-20389182 None:intergenic 10.0%
!!! TACAACTTATTTTTTTTTTA+AGG - chr5_2:20389179-20389198 Msa0762340:CDS 10.0%
!!! TAAAAACATAAAAATTTTAG+GGG + chr5_2:20389161-20389180 None:intergenic 10.0%
!!! GTAAAAACATAAAAATTTTA+GGG + chr5_2:20389162-20389181 None:intergenic 10.0%
!!! TGTAAAAACATAAAAATTTT+AGG + chr5_2:20389163-20389182 None:intergenic 10.0%
!!! TACAACTTATTTTTTTTTTA+AGG - chr5_2:20389179-20389198 Msa0762340:CDS 10.0%
!! TGAATTTGAATTAAATTTCA+AGG - chr5_2:20388592-20388611 Msa0762340:three_prime_UTR 15.0%
!! GAATTTGAATTAAATTTCAA+GGG - chr5_2:20388593-20388612 Msa0762340:three_prime_UTR 15.0%
!! ATAATGAAAAATATGTATCA+AGG + chr5_2:20389053-20389072 None:intergenic 15.0%
!!! TTGATACATATTTTTCATTA+TGG - chr5_2:20389052-20389071 Msa0762340:CDS 15.0%
!!! AAAAACATAAAAATTTTAGG+GGG + chr5_2:20389160-20389179 None:intergenic 15.0%
!! TGAATTTGAATTAAATTTCA+AGG - chr5_2:20388592-20388611 Msa0762340:three_prime_UTR 15.0%
!! GAATTTGAATTAAATTTCAA+GGG - chr5_2:20388593-20388612 Msa0762340:three_prime_UTR 15.0%
!! ATAATGAAAAATATGTATCA+AGG + chr5_2:20389053-20389072 None:intergenic 15.0%
!!! TTGATACATATTTTTCATTA+TGG - chr5_2:20389052-20389071 Msa0762340:CDS 15.0%
!!! AAAAACATAAAAATTTTAGG+GGG + chr5_2:20389160-20389179 None:intergenic 15.0%
!! TTACATCTAATAATACTAAC+CGG + chr5_2:20387977-20387996 None:intergenic 20.0%
!!! AGAAGCATATAATGTTAATT+AGG - chr5_2:20388761-20388780 Msa0762340:CDS 20.0%
!! GAAGCATATAATGTTAATTA+GGG - chr5_2:20388762-20388781 Msa0762340:CDS 20.0%
!! TTAAATGAAGAAAAAAGAAG+AGG - chr5_2:20388812-20388831 Msa0762340:CDS 20.0%
!! GATATATTTGTGATGTAAAA+TGG - chr5_2:20388855-20388874 Msa0762340:CDS 20.0%
!!! TTGGTGGATTTTTTTATTTA+TGG - chr5_2:20388998-20389017 Msa0762340:CDS 20.0%
!!! TGGTGGATTTTTTTATTTAT+GGG - chr5_2:20388999-20389018 Msa0762340:CDS 20.0%
!!! ATTTTTTTATTTATGGGGAT+GGG - chr5_2:20389005-20389024 Msa0762340:CDS 20.0%
!!! AATATGTATCAAGGATTTTT+TGG + chr5_2:20389044-20389063 None:intergenic 20.0%
!!! TTTTAAGGATTTGTATAAGT+TGG - chr5_2:20389194-20389213 Msa0762340:intron 20.0%
!! TTACATCTAATAATACTAAC+CGG + chr5_2:20387977-20387996 None:intergenic 20.0%
!!! AGAAGCATATAATGTTAATT+AGG - chr5_2:20388761-20388780 Msa0762340:CDS 20.0%
!! GAAGCATATAATGTTAATTA+GGG - chr5_2:20388762-20388781 Msa0762340:CDS 20.0%
!! TTAAATGAAGAAAAAAGAAG+AGG - chr5_2:20388812-20388831 Msa0762340:CDS 20.0%
!! GATATATTTGTGATGTAAAA+TGG - chr5_2:20388855-20388874 Msa0762340:CDS 20.0%
!!! TTGGTGGATTTTTTTATTTA+TGG - chr5_2:20388998-20389017 Msa0762340:CDS 20.0%
!!! TGGTGGATTTTTTTATTTAT+GGG - chr5_2:20388999-20389018 Msa0762340:CDS 20.0%
!!! ATTTTTTTATTTATGGGGAT+GGG - chr5_2:20389005-20389024 Msa0762340:CDS 20.0%
!!! AATATGTATCAAGGATTTTT+TGG + chr5_2:20389044-20389063 None:intergenic 20.0%
!!! TTTTAAGGATTTGTATAAGT+TGG - chr5_2:20389194-20389213 Msa0762340:intron 20.0%
! AATAATACTAACCGGAAAAT+TGG + chr5_2:20387969-20387988 None:intergenic 25.0%
! CAAAATTATCTGATTCACAA+CGG - chr5_2:20388540-20388559 Msa0762340:three_prime_UTR 25.0%
! TCTTTGTATTACTATGATTC+TGG - chr5_2:20388702-20388721 Msa0762340:CDS 25.0%
! AAGATGACAGAAAATAGAAA+AGG + chr5_2:20388980-20388999 None:intergenic 25.0%
!! TTTTCTATTTTCTGTCATCT+TGG - chr5_2:20388979-20388998 Msa0762340:CDS 25.0%
!!! GGTGGATTTTTTTATTTATG+GGG - chr5_2:20389000-20389019 Msa0762340:CDS 25.0%
!!! GATTTTTTTATTTATGGGGA+TGG - chr5_2:20389004-20389023 Msa0762340:CDS 25.0%
! GTGAAAAATGTTACACAATA+TGG - chr5_2:20389262-20389281 Msa0762340:intron 25.0%
!! AATGTTACACAATATGGTTT+TGG - chr5_2:20389268-20389287 Msa0762340:intron 25.0%
!! TTTTCTACTCCATAAAGATT+TGG - chr5_2:20389309-20389328 Msa0762340:CDS 25.0%
! TATACCTAATCCAAATTCTT+GGG + chr5_2:20389355-20389374 None:intergenic 25.0%
! GATAGATGATTCAAAGTTTA+AGG - chr5_2:20389428-20389447 Msa0762340:CDS 25.0%
! AATAATACTAACCGGAAAAT+TGG + chr5_2:20387969-20387988 None:intergenic 25.0%
! CAAAATTATCTGATTCACAA+CGG - chr5_2:20388540-20388559 Msa0762340:three_prime_UTR 25.0%
! TCTTTGTATTACTATGATTC+TGG - chr5_2:20388702-20388721 Msa0762340:CDS 25.0%
! AAGATGACAGAAAATAGAAA+AGG + chr5_2:20388980-20388999 None:intergenic 25.0%
!! TTTTCTATTTTCTGTCATCT+TGG - chr5_2:20388979-20388998 Msa0762340:CDS 25.0%
!!! GGTGGATTTTTTTATTTATG+GGG - chr5_2:20389000-20389019 Msa0762340:CDS 25.0%
!!! GATTTTTTTATTTATGGGGA+TGG - chr5_2:20389004-20389023 Msa0762340:CDS 25.0%
! GTGAAAAATGTTACACAATA+TGG - chr5_2:20389262-20389281 Msa0762340:intron 25.0%
!! AATGTTACACAATATGGTTT+TGG - chr5_2:20389268-20389287 Msa0762340:intron 25.0%
!! TTTTCTACTCCATAAAGATT+TGG - chr5_2:20389309-20389328 Msa0762340:CDS 25.0%
! TATACCTAATCCAAATTCTT+GGG + chr5_2:20389355-20389374 None:intergenic 25.0%
! GATAGATGATTCAAAGTTTA+AGG - chr5_2:20389428-20389447 Msa0762340:CDS 25.0%
TAGAGATGAATTGTGTCTAT+GGG + chr5_2:20387747-20387766 None:intergenic 30.0%
TTAGAGATGAATTGTGTCTA+TGG + chr5_2:20387748-20387767 None:intergenic 30.0%
! ATGAAGGCTTTGATCTTTAA+CGG + chr5_2:20388231-20388250 None:intergenic 30.0%
AAAGATGTACTTAATCTAGG+TGG + chr5_2:20388621-20388640 None:intergenic 30.0%
ACCTAGATTAAGTACATCTT+TGG - chr5_2:20388620-20388639 Msa0762340:three_prime_UTR 30.0%
ACCAAAGATGTACTTAATCT+AGG + chr5_2:20388624-20388643 None:intergenic 30.0%
AGGAGACAAATTCATTAACA+AGG + chr5_2:20388911-20388930 None:intergenic 30.0%
! AGTTTTACACTTCTGATTTC+AGG - chr5_2:20389227-20389246 Msa0762340:intron 30.0%
CTATACCTAATCCAAATTCT+TGG + chr5_2:20389356-20389375 None:intergenic 30.0%
TAGAGATGAATTGTGTCTAT+GGG + chr5_2:20387747-20387766 None:intergenic 30.0%
TTAGAGATGAATTGTGTCTA+TGG + chr5_2:20387748-20387767 None:intergenic 30.0%
! ATGAAGGCTTTGATCTTTAA+CGG + chr5_2:20388231-20388250 None:intergenic 30.0%
AAAGATGTACTTAATCTAGG+TGG + chr5_2:20388621-20388640 None:intergenic 30.0%
ACCTAGATTAAGTACATCTT+TGG - chr5_2:20388620-20388639 Msa0762340:three_prime_UTR 30.0%
ACCAAAGATGTACTTAATCT+AGG + chr5_2:20388624-20388643 None:intergenic 30.0%
AGGAGACAAATTCATTAACA+AGG + chr5_2:20388911-20388930 None:intergenic 30.0%
! AGTTTTACACTTCTGATTTC+AGG - chr5_2:20389227-20389246 Msa0762340:intron 30.0%
CTATACCTAATCCAAATTCT+TGG + chr5_2:20389356-20389375 None:intergenic 30.0%
GTTTGAGAAAGGTTCAGTTT+AGG + chr5_2:20387772-20387791 None:intergenic 35.0%
!! AGGAATTTGATGGTGGATTT+GGG + chr5_2:20387850-20387869 None:intergenic 35.0%
ATAGCTACAGAGGAATTTGA+TGG + chr5_2:20387860-20387879 None:intergenic 35.0%
ATCAAATTCCTCTGTAGCTA+TGG - chr5_2:20387859-20387878 Msa0762340:three_prime_UTR 35.0%
TAGATTGATGAGATCTTCGT+CGG + chr5_2:20388172-20388191 None:intergenic 35.0%
TTGATCTTTAACGGTGATTG+TGG + chr5_2:20388222-20388241 None:intergenic 35.0%
!! GAAGCTTTGTTTGAAGATCT+TGG + chr5_2:20388261-20388280 None:intergenic 35.0%
GGAGAAAGAAAAAGTTGTGA+AGG - chr5_2:20388833-20388852 Msa0762340:CDS 35.0%
GTGATGTAAAATGGTTGAGA+AGG - chr5_2:20388864-20388883 Msa0762340:CDS 35.0%
AAAATGGTTGAGAAGGATTG+AGG - chr5_2:20388871-20388890 Msa0762340:CDS 35.0%
AATGGAGGCAAAAACGAAAA+AGG + chr5_2:20388931-20388950 None:intergenic 35.0%
ACTCACCATCACTACAAAAA+TGG + chr5_2:20388949-20388968 None:intergenic 35.0%
! TCTATTTTCTGTCATCTTGG+TGG - chr5_2:20388982-20389001 Msa0762340:CDS 35.0%
GAGGATAAGAGTGAGAATAT+AGG + chr5_2:20389109-20389128 None:intergenic 35.0%
AATTGCAACCGTGATTGAAA+GGG + chr5_2:20389135-20389154 None:intergenic 35.0%
AAATTGCAACCGTGATTGAA+AGG + chr5_2:20389136-20389155 None:intergenic 35.0%
TAATCCAAATTCTTGGGAGA+GGG + chr5_2:20389349-20389368 None:intergenic 35.0%
GTTTGAGAAAGGTTCAGTTT+AGG + chr5_2:20387772-20387791 None:intergenic 35.0%
!! AGGAATTTGATGGTGGATTT+GGG + chr5_2:20387850-20387869 None:intergenic 35.0%
ATAGCTACAGAGGAATTTGA+TGG + chr5_2:20387860-20387879 None:intergenic 35.0%
ATCAAATTCCTCTGTAGCTA+TGG - chr5_2:20387859-20387878 Msa0762340:three_prime_UTR 35.0%
TAGATTGATGAGATCTTCGT+CGG + chr5_2:20388172-20388191 None:intergenic 35.0%
TTGATCTTTAACGGTGATTG+TGG + chr5_2:20388222-20388241 None:intergenic 35.0%
!! GAAGCTTTGTTTGAAGATCT+TGG + chr5_2:20388261-20388280 None:intergenic 35.0%
GGAGAAAGAAAAAGTTGTGA+AGG - chr5_2:20388833-20388852 Msa0762340:CDS 35.0%
GTGATGTAAAATGGTTGAGA+AGG - chr5_2:20388864-20388883 Msa0762340:CDS 35.0%
AAAATGGTTGAGAAGGATTG+AGG - chr5_2:20388871-20388890 Msa0762340:CDS 35.0%
AATGGAGGCAAAAACGAAAA+AGG + chr5_2:20388931-20388950 None:intergenic 35.0%
ACTCACCATCACTACAAAAA+TGG + chr5_2:20388949-20388968 None:intergenic 35.0%
! TCTATTTTCTGTCATCTTGG+TGG - chr5_2:20388982-20389001 Msa0762340:CDS 35.0%
GAGGATAAGAGTGAGAATAT+AGG + chr5_2:20389109-20389128 None:intergenic 35.0%
AATTGCAACCGTGATTGAAA+GGG + chr5_2:20389135-20389154 None:intergenic 35.0%
AAATTGCAACCGTGATTGAA+AGG + chr5_2:20389136-20389155 None:intergenic 35.0%
TAATCCAAATTCTTGGGAGA+GGG + chr5_2:20389349-20389368 None:intergenic 35.0%
TGTATGAAGGAAAGAGAGGA+AGG + chr5_2:20387714-20387733 None:intergenic 40.0%
GAACTGTATGAAGGAAAGAG+AGG + chr5_2:20387718-20387737 None:intergenic 40.0%
! GATCATGATAGGTTTGGGTT+CGG + chr5_2:20387800-20387819 None:intergenic 40.0%
GAACCCAAACCTATCATGAT+CGG - chr5_2:20387799-20387818 Msa0762340:three_prime_UTR 40.0%
AGTCCGATCATGATAGGTTT+GGG + chr5_2:20387805-20387824 None:intergenic 40.0%
!! GAGGAATTTGATGGTGGATT+TGG + chr5_2:20387851-20387870 None:intergenic 40.0%
AAATTCCTCTGTAGCTATGG+TGG - chr5_2:20387862-20387881 Msa0762340:three_prime_UTR 40.0%
AAATTGGATAGAGCGATCGA+CGG + chr5_2:20387953-20387972 None:intergenic 40.0%
! GATCGCTCTATCCAATTTTC+CGG - chr5_2:20387955-20387974 Msa0762340:three_prime_UTR 40.0%
TACAGAACTGCTATTGAAGC+TGG - chr5_2:20388065-20388084 Msa0762340:intron 40.0%
AGATCTTGGTGGAGAAATGA+AGG + chr5_2:20388247-20388266 None:intergenic 40.0%
!! GCTTTGTTTGAAGATCTTGG+TGG + chr5_2:20388258-20388277 None:intergenic 40.0%
!! GATTTTGACAGAGACGGTAA+CGG + chr5_2:20388291-20388310 None:intergenic 40.0%
!!! GATGCTGATTTTGACAGAGA+CGG + chr5_2:20388297-20388316 None:intergenic 40.0%
TCATCGTATAGCAGCCTTAA+TGG - chr5_2:20388357-20388376 Msa0762340:three_prime_UTR 40.0%
GTGACATATGATGAACGCAT+CGG + chr5_2:20388428-20388447 None:intergenic 40.0%
GACTGTGAATCATGGAAACA+TGG - chr5_2:20388452-20388471 Msa0762340:three_prime_UTR 40.0%
GCATGTTTGATATCGCAGTA+GGG + chr5_2:20388731-20388750 None:intergenic 40.0%
TGCATGTTTGATATCGCAGT+AGG + chr5_2:20388732-20388751 None:intergenic 40.0%
!! TGCCTCCATTTTTGTAGTGA+TGG - chr5_2:20388941-20388960 Msa0762340:CDS 40.0%
CACCATCACTACAAAAATGG+AGG + chr5_2:20388946-20388965 None:intergenic 40.0%
ATGTTCGTCTTCTTGTGCTT+TGG - chr5_2:20389077-20389096 Msa0762340:CDS 40.0%
ATTGCAACCGTGATTGAAAG+GGG + chr5_2:20389134-20389153 None:intergenic 40.0%
AATCCAAATTCTTGGGAGAG+GGG + chr5_2:20389348-20389367 None:intergenic 40.0%
CTAATCCAAATTCTTGGGAG+AGG + chr5_2:20389350-20389369 None:intergenic 40.0%
CTCTCCCAAGAATTTGGATT+AGG - chr5_2:20389348-20389367 Msa0762340:CDS 40.0%
TGTATGAAGGAAAGAGAGGA+AGG + chr5_2:20387714-20387733 None:intergenic 40.0%
GAACTGTATGAAGGAAAGAG+AGG + chr5_2:20387718-20387737 None:intergenic 40.0%
! GATCATGATAGGTTTGGGTT+CGG + chr5_2:20387800-20387819 None:intergenic 40.0%
GAACCCAAACCTATCATGAT+CGG - chr5_2:20387799-20387818 Msa0762340:three_prime_UTR 40.0%
AGTCCGATCATGATAGGTTT+GGG + chr5_2:20387805-20387824 None:intergenic 40.0%
!! GAGGAATTTGATGGTGGATT+TGG + chr5_2:20387851-20387870 None:intergenic 40.0%
AAATTCCTCTGTAGCTATGG+TGG - chr5_2:20387862-20387881 Msa0762340:three_prime_UTR 40.0%
AAATTGGATAGAGCGATCGA+CGG + chr5_2:20387953-20387972 None:intergenic 40.0%
! GATCGCTCTATCCAATTTTC+CGG - chr5_2:20387955-20387974 Msa0762340:three_prime_UTR 40.0%
TACAGAACTGCTATTGAAGC+TGG - chr5_2:20388065-20388084 Msa0762340:intron 40.0%
AGATCTTGGTGGAGAAATGA+AGG + chr5_2:20388247-20388266 None:intergenic 40.0%
!! GCTTTGTTTGAAGATCTTGG+TGG + chr5_2:20388258-20388277 None:intergenic 40.0%
!! GATTTTGACAGAGACGGTAA+CGG + chr5_2:20388291-20388310 None:intergenic 40.0%
!!! GATGCTGATTTTGACAGAGA+CGG + chr5_2:20388297-20388316 None:intergenic 40.0%
TCATCGTATAGCAGCCTTAA+TGG - chr5_2:20388357-20388376 Msa0762340:three_prime_UTR 40.0%
GTGACATATGATGAACGCAT+CGG + chr5_2:20388428-20388447 None:intergenic 40.0%
GACTGTGAATCATGGAAACA+TGG - chr5_2:20388452-20388471 Msa0762340:three_prime_UTR 40.0%
GCATGTTTGATATCGCAGTA+GGG + chr5_2:20388731-20388750 None:intergenic 40.0%
TGCATGTTTGATATCGCAGT+AGG + chr5_2:20388732-20388751 None:intergenic 40.0%
!! TGCCTCCATTTTTGTAGTGA+TGG - chr5_2:20388941-20388960 Msa0762340:CDS 40.0%
CACCATCACTACAAAAATGG+AGG + chr5_2:20388946-20388965 None:intergenic 40.0%
ATGTTCGTCTTCTTGTGCTT+TGG - chr5_2:20389077-20389096 Msa0762340:CDS 40.0%
ATTGCAACCGTGATTGAAAG+GGG + chr5_2:20389134-20389153 None:intergenic 40.0%
AATCCAAATTCTTGGGAGAG+GGG + chr5_2:20389348-20389367 None:intergenic 40.0%
CTAATCCAAATTCTTGGGAG+AGG + chr5_2:20389350-20389369 None:intergenic 40.0%
CTCTCCCAAGAATTTGGATT+AGG - chr5_2:20389348-20389367 Msa0762340:CDS 40.0%
!! AGGTGCTGTGGATTTTGGTA+TGG + chr5_2:20387694-20387713 None:intergenic 45.0%
GGGTTGAGTGAACTGTATGA+AGG + chr5_2:20387727-20387746 None:intergenic 45.0%
! GTTCGGATTCGGTTTGAGAA+AGG + chr5_2:20387783-20387802 None:intergenic 45.0%
! GATAGGTTTGGGTTCGGATT+CGG + chr5_2:20387794-20387813 None:intergenic 45.0%
GAGTCCGATCATGATAGGTT+TGG + chr5_2:20387806-20387825 None:intergenic 45.0%
GCTACAGAGGAATTTGATGG+TGG + chr5_2:20387857-20387876 None:intergenic 45.0%
! TTTTGCCACCATAGCTACAG+AGG + chr5_2:20387870-20387889 None:intergenic 45.0%
ATTGATGAGATCTTCGTCGG+AGG + chr5_2:20388169-20388188 None:intergenic 45.0%
!! TGAAGACGACGTTGATGACA+CGG + chr5_2:20388337-20388356 None:intergenic 45.0%
TCGTATAGCAGCCTTAATGG+TGG - chr5_2:20388360-20388379 Msa0762340:three_prime_UTR 45.0%
TATAGCAGCCTTAATGGTGG+AGG - chr5_2:20388363-20388382 Msa0762340:three_prime_UTR 45.0%
! TGAACGCATCGGTAAACTAC+AGG + chr5_2:20388417-20388436 None:intergenic 45.0%
TCACAGCAGACTGTGAATCA+TGG - chr5_2:20388444-20388463 Msa0762340:three_prime_UTR 45.0%
GAAACATGGAGAGATCGTCT+GGG - chr5_2:20388466-20388485 Msa0762340:three_prime_UTR 45.0%
! TGGGGATGGGTTTAGTTTCA+TGG - chr5_2:20389018-20389037 Msa0762340:CDS 45.0%
GTCTTCTTGTGCTTTGGCTA+TGG - chr5_2:20389083-20389102 Msa0762340:CDS 45.0%
TCCTCTTCCCCTTTCAATCA+CGG - chr5_2:20389124-20389143 Msa0762340:CDS 45.0%
AGTGGGCAGCCAAATCTTTA+TGG + chr5_2:20389321-20389340 None:intergenic 45.0%
ATCCAAATTCTTGGGAGAGG+GGG + chr5_2:20389347-20389366 None:intergenic 45.0%
AGTTAGCACCTCAGAATCGT+CGG - chr5_2:20389400-20389419 Msa0762340:CDS 45.0%
ATCCTTATCCGACGATTCTG+AGG + chr5_2:20389411-20389430 None:intergenic 45.0%
!! AGGTGCTGTGGATTTTGGTA+TGG + chr5_2:20387694-20387713 None:intergenic 45.0%
GGGTTGAGTGAACTGTATGA+AGG + chr5_2:20387727-20387746 None:intergenic 45.0%
! GTTCGGATTCGGTTTGAGAA+AGG + chr5_2:20387783-20387802 None:intergenic 45.0%
! GATAGGTTTGGGTTCGGATT+CGG + chr5_2:20387794-20387813 None:intergenic 45.0%
GAGTCCGATCATGATAGGTT+TGG + chr5_2:20387806-20387825 None:intergenic 45.0%
GCTACAGAGGAATTTGATGG+TGG + chr5_2:20387857-20387876 None:intergenic 45.0%
! TTTTGCCACCATAGCTACAG+AGG + chr5_2:20387870-20387889 None:intergenic 45.0%
ATTGATGAGATCTTCGTCGG+AGG + chr5_2:20388169-20388188 None:intergenic 45.0%
!! TGAAGACGACGTTGATGACA+CGG + chr5_2:20388337-20388356 None:intergenic 45.0%
TCGTATAGCAGCCTTAATGG+TGG - chr5_2:20388360-20388379 Msa0762340:three_prime_UTR 45.0%
TATAGCAGCCTTAATGGTGG+AGG - chr5_2:20388363-20388382 Msa0762340:three_prime_UTR 45.0%
! TGAACGCATCGGTAAACTAC+AGG + chr5_2:20388417-20388436 None:intergenic 45.0%
TCACAGCAGACTGTGAATCA+TGG - chr5_2:20388444-20388463 Msa0762340:three_prime_UTR 45.0%
GAAACATGGAGAGATCGTCT+GGG - chr5_2:20388466-20388485 Msa0762340:three_prime_UTR 45.0%
! TGGGGATGGGTTTAGTTTCA+TGG - chr5_2:20389018-20389037 Msa0762340:CDS 45.0%
GTCTTCTTGTGCTTTGGCTA+TGG - chr5_2:20389083-20389102 Msa0762340:CDS 45.0%
TCCTCTTCCCCTTTCAATCA+CGG - chr5_2:20389124-20389143 Msa0762340:CDS 45.0%
AGTGGGCAGCCAAATCTTTA+TGG + chr5_2:20389321-20389340 None:intergenic 45.0%
ATCCAAATTCTTGGGAGAGG+GGG + chr5_2:20389347-20389366 None:intergenic 45.0%
AGTTAGCACCTCAGAATCGT+CGG - chr5_2:20389400-20389419 Msa0762340:CDS 45.0%
ATCCTTATCCGACGATTCTG+AGG + chr5_2:20389411-20389430 None:intergenic 45.0%
!!! GAGGAAGGTGCTGTGGATTT+TGG + chr5_2:20387699-20387718 None:intergenic 50.0%
TCGGAGAGTCCGATCATGAT+AGG + chr5_2:20387811-20387830 None:intergenic 50.0%
!! AGGTAACGGAGTTTGCCATC+GGG + chr5_2:20387907-20387926 None:intergenic 50.0%
!! GAGGTAACGGAGTTTGCCAT+CGG + chr5_2:20387908-20387927 None:intergenic 50.0%
GATGGCAAACTCCGTTACCT+CGG - chr5_2:20387907-20387926 Msa0762340:three_prime_UTR 50.0%
!! TGATGGAAACCAAAGCGTCG+AGG + chr5_2:20388146-20388165 None:intergenic 50.0%
! TTTGACAGAGACGGTAACGG+AGG + chr5_2:20388288-20388307 None:intergenic 50.0%
! TTCCAGCCAGAAGTACACGA+CGG - chr5_2:20388386-20388405 Msa0762340:three_prime_UTR 50.0%
GGAAACATGGAGAGATCGTC+TGG - chr5_2:20388465-20388484 Msa0762340:three_prime_UTR 50.0%
!! GATCAGCGTTCCTCTGAGAT+TGG + chr5_2:20388521-20388540 None:intergenic 50.0%
TGATTCACAACGGCAACCAC+TGG - chr5_2:20388550-20388569 Msa0762340:three_prime_UTR 50.0%
ACCGTGATTGAAAGGGGAAG+AGG + chr5_2:20389128-20389147 None:intergenic 50.0%
! TCTGAGGTGCTAACTGCAGT+TGG + chr5_2:20389395-20389414 None:intergenic 50.0%
CACCTCAGAATCGTCGGATA+AGG - chr5_2:20389406-20389425 Msa0762340:CDS 50.0%
!!! GAGGAAGGTGCTGTGGATTT+TGG + chr5_2:20387699-20387718 None:intergenic 50.0%
TCGGAGAGTCCGATCATGAT+AGG + chr5_2:20387811-20387830 None:intergenic 50.0%
!! AGGTAACGGAGTTTGCCATC+GGG + chr5_2:20387907-20387926 None:intergenic 50.0%
!! GAGGTAACGGAGTTTGCCAT+CGG + chr5_2:20387908-20387927 None:intergenic 50.0%
GATGGCAAACTCCGTTACCT+CGG - chr5_2:20387907-20387926 Msa0762340:three_prime_UTR 50.0%
!! TGATGGAAACCAAAGCGTCG+AGG + chr5_2:20388146-20388165 None:intergenic 50.0%
! TTTGACAGAGACGGTAACGG+AGG + chr5_2:20388288-20388307 None:intergenic 50.0%
! TTCCAGCCAGAAGTACACGA+CGG - chr5_2:20388386-20388405 Msa0762340:three_prime_UTR 50.0%
GGAAACATGGAGAGATCGTC+TGG - chr5_2:20388465-20388484 Msa0762340:three_prime_UTR 50.0%
!! GATCAGCGTTCCTCTGAGAT+TGG + chr5_2:20388521-20388540 None:intergenic 50.0%
TGATTCACAACGGCAACCAC+TGG - chr5_2:20388550-20388569 Msa0762340:three_prime_UTR 50.0%
ACCGTGATTGAAAGGGGAAG+AGG + chr5_2:20389128-20389147 None:intergenic 50.0%
! TCTGAGGTGCTAACTGCAGT+TGG + chr5_2:20389395-20389414 None:intergenic 50.0%
CACCTCAGAATCGTCGGATA+AGG - chr5_2:20389406-20389425 Msa0762340:CDS 50.0%
!! GGAAAGAGAGGAAGGTGCTG+TGG + chr5_2:20387706-20387725 None:intergenic 55.0%
GATTTGGGAGAACCCGAAGC+GGG + chr5_2:20387835-20387854 None:intergenic 55.0%
GGATTTGGGAGAACCCGAAG+CGG + chr5_2:20387836-20387855 None:intergenic 55.0%
!! GGTAACGGAGTTTGCCATCG+GGG + chr5_2:20387906-20387925 None:intergenic 55.0%
GAGTATGGCCACCGAGGTAA+CGG + chr5_2:20387921-20387940 None:intergenic 55.0%
CTGACAGCGAAGTTGCGTCA+CGG + chr5_2:20388109-20388128 None:intergenic 55.0%
!! AAAGCGTCGAGGTCTTCAGC+AGG + chr5_2:20388135-20388154 None:intergenic 55.0%
TGCTGAAGACCTCGACGCTT+TGG - chr5_2:20388134-20388153 Msa0762340:intron 55.0%
GAGATCTTCGTCGGAGGTGA+TGG + chr5_2:20388163-20388182 None:intergenic 55.0%
!! AGACGACGTTGATGACACGG+AGG + chr5_2:20388334-20388353 None:intergenic 55.0%
GGCTGGAACCTCCACCATTA+AGG + chr5_2:20388374-20388393 None:intergenic 55.0%
TTCCGTCGTGTACTTCTGGC+TGG + chr5_2:20388391-20388410 None:intergenic 55.0%
GCTGTTCCGTCGTGTACTTC+TGG + chr5_2:20388395-20388414 None:intergenic 55.0%
ACATGGAGAGATCGTCTGGG+AGG - chr5_2:20388469-20388488 Msa0762340:three_prime_UTR 55.0%
AATGTTCCTCTACCGCGCAG+CGG - chr5_2:20388492-20388511 Msa0762340:three_prime_UTR 55.0%
! TGAGATTGGTAACCGCTGCG+CGG + chr5_2:20388507-20388526 None:intergenic 55.0%
GCAGCGGTTACCAATCTCAG+AGG - chr5_2:20388508-20388527 Msa0762340:three_prime_UTR 55.0%
GAGCGTAGCGTTATTGCCAG+TGG + chr5_2:20388569-20388588 None:intergenic 55.0%
CAAATTCTTGGGAGAGGGGG+TGG + chr5_2:20389344-20389363 None:intergenic 55.0%
CACCCCCTCTCCCAAGAATT+TGG - chr5_2:20389342-20389361 Msa0762340:CDS 55.0%
! GAGGTGCTAACTGCAGTTGG+TGG + chr5_2:20389392-20389411 None:intergenic 55.0%
!! GGAAAGAGAGGAAGGTGCTG+TGG + chr5_2:20387706-20387725 None:intergenic 55.0%
GATTTGGGAGAACCCGAAGC+GGG + chr5_2:20387835-20387854 None:intergenic 55.0%
GGATTTGGGAGAACCCGAAG+CGG + chr5_2:20387836-20387855 None:intergenic 55.0%
!! GGTAACGGAGTTTGCCATCG+GGG + chr5_2:20387906-20387925 None:intergenic 55.0%
GAGTATGGCCACCGAGGTAA+CGG + chr5_2:20387921-20387940 None:intergenic 55.0%
CTGACAGCGAAGTTGCGTCA+CGG + chr5_2:20388109-20388128 None:intergenic 55.0%
!! AAAGCGTCGAGGTCTTCAGC+AGG + chr5_2:20388135-20388154 None:intergenic 55.0%
TGCTGAAGACCTCGACGCTT+TGG - chr5_2:20388134-20388153 Msa0762340:intron 55.0%
GAGATCTTCGTCGGAGGTGA+TGG + chr5_2:20388163-20388182 None:intergenic 55.0%
!! AGACGACGTTGATGACACGG+AGG + chr5_2:20388334-20388353 None:intergenic 55.0%
GGCTGGAACCTCCACCATTA+AGG + chr5_2:20388374-20388393 None:intergenic 55.0%
TTCCGTCGTGTACTTCTGGC+TGG + chr5_2:20388391-20388410 None:intergenic 55.0%
GCTGTTCCGTCGTGTACTTC+TGG + chr5_2:20388395-20388414 None:intergenic 55.0%
ACATGGAGAGATCGTCTGGG+AGG - chr5_2:20388469-20388488 Msa0762340:three_prime_UTR 55.0%
AATGTTCCTCTACCGCGCAG+CGG - chr5_2:20388492-20388511 Msa0762340:three_prime_UTR 55.0%
! TGAGATTGGTAACCGCTGCG+CGG + chr5_2:20388507-20388526 None:intergenic 55.0%
GCAGCGGTTACCAATCTCAG+AGG - chr5_2:20388508-20388527 Msa0762340:three_prime_UTR 55.0%
GAGCGTAGCGTTATTGCCAG+TGG + chr5_2:20388569-20388588 None:intergenic 55.0%
CAAATTCTTGGGAGAGGGGG+TGG + chr5_2:20389344-20389363 None:intergenic 55.0%
CACCCCCTCTCCCAAGAATT+TGG - chr5_2:20389342-20389361 Msa0762340:CDS 55.0%
! GAGGTGCTAACTGCAGTTGG+TGG + chr5_2:20389392-20389411 None:intergenic 55.0%
AGTTTGCCATCGGGGTAGCG+GGG + chr5_2:20387898-20387917 None:intergenic 60.0%
GAGTTTGCCATCGGGGTAGC+GGG + chr5_2:20387899-20387918 None:intergenic 60.0%
GGAGTTTGCCATCGGGGTAG+CGG + chr5_2:20387900-20387919 None:intergenic 60.0%
GGCAAACTCCGTTACCTCGG+TGG - chr5_2:20387910-20387929 Msa0762340:three_prime_UTR 60.0%
CGACGGAGAGAACGCGAGTA+TGG + chr5_2:20387936-20387955 None:intergenic 60.0%
AGTTTGCCATCGGGGTAGCG+GGG + chr5_2:20387898-20387917 None:intergenic 60.0%
GAGTTTGCCATCGGGGTAGC+GGG + chr5_2:20387899-20387918 None:intergenic 60.0%
GGAGTTTGCCATCGGGGTAG+CGG + chr5_2:20387900-20387919 None:intergenic 60.0%
GGCAAACTCCGTTACCTCGG+TGG - chr5_2:20387910-20387929 Msa0762340:three_prime_UTR 60.0%
CGACGGAGAGAACGCGAGTA+TGG + chr5_2:20387936-20387955 None:intergenic 60.0%
CGGACTCTCCGAACCCGCTT+CGG - chr5_2:20387819-20387838 Msa0762340:three_prime_UTR 65.0%
GGACTCTCCGAACCCGCTTC+GGG - chr5_2:20387820-20387839 Msa0762340:three_prime_UTR 65.0%
! GGGAGAACCCGAAGCGGGTT+CGG + chr5_2:20387830-20387849 None:intergenic 65.0%
! GTTTGCCATCGGGGTAGCGG+GGG + chr5_2:20387897-20387916 None:intergenic 65.0%
GAACGCGAGTATGGCCACCG+AGG + chr5_2:20387927-20387946 None:intergenic 65.0%
TGGTAACCGCTGCGCGGTAG+AGG + chr5_2:20388501-20388520 None:intergenic 65.0%
CTTGGGAGAGGGGGTGGAGT+GGG + chr5_2:20389338-20389357 None:intergenic 65.0%
TCTTGGGAGAGGGGGTGGAG+TGG + chr5_2:20389339-20389358 None:intergenic 65.0%
CGGACTCTCCGAACCCGCTT+CGG - chr5_2:20387819-20387838 Msa0762340:three_prime_UTR 65.0%
GGACTCTCCGAACCCGCTTC+GGG - chr5_2:20387820-20387839 Msa0762340:three_prime_UTR 65.0%
! GGGAGAACCCGAAGCGGGTT+CGG + chr5_2:20387830-20387849 None:intergenic 65.0%
! GTTTGCCATCGGGGTAGCGG+GGG + chr5_2:20387897-20387916 None:intergenic 65.0%
GAACGCGAGTATGGCCACCG+AGG + chr5_2:20387927-20387946 None:intergenic 65.0%
TGGTAACCGCTGCGCGGTAG+AGG + chr5_2:20388501-20388520 None:intergenic 65.0%
CTTGGGAGAGGGGGTGGAGT+GGG + chr5_2:20389338-20389357 None:intergenic 65.0%
TCTTGGGAGAGGGGGTGGAG+TGG + chr5_2:20389339-20389358 None:intergenic 65.0%
ATCCTCCCCCGCTACCCCGA+TGG - chr5_2:20387889-20387908 Msa0762340:three_prime_UTR 70.0%
ATCCTCCCCCGCTACCCCGA+TGG - chr5_2:20387889-20387908 Msa0762340:three_prime_UTR 70.0%
!! TGCCATCGGGGTAGCGGGGG+AGG + chr5_2:20387894-20387913 None:intergenic 75.0%
!! TGCCATCGGGGTAGCGGGGG+AGG + chr5_2:20387894-20387913 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 20387684 20389591 20387684 ID=Msa0762340;Name=Msa0762340
chr5_2 mRNA 20387684 20389591 20387684 ID=Msa0762340-mRNA-1;Parent=Msa0762340;Name=Msa0762340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130|1|1|1|0.5|0.33|3|727|223
chr5_2 exon 20387684 20388026 20387684 ID=Msa0762340-mRNA-1:exon:8598;Parent=Msa0762340-mRNA-1
chr5_2 exon 20388313 20389205 20388313 ID=Msa0762340-mRNA-1:exon:8597;Parent=Msa0762340-mRNA-1
chr5_2 exon 20389299 20389591 20389299 ID=Msa0762340-mRNA-1:exon:8596;Parent=Msa0762340-mRNA-1
chr5_2 five_prime_UTR 20389462 20389591 20389462 ID=Msa0762340-mRNA-1:five_prime_utr;Parent=Msa0762340-mRNA-1
chr5_2 CDS 20389299 20389461 20389299 ID=Msa0762340-mRNA-1:cds;Parent=Msa0762340-mRNA-1
chr5_2 CDS 20388697 20389205 20388697 ID=Msa0762340-mRNA-1:cds;Parent=Msa0762340-mRNA-1
chr5_2 three_prime_UTR 20388313 20388696 20388313 ID=Msa0762340-mRNA-1:three_prime_utr;Parent=Msa0762340-mRNA-1
chr5_2 three_prime_UTR 20387684 20388026 20387684 ID=Msa0762340-mRNA-1:three_prime_utr;Parent=Msa0762340-mRNA-1
Gene Sequence

>Msa0762340

ATGATCGGACTCTCCGAACCCGCTTCGGGTTCTCCCAAATCCACCATCAAATTCCTCTGTAGCTATGGTGGCAAAATCCTCCCCCGCTACCCCGATGGCAAACTCCGTTACCTCGGTGGCCATACTCGCGTTCTCTCCGTCGATCGCTCTATCCAATTTTCCGAACTGCTATTGAAGCTGGAAGAGCTCTGCAGTTCATCCGTGACGCAACTTCGCTGTCAGTTACCTGCTGAAGACCTCGACGCTTTGGTTTCCATCACCTCCGACGAAGATCTCATCAATCTAATCGAAGAATACGATCGTACAGCATCACCACAATCACCGTTAAAGATCAAAGCCTTCATTTCTCCACCAAGATCTTCAAACAAAGCTTCTAAACCTCCGTTACCGTCTCTGTCAAAATCAGCATCTGTCTCTTCATCATCCTCCGTGTCATCAACGTCGTCTTCATCATCGTATAGCAGCCTTAATGGTGGAGGTTCCAGCCAGAAGTACACGACGGAACAGCCTGTAGTTTACCGATGCGTTCATCATATGTCACAGCAGACTGTGAATCATGGAAACATGGAGAGATCGTCTGGGAGGAATGTTCCTCTACCGCGCAGCGGTTACCAATCTCAGAGGAACGCTGATCAAAATTATCTGATTCACAACGGCAACCACTGGCAATAA
Protein sequence

>Msa0762340

MIGLSEPASGSPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSVDRSIQFSELLLKLEELCSSSVTQLRCQLPAEDLDALVSITSDEDLINLIEEYDRTASPQSPLKIKAFISPPRSSNKASKPPLPSLSKSASVSSSSSVSSTSSSSSYSSLNGGGSSQKYTTEQPVVYRCVHHMSQQTVNHGNMERSSGRNVPLPRSGYQSQRNADQNYLIHNGNHWQ*