AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482810 MtrunA17_Chr5g0412711 94.170 223 13 0 1 223 1 223 1.61e-130 367
Msa0482810 MtrunA17_Chr4g0058551 67.257 113 35 2 12 123 5 116 8.80e-44 145
Msa0482810 MtrunA17_Chr3g0117061 66.087 115 37 2 12 125 5 118 1.90e-43 145
Msa0482810 MtrunA17_Chr4g0048541 41.781 146 72 2 16 159 29 163 3.36e-31 118
Msa0482810 MtrunA17_Chr2g0277031 49.533 107 52 2 11 117 8 112 2.74e-29 111
Msa0482810 MtrunA17_Chr4g0049441 47.414 116 56 3 17 127 40 155 5.93e-28 109
Msa0482810 MtrunA17_Chr6g0461841 51.961 102 48 1 16 117 191 291 9.43e-28 110
Msa0482810 MtrunA17_Chr2g0279951 47.000 100 52 1 17 115 45 144 5.51e-27 107
Msa0482810 MtrunA17_Chr1g0196631 45.370 108 58 1 8 115 186 292 2.01e-25 103
Msa0482810 MtrunA17_Chr4g0065211 47.115 104 52 2 16 117 152 254 2.82e-25 103
Msa0482810 MtrunA17_Chr2g0310781 47.000 100 52 1 16 115 151 249 7.12e-25 102
Msa0482810 MtrunA17_Chr2g0305141 51.163 86 41 1 16 101 171 255 2.42e-24 100
Msa0482810 MtrunA17_Chr2g0310761 47.000 100 52 1 16 115 169 267 3.06e-24 100
Msa0482810 MtrunA17_Chr1g0209151 42.857 119 64 2 14 128 53 171 1.17e-23 98.6
Msa0482810 MtrunA17_Chr6g0483611 48.000 100 51 1 12 110 55 154 3.00e-23 97.4
Msa0482810 MtrunA17_Chr8g0357611 46.000 100 53 1 16 115 179 277 3.41e-22 94.7
Msa0482810 MtrunA17_Chr5g0428011 40.708 113 63 3 14 123 25 136 8.26e-22 92.0
Msa0482810 MtrunA17_Chr4g0072741 47.748 111 57 1 5 115 41 150 1.04e-21 93.2
Msa0482810 MtrunA17_Chr5g0440771 38.519 135 70 5 16 144 4 131 4.50e-20 84.3
Msa0482810 MtrunA17_Chr8g0392371 45.652 92 46 2 12 101 49 138 2.36e-19 86.3
Msa0482810 MtrunA17_Chr5g0428071 38.525 122 68 5 7 125 36 153 2.63e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482810 AT3G26510.1 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT3G26510.4 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT3G26510.3 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT3G26510.2 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT3G26510.6 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT3G26510.5 49.537 216 76 5 14 223 8 196 1.93e-53 171
Msa0482810 AT1G70640.1 63.889 108 37 1 14 121 6 111 4.63e-44 145
Msa0482810 AT3G48240.1 60.748 107 37 2 13 119 11 112 1.00e-39 135
Msa0482810 AT5G63130.1 59.350 123 42 3 2 124 4 118 4.17e-36 126
Msa0482810 AT5G63130.2 59.350 123 42 3 2 124 4 118 4.17e-36 126
Msa0482810 AT1G04700.3 39.310 145 83 3 15 158 121 261 3.35e-28 112
Msa0482810 AT1G04700.1 39.310 145 83 3 15 158 121 261 3.92e-28 112
Msa0482810 AT1G04700.2 39.310 145 83 3 15 158 121 261 3.92e-28 112
Msa0482810 AT5G57610.1 49.000 100 50 1 16 115 24 122 4.45e-27 108
Msa0482810 AT4G05150.1 45.098 102 54 1 16 115 59 160 6.99e-27 107
Msa0482810 AT5G49920.1 48.077 104 49 2 14 117 8 106 2.75e-26 103
Msa0482810 AT2G35050.1 51.579 95 45 1 4 98 165 258 2.54e-25 103
Msa0482810 AT2G35050.2 51.579 95 45 1 4 98 165 258 2.54e-25 103
Msa0482810 AT1G79570.4 46.296 108 57 1 8 115 169 275 3.02e-25 103
Msa0482810 AT1G79570.5 46.296 108 57 1 8 115 169 275 3.02e-25 103
Msa0482810 AT1G79570.3 46.296 108 57 1 8 115 169 275 3.07e-25 103
Msa0482810 AT1G79570.2 46.296 108 57 1 8 115 169 275 3.48e-25 103
Msa0482810 AT1G79570.1 46.296 108 57 1 8 115 169 275 3.48e-25 103
Msa0482810 AT2G01190.1 47.170 106 52 2 14 115 73 178 1.35e-24 101
Msa0482810 AT5G09620.1 44.860 107 54 2 16 117 40 146 2.10e-24 100
Msa0482810 AT5G09620.2 44.860 107 54 2 16 117 40 146 2.12e-24 100
Msa0482810 AT5G64430.1 45.370 108 53 2 16 117 45 152 3.28e-24 100
Msa0482810 AT3G26510.7 40.113 177 73 5 53 223 69 218 4.73e-24 95.9
Msa0482810 AT1G16270.1 45.098 102 55 1 14 115 163 263 1.93e-23 98.6
Msa0482810 AT1G16270.2 45.098 102 55 1 14 115 163 263 1.93e-23 98.6
Msa0482810 AT1G16270.3 45.098 102 55 1 14 115 163 263 1.93e-23 98.6
Msa0482810 AT3G46920.2 50.000 86 42 1 16 101 75 159 2.53e-23 98.2
Msa0482810 AT3G46920.1 50.000 86 42 1 16 101 9 93 3.25e-23 97.8
Msa0482810 AT3G24715.1 33.858 127 83 1 16 142 176 301 1.76e-22 95.9
Msa0482810 AT3G24715.3 33.858 127 83 1 16 142 176 301 1.76e-22 95.9
Msa0482810 AT3G24715.2 33.858 127 83 1 16 142 176 301 1.76e-22 95.9
Msa0482810 AT3G18230.1 47.000 100 52 1 3 101 51 150 8.98e-21 90.5
Msa0482810 AT1G25300.1 38.835 103 58 2 16 117 11 109 4.26e-17 78.2

Find 103 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCATATAATGTTAATT+AGG 0.191647 3_3:+90311546 Msa0482810:three_prime_UTR
GAGGAAGGTGCTGTGGATTT+TGG 0.201575 3_3:-90310481 None:intergenic
GAGGAATTTGATGGTGGATT+TGG 0.216069 3_3:-90310633 None:intergenic
AATAATACTAACCGGAAAAT+TGG 0.236150 3_3:-90310751 None:intergenic
TCTTTGTATTACTATGATTC+TGG 0.260819 3_3:+90311487 Msa0482810:three_prime_UTR
GATATATTTGTGATGTAAAA+TGG 0.274395 3_3:+90311640 Msa0482810:three_prime_UTR
AGGAATTTGATGGTGGATTT+GGG 0.286191 3_3:-90310632 None:intergenic
TCATCGTATAGCAGCCTTAA+TGG 0.287086 3_3:+90311142 Msa0482810:CDS
GCTGCTCCATCATGTGCTTC+TGG 0.288865 3_3:-90311177 None:intergenic
GAAGCATATAATGTTAATTA+GGG 0.313399 3_3:+90311547 Msa0482810:three_prime_UTR
TTAGAGATGAATTGTGTCTA+TGG 0.317455 3_3:-90310530 None:intergenic
GGCTGGAACCTCCACCATTA+AGG 0.320963 3_3:-90311156 None:intergenic
ACCTAGATTAAGTACATCTT+TGG 0.333337 3_3:+90311405 Msa0482810:three_prime_UTR
GAAGCTTTGTTTGAAGATCT+TGG 0.333930 3_3:-90311043 None:intergenic
GTCACAACAGACTGTGAATC+AGG 0.337282 3_3:+90311228 Msa0482810:CDS
CTATACCTAATCCAAATTCT+TGG 0.341320 3_3:-90312150 None:intergenic
CGGACTCTCCGAACCCGCTT+CGG 0.345482 3_3:+90310604 Msa0482810:CDS
TTTCTACTCCACAAAGGTTT+GGG 0.348567 3_3:+90312099 Msa0482810:three_prime_UTR
CTCTTCCAAGAATTTGGATT+AGG 0.366431 3_3:+90312145 Msa0482810:three_prime_UTR
GGACTCTCCGAACCCGCTTC+GGG 0.375133 3_3:+90310605 Msa0482810:CDS
GGAAACATTGAGAGATTGTC+TGG 0.383223 3_3:+90311250 Msa0482810:CDS
ATGAAGGCTTTGATCTTTAA+CGG 0.384714 3_3:-90311013 None:intergenic
GATAGGTTTGGGTTCGGATT+CGG 0.384729 3_3:-90310576 None:intergenic
CTCCATCATGTGCTTCTGGC+TGG 0.385506 3_3:-90311173 None:intergenic
TGCTGAAGACCTCGACGCTT+TGG 0.394972 3_3:+90310919 Msa0482810:CDS
GGGAGAACCCGAAGCGGGTT+CGG 0.396756 3_3:-90310612 None:intergenic
GAGTTTGCCATCGGGGTAGC+GGG 0.403035 3_3:-90310681 None:intergenic
GGTGGGCACCCAAACCTTTG+TGG 0.405256 3_3:-90312107 None:intergenic
CGACGGAGAGAACGCGAGTA+TGG 0.405589 3_3:-90310718 None:intergenic
AATGTTACACAATATGGCTT+TGG 0.405831 3_3:+90312057 Msa0482810:three_prime_UTR
AGTCCGATCATGATAGGTTT+GGG 0.410809 3_3:-90310587 None:intergenic
TGAATTTGAATTAAATTTCA+AGG 0.417154 3_3:+90311377 Msa0482810:three_prime_UTR
GAGTCCGATCATGATAGGTT+TGG 0.417451 3_3:-90310588 None:intergenic
TCGGAGAGTCCGATCATGAT+AGG 0.418153 3_3:-90310593 None:intergenic
GTTTGAGAAAGGTTCAGTTT+AGG 0.435706 3_3:-90310554 None:intergenic
GGAGTTTGCCATCGGGGTAG+CGG 0.442611 3_3:-90310682 None:intergenic
GAGATCTTCGTCGGAGGTGA+TGG 0.444682 3_3:-90310945 None:intergenic
GATCAGTGTTCCTCTGTGAT+TGG 0.445016 3_3:-90311303 None:intergenic
ACCAAAGATGTACTTAATCT+AGG 0.447015 3_3:-90311406 None:intergenic
GATCATGATAGGTTTGGGTT+CGG 0.451655 3_3:-90310582 None:intergenic
TACAGAACTGCTATTGAAGC+TGG 0.462392 3_3:+90310850 Msa0482810:intron
GTTTGCCATCGGGGTAGCGG+GGG 0.478531 3_3:-90310679 None:intergenic
ATCAAATTCCTCTGTAGCTA+TGG 0.485807 3_3:+90310644 Msa0482810:CDS
AAAATGGTTGAGAAGGATTG+AGG 0.486313 3_3:+90311656 Msa0482810:three_prime_UTR
TGGTAACCGCTGCGCGGCAG+AGG 0.494576 3_3:-90311283 None:intergenic
GTTCGGATTCGGTTTGAGAA+AGG 0.501960 3_3:-90310565 None:intergenic
AGATCTTGGTGGAGAAATGA+AGG 0.506422 3_3:-90311029 None:intergenic
AGGTAACGGAGTTTGCCATC+GGG 0.509251 3_3:-90310689 None:intergenic
CTAATCCAAATTCTTGGAAG+AGG 0.518421 3_3:-90312144 None:intergenic
TAATCCAAATTCTTGGAAGA+GGG 0.520871 3_3:-90312143 None:intergenic
TAGAGATGAATTGTGTCTAT+GGG 0.523980 3_3:-90310529 None:intergenic
GGAAAGAGAGGAAGGTGCTG+TGG 0.525643 3_3:-90310488 None:intergenic
GAACTGTATGAAGGAAAGAG+AGG 0.535371 3_3:-90310500 None:intergenic
GAATTTGAATTAAATTTCAA+GGG 0.537003 3_3:+90311378 Msa0482810:three_prime_UTR
ATAGCTACAGAGGAATTTGA+TGG 0.539808 3_3:-90310642 None:intergenic
GAGTATGGCCACCGAGGTAA+CGG 0.553394 3_3:-90310703 None:intergenic
TGATTCACAACGGCAACCAC+TGG 0.554616 3_3:+90311335 Msa0482810:CDS
TTGGAGGTGCTAACTGCAGT+TGG 0.554770 3_3:-90312189 None:intergenic
GTGATGTAAAATGGTTGAGA+AGG 0.556138 3_3:+90311649 Msa0482810:three_prime_UTR
GATTTGGGAGAACCCGAAGC+GGG 0.560074 3_3:-90310617 None:intergenic
TGCATGTTTGATATCGCAGT+AGG 0.561211 3_3:-90311514 None:intergenic
TTGATCTTTAACGGTGATTG+TGG 0.561405 3_3:-90311004 None:intergenic
AGTTTGCCATCGGGGTAGCG+GGG 0.563948 3_3:-90310680 None:intergenic
GAGGTGCTAACTGCAGTTGG+TGG 0.566061 3_3:-90312186 None:intergenic
GAGGTAACGGAGTTTGCCAT+CGG 0.574295 3_3:-90310690 None:intergenic
TTCCAGCCAGAAGCACATGA+TGG 0.583097 3_3:+90311171 Msa0482810:CDS
TCACAACAGACTGTGAATCA+GGG 0.584112 3_3:+90311229 Msa0482810:CDS
AAATTCCTCTGTAGCTATGG+TGG 0.590401 3_3:+90310647 Msa0482810:CDS
GCATGTTTGATATCGCAGTA+GGG 0.592792 3_3:-90311513 None:intergenic
ATCCAAATTCTTGGAAGAGG+GGG 0.602446 3_3:-90312141 None:intergenic
TAGATTGATGAGATCTTCGT+CGG 0.604580 3_3:-90310954 None:intergenic
TGAACACATCGGTAAACTAC+AGG 0.607431 3_3:-90311199 None:intergenic
GCTTTGTTTGAAGATCTTGG+TGG 0.609304 3_3:-90311040 None:intergenic
AAAGCGTCGAGGTCTTCAGC+AGG 0.612170 3_3:-90310917 None:intergenic
GAACCCAAACCTATCATGAT+CGG 0.613598 3_3:+90310584 Msa0482810:exon
TGAAGACGACGTTGATGACA+CGG 0.613599 3_3:-90311119 None:intergenic
TATAGCAGCCTTAATGGTGG+AGG 0.613879 3_3:+90311148 Msa0482810:CDS
GAGCGTAGCGTTATTGCCAG+TGG 0.616144 3_3:-90311351 None:intergenic
GATGGCAAACTCCGTTACCT+CGG 0.616199 3_3:+90310692 Msa0482810:CDS
AATGTTCCTCTGCCGCGCAG+CGG 0.626255 3_3:+90311277 Msa0482810:CDS
TGTATGAAGGAAAGAGAGGA+AGG 0.627855 3_3:-90310496 None:intergenic
GCTACAGAGGAATTTGATGG+TGG 0.629406 3_3:-90310639 None:intergenic
GGCAAACTCCGTTACCTCGG+TGG 0.637105 3_3:+90310695 Msa0482810:CDS
AAATTGGATAGAGCGATCGA+CGG 0.641093 3_3:-90310735 None:intergenic
CAAAATTATCTGATTCACAA+CGG 0.642368 3_3:+90311325 Msa0482810:CDS
AATCCAAATTCTTGGAAGAG+GGG 0.642704 3_3:-90312142 None:intergenic
GGGTTGAGTGAACTGTATGA+AGG 0.648357 3_3:-90310509 None:intergenic
AGGAGACAAATTCATTAACA+AGG 0.653399 3_3:-90311693 None:intergenic
TTTGACAGAAACGGTAACGG+AGG 0.654693 3_3:-90311070 None:intergenic
GAAACATTGAGAGATTGTCT+GGG 0.660379 3_3:+90311251 Msa0482810:CDS
TCGTATAGCAGCCTTAATGG+TGG 0.663823 3_3:+90311145 Msa0482810:CDS
GGTAACGGAGTTTGCCATCG+GGG 0.665902 3_3:-90310688 None:intergenic
ACATTGAGAGATTGTCTGGG+AGG 0.666794 3_3:+90311254 Msa0482810:CDS
GGATTTGGGAGAACCCGAAG+CGG 0.677084 3_3:-90310618 None:intergenic
ATTGATGAGATCTTCGTCGG+AGG 0.680364 3_3:-90310951 None:intergenic
CTGACAGCGAAGTTGCGTCA+CGG 0.682620 3_3:-90310891 None:intergenic
AAAGATGTACTTAATCTAGG+TGG 0.694669 3_3:-90311403 None:intergenic
TGATGGAAACCAAAGCGTCG+AGG 0.706223 3_3:-90310928 None:intergenic
TGTGATTGGTAACCGCTGCG+CGG 0.740916 3_3:-90311289 None:intergenic
GTGACATATGATGAACACAT+CGG 0.753298 3_3:-90311210 None:intergenic
GAACGCGAGTATGGCCACCG+AGG 0.755415 3_3:-90310709 None:intergenic
AGACGACGTTGATGACACGG+AGG 0.790265 3_3:-90311116 None:intergenic
GCAGCGGTTACCAATCACAG+AGG 0.798038 3_3:+90311293 Msa0482810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAACATAAAAATTTTAG+GGG - chr3_3:90311946-90311965 None:intergenic 10.0%
!!! GTAAAAACATAAAAATTTTA+GGG - chr3_3:90311947-90311966 None:intergenic 10.0%
!!! TGTAAAAACATAAAAATTTT+AGG - chr3_3:90311948-90311967 None:intergenic 10.0%
!!! TAAAAACATAAAAATTTTAG+GGG - chr3_3:90311946-90311965 None:intergenic 10.0%
!!! GTAAAAACATAAAAATTTTA+GGG - chr3_3:90311947-90311966 None:intergenic 10.0%
!!! TGTAAAAACATAAAAATTTT+AGG - chr3_3:90311948-90311967 None:intergenic 10.0%
!! TGAATTTGAATTAAATTTCA+AGG + chr3_3:90311377-90311396 Msa0482810:three_prime_UTR 15.0%
!! GAATTTGAATTAAATTTCAA+GGG + chr3_3:90311378-90311397 Msa0482810:three_prime_UTR 15.0%
!! ATAATGAAAAATATGTATCA+AGG - chr3_3:90311838-90311857 None:intergenic 15.0%
!!! TTGATACATATTTTTCATTA+TGG + chr3_3:90311837-90311856 Msa0482810:intron 15.0%
!!! AAAAACATAAAAATTTTAGG+GGG - chr3_3:90311945-90311964 None:intergenic 15.0%
!! TGAATTTGAATTAAATTTCA+AGG + chr3_3:90311377-90311396 Msa0482810:three_prime_UTR 15.0%
!! GAATTTGAATTAAATTTCAA+GGG + chr3_3:90311378-90311397 Msa0482810:three_prime_UTR 15.0%
!! ATAATGAAAAATATGTATCA+AGG - chr3_3:90311838-90311857 None:intergenic 15.0%
!!! TTGATACATATTTTTCATTA+TGG + chr3_3:90311837-90311856 Msa0482810:intron 15.0%
!!! AAAAACATAAAAATTTTAGG+GGG - chr3_3:90311945-90311964 None:intergenic 15.0%
!! TTACATCTAATAATACTAAC+CGG - chr3_3:90310762-90310781 None:intergenic 20.0%
!!! AGAAGCATATAATGTTAATT+AGG + chr3_3:90311546-90311565 Msa0482810:three_prime_UTR 20.0%
!! GAAGCATATAATGTTAATTA+GGG + chr3_3:90311547-90311566 Msa0482810:three_prime_UTR 20.0%
!! TTAAATGAAGAAAAAAGAAG+AGG + chr3_3:90311597-90311616 Msa0482810:three_prime_UTR 20.0%
!! GATATATTTGTGATGTAAAA+TGG + chr3_3:90311640-90311659 Msa0482810:three_prime_UTR 20.0%
!!! TTGGTGGATTTTTTTATTTA+TGG + chr3_3:90311783-90311802 Msa0482810:intron 20.0%
!!! TGGTGGATTTTTTTATTTAT+GGG + chr3_3:90311784-90311803 Msa0482810:intron 20.0%
!!! ATTTTTTTATTTATGGGGAT+GGG + chr3_3:90311790-90311809 Msa0482810:intron 20.0%
!!! AATATGTATCAAGGATTTTT+TGG - chr3_3:90311829-90311848 None:intergenic 20.0%
!!! TTTTAAGGATTTGTATAAGT+TGG + chr3_3:90311983-90312002 Msa0482810:intron 20.0%
!! TTACATCTAATAATACTAAC+CGG - chr3_3:90310762-90310781 None:intergenic 20.0%
!!! AGAAGCATATAATGTTAATT+AGG + chr3_3:90311546-90311565 Msa0482810:three_prime_UTR 20.0%
!! GAAGCATATAATGTTAATTA+GGG + chr3_3:90311547-90311566 Msa0482810:three_prime_UTR 20.0%
!! TTAAATGAAGAAAAAAGAAG+AGG + chr3_3:90311597-90311616 Msa0482810:three_prime_UTR 20.0%
!! GATATATTTGTGATGTAAAA+TGG + chr3_3:90311640-90311659 Msa0482810:three_prime_UTR 20.0%
!!! TTGGTGGATTTTTTTATTTA+TGG + chr3_3:90311783-90311802 Msa0482810:intron 20.0%
!!! TGGTGGATTTTTTTATTTAT+GGG + chr3_3:90311784-90311803 Msa0482810:intron 20.0%
!!! ATTTTTTTATTTATGGGGAT+GGG + chr3_3:90311790-90311809 Msa0482810:intron 20.0%
!!! AATATGTATCAAGGATTTTT+TGG - chr3_3:90311829-90311848 None:intergenic 20.0%
!!! TTTTAAGGATTTGTATAAGT+TGG + chr3_3:90311983-90312002 Msa0482810:intron 20.0%
! AATAATACTAACCGGAAAAT+TGG - chr3_3:90310754-90310773 None:intergenic 25.0%
! CAAAATTATCTGATTCACAA+CGG + chr3_3:90311325-90311344 Msa0482810:CDS 25.0%
! TCTTTGTATTACTATGATTC+TGG + chr3_3:90311487-90311506 Msa0482810:three_prime_UTR 25.0%
!! TTTTCTATTTTCTGTCATCT+TGG + chr3_3:90311764-90311783 Msa0482810:intron 25.0%
!!! GGTGGATTTTTTTATTTATG+GGG + chr3_3:90311785-90311804 Msa0482810:intron 25.0%
!!! GATTTTTTTATTTATGGGGA+TGG + chr3_3:90311789-90311808 Msa0482810:intron 25.0%
! GTGAAAAATGTTACACAATA+TGG + chr3_3:90312051-90312070 Msa0482810:three_prime_UTR 25.0%
!! TTGAATCATCTAATCTTTTC+TGG - chr3_3:90312216-90312235 None:intergenic 25.0%
! AATAATACTAACCGGAAAAT+TGG - chr3_3:90310754-90310773 None:intergenic 25.0%
! CAAAATTATCTGATTCACAA+CGG + chr3_3:90311325-90311344 Msa0482810:CDS 25.0%
! TCTTTGTATTACTATGATTC+TGG + chr3_3:90311487-90311506 Msa0482810:three_prime_UTR 25.0%
!! TTTTCTATTTTCTGTCATCT+TGG + chr3_3:90311764-90311783 Msa0482810:intron 25.0%
!!! GGTGGATTTTTTTATTTATG+GGG + chr3_3:90311785-90311804 Msa0482810:intron 25.0%
!!! GATTTTTTTATTTATGGGGA+TGG + chr3_3:90311789-90311808 Msa0482810:intron 25.0%
! GTGAAAAATGTTACACAATA+TGG + chr3_3:90312051-90312070 Msa0482810:three_prime_UTR 25.0%
!! TTGAATCATCTAATCTTTTC+TGG - chr3_3:90312216-90312235 None:intergenic 25.0%
TAGAGATGAATTGTGTCTAT+GGG - chr3_3:90310532-90310551 None:intergenic 30.0%
TTAGAGATGAATTGTGTCTA+TGG - chr3_3:90310533-90310552 None:intergenic 30.0%
! ATGAAGGCTTTGATCTTTAA+CGG - chr3_3:90311016-90311035 None:intergenic 30.0%
AAAGATGTACTTAATCTAGG+TGG - chr3_3:90311406-90311425 None:intergenic 30.0%
ACCTAGATTAAGTACATCTT+TGG + chr3_3:90311405-90311424 Msa0482810:three_prime_UTR 30.0%
ACCAAAGATGTACTTAATCT+AGG - chr3_3:90311409-90311428 None:intergenic 30.0%
AGGAGACAAATTCATTAACA+AGG - chr3_3:90311696-90311715 None:intergenic 30.0%
! AGTTTTACACTTCTGATTTC+AGG + chr3_3:90312016-90312035 Msa0482810:intron 30.0%
AATGTTACACAATATGGCTT+TGG + chr3_3:90312057-90312076 Msa0482810:three_prime_UTR 30.0%
! TAAGTTTTTCTACTCCACAA+AGG + chr3_3:90312093-90312112 Msa0482810:three_prime_UTR 30.0%
TAATCCAAATTCTTGGAAGA+GGG - chr3_3:90312146-90312165 None:intergenic 30.0%
CTATACCTAATCCAAATTCT+TGG - chr3_3:90312153-90312172 None:intergenic 30.0%
!!! TCATCTAATCTTTTCTGGTT+TGG - chr3_3:90312211-90312230 None:intergenic 30.0%
TAGAGATGAATTGTGTCTAT+GGG - chr3_3:90310532-90310551 None:intergenic 30.0%
TTAGAGATGAATTGTGTCTA+TGG - chr3_3:90310533-90310552 None:intergenic 30.0%
! ATGAAGGCTTTGATCTTTAA+CGG - chr3_3:90311016-90311035 None:intergenic 30.0%
AAAGATGTACTTAATCTAGG+TGG - chr3_3:90311406-90311425 None:intergenic 30.0%
ACCTAGATTAAGTACATCTT+TGG + chr3_3:90311405-90311424 Msa0482810:three_prime_UTR 30.0%
ACCAAAGATGTACTTAATCT+AGG - chr3_3:90311409-90311428 None:intergenic 30.0%
AGGAGACAAATTCATTAACA+AGG - chr3_3:90311696-90311715 None:intergenic 30.0%
! AGTTTTACACTTCTGATTTC+AGG + chr3_3:90312016-90312035 Msa0482810:intron 30.0%
AATGTTACACAATATGGCTT+TGG + chr3_3:90312057-90312076 Msa0482810:three_prime_UTR 30.0%
! TAAGTTTTTCTACTCCACAA+AGG + chr3_3:90312093-90312112 Msa0482810:three_prime_UTR 30.0%
TAATCCAAATTCTTGGAAGA+GGG - chr3_3:90312146-90312165 None:intergenic 30.0%
CTATACCTAATCCAAATTCT+TGG - chr3_3:90312153-90312172 None:intergenic 30.0%
!!! TCATCTAATCTTTTCTGGTT+TGG - chr3_3:90312211-90312230 None:intergenic 30.0%
GTTTGAGAAAGGTTCAGTTT+AGG - chr3_3:90310557-90310576 None:intergenic 35.0%
!! AGGAATTTGATGGTGGATTT+GGG - chr3_3:90310635-90310654 None:intergenic 35.0%
ATAGCTACAGAGGAATTTGA+TGG - chr3_3:90310645-90310664 None:intergenic 35.0%
ATCAAATTCCTCTGTAGCTA+TGG + chr3_3:90310644-90310663 Msa0482810:CDS 35.0%
TAGATTGATGAGATCTTCGT+CGG - chr3_3:90310957-90310976 None:intergenic 35.0%
TTGATCTTTAACGGTGATTG+TGG - chr3_3:90311007-90311026 None:intergenic 35.0%
!! GAAGCTTTGTTTGAAGATCT+TGG - chr3_3:90311046-90311065 None:intergenic 35.0%
!! GATTTTGACAGAAACGGTAA+CGG - chr3_3:90311076-90311095 None:intergenic 35.0%
!!! GATGCTGATTTTGACAGAAA+CGG - chr3_3:90311082-90311101 None:intergenic 35.0%
GTGACATATGATGAACACAT+CGG - chr3_3:90311213-90311232 None:intergenic 35.0%
GAAACATTGAGAGATTGTCT+GGG + chr3_3:90311251-90311270 Msa0482810:CDS 35.0%
GGAGAAAGAAAAAGTTGTGA+AGG + chr3_3:90311618-90311637 Msa0482810:three_prime_UTR 35.0%
GTGATGTAAAATGGTTGAGA+AGG + chr3_3:90311649-90311668 Msa0482810:three_prime_UTR 35.0%
AAAATGGTTGAGAAGGATTG+AGG + chr3_3:90311656-90311675 Msa0482810:three_prime_UTR 35.0%
AATGGAGGCAAAAACGAAAA+AGG - chr3_3:90311716-90311735 None:intergenic 35.0%
ACTCACCATCACTACAAAAA+TGG - chr3_3:90311734-90311753 None:intergenic 35.0%
! TCTATTTTCTGTCATCTTGG+TGG + chr3_3:90311767-90311786 Msa0482810:intron 35.0%
AATTGCAACCGTGATTGAAA+GGG - chr3_3:90311920-90311939 None:intergenic 35.0%
AAATTGCAACCGTGATTGAA+AGG - chr3_3:90311921-90311940 None:intergenic 35.0%
! TTTTCTACTCCACAAAGGTT+TGG + chr3_3:90312098-90312117 Msa0482810:three_prime_UTR 35.0%
TTTCTACTCCACAAAGGTTT+GGG + chr3_3:90312099-90312118 Msa0482810:three_prime_UTR 35.0%
AATCCAAATTCTTGGAAGAG+GGG - chr3_3:90312145-90312164 None:intergenic 35.0%
CTAATCCAAATTCTTGGAAG+AGG - chr3_3:90312147-90312166 None:intergenic 35.0%
CTCTTCCAAGAATTTGGATT+AGG + chr3_3:90312145-90312164 Msa0482810:three_prime_UTR 35.0%
!!! TCTAATCTTTTCTGGTTTGG+AGG - chr3_3:90312208-90312227 None:intergenic 35.0%
GTTTGAGAAAGGTTCAGTTT+AGG - chr3_3:90310557-90310576 None:intergenic 35.0%
!! AGGAATTTGATGGTGGATTT+GGG - chr3_3:90310635-90310654 None:intergenic 35.0%
ATAGCTACAGAGGAATTTGA+TGG - chr3_3:90310645-90310664 None:intergenic 35.0%
ATCAAATTCCTCTGTAGCTA+TGG + chr3_3:90310644-90310663 Msa0482810:CDS 35.0%
TAGATTGATGAGATCTTCGT+CGG - chr3_3:90310957-90310976 None:intergenic 35.0%
TTGATCTTTAACGGTGATTG+TGG - chr3_3:90311007-90311026 None:intergenic 35.0%
!! GAAGCTTTGTTTGAAGATCT+TGG - chr3_3:90311046-90311065 None:intergenic 35.0%
!! GATTTTGACAGAAACGGTAA+CGG - chr3_3:90311076-90311095 None:intergenic 35.0%
!!! GATGCTGATTTTGACAGAAA+CGG - chr3_3:90311082-90311101 None:intergenic 35.0%
GTGACATATGATGAACACAT+CGG - chr3_3:90311213-90311232 None:intergenic 35.0%
GAAACATTGAGAGATTGTCT+GGG + chr3_3:90311251-90311270 Msa0482810:CDS 35.0%
GGAGAAAGAAAAAGTTGTGA+AGG + chr3_3:90311618-90311637 Msa0482810:three_prime_UTR 35.0%
GTGATGTAAAATGGTTGAGA+AGG + chr3_3:90311649-90311668 Msa0482810:three_prime_UTR 35.0%
AAAATGGTTGAGAAGGATTG+AGG + chr3_3:90311656-90311675 Msa0482810:three_prime_UTR 35.0%
AATGGAGGCAAAAACGAAAA+AGG - chr3_3:90311716-90311735 None:intergenic 35.0%
ACTCACCATCACTACAAAAA+TGG - chr3_3:90311734-90311753 None:intergenic 35.0%
! TCTATTTTCTGTCATCTTGG+TGG + chr3_3:90311767-90311786 Msa0482810:intron 35.0%
AATTGCAACCGTGATTGAAA+GGG - chr3_3:90311920-90311939 None:intergenic 35.0%
AAATTGCAACCGTGATTGAA+AGG - chr3_3:90311921-90311940 None:intergenic 35.0%
! TTTTCTACTCCACAAAGGTT+TGG + chr3_3:90312098-90312117 Msa0482810:three_prime_UTR 35.0%
TTTCTACTCCACAAAGGTTT+GGG + chr3_3:90312099-90312118 Msa0482810:three_prime_UTR 35.0%
AATCCAAATTCTTGGAAGAG+GGG - chr3_3:90312145-90312164 None:intergenic 35.0%
CTAATCCAAATTCTTGGAAG+AGG - chr3_3:90312147-90312166 None:intergenic 35.0%
CTCTTCCAAGAATTTGGATT+AGG + chr3_3:90312145-90312164 Msa0482810:three_prime_UTR 35.0%
!!! TCTAATCTTTTCTGGTTTGG+AGG - chr3_3:90312208-90312227 None:intergenic 35.0%
TGTATGAAGGAAAGAGAGGA+AGG - chr3_3:90310499-90310518 None:intergenic 40.0%
GAACTGTATGAAGGAAAGAG+AGG - chr3_3:90310503-90310522 None:intergenic 40.0%
! GATCATGATAGGTTTGGGTT+CGG - chr3_3:90310585-90310604 None:intergenic 40.0%
GAACCCAAACCTATCATGAT+CGG + chr3_3:90310584-90310603 Msa0482810:exon 40.0%
AGTCCGATCATGATAGGTTT+GGG - chr3_3:90310590-90310609 None:intergenic 40.0%
!! GAGGAATTTGATGGTGGATT+TGG - chr3_3:90310636-90310655 None:intergenic 40.0%
AAATTCCTCTGTAGCTATGG+TGG + chr3_3:90310647-90310666 Msa0482810:CDS 40.0%
AAATTGGATAGAGCGATCGA+CGG - chr3_3:90310738-90310757 None:intergenic 40.0%
! GATCGCTCTATCCAATTTTC+CGG + chr3_3:90310740-90310759 Msa0482810:CDS 40.0%
TACAGAACTGCTATTGAAGC+TGG + chr3_3:90310850-90310869 Msa0482810:intron 40.0%
AGATCTTGGTGGAGAAATGA+AGG - chr3_3:90311032-90311051 None:intergenic 40.0%
!! GCTTTGTTTGAAGATCTTGG+TGG - chr3_3:90311043-90311062 None:intergenic 40.0%
TCATCGTATAGCAGCCTTAA+TGG + chr3_3:90311142-90311161 Msa0482810:CDS 40.0%
TGAACACATCGGTAAACTAC+AGG - chr3_3:90311202-90311221 None:intergenic 40.0%
TCACAACAGACTGTGAATCA+GGG + chr3_3:90311229-90311248 Msa0482810:CDS 40.0%
GGAAACATTGAGAGATTGTC+TGG + chr3_3:90311250-90311269 Msa0482810:CDS 40.0%
GCATGTTTGATATCGCAGTA+GGG - chr3_3:90311516-90311535 None:intergenic 40.0%
TGCATGTTTGATATCGCAGT+AGG - chr3_3:90311517-90311536 None:intergenic 40.0%
!! TGCCTCCATTTTTGTAGTGA+TGG + chr3_3:90311726-90311745 Msa0482810:three_prime_UTR 40.0%
CACCATCACTACAAAAATGG+AGG - chr3_3:90311731-90311750 None:intergenic 40.0%
ATGTTCGTCTTCTTGTGCTT+TGG + chr3_3:90311862-90311881 Msa0482810:intron 40.0%
ATTGCAACCGTGATTGAAAG+GGG - chr3_3:90311919-90311938 None:intergenic 40.0%
ATCCAAATTCTTGGAAGAGG+GGG - chr3_3:90312144-90312163 None:intergenic 40.0%
TGTATGAAGGAAAGAGAGGA+AGG - chr3_3:90310499-90310518 None:intergenic 40.0%
GAACTGTATGAAGGAAAGAG+AGG - chr3_3:90310503-90310522 None:intergenic 40.0%
! GATCATGATAGGTTTGGGTT+CGG - chr3_3:90310585-90310604 None:intergenic 40.0%
GAACCCAAACCTATCATGAT+CGG + chr3_3:90310584-90310603 Msa0482810:exon 40.0%
AGTCCGATCATGATAGGTTT+GGG - chr3_3:90310590-90310609 None:intergenic 40.0%
!! GAGGAATTTGATGGTGGATT+TGG - chr3_3:90310636-90310655 None:intergenic 40.0%
AAATTCCTCTGTAGCTATGG+TGG + chr3_3:90310647-90310666 Msa0482810:CDS 40.0%
AAATTGGATAGAGCGATCGA+CGG - chr3_3:90310738-90310757 None:intergenic 40.0%
! GATCGCTCTATCCAATTTTC+CGG + chr3_3:90310740-90310759 Msa0482810:CDS 40.0%
TACAGAACTGCTATTGAAGC+TGG + chr3_3:90310850-90310869 Msa0482810:intron 40.0%
AGATCTTGGTGGAGAAATGA+AGG - chr3_3:90311032-90311051 None:intergenic 40.0%
!! GCTTTGTTTGAAGATCTTGG+TGG - chr3_3:90311043-90311062 None:intergenic 40.0%
TCATCGTATAGCAGCCTTAA+TGG + chr3_3:90311142-90311161 Msa0482810:CDS 40.0%
TGAACACATCGGTAAACTAC+AGG - chr3_3:90311202-90311221 None:intergenic 40.0%
TCACAACAGACTGTGAATCA+GGG + chr3_3:90311229-90311248 Msa0482810:CDS 40.0%
GGAAACATTGAGAGATTGTC+TGG + chr3_3:90311250-90311269 Msa0482810:CDS 40.0%
GCATGTTTGATATCGCAGTA+GGG - chr3_3:90311516-90311535 None:intergenic 40.0%
TGCATGTTTGATATCGCAGT+AGG - chr3_3:90311517-90311536 None:intergenic 40.0%
!! TGCCTCCATTTTTGTAGTGA+TGG + chr3_3:90311726-90311745 Msa0482810:three_prime_UTR 40.0%
CACCATCACTACAAAAATGG+AGG - chr3_3:90311731-90311750 None:intergenic 40.0%
ATGTTCGTCTTCTTGTGCTT+TGG + chr3_3:90311862-90311881 Msa0482810:intron 40.0%
ATTGCAACCGTGATTGAAAG+GGG - chr3_3:90311919-90311938 None:intergenic 40.0%
ATCCAAATTCTTGGAAGAGG+GGG - chr3_3:90312144-90312163 None:intergenic 40.0%
!! AGGTGCTGTGGATTTTGGTA+TGG - chr3_3:90310479-90310498 None:intergenic 45.0%
GGGTTGAGTGAACTGTATGA+AGG - chr3_3:90310512-90310531 None:intergenic 45.0%
! GTTCGGATTCGGTTTGAGAA+AGG - chr3_3:90310568-90310587 None:intergenic 45.0%
! GATAGGTTTGGGTTCGGATT+CGG - chr3_3:90310579-90310598 None:intergenic 45.0%
GAGTCCGATCATGATAGGTT+TGG - chr3_3:90310591-90310610 None:intergenic 45.0%
GCTACAGAGGAATTTGATGG+TGG - chr3_3:90310642-90310661 None:intergenic 45.0%
! TTTTGCCACCATAGCTACAG+AGG - chr3_3:90310655-90310674 None:intergenic 45.0%
ATTGATGAGATCTTCGTCGG+AGG - chr3_3:90310954-90310973 None:intergenic 45.0%
! TTTGACAGAAACGGTAACGG+AGG - chr3_3:90311073-90311092 None:intergenic 45.0%
!! TGAAGACGACGTTGATGACA+CGG - chr3_3:90311122-90311141 None:intergenic 45.0%
TCGTATAGCAGCCTTAATGG+TGG + chr3_3:90311145-90311164 Msa0482810:CDS 45.0%
TATAGCAGCCTTAATGGTGG+AGG + chr3_3:90311148-90311167 Msa0482810:CDS 45.0%
GTCACAACAGACTGTGAATC+AGG + chr3_3:90311228-90311247 Msa0482810:CDS 45.0%
ACATTGAGAGATTGTCTGGG+AGG + chr3_3:90311254-90311273 Msa0482810:CDS 45.0%
GATCAGTGTTCCTCTGTGAT+TGG - chr3_3:90311306-90311325 None:intergenic 45.0%
! TGGGGATGGGTTTAGTTTCA+TGG + chr3_3:90311803-90311822 Msa0482810:intron 45.0%
GTCTTCTTGTGCTTTGGCTA+TGG + chr3_3:90311868-90311887 Msa0482810:intron 45.0%
TCCTCTTCCCCTTTCAATCA+CGG + chr3_3:90311909-90311928 Msa0482810:intron 45.0%
AAATTCTTGGAAGAGGGGGT+GGG - chr3_3:90312140-90312159 None:intergenic 45.0%
!! AGGTGCTGTGGATTTTGGTA+TGG - chr3_3:90310479-90310498 None:intergenic 45.0%
GGGTTGAGTGAACTGTATGA+AGG - chr3_3:90310512-90310531 None:intergenic 45.0%
! GTTCGGATTCGGTTTGAGAA+AGG - chr3_3:90310568-90310587 None:intergenic 45.0%
! GATAGGTTTGGGTTCGGATT+CGG - chr3_3:90310579-90310598 None:intergenic 45.0%
GAGTCCGATCATGATAGGTT+TGG - chr3_3:90310591-90310610 None:intergenic 45.0%
GCTACAGAGGAATTTGATGG+TGG - chr3_3:90310642-90310661 None:intergenic 45.0%
! TTTTGCCACCATAGCTACAG+AGG - chr3_3:90310655-90310674 None:intergenic 45.0%
ATTGATGAGATCTTCGTCGG+AGG - chr3_3:90310954-90310973 None:intergenic 45.0%
! TTTGACAGAAACGGTAACGG+AGG - chr3_3:90311073-90311092 None:intergenic 45.0%
!! TGAAGACGACGTTGATGACA+CGG - chr3_3:90311122-90311141 None:intergenic 45.0%
TCGTATAGCAGCCTTAATGG+TGG + chr3_3:90311145-90311164 Msa0482810:CDS 45.0%
TATAGCAGCCTTAATGGTGG+AGG + chr3_3:90311148-90311167 Msa0482810:CDS 45.0%
GTCACAACAGACTGTGAATC+AGG + chr3_3:90311228-90311247 Msa0482810:CDS 45.0%
ACATTGAGAGATTGTCTGGG+AGG + chr3_3:90311254-90311273 Msa0482810:CDS 45.0%
GATCAGTGTTCCTCTGTGAT+TGG - chr3_3:90311306-90311325 None:intergenic 45.0%
! TGGGGATGGGTTTAGTTTCA+TGG + chr3_3:90311803-90311822 Msa0482810:intron 45.0%
GTCTTCTTGTGCTTTGGCTA+TGG + chr3_3:90311868-90311887 Msa0482810:intron 45.0%
TCCTCTTCCCCTTTCAATCA+CGG + chr3_3:90311909-90311928 Msa0482810:intron 45.0%
AAATTCTTGGAAGAGGGGGT+GGG - chr3_3:90312140-90312159 None:intergenic 45.0%
!!! ACTTATTTTTTTTTTTTTTA+AGG + chr3_3:90311968-90311987 Msa0482810:intron 5.0%
!!! ACTTATTTTTTTTTTTTTTA+AGG + chr3_3:90311968-90311987 Msa0482810:intron 5.0%
!!! GAGGAAGGTGCTGTGGATTT+TGG - chr3_3:90310484-90310503 None:intergenic 50.0%
TCGGAGAGTCCGATCATGAT+AGG - chr3_3:90310596-90310615 None:intergenic 50.0%
!! AGGTAACGGAGTTTGCCATC+GGG - chr3_3:90310692-90310711 None:intergenic 50.0%
!! GAGGTAACGGAGTTTGCCAT+CGG - chr3_3:90310693-90310712 None:intergenic 50.0%
GATGGCAAACTCCGTTACCT+CGG + chr3_3:90310692-90310711 Msa0482810:CDS 50.0%
!! TGATGGAAACCAAAGCGTCG+AGG - chr3_3:90310931-90310950 None:intergenic 50.0%
! TTCCAGCCAGAAGCACATGA+TGG + chr3_3:90311171-90311190 Msa0482810:CDS 50.0%
TGATTCACAACGGCAACCAC+TGG + chr3_3:90311335-90311354 Msa0482810:CDS 50.0%
ACCGTGATTGAAAGGGGAAG+AGG - chr3_3:90311913-90311932 None:intergenic 50.0%
AATTCTTGGAAGAGGGGGTG+GGG - chr3_3:90312139-90312158 None:intergenic 50.0%
CAAATTCTTGGAAGAGGGGG+TGG - chr3_3:90312141-90312160 None:intergenic 50.0%
CACCCCCTCTTCCAAGAATT+TGG + chr3_3:90312139-90312158 Msa0482810:three_prime_UTR 50.0%
!! TTGGAGGTGCTAACTGCAGT+TGG - chr3_3:90312192-90312211 None:intergenic 50.0%
!!! GAGGAAGGTGCTGTGGATTT+TGG - chr3_3:90310484-90310503 None:intergenic 50.0%
TCGGAGAGTCCGATCATGAT+AGG - chr3_3:90310596-90310615 None:intergenic 50.0%
!! AGGTAACGGAGTTTGCCATC+GGG - chr3_3:90310692-90310711 None:intergenic 50.0%
!! GAGGTAACGGAGTTTGCCAT+CGG - chr3_3:90310693-90310712 None:intergenic 50.0%
GATGGCAAACTCCGTTACCT+CGG + chr3_3:90310692-90310711 Msa0482810:CDS 50.0%
!! TGATGGAAACCAAAGCGTCG+AGG - chr3_3:90310931-90310950 None:intergenic 50.0%
! TTCCAGCCAGAAGCACATGA+TGG + chr3_3:90311171-90311190 Msa0482810:CDS 50.0%
TGATTCACAACGGCAACCAC+TGG + chr3_3:90311335-90311354 Msa0482810:CDS 50.0%
ACCGTGATTGAAAGGGGAAG+AGG - chr3_3:90311913-90311932 None:intergenic 50.0%
AATTCTTGGAAGAGGGGGTG+GGG - chr3_3:90312139-90312158 None:intergenic 50.0%
CAAATTCTTGGAAGAGGGGG+TGG - chr3_3:90312141-90312160 None:intergenic 50.0%
CACCCCCTCTTCCAAGAATT+TGG + chr3_3:90312139-90312158 Msa0482810:three_prime_UTR 50.0%
!! TTGGAGGTGCTAACTGCAGT+TGG - chr3_3:90312192-90312211 None:intergenic 50.0%
!! GGAAAGAGAGGAAGGTGCTG+TGG - chr3_3:90310491-90310510 None:intergenic 55.0%
GATTTGGGAGAACCCGAAGC+GGG - chr3_3:90310620-90310639 None:intergenic 55.0%
GGATTTGGGAGAACCCGAAG+CGG - chr3_3:90310621-90310640 None:intergenic 55.0%
!! GGTAACGGAGTTTGCCATCG+GGG - chr3_3:90310691-90310710 None:intergenic 55.0%
GAGTATGGCCACCGAGGTAA+CGG - chr3_3:90310706-90310725 None:intergenic 55.0%
CTGACAGCGAAGTTGCGTCA+CGG - chr3_3:90310894-90310913 None:intergenic 55.0%
!! AAAGCGTCGAGGTCTTCAGC+AGG - chr3_3:90310920-90310939 None:intergenic 55.0%
TGCTGAAGACCTCGACGCTT+TGG + chr3_3:90310919-90310938 Msa0482810:CDS 55.0%
GAGATCTTCGTCGGAGGTGA+TGG - chr3_3:90310948-90310967 None:intergenic 55.0%
!! AGACGACGTTGATGACACGG+AGG - chr3_3:90311119-90311138 None:intergenic 55.0%
GGCTGGAACCTCCACCATTA+AGG - chr3_3:90311159-90311178 None:intergenic 55.0%
CTCCATCATGTGCTTCTGGC+TGG - chr3_3:90311176-90311195 None:intergenic 55.0%
GCTGCTCCATCATGTGCTTC+TGG - chr3_3:90311180-90311199 None:intergenic 55.0%
! TGTGATTGGTAACCGCTGCG+CGG - chr3_3:90311292-90311311 None:intergenic 55.0%
GCAGCGGTTACCAATCACAG+AGG + chr3_3:90311293-90311312 Msa0482810:CDS 55.0%
GAGCGTAGCGTTATTGCCAG+TGG - chr3_3:90311354-90311373 None:intergenic 55.0%
! GAGGTGCTAACTGCAGTTGG+TGG - chr3_3:90312189-90312208 None:intergenic 55.0%
!! GGAAAGAGAGGAAGGTGCTG+TGG - chr3_3:90310491-90310510 None:intergenic 55.0%
GATTTGGGAGAACCCGAAGC+GGG - chr3_3:90310620-90310639 None:intergenic 55.0%
GGATTTGGGAGAACCCGAAG+CGG - chr3_3:90310621-90310640 None:intergenic 55.0%
!! GGTAACGGAGTTTGCCATCG+GGG - chr3_3:90310691-90310710 None:intergenic 55.0%
GAGTATGGCCACCGAGGTAA+CGG - chr3_3:90310706-90310725 None:intergenic 55.0%
CTGACAGCGAAGTTGCGTCA+CGG - chr3_3:90310894-90310913 None:intergenic 55.0%
!! AAAGCGTCGAGGTCTTCAGC+AGG - chr3_3:90310920-90310939 None:intergenic 55.0%
TGCTGAAGACCTCGACGCTT+TGG + chr3_3:90310919-90310938 Msa0482810:CDS 55.0%
GAGATCTTCGTCGGAGGTGA+TGG - chr3_3:90310948-90310967 None:intergenic 55.0%
!! AGACGACGTTGATGACACGG+AGG - chr3_3:90311119-90311138 None:intergenic 55.0%
GGCTGGAACCTCCACCATTA+AGG - chr3_3:90311159-90311178 None:intergenic 55.0%
CTCCATCATGTGCTTCTGGC+TGG - chr3_3:90311176-90311195 None:intergenic 55.0%
GCTGCTCCATCATGTGCTTC+TGG - chr3_3:90311180-90311199 None:intergenic 55.0%
! TGTGATTGGTAACCGCTGCG+CGG - chr3_3:90311292-90311311 None:intergenic 55.0%
GCAGCGGTTACCAATCACAG+AGG + chr3_3:90311293-90311312 Msa0482810:CDS 55.0%
GAGCGTAGCGTTATTGCCAG+TGG - chr3_3:90311354-90311373 None:intergenic 55.0%
! GAGGTGCTAACTGCAGTTGG+TGG - chr3_3:90312189-90312208 None:intergenic 55.0%
AGTTTGCCATCGGGGTAGCG+GGG - chr3_3:90310683-90310702 None:intergenic 60.0%
GAGTTTGCCATCGGGGTAGC+GGG - chr3_3:90310684-90310703 None:intergenic 60.0%
GGAGTTTGCCATCGGGGTAG+CGG - chr3_3:90310685-90310704 None:intergenic 60.0%
GGCAAACTCCGTTACCTCGG+TGG + chr3_3:90310695-90310714 Msa0482810:CDS 60.0%
CGACGGAGAGAACGCGAGTA+TGG - chr3_3:90310721-90310740 None:intergenic 60.0%
AATGTTCCTCTGCCGCGCAG+CGG + chr3_3:90311277-90311296 Msa0482810:CDS 60.0%
GGTGGGCACCCAAACCTTTG+TGG - chr3_3:90312110-90312129 None:intergenic 60.0%
AGTTTGCCATCGGGGTAGCG+GGG - chr3_3:90310683-90310702 None:intergenic 60.0%
GAGTTTGCCATCGGGGTAGC+GGG - chr3_3:90310684-90310703 None:intergenic 60.0%
GGAGTTTGCCATCGGGGTAG+CGG - chr3_3:90310685-90310704 None:intergenic 60.0%
GGCAAACTCCGTTACCTCGG+TGG + chr3_3:90310695-90310714 Msa0482810:CDS 60.0%
CGACGGAGAGAACGCGAGTA+TGG - chr3_3:90310721-90310740 None:intergenic 60.0%
AATGTTCCTCTGCCGCGCAG+CGG + chr3_3:90311277-90311296 Msa0482810:CDS 60.0%
GGTGGGCACCCAAACCTTTG+TGG - chr3_3:90312110-90312129 None:intergenic 60.0%
CGGACTCTCCGAACCCGCTT+CGG + chr3_3:90310604-90310623 Msa0482810:CDS 65.0%
GGACTCTCCGAACCCGCTTC+GGG + chr3_3:90310605-90310624 Msa0482810:CDS 65.0%
! GGGAGAACCCGAAGCGGGTT+CGG - chr3_3:90310615-90310634 None:intergenic 65.0%
! GTTTGCCATCGGGGTAGCGG+GGG - chr3_3:90310682-90310701 None:intergenic 65.0%
GAACGCGAGTATGGCCACCG+AGG - chr3_3:90310712-90310731 None:intergenic 65.0%
!! GAAGAGGGGGTGGGGTACTG+GGG - chr3_3:90312131-90312150 None:intergenic 65.0%
! GGAAGAGGGGGTGGGGTACT+GGG - chr3_3:90312132-90312151 None:intergenic 65.0%
TGGAAGAGGGGGTGGGGTAC+TGG - chr3_3:90312133-90312152 None:intergenic 65.0%
CGGACTCTCCGAACCCGCTT+CGG + chr3_3:90310604-90310623 Msa0482810:CDS 65.0%
GGACTCTCCGAACCCGCTTC+GGG + chr3_3:90310605-90310624 Msa0482810:CDS 65.0%
! GGGAGAACCCGAAGCGGGTT+CGG - chr3_3:90310615-90310634 None:intergenic 65.0%
! GTTTGCCATCGGGGTAGCGG+GGG - chr3_3:90310682-90310701 None:intergenic 65.0%
GAACGCGAGTATGGCCACCG+AGG - chr3_3:90310712-90310731 None:intergenic 65.0%
!! GAAGAGGGGGTGGGGTACTG+GGG - chr3_3:90312131-90312150 None:intergenic 65.0%
! GGAAGAGGGGGTGGGGTACT+GGG - chr3_3:90312132-90312151 None:intergenic 65.0%
TGGAAGAGGGGGTGGGGTAC+TGG - chr3_3:90312133-90312152 None:intergenic 65.0%
ATCCTCCCCCGCTACCCCGA+TGG + chr3_3:90310674-90310693 Msa0482810:CDS 70.0%
TGGTAACCGCTGCGCGGCAG+AGG - chr3_3:90311286-90311305 None:intergenic 70.0%
!! AGGGGGTGGGGTACTGGGGT+GGG - chr3_3:90312127-90312146 None:intergenic 70.0%
ATCCTCCCCCGCTACCCCGA+TGG + chr3_3:90310674-90310693 Msa0482810:CDS 70.0%
TGGTAACCGCTGCGCGGCAG+AGG - chr3_3:90311286-90311305 None:intergenic 70.0%
!! AGGGGGTGGGGTACTGGGGT+GGG - chr3_3:90312127-90312146 None:intergenic 70.0%
!! TGCCATCGGGGTAGCGGGGG+AGG - chr3_3:90310679-90310698 None:intergenic 75.0%
!! GAGGGGGTGGGGTACTGGGG+TGG - chr3_3:90312128-90312147 None:intergenic 75.0%
!! TGCCATCGGGGTAGCGGGGG+AGG - chr3_3:90310679-90310698 None:intergenic 75.0%
!! GAGGGGGTGGGGTACTGGGG+TGG - chr3_3:90312128-90312147 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 90310469 90312316 90310469 ID=Msa0482810;Name=Msa0482810
chr3_3 mRNA 90310469 90312316 90310469 ID=Msa0482810-mRNA-1;Parent=Msa0482810;Name=Msa0482810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130|1|1|1|0.5|0.33|3|663|223
chr3_3 exon 90310469 90310761 90310469 ID=Msa0482810-mRNA-1:exon:26365;Parent=Msa0482810-mRNA-1
chr3_3 exon 90310855 90311747 90310855 ID=Msa0482810-mRNA-1:exon:26366;Parent=Msa0482810-mRNA-1
chr3_3 exon 90312038 90312316 90312038 ID=Msa0482810-mRNA-1:exon:26367;Parent=Msa0482810-mRNA-1
chr3_3 five_prime_UTR 90310469 90310598 90310469 ID=Msa0482810-mRNA-1:five_prime_utr;Parent=Msa0482810-mRNA-1
chr3_3 CDS 90310599 90310761 90310599 ID=Msa0482810-mRNA-1:cds;Parent=Msa0482810-mRNA-1
chr3_3 CDS 90310855 90311363 90310855 ID=Msa0482810-mRNA-1:cds;Parent=Msa0482810-mRNA-1
chr3_3 three_prime_UTR 90311364 90311747 90311364 ID=Msa0482810-mRNA-1:three_prime_utr;Parent=Msa0482810-mRNA-1
chr3_3 three_prime_UTR 90312038 90312316 90312038 ID=Msa0482810-mRNA-1:three_prime_utr;Parent=Msa0482810-mRNA-1
Gene Sequence

>Msa0482810

ATGATCGGACTCTCCGAACCCGCTTCGGGTTCTCCCAAATCCACCATCAAATTCCTCTGTAGCTATGGTGGCAAAATCCTCCCCCGCTACCCCGATGGCAAACTCCGTTACCTCGGTGGCCATACTCGCGTTCTCTCCGTCGATCGCTCTATCCAATTTTCCGAACTGCTATTGAAGCTGGAAGAGCTCTGCAGTTCATCCGTGACGCAACTTCGCTGTCAGTTACCTGCTGAAGACCTCGACGCTTTGGTTTCCATCACCTCCGACGAAGATCTCATCAATCTAATCGAAGAATACGATCGTACAGCATCACCACAATCACCGTTAAAGATCAAAGCCTTCATTTCTCCACCAAGATCTTCAAACAAAGCTTCTAAACCTCCGTTACCGTTTCTGTCAAAATCAGCATCTGTCTCTTCATCATCCTCCGTGTCATCAACGTCGTCTTCATCATCGTATAGCAGCCTTAATGGTGGAGGTTCCAGCCAGAAGCACATGATGGAGCAGCCTGTAGTTTACCGATGTGTTCATCATATGTCACAACAGACTGTGAATCAGGGAAACATTGAGAGATTGTCTGGGAGGAATGTTCCTCTGCCGCGCAGCGGTTACCAATCACAGAGGAACACTGATCAAAATTATCTGATTCACAACGGCAACCACTGGCAATAA
Protein sequence

>Msa0482810

MIGLSEPASGSPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSVDRSIQFSELLLKLEELCSSSVTQLRCQLPAEDLDALVSITSDEDLINLIEEYDRTASPQSPLKIKAFISPPRSSNKASKPPLPFLSKSASVSSSSSVSSTSSSSSYSSLNGGGSSQKHMMEQPVVYRCVHHMSQQTVNQGNIERLSGRNVPLPRSGYQSQRNTDQNYLIHNGNHWQ*