AlfalfaGEDB | Msa0763170

M. sativa cultivar zhongmu-4 / Msa0763170

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0763170	XP_003612825.1	97.264	402	7	3	1	398	1	402	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0763170	sp\|Q9C616\|KAN2_ARATH	54.327	416	140	15	1	396	1	386	5.20e-99	303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0763170	G7KCD8	97.264	402	7	3	1	398	1	402	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
Msa0763170	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0763170	Msa0802860	0.825967	3.511837e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0763170	MtrunA17_Chr5g0410741	97.264	402	7	3	1	398	1	402	0.0	787
Msa0763170	MtrunA17_Chr8g0366281	57.320	403	113	17	1	395	1	352	2.23e-122	358
Msa0763170	MtrunA17_Chr3g0109981	52.273	220	65	9	197	397	256	454	3.37e-51	178
Msa0763170	MtrunA17_Chr1g0154261	46.032	189	72	7	209	397	120	278	3.87e-37	136
Msa0763170	MtrunA17_Chr6g0479431	76.744	86	18	1	197	280	182	267	1.87e-36	136
Msa0763170	MtrunA17_Chr7g0243081	44.737	114	47	2	182	287	46	151	8.70e-23	98.6
Msa0763170	MtrunA17_Chr1g0210911	48.571	105	46	4	214	312	21	123	4.64e-21	93.2
Msa0763170	MtrunA17_Chr1g0162931	65.517	58	20	0	214	271	17	74	6.40e-21	92.0
Msa0763170	MtrunA17_Chr2g0320231	68.966	58	18	0	214	271	96	153	1.16e-19	89.7
Msa0763170	MtrunA17_Chr8g0379121	64.062	64	22	1	214	277	110	172	2.59e-19	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0763170	AT1G32240.1	54.327	416	140	15	1	396	1	386	5.28e-100	303
Msa0763170	AT1G32240.2	53.784	370	125	12	1	352	1	342	2.86e-91	280
Msa0763170	AT4G17695.1	39.225	413	140	14	1	397	1	318	4.54e-62	203
Msa0763170	AT5G16560.1	38.462	377	149	15	76	397	50	398	2.54e-48	169
Msa0763170	AT1G32240.3	61.589	151	42	7	250	396	1	139	7.53e-39	136
Msa0763170	AT5G42630.2	62.617	107	40	0	210	316	100	206	1.44e-35	130
Msa0763170	AT5G42630.1	59.664	119	47	1	210	327	100	218	2.31e-35	131
Msa0763170	AT2G38300.1	55.000	80	35	1	208	287	48	126	4.52e-21	94.0
Msa0763170	AT2G02060.2	72.222	54	15	0	215	268	29	82	4.66e-20	89.4
Msa0763170	AT2G02060.1	72.222	54	15	0	215	268	29	82	4.66e-20	89.4

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Find 111 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTTCTTGAACTAA+TGG	0.321394	5_2:-21944985	Msa0763170:CDS
AAACAAAACACTAGTTGTTT+TGG	0.258060	5_2:-21946045	Msa0763170:five_prime_UTR
AAACCAAAGGTTGATTCTAT+TGG	0.242636	5_2:-21942325	Msa0763170:CDS
AAACTCTTTATCATCATCAA+TGG	0.438055	5_2:-21945851	Msa0763170:CDS
AAAGAAACCTAATTTGGATT+TGG	0.275662	5_2:-21941014	Msa0763170:CDS
AAAGAAGCATGAGAGCTCCA+AGG	0.647856	5_2:-21945369	Msa0763170:CDS
AAAGACAAATCTGGTTGTGC+TGG	0.558095	5_2:+21945985	None:intergenic
AAAGAGACGTGAGAGAGAGA+GGG	0.539683	5_2:-21940632	Msa0763170:three_prime_UTR
AAATCCAAATTAGGTTTCTT+TGG	0.203381	5_2:+21941016	None:intergenic
AAATTATATATAGAGACAGT+TGG	0.526063	5_2:+21946182	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATATAGAGACAGTTGGA+AGG	+	chr5_2:21940768-21940787	None:intergenic	30.0%
AACCAACAACAACAAGTAAT+TGG	-	chr5_2:21941012-21941031	Msa0763170:CDS	30.0%
TAAACAGGAATTCCTCTAAT+AGG	+	chr5_2:21941377-21941396	None:intergenic	30.0%
TCAAAGCTTGAGATTGAAAA+GGG	+	chr5_2:21941529-21941548	None:intergenic	30.0%
ATCAAAGCTTGAGATTGAAA+AGG	+	chr5_2:21941530-21941549	None:intergenic	30.0%
TTCTTTAGTCAGATTGAAGA+TGG	-	chr5_2:21942122-21942141	Msa0763170:intron	30.0%
TAGGCTACATTATACATTAG+AGG	-	chr5_2:21942182-21942201	Msa0763170:intron	30.0%
GAATTTGAGAAAGAAGTCAA+AGG	+	chr5_2:21942697-21942716	None:intergenic	30.0%
AAGAGATCATTGAGTAATGA+TGG	+	chr5_2:21942832-21942851	None:intergenic	30.0%
CAAGTAACAACTTTACTTAG+AGG	-	chr5_2:21943006-21943025	Msa0763170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	21940539	21946434	21940539	ID=Msa0763170;Name=Msa0763170
chr5_2	mRNA	21940539	21946434	21940539	ID=Msa0763170-mRNA-1;Parent=Msa0763170;Name=Msa0763170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=415\|1\|1\|1\|1\|1\|6\|449\|398
chr5_2	exon	21940539	21941116	21940539	ID=Msa0763170-mRNA-1:exon:9101;Parent=Msa0763170-mRNA-1
chr5_2	exon	21942306	21942366	21942306	ID=Msa0763170-mRNA-1:exon:9100;Parent=Msa0763170-mRNA-1
chr5_2	exon	21943463	21943628	21943463	ID=Msa0763170-mRNA-1:exon:9099;Parent=Msa0763170-mRNA-1
chr5_2	exon	21943756	21943801	21943756	ID=Msa0763170-mRNA-1:exon:9098;Parent=Msa0763170-mRNA-1
chr5_2	exon	21944941	21945017	21944941	ID=Msa0763170-mRNA-1:exon:9097;Parent=Msa0763170-mRNA-1
chr5_2	exon	21945302	21946434	21945302	ID=Msa0763170-mRNA-1:exon:9096;Parent=Msa0763170-mRNA-1
chr5_2	five_prime_UTR	21946020	21946434	21946020	ID=Msa0763170-mRNA-1:five_prime_utr;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21945302	21946019	21945302	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21944941	21945017	21944941	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21943756	21943801	21943756	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21943463	21943628	21943463	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21942306	21942366	21942306	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	CDS	21940988	21941116	21940988	ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2	three_prime_UTR	21940539	21940987	21940539	ID=Msa0763170-mRNA-1:three_prime_utr;Parent=Msa0763170-mRNA-1

Gene Sequence

>Msa0763170

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACAAAACCAACAACAACAAGTAATTGGAAGAGAACAACAAACACAGAAGAGGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACGTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTTTCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTACTACTACTACACCTTCTTCTATTTCTAACACCAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCAGTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA

Protein sequence

>Msa0763170

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTNTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPFQSFHQNHYFQHPQPLFQHHQPQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNLNHLHILDGTTTTPSSISNTNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSSKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL*