AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763170 MtrunA17_Chr5g0410741 97.264 402 7 3 1 398 1 402 0.0 787
Msa0763170 MtrunA17_Chr8g0366281 57.320 403 113 17 1 395 1 352 2.23e-122 358
Msa0763170 MtrunA17_Chr3g0109981 52.273 220 65 9 197 397 256 454 3.37e-51 178
Msa0763170 MtrunA17_Chr1g0154261 46.032 189 72 7 209 397 120 278 3.87e-37 136
Msa0763170 MtrunA17_Chr6g0479431 76.744 86 18 1 197 280 182 267 1.87e-36 136
Msa0763170 MtrunA17_Chr7g0243081 44.737 114 47 2 182 287 46 151 8.70e-23 98.6
Msa0763170 MtrunA17_Chr1g0210911 48.571 105 46 4 214 312 21 123 4.64e-21 93.2
Msa0763170 MtrunA17_Chr1g0162931 65.517 58 20 0 214 271 17 74 6.40e-21 92.0
Msa0763170 MtrunA17_Chr2g0320231 68.966 58 18 0 214 271 96 153 1.16e-19 89.7
Msa0763170 MtrunA17_Chr8g0379121 64.062 64 22 1 214 277 110 172 2.59e-19 89.4
Msa0763170 MtrunA17_Chr7g0261911 61.905 63 24 0 209 271 256 318 9.80e-18 84.7
Msa0763170 MtrunA17_Chr1g0190301 63.333 60 22 0 212 271 172 231 3.57e-17 82.4
Msa0763170 MtrunA17_Chr2g0288601 64.407 59 20 1 208 266 65 122 4.64e-17 77.0
Msa0763170 MtrunA17_Chr3g0095611 58.929 56 23 0 216 271 20 75 7.02e-17 79.0
Msa0763170 MtrunA17_Chr5g0409731 69.811 53 16 0 216 268 26 78 8.12e-17 80.5
Msa0763170 MtrunA17_Chr7g0274471 64.286 56 20 0 216 271 219 274 1.43e-16 81.3
Msa0763170 MtrunA17_Chr2g0283951 55.405 74 28 2 214 283 88 160 2.62e-16 79.7
Msa0763170 MtrunA17_Chr7g0258551 60.000 55 22 0 217 271 214 268 4.09e-16 79.3
Msa0763170 MtrunA17_Chr5g0417521 44.872 78 43 0 216 293 16 93 1.20e-15 77.8
Msa0763170 MtrunA17_Chr7g0254981 61.818 55 21 0 217 271 52 106 1.31e-15 76.6
Msa0763170 MtrunA17_Chr2g0291021 50.649 77 36 1 217 293 51 125 1.85e-15 77.0
Msa0763170 MtrunA17_Chr1g0175091 60.000 55 22 0 217 271 260 314 1.95e-15 77.4
Msa0763170 MtrunA17_Chr1g0197171 58.333 60 25 0 216 275 45 104 3.48e-15 75.5
Msa0763170 MtrunA17_Chr2g0321461 58.929 56 23 0 216 271 46 101 3.53e-15 76.6
Msa0763170 MtrunA17_Chr8g0356501 58.929 56 23 0 216 271 38 93 4.31e-15 75.9
Msa0763170 MtrunA17_Chr2g0310011 58.929 56 23 0 216 271 36 91 5.06e-15 75.9
Msa0763170 MtrunA17_Chr2g0290991 50.000 74 34 1 216 286 40 113 7.05e-15 75.1
Msa0763170 MtrunA17_Chr6g0461641 56.140 57 25 0 216 272 43 99 1.68e-14 74.7
Msa0763170 MtrunA17_Chr4g0042451 54.386 57 26 0 216 272 18 74 6.66e-14 72.4
Msa0763170 MtrunA17_Chr1g0175081 50.909 55 27 0 217 271 24 78 3.90e-12 62.4
Msa0763170 MtrunA17_Chr7g0242521 46.341 82 37 2 217 291 15 96 5.02e-12 65.5
Msa0763170 MtrunA17_Chr1g0175071 52.830 53 25 0 217 269 179 231 6.03e-12 66.2
Msa0763170 MtrunA17_Chr7g0258531 39.535 86 49 1 217 302 215 297 9.65e-12 65.9
Msa0763170 MtrunA17_Chr2g0304841 43.210 81 39 2 212 286 210 289 1.90e-11 65.9
Msa0763170 MtrunA17_Chr4g0045361 51.282 78 34 2 214 289 273 348 2.31e-11 65.1
Msa0763170 MtrunA17_Chr4g0062921 54.545 55 25 0 214 268 234 288 4.53e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763170 AT1G32240.1 54.327 416 140 15 1 396 1 386 5.28e-100 303
Msa0763170 AT1G32240.2 53.784 370 125 12 1 352 1 342 2.86e-91 280
Msa0763170 AT4G17695.1 39.225 413 140 14 1 397 1 318 4.54e-62 203
Msa0763170 AT5G16560.1 38.462 377 149 15 76 397 50 398 2.54e-48 169
Msa0763170 AT1G32240.3 61.589 151 42 7 250 396 1 139 7.53e-39 136
Msa0763170 AT5G42630.2 62.617 107 40 0 210 316 100 206 1.44e-35 130
Msa0763170 AT5G42630.1 59.664 119 47 1 210 327 100 218 2.31e-35 131
Msa0763170 AT2G38300.1 55.000 80 35 1 208 287 48 126 4.52e-21 94.0
Msa0763170 AT2G02060.2 72.222 54 15 0 215 268 29 82 4.66e-20 89.4
Msa0763170 AT2G02060.1 72.222 54 15 0 215 268 29 82 4.66e-20 89.4
Msa0763170 AT1G14600.1 66.102 59 20 0 215 273 23 81 9.93e-20 88.2
Msa0763170 AT4G04605.1 65.517 58 20 0 214 271 13 70 1.13e-19 87.4
Msa0763170 AT5G45580.1 49.038 104 44 3 216 311 8 110 3.97e-19 87.0
Msa0763170 AT5G45580.2 49.038 104 44 3 216 311 24 126 6.60e-19 86.7
Msa0763170 AT2G40260.1 62.687 67 24 1 208 274 76 141 1.51e-18 87.4
Msa0763170 AT4G04580.1 59.322 59 24 0 216 274 15 73 4.74e-18 81.3
Msa0763170 AT2G42660.1 66.071 56 19 0 216 271 51 106 7.81e-18 82.8
Msa0763170 AT4G04555.1 53.425 73 31 2 199 271 1 70 5.49e-17 76.6
Msa0763170 AT4G28610.1 65.455 55 19 0 217 271 227 281 3.39e-16 80.1
Msa0763170 AT3G12730.1 62.500 56 21 0 216 271 24 79 4.87e-16 77.4
Msa0763170 AT5G29000.4 52.778 72 34 0 217 288 233 304 1.19e-15 77.8
Msa0763170 AT2G01060.1 63.636 55 20 0 217 271 17 71 1.52e-15 77.0
Msa0763170 AT3G04450.3 56.250 64 28 0 208 271 231 294 1.77e-15 77.0
Msa0763170 AT3G04450.4 54.286 70 31 1 203 271 185 254 2.72e-15 77.4
Msa0763170 AT3G04450.2 54.286 70 31 1 203 271 185 254 2.72e-15 77.4
Msa0763170 AT3G04450.1 54.286 70 31 1 203 271 225 294 3.00e-15 77.4
Msa0763170 AT3G24120.2 62.264 53 20 0 216 268 42 94 3.16e-15 76.3
Msa0763170 AT3G24120.1 62.264 53 20 0 216 268 42 94 3.18e-15 76.3
Msa0763170 AT5G29000.1 54.545 66 30 0 217 282 190 255 3.30e-15 77.0
Msa0763170 AT5G29000.3 54.545 66 30 0 217 282 190 255 3.30e-15 77.0
Msa0763170 AT5G29000.2 54.545 66 30 0 217 282 233 298 4.66e-15 76.6
Msa0763170 AT1G79430.2 58.929 56 23 0 216 271 35 90 5.05e-15 76.3
Msa0763170 AT4G13640.2 60.377 53 21 0 216 268 38 90 1.07e-14 74.7
Msa0763170 AT4G13640.1 60.377 53 21 0 216 268 38 90 1.13e-14 74.3
Msa0763170 AT5G06800.3 50.794 63 31 0 209 271 186 248 2.35e-14 73.2
Msa0763170 AT5G18240.2 55.357 56 25 0 216 271 46 101 4.29e-14 73.9
Msa0763170 AT5G18240.3 55.357 56 25 0 216 271 46 101 4.29e-14 73.9
Msa0763170 AT3G04030.1 53.571 56 26 0 216 271 46 101 4.65e-14 73.6
Msa0763170 AT5G18240.5 55.357 56 25 0 216 271 46 101 4.79e-14 73.6
Msa0763170 AT5G18240.1 55.357 56 25 0 216 271 46 101 4.88e-14 73.6
Msa0763170 AT5G18240.4 55.357 56 25 0 216 271 46 101 4.88e-14 73.6
Msa0763170 AT3G04030.3 53.571 56 26 0 216 271 46 101 5.34e-14 73.6
Msa0763170 AT2G20400.2 63.636 55 20 0 217 271 233 287 6.59e-14 73.2
Msa0763170 AT2G20400.1 63.636 55 20 0 217 271 233 287 6.62e-14 73.2
Msa0763170 AT5G06800.1 56.364 55 24 0 217 271 194 248 9.10e-14 72.8
Msa0763170 AT5G06800.2 56.364 55 24 0 217 271 194 248 9.34e-14 72.8
Msa0763170 AT3G13040.3 54.688 64 29 0 208 271 234 297 1.06e-13 72.8
Msa0763170 AT3G13040.1 54.688 64 29 0 208 271 234 297 1.06e-13 72.8
Msa0763170 AT3G13040.2 54.688 64 29 0 208 271 234 297 1.06e-13 72.8
Msa0763170 AT2G06020.1 55.738 61 27 0 217 277 88 148 1.70e-13 71.2
Msa0763170 AT1G69580.1 50.877 57 28 0 216 272 35 91 9.14e-13 69.3
Msa0763170 AT1G69580.2 50.877 57 28 0 216 272 35 91 1.01e-12 69.3
Msa0763170 AT3G04030.2 51.786 56 26 1 216 271 46 100 1.42e-11 65.9
Msa0763170 AT2G03500.1 53.448 58 27 0 211 268 229 286 3.57e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTATTTCCACTATTT+TGG 0.109662 5_2:+21945722 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5_2:+21944987 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5_2:+21941016 None:intergenic
TGATCTTCCTTGCTGCTTAC+TGG 0.212519 5_2:+21943513 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5_2:+21941007 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5_2:-21941020 Msa0763170:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5_2:-21943477 Msa0763170:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5_2:-21942325 Msa0763170:CDS
GGTGGTGTTGTTGTGGTTGA+TGG 0.254980 5_2:+21945632 None:intergenic
AAGAAAGAAAGAAAAGTAAA+AGG 0.256742 5_2:-21940839 Msa0763170:three_prime_UTR
AAACAAAACACTAGTTGTTT+TGG 0.258060 5_2:-21946045 Msa0763170:five_prime_UTR
AGGAAATGGATTTGGGGTTT+TGG 0.258801 5_2:-21945894 Msa0763170:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5_2:-21945939 Msa0763170:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5_2:-21941014 Msa0763170:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5_2:+21945937 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5_2:-21945313 Msa0763170:CDS
CAAGCATTCAATCAAGTTGA+TGG 0.292669 5_2:+21946300 None:intergenic
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5_2:+21945599 None:intergenic
CACAGAAGAGGAAATGGATT+TGG 0.299354 5_2:-21945902 Msa0763170:CDS
ACAGAAGAGGAAATGGATTT+GGG 0.314344 5_2:-21945901 Msa0763170:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5_2:-21944985 Msa0763170:CDS
AATCATCTTCATATTCTTGA+TGG 0.327427 5_2:-21945499 Msa0763170:CDS
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5_2:-21944940 Msa0763170:intron
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5_2:+21941017 None:intergenic
TTTGAATCTAAAGGCTTTGT+TGG 0.343931 5_2:+21945784 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5_2:+21941032 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5_2:+21945611 None:intergenic
CTAATTTGCAAAGACAAATC+TGG 0.371942 5_2:+21945976 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5_2:+21941082 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5_2:+21945651 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5_2:+21945577 None:intergenic
GAAGATGAAGCATACTTTCA+TGG 0.395573 5_2:+21945287 None:intergenic
TGAAGTTGAGGGAATGATAA+AGG 0.400321 5_2:+21945541 None:intergenic
CATCATCACTTCCAAAATAG+TGG 0.402204 5_2:-21945733 Msa0763170:CDS
AACAAACACAGAAGAGGAAA+TGG 0.404086 5_2:-21945908 Msa0763170:CDS
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5_2:-21943462 Msa0763170:intron
AGTTCATCTACAAACCTATC+AGG 0.408228 5_2:-21941046 Msa0763170:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5_2:+21945614 None:intergenic
CTAACACAATGAACTCTGAT+AGG 0.418494 5_2:+21940735 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5_2:+21942322 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5_2:-21943595 Msa0763170:CDS
AGGGCTTGAACTTGTGTTGT+TGG 0.429127 5_2:+21945444 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5_2:-21942349 Msa0763170:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5_2:+21945424 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5_2:-21945851 Msa0763170:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5_2:-21943484 Msa0763170:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5_2:+21945650 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5_2:+21945425 None:intergenic
TTTGATGAAAAGATTGAAAA+GGG 0.455613 5_2:+21945692 None:intergenic
AGGTGTAATTAATAATTGAT+TGG 0.458486 5_2:+21946236 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5_2:+21945652 None:intergenic
GATTTAAGATTGAGAGAGGA+AGG 0.463601 5_2:+21946343 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5_2:-21945610 Msa0763170:CDS
TGAGGGAATGATAAAGGAGG+AGG 0.480787 5_2:+21945547 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5_2:+21945530 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.484429 5_2:+21945352 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5_2:-21942357 Msa0763170:intron
AGACAGTTGGAAGGTTAGCT+AGG 0.490441 5_2:+21946195 None:intergenic
GAAAGAGACGTGAGAGAGAG+AGG 0.492090 5_2:-21940633 Msa0763170:three_prime_UTR
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5_2:+21940984 None:intergenic
ATGAGATTTAAGATTGAGAG+AGG 0.506309 5_2:+21946339 None:intergenic
TAAAAGTATGAAGTGATCCT+TGG 0.507777 5_2:-21940592 Msa0763170:three_prime_UTR
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5_2:-21943755 Msa0763170:intron
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5_2:-21943494 Msa0763170:CDS
GTGATCCTTGGTAATTGTAA+TGG 0.517963 5_2:-21940580 Msa0763170:three_prime_UTR
TGATTATGATTATGAAGTTG+AGG 0.522631 5_2:+21945529 None:intergenic
CACAATGAACTCTGATAGGA+AGG 0.524152 5_2:+21940739 None:intergenic
AAATTATATATAGAGACAGT+TGG 0.526063 5_2:+21946182 None:intergenic
AAGCTTTGGTGGTGTTGTTG+TGG 0.526343 5_2:+21945625 None:intergenic
TTGGTGTTAGAAATAGAAGA+AGG 0.535565 5_2:+21945463 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5_2:-21941001 Msa0763170:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5_2:+21945646 None:intergenic
AAAGAGACGTGAGAGAGAGA+GGG 0.539683 5_2:-21940632 Msa0763170:three_prime_UTR
GTGTTGTTGTTTGAATCTAA+AGG 0.539883 5_2:+21945775 None:intergenic
CAGAAAGCAACAAAAGAAGA+GGG 0.541966 5_2:-21940782 Msa0763170:three_prime_UTR
AGAGTTAGAGCAATGGAAGC+TGG 0.543410 5_2:-21940898 Msa0763170:three_prime_UTR
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5_2:-21945420 Msa0763170:CDS
ACAGAAAGCAACAAAAGAAG+AGG 0.548854 5_2:-21940783 Msa0763170:three_prime_UTR
GAGGGAATGATAAAGGAGGA+GGG 0.550824 5_2:+21945548 None:intergenic
TGAGAGCTCCAAGGATGCGT+TGG 0.554044 5_2:-21945360 Msa0763170:CDS
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5_2:-21945310 Msa0763170:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5_2:+21945985 None:intergenic
AGAAAGCAACAAAAGAAGAG+GGG 0.560782 5_2:-21940781 Msa0763170:three_prime_UTR
TGGAAACATGCAATCTCTTG+AGG 0.562071 5_2:-21942305 Msa0763170:intron
GAGAACAACAAACACAGAAG+AGG 0.568948 5_2:-21945914 Msa0763170:CDS
GGAAGTGATGATGATGAATG+AGG 0.577883 5_2:+21945743 None:intergenic
TCTTGAACTAATGGATGTGA+AGG 0.578980 5_2:-21944976 Msa0763170:CDS
GAAAGCAACAAAAGAAGAGG+GGG 0.581868 5_2:-21940780 Msa0763170:three_prime_UTR
TTGTTGGATTTGAAAGAGAG+AGG 0.584330 5_2:+21945800 None:intergenic
CAGAAGAGGAAATGGATTTG+GGG 0.591791 5_2:-21945900 Msa0763170:CDS
CTAGGTTAGAGACTGCAAGA+TGG 0.596830 5_2:+21946213 None:intergenic
TGTGTGTAGATAGCAAAAGA+TGG 0.596942 5_2:-21946016 Msa0763170:exon
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5_2:+21940985 None:intergenic
AAGAGACGTGAGAGAGAGAG+GGG 0.600034 5_2:-21940631 Msa0763170:three_prime_UTR
TTGGTTACATGGTAAACCAA+AGG 0.600087 5_2:-21942338 Msa0763170:CDS
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5_2:+21940978 None:intergenic
AACTGAAAGAGTTAGAGCAA+TGG 0.615451 5_2:-21940905 Msa0763170:three_prime_UTR
TATATATAGAGACAGTTGGA+AGG 0.615614 5_2:+21946186 None:intergenic
AGTTGAGGGAATGATAAAGG+AGG 0.618652 5_2:+21945544 None:intergenic
CAATCTGATGTATACGACAA+TGG 0.619241 5_2:-21943604 Msa0763170:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5_2:-21943767 Msa0763170:CDS
GACAAGGTATGTGAAGTGAA+TGG 0.622730 5_2:+21946398 None:intergenic
TTAAATCCAGATGTATCGGA+CGG 0.625352 5_2:-21943789 Msa0763170:intron
GGTTAGAGACTGCAAGATGG+AGG 0.645066 5_2:+21946216 None:intergenic
AAAGAAGCATGAGAGCTCCA+AGG 0.647856 5_2:-21945369 Msa0763170:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5_2:-21941070 Msa0763170:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5_2:+21945653 None:intergenic
GATTTATCCAGTAAGCAGCA+AGG 0.675332 5_2:-21943520 Msa0763170:CDS
GTGCTCCATTACAATTACCA+AGG 0.676755 5_2:+21940575 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5_2:+21940974 None:intergenic
GAGCTAAAGAAAGAAACACG+AGG 0.718935 5_2:-21940817 Msa0763170:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTTTTTTAT+CGG + chr5_2:21942658-21942677 None:intergenic 0.0%
!!! CTTAAAAATATATTTCTTTT+TGG - chr5_2:21941699-21941718 Msa0763170:intron 10.0%
!! TTAATGATGTTTAAATTTAT+AGG - chr5_2:21942163-21942182 Msa0763170:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG - chr5_2:21943081-21943100 Msa0763170:intron 10.0%
!! ATATAAATTATCATATAGTA+TGG + chr5_2:21945081-21945100 None:intergenic 10.0%
!! TTTATATACACAAAAATAAT+TGG - chr5_2:21945162-21945181 Msa0763170:intron 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG - chr5_2:21945723-21945742 Msa0763170:CDS 10.0%
!!! AAAAATATAATATGTTGATT+TGG + chr5_2:21946244-21946263 None:intergenic 10.0%
!!! AATAGTAGAATTTTTTTGTA+AGG + chr5_2:21940803-21940822 None:intergenic 15.0%
!!! GAAATATATTTTTAAGAAAG+TGG + chr5_2:21941695-21941714 None:intergenic 15.0%
!! ATAATTAAGCTAGAATAAAA+AGG + chr5_2:21941743-21941762 None:intergenic 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG + chr5_2:21941767-21941786 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG + chr5_2:21941768-21941787 None:intergenic 15.0%
!! ATATTAATTTCAAATTCCAA+TGG - chr5_2:21942222-21942241 Msa0763170:intron 15.0%
!!! GATTTTATATTCTTTTAAGT+TGG + chr5_2:21942371-21942390 None:intergenic 15.0%
!!! TCAATTCGAATATATTTTTT+TGG + chr5_2:21942564-21942583 None:intergenic 15.0%
!! AAAAAAATATATTCGAATTG+AGG - chr5_2:21942563-21942582 Msa0763170:intron 15.0%
!! TTCTATCATATATTAATTGT+TGG - chr5_2:21943235-21943254 Msa0763170:intron 15.0%
!! AGTATAAAAAAAAGGATTAT+AGG + chr5_2:21943542-21943561 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG + chr5_2:21944226-21944245 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG + chr5_2:21944411-21944430 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG - chr5_2:21944416-21944435 Msa0763170:intron 15.0%
!!! AATAACTTTTTCAAAACAAA+AGG + chr5_2:21944706-21944725 None:intergenic 15.0%
!! AGAAAAAAGAAAGAAAAAAA+AGG - chr5_2:21944847-21944866 Msa0763170:intron 15.0%
!!! AATTAATAACTTTTAACTAG+AGG + chr5_2:21944981-21945000 None:intergenic 15.0%
!!! TTATATAGTCATTTTCAATA+TGG + chr5_2:21945006-21945025 None:intergenic 15.0%
!! AAGAATATTTATATGAATGA+GGG + chr5_2:21945264-21945283 None:intergenic 15.0%
!! AAAGAATATTTATATGAATG+AGG + chr5_2:21945265-21945284 None:intergenic 15.0%
!! TACAAAAAAAAAATGGAAAA+GGG + chr5_2:21945782-21945801 None:intergenic 15.0%
!! TTACAAAAAAAAAATGGAAA+AGG + chr5_2:21945783-21945802 None:intergenic 15.0%
!!! CAACATATTATATTTTTCTT+TGG - chr5_2:21946247-21946266 Msa0763170:five_prime_UTR 15.0%
!! AGGTGTAATTAATAATTGAT+TGG + chr5_2:21940718-21940737 None:intergenic 20.0%
!! AAATTATATATAGAGACAGT+TGG + chr5_2:21940772-21940791 None:intergenic 20.0%
!!! CATTATTATTTCCACTATTT+TGG + chr5_2:21941232-21941251 None:intergenic 20.0%
!! TTTGATGAAAAGATTGAAAA+GGG + chr5_2:21941262-21941281 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGAAA+AGG + chr5_2:21941263-21941282 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG - chr5_2:21941800-21941819 Msa0763170:intron 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG + chr5_2:21942041-21942060 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG + chr5_2:21942367-21942386 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG + chr5_2:21942491-21942510 None:intergenic 20.0%
!!! GAATATATTTTTTTGGTACT+TGG + chr5_2:21942557-21942576 None:intergenic 20.0%
!!! TTTTATAATATGCATATGCA+TGG + chr5_2:21942922-21942941 None:intergenic 20.0%
!! ATATTATTATTACACCATCA+TGG + chr5_2:21944105-21944124 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG + chr5_2:21944237-21944256 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG + chr5_2:21944351-21944370 None:intergenic 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG + chr5_2:21944481-21944500 None:intergenic 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG - chr5_2:21944479-21944498 Msa0763170:intron 20.0%
!! AAAAAGAAAAGCAAAACTTA+AGG + chr5_2:21944540-21944559 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG + chr5_2:21945385-21945404 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG + chr5_2:21945386-21945405 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+CGG + chr5_2:21945604-21945623 None:intergenic 20.0%
!!! ATATATTTTTTCAGAAGCTA+GGG + chr5_2:21945996-21946015 None:intergenic 20.0%
!!! AATATATTTTTTCAGAAGCT+AGG + chr5_2:21945997-21946016 None:intergenic 20.0%
!! AAGAAAGAAAGAAAAGTAAA+AGG - chr5_2:21946112-21946131 Msa0763170:five_prime_UTR 20.0%
!!! TGTTTTGTTTTTGTGGTTTT+GGG + chr5_2:21940896-21940915 None:intergenic 25.0%
!! AAACAAAACACTAGTTGTTT+TGG - chr5_2:21940906-21940925 Msa0763170:three_prime_UTR 25.0%
! AAACTCTTTATCATCATCAA+TGG - chr5_2:21941100-21941119 Msa0763170:intron 25.0%
! GATTATGATTATGAAGTTGA+GGG + chr5_2:21941424-21941443 None:intergenic 25.0%
! TGATTATGATTATGAAGTTG+AGG + chr5_2:21941425-21941444 None:intergenic 25.0%
! AATCATCTTCATATTCTTGA+TGG - chr5_2:21941452-21941471 Msa0763170:intron 25.0%
! TAGAATAAAAAGGAGGATTA+AGG + chr5_2:21941733-21941752 None:intergenic 25.0%
! ATTAAGCTAGAATAAAAAGG+AGG + chr5_2:21941740-21941759 None:intergenic 25.0%
! CAAGACAATTAGAAGAAAAA+AGG - chr5_2:21941799-21941818 Msa0763170:intron 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG + chr5_2:21941967-21941986 None:intergenic 25.0%
! AAAATCAGTTCTTGAACTAA+TGG - chr5_2:21941966-21941985 Msa0763170:intron 25.0%
! AAAGCAAAAAGCTGTTTATT+AGG + chr5_2:21942334-21942353 None:intergenic 25.0%
! AGTCAAAGGTTTAAACTTTA+AGG + chr5_2:21942683-21942702 None:intergenic 25.0%
! ACTTCTTTCTCAAATTCTTT+AGG - chr5_2:21942700-21942719 Msa0763170:intron 25.0%
! TGGTAAAGAAAGGAAAAAAA+AGG + chr5_2:21942867-21942886 None:intergenic 25.0%
!!! TTTTTTTCCTTTCTTTACCA+TGG - chr5_2:21942867-21942886 Msa0763170:intron 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG + chr5_2:21942951-21942970 None:intergenic 25.0%
!! CATTTTAAATCCAGATGTAT+CGG - chr5_2:21943158-21943177 Msa0763170:intron 25.0%
! ATCAAGTGTTAATCAAGATA+AGG - chr5_2:21943457-21943476 Msa0763170:intron 25.0%
! AATCAAGATAAGGAATGTTA+TGG - chr5_2:21943467-21943486 Msa0763170:CDS 25.0%
!! TCATTTAAAACAACATCGTT+AGG + chr5_2:21943772-21943791 None:intergenic 25.0%
! GGTTTCAAGATTTCTAATTA+TGG + chr5_2:21944352-21944371 None:intergenic 25.0%
!!! ATATAATATAGGAGCATTCA+TGG + chr5_2:21944400-21944419 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG - chr5_2:21944495-21944514 Msa0763170:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG - chr5_2:21944542-21944561 Msa0763170:intron 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG + chr5_2:21944682-21944701 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG + chr5_2:21944683-21944702 None:intergenic 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG - chr5_2:21944771-21944790 Msa0763170:intron 25.0%
! TGTAATTGGTAAATGTGAAA+AGG + chr5_2:21944923-21944942 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG - chr5_2:21944925-21944944 Msa0763170:intron 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG + chr5_2:21944937-21944956 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG - chr5_2:21944953-21944972 Msa0763170:CDS 25.0%
!! ATTGATAATTGAGTCAAATG+AGG + chr5_2:21945050-21945069 None:intergenic 25.0%
! TCATTTGACTCAATTATCAA+TGG - chr5_2:21945049-21945068 Msa0763170:intron 25.0%
! TATTTATATGAATGAGGGAA+AGG + chr5_2:21945259-21945278 None:intergenic 25.0%
! AGTATATAGTATTAGAGAAC+AGG + chr5_2:21945324-21945343 None:intergenic 25.0%
! AAATTACTGTGAGTATGAAA+GGG + chr5_2:21945347-21945366 None:intergenic 25.0%
! TAAATTACTGTGAGTATGAA+AGG + chr5_2:21945348-21945367 None:intergenic 25.0%
! TATGATTAAAGGGATAAAAG+AGG + chr5_2:21945375-21945394 None:intergenic 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG - chr5_2:21945838-21945857 Msa0763170:CDS 25.0%
! AATCCAAATTAGGTTTCTTT+GGG + chr5_2:21945937-21945956 None:intergenic 25.0%
! AAATCCAAATTAGGTTTCTT+TGG + chr5_2:21945938-21945957 None:intergenic 25.0%
! AAAGAAACCTAATTTGGATT+TGG - chr5_2:21945937-21945956 Msa0763170:CDS 25.0%
! ATGAGATTTAAGATTGAGAG+AGG + chr5_2:21940615-21940634 None:intergenic 30.0%
TATATATAGAGACAGTTGGA+AGG + chr5_2:21940768-21940787 None:intergenic 30.0%
!!! GTGTTTTGTTTTTGTGGTTT+TGG + chr5_2:21940897-21940916 None:intergenic 30.0%
!!! CAACTAGTGTTTTGTTTTTG+TGG + chr5_2:21940903-21940922 None:intergenic 30.0%
! CTAATTTGCAAAGACAAATC+TGG + chr5_2:21940978-21940997 None:intergenic 30.0%
!!! GTTGTTGTTGGTTTTGTATT+TGG + chr5_2:21941005-21941024 None:intergenic 30.0%
AACCAACAACAACAAGTAAT+TGG - chr5_2:21941012-21941031 Msa0763170:CDS 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG + chr5_2:21941017-21941036 None:intergenic 30.0%
! TTTGAATCTAAAGGCTTTGT+TGG + chr5_2:21941170-21941189 None:intergenic 30.0%
!! GTGTTGTTGTTTGAATCTAA+AGG + chr5_2:21941179-21941198 None:intergenic 30.0%
TAAACAGGAATTCCTCTAAT+AGG + chr5_2:21941377-21941396 None:intergenic 30.0%
!! TTGGTGTTAGAAATAGAAGA+AGG + chr5_2:21941491-21941510 None:intergenic 30.0%
TCAAAGCTTGAGATTGAAAA+GGG + chr5_2:21941529-21941548 None:intergenic 30.0%
ATCAAAGCTTGAGATTGAAA+AGG + chr5_2:21941530-21941549 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG - chr5_2:21941935-21941954 Msa0763170:intron 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG - chr5_2:21941936-21941955 Msa0763170:intron 30.0%
TTCTTTAGTCAGATTGAAGA+TGG - chr5_2:21942122-21942141 Msa0763170:intron 30.0%
TAGGCTACATTATACATTAG+AGG - chr5_2:21942182-21942201 Msa0763170:intron 30.0%
! ATCGATTTCTGAAAACAAGT+AGG - chr5_2:21942412-21942431 Msa0763170:intron 30.0%
GAATTTGAGAAAGAAGTCAA+AGG + chr5_2:21942697-21942716 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG + chr5_2:21942832-21942851 None:intergenic 30.0%
!! TACAGAAGCATTTATGGTTA+TGG + chr5_2:21942945-21942964 None:intergenic 30.0%
CAAGTAACAACTTTACTTAG+AGG - chr5_2:21943006-21943025 Msa0763170:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG - chr5_2:21943474-21943493 Msa0763170:CDS 30.0%
TATACTCTCTCAAAATCCAA+CGG + chr5_2:21943663-21943682 None:intergenic 30.0%
ATATAGTTGCAATATGGTGT+TGG + chr5_2:21943732-21943751 None:intergenic 30.0%
AACGAGATATAGTTGCAATA+TGG + chr5_2:21943738-21943757 None:intergenic 30.0%
! TATTACACCATCATGGATTT+TGG + chr5_2:21944098-21944117 None:intergenic 30.0%
! TTTACTTCCTTTTGAACAAC+TGG + chr5_2:21944138-21944157 None:intergenic 30.0%
ATAGAGATATCTCTTTCCTT+AGG - chr5_2:21944244-21944263 Msa0763170:intron 30.0%
CACTAAGTTTCTCATTTGTT+GGG + chr5_2:21944307-21944326 None:intergenic 30.0%
TTCTAATTATGGGACTACAA+GGG + chr5_2:21944341-21944360 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG + chr5_2:21944342-21944361 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG + chr5_2:21944373-21944392 None:intergenic 30.0%
! AAACCAAAGGTTGATTCTAT+TGG - chr5_2:21944626-21944645 Msa0763170:intron 30.0%
TTTCCAATAGAATCAACCTT+TGG + chr5_2:21944632-21944651 None:intergenic 30.0%
!! TAACCTTTGGAATATAAAGG+GGG + chr5_2:21944681-21944700 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG + chr5_2:21944684-21944703 None:intergenic 30.0%
AAAACAAAAGGCTTAACCTT+TGG + chr5_2:21944694-21944713 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG - chr5_2:21944739-21944758 Msa0763170:intron 30.0%
TATTGCCATGCACATTATTA+TGG - chr5_2:21944815-21944834 Msa0763170:intron 30.0%
TTGTCCTTCACAAATTCAAA+TGG - chr5_2:21944887-21944906 Msa0763170:intron 30.0%
CTAACCATTTGAATTTGTGA+AGG + chr5_2:21944894-21944913 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG + chr5_2:21945144-21945163 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG + chr5_2:21945437-21945456 None:intergenic 30.0%
AATCCTATATAAATGCTGTG+TGG - chr5_2:21945460-21945479 Msa0763170:CDS 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG - chr5_2:21945844-21945863 Msa0763170:CDS 30.0%
GTGAATTCCAAATCCAAATT+AGG + chr5_2:21945947-21945966 None:intergenic 30.0%
! TAAAAGTATGAAGTGATCCT+TGG - chr5_2:21946359-21946378 Msa0763170:five_prime_UTR 30.0%
! GATTTAAGATTGAGAGAGGA+AGG + chr5_2:21940611-21940630 None:intergenic 35.0%
!! CAAGCATTCAATCAAGTTGA+TGG + chr5_2:21940654-21940673 None:intergenic 35.0%
!!! TGGTTTTGGGTTTTGGATTT+TGG + chr5_2:21940883-21940902 None:intergenic 35.0%
!!! GTTTTTGTGGTTTTGGGTTT+TGG + chr5_2:21940890-21940909 None:intergenic 35.0%
!!! AACACTAGTTGTTTTGGAGA+AGG - chr5_2:21940912-21940931 Msa0763170:three_prime_UTR 35.0%
TGTGTGTAGATAGCAAAAGA+TGG - chr5_2:21940935-21940954 Msa0763170:three_prime_UTR 35.0%
!!! GTTGTTGGTTTTGTATTTGG+AGG + chr5_2:21941002-21941021 None:intergenic 35.0%
AACAAACACAGAAGAGGAAA+TGG - chr5_2:21941043-21941062 Msa0763170:CDS 35.0%
! ACAGAAGAGGAAATGGATTT+GGG - chr5_2:21941050-21941069 Msa0763170:CDS 35.0%
TTGTTGGATTTGAAAGAGAG+AGG + chr5_2:21941154-21941173 None:intergenic 35.0%
CATCATCACTTCCAAAATAG+TGG - chr5_2:21941218-21941237 Msa0763170:intron 35.0%
GTCTAAGAAAACCAAGTTCT+TGG + chr5_2:21941355-21941374 None:intergenic 35.0%
! GGTTTTCTTAGACCTATTAG+AGG - chr5_2:21941362-21941381 Msa0763170:intron 35.0%
TGAAGTTGAGGGAATGATAA+AGG + chr5_2:21941413-21941432 None:intergenic 35.0%
! TTCAATCTCAAGCTTTGATG+AGG - chr5_2:21941531-21941550 Msa0763170:intron 35.0%
GAAGATGAAGCATACTTTCA+TGG + chr5_2:21941667-21941686 None:intergenic 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG - chr5_2:21941934-21941953 Msa0763170:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG - chr5_2:21941975-21941994 Msa0763170:intron 35.0%
AAGATGGTACGATTCTGATT+GGG - chr5_2:21942138-21942157 Msa0763170:intron 35.0%
TAGAGGAAGCAATTAAGTGA+TGG - chr5_2:21942199-21942218 Msa0763170:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG - chr5_2:21942236-21942255 Msa0763170:intron 35.0%
TCCAATGGTTTCCTTAGAAA+GGG - chr5_2:21942237-21942256 Msa0763170:intron 35.0%
ATTGAGAGAAACCCTTTCTA+AGG + chr5_2:21942251-21942270 None:intergenic 35.0%
! AACTATGAGGTAGTTTGTCT+TGG + chr5_2:21942464-21942483 None:intergenic 35.0%
TCTAGCACAAATGGCTAAAA+TGG - chr5_2:21942586-21942605 Msa0763170:intron 35.0%
! CATTGAGTAATGATGGTGTT+TGG + chr5_2:21942825-21942844 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG - chr5_2:21943162-21943181 Msa0763170:intron 35.0%
GTGAAAACTACAGATAGAGT+AGG - chr5_2:21943184-21943203 Msa0763170:intron 35.0%
TCTCCCTTAAACCATGAAAT+AGG - chr5_2:21943323-21943342 Msa0763170:intron 35.0%
CTCCCTTAAACCATGAAATA+GGG - chr5_2:21943324-21943343 Msa0763170:intron 35.0%
TGCCCTATTTCATGGTTTAA+GGG + chr5_2:21943329-21943348 None:intergenic 35.0%
TTGCCCTATTTCATGGTTTA+AGG + chr5_2:21943330-21943349 None:intergenic 35.0%
CAATCTGATGTATACGACAA+TGG - chr5_2:21943347-21943366 Msa0763170:intron 35.0%
AAAACAACATCGTTAGGCTT+TGG + chr5_2:21943766-21943785 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG - chr5_2:21943818-21943837 Msa0763170:intron 35.0%
TTTATACTCACCTGACAAGT+GGG - chr5_2:21943819-21943838 Msa0763170:intron 35.0%
! CTACTACTTCTTTGAAGAGT+AGG + chr5_2:21944189-21944208 None:intergenic 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG - chr5_2:21944253-21944272 Msa0763170:intron 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG - chr5_2:21944254-21944273 Msa0763170:intron 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG - chr5_2:21944255-21944274 Msa0763170:intron 35.0%
! TTTTGTGGGGTTCAAACATT+AGG - chr5_2:21944268-21944287 Msa0763170:intron 35.0%
TCAAACATTAGGCTCTTGTA+TGG - chr5_2:21944279-21944298 Msa0763170:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG - chr5_2:21944280-21944299 Msa0763170:intron 35.0%
AAACATTAGGCTCTTGTATG+GGG - chr5_2:21944281-21944300 Msa0763170:intron 35.0%
GCACTAAGTTTCTCATTTGT+TGG + chr5_2:21944308-21944327 None:intergenic 35.0%
GCATTCATGGAAGTTTCAAA+GGG + chr5_2:21944387-21944406 None:intergenic 35.0%
AGCATTCATGGAAGTTTCAA+AGG + chr5_2:21944388-21944407 None:intergenic 35.0%
TGAGAAATGTTCTGTGTGTT+TGG - chr5_2:21944575-21944594 Msa0763170:intron 35.0%
TCTGTGTGTTTGGTTGTAAT+AGG - chr5_2:21944585-21944604 Msa0763170:intron 35.0%
CTGTGTGTTTGGTTGTAATA+GGG - chr5_2:21944586-21944605 Msa0763170:intron 35.0%
TTGGTTACATGGTAAACCAA+AGG - chr5_2:21944613-21944632 Msa0763170:intron 35.0%
ATTCCCCCTTTATATTCCAA+AGG - chr5_2:21944675-21944694 Msa0763170:intron 35.0%
! ATGTGTTTGGAATGCATGAA+AGG - chr5_2:21944752-21944771 Msa0763170:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG - chr5_2:21944753-21944772 Msa0763170:intron 35.0%
CATCTCCATAATAATGTGCA+TGG + chr5_2:21944823-21944842 None:intergenic 35.0%
AAATGAGGCAGGTTTAATAG+GGG + chr5_2:21945035-21945054 None:intergenic 35.0%
CAAATGAGGCAGGTTTAATA+GGG + chr5_2:21945036-21945055 None:intergenic 35.0%
TCAAATGAGGCAGGTTTAAT+AGG + chr5_2:21945037-21945056 None:intergenic 35.0%
ATAATTGAGTCAAATGAGGC+AGG + chr5_2:21945046-21945065 None:intergenic 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG + chr5_2:21945245-21945264 None:intergenic 35.0%
TAGTATTAGAGAACAGGTAG+AGG + chr5_2:21945318-21945337 None:intergenic 35.0%
ATTCCTATATAACCATCGCA+TGG + chr5_2:21945563-21945582 None:intergenic 35.0%
AATTCAACGTGTTGTCGAAT+AGG + chr5_2:21945639-21945658 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG - chr5_2:21945881-21945900 Msa0763170:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG - chr5_2:21945905-21945924 Msa0763170:CDS 35.0%
AAGCCCAAAGAAACCTAATT+TGG - chr5_2:21945931-21945950 Msa0763170:CDS 35.0%
AACTGAAAGAGTTAGAGCAA+TGG - chr5_2:21946046-21946065 Msa0763170:five_prime_UTR 35.0%
ACAGAAAGCAACAAAAGAAG+AGG - chr5_2:21946168-21946187 Msa0763170:five_prime_UTR 35.0%
CAGAAAGCAACAAAAGAAGA+GGG - chr5_2:21946169-21946188 Msa0763170:five_prime_UTR 35.0%
AGAAAGCAACAAAAGAAGAG+GGG - chr5_2:21946170-21946189 Msa0763170:five_prime_UTR 35.0%
CTAACACAATGAACTCTGAT+AGG + chr5_2:21946219-21946238 None:intergenic 35.0%
! GTGATCCTTGGTAATTGTAA+TGG - chr5_2:21946371-21946390 Msa0763170:five_prime_UTR 35.0%
GACAAGGTATGTGAAGTGAA+TGG + chr5_2:21940556-21940575 None:intergenic 40.0%
AGAGAGAGAGAGAAATGACA+AGG + chr5_2:21940572-21940591 None:intergenic 40.0%
!! GTGTGTTTTTGTGTGTGTGA+TGG + chr5_2:21940682-21940701 None:intergenic 40.0%
AAAGACAAATCTGGTTGTGC+TGG + chr5_2:21940969-21940988 None:intergenic 40.0%
GAGAACAACAAACACAGAAG+AGG - chr5_2:21941037-21941056 Msa0763170:CDS 40.0%
! CACAGAAGAGGAAATGGATT+TGG - chr5_2:21941049-21941068 Msa0763170:CDS 40.0%
! CAGAAGAGGAAATGGATTTG+GGG - chr5_2:21941051-21941070 Msa0763170:CDS 40.0%
!! AGGAAATGGATTTGGGGTTT+TGG - chr5_2:21941057-21941076 Msa0763170:CDS 40.0%
! GGAAGTGATGATGATGAATG+AGG + chr5_2:21941211-21941230 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG + chr5_2:21941303-21941322 None:intergenic 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG + chr5_2:21941343-21941362 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG - chr5_2:21941341-21941360 Msa0763170:intron 40.0%
AGTTGAGGGAATGATAAAGG+AGG + chr5_2:21941410-21941429 None:intergenic 40.0%
! CTCTCATGCTTCTTTTTGCT+GGG + chr5_2:21941577-21941596 None:intergenic 40.0%
ACATGTCAAGTCTCACTTAC+AGG - chr5_2:21942011-21942030 Msa0763170:intron 40.0%
GAAGATGGTACGATTCTGAT+TGG - chr5_2:21942137-21942156 Msa0763170:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG + chr5_2:21942241-21942260 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG + chr5_2:21942317-21942336 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG + chr5_2:21942318-21942337 None:intergenic 40.0%
TCTGAAAACAAGTAGGACAG+AGG - chr5_2:21942419-21942438 Msa0763170:intron 40.0%
GAATTGAGGTCTAGCACAAA+TGG - chr5_2:21942577-21942596 Msa0763170:intron 40.0%
AAAGCTGCCATGGTAAAGAA+AGG + chr5_2:21942877-21942896 None:intergenic 40.0%
! CTTTAACCATGGTTAGTCAC+AGG - chr5_2:21942893-21942912 Msa0763170:intron 40.0%
CATCAGATTGCCCTATTTCA+TGG + chr5_2:21943337-21943356 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG - chr5_2:21943356-21943375 Msa0763170:intron 40.0%
GATTTATCCAGTAAGCAGCA+AGG - chr5_2:21943431-21943450 Msa0763170:intron 40.0%
TACTGTACAGCTGTATTTGC+AGG - chr5_2:21943635-21943654 Msa0763170:intron 40.0%
CAAAAGAATTCCCACTTGTC+AGG + chr5_2:21943832-21943851 None:intergenic 40.0%
CTCAACTTCACATGCAAACA+TGG - chr5_2:21943992-21944011 Msa0763170:intron 40.0%
CTTCACATGCAAACATGGTT+AGG - chr5_2:21943997-21944016 Msa0763170:intron 40.0%
! TTTTGGATGCTCATGGTTTG+TGG + chr5_2:21944081-21944100 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG + chr5_2:21944088-21944107 None:intergenic 40.0%
TGAGCATCCAAAATCCATGA+TGG - chr5_2:21944088-21944107 Msa0763170:intron 40.0%
CTCTCTTCCAGTTGTTCAAA+AGG - chr5_2:21944128-21944147 Msa0763170:intron 40.0%
TTGAACCCCACAAAATCCTA+AGG + chr5_2:21944263-21944282 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG - chr5_2:21944594-21944613 Msa0763170:intron 40.0%
AATAGGGAAGCTTGGTTACA+TGG - chr5_2:21944602-21944621 Msa0763170:intron 40.0%
TGGAAACATGCAATCTCTTG+AGG - chr5_2:21944646-21944665 Msa0763170:intron 40.0%
AATGAGGCAGGTTTAATAGG+GGG + chr5_2:21945034-21945053 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG - chr5_2:21945202-21945221 Msa0763170:intron 40.0%
! GGGAAAGGAAATTTGAGATG+GGG + chr5_2:21945244-21945263 None:intergenic 40.0%
GAGGGAAAGGAAATTTGAGA+TGG + chr5_2:21945246-21945265 None:intergenic 40.0%
AGAACAGGTAGAGGAATCAA+AGG + chr5_2:21945309-21945328 None:intergenic 40.0%
GCTCCACACAGCATTTATAT+AGG + chr5_2:21945466-21945485 None:intergenic 40.0%
GAACCATGCGATGGTTATAT+AGG - chr5_2:21945557-21945576 Msa0763170:CDS 40.0%
CTCTCATAGCTTAGACACTT+TGG + chr5_2:21945872-21945891 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG - chr5_2:21945950-21945969 Msa0763170:CDS 40.0%
GAGCTAAAGAAAGAAACACG+AGG - chr5_2:21946134-21946153 Msa0763170:five_prime_UTR 40.0%
GAAAGCAACAAAAGAAGAGG+GGG - chr5_2:21946171-21946190 Msa0763170:five_prime_UTR 40.0%
CACAATGAACTCTGATAGGA+AGG + chr5_2:21946215-21946234 None:intergenic 40.0%
GTGCTCCATTACAATTACCA+AGG + chr5_2:21946379-21946398 None:intergenic 40.0%
CTAGGTTAGAGACTGCAAGA+TGG + chr5_2:21940741-21940760 None:intergenic 45.0%
! AGACAGTTGGAAGGTTAGCT+AGG + chr5_2:21940759-21940778 None:intergenic 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG - chr5_2:21941070-21941089 Msa0763170:CDS 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG + chr5_2:21941302-21941321 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG + chr5_2:21941304-21941323 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG + chr5_2:21941308-21941327 None:intergenic 45.0%
!! AAGCTTTGGTGGTGTTGTTG+TGG + chr5_2:21941329-21941348 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG + chr5_2:21941340-21941359 None:intergenic 45.0%
!! GGAGGAGGGTTTTGATAAAC+AGG + chr5_2:21941392-21941411 None:intergenic 45.0%
GAGGGAATGATAAAGGAGGA+GGG + chr5_2:21941406-21941425 None:intergenic 45.0%
TGAGGGAATGATAAAGGAGG+AGG + chr5_2:21941407-21941426 None:intergenic 45.0%
AGGGCTTGAACTTGTGTTGT+TGG + chr5_2:21941510-21941529 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG + chr5_2:21941578-21941597 None:intergenic 45.0%
! AAAGAAGCATGAGAGCTCCA+AGG - chr5_2:21941582-21941601 Msa0763170:intron 45.0%
GTTCATGCTGTTGAGCTCTT+AGG - chr5_2:21941638-21941657 Msa0763170:intron 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG + chr5_2:21942458-21942477 None:intergenic 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG + chr5_2:21942459-21942478 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG + chr5_2:21942477-21942496 None:intergenic 45.0%
! TACCATGGCAGCTTTAACCA+TGG - chr5_2:21942882-21942901 Msa0763170:intron 45.0%
AACCATGGTTAAAGCTGCCA+TGG + chr5_2:21942887-21942906 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG + chr5_2:21943171-21943190 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG - chr5_2:21943196-21943215 Msa0763170:intron 45.0%
! TGATCTTCCTTGCTGCTTAC+TGG + chr5_2:21943441-21943460 None:intergenic 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG - chr5_2:21943489-21943508 Msa0763170:CDS 45.0%
TGAGTGAGTGATCAAGAGAG+AGG + chr5_2:21943976-21943995 None:intergenic 45.0%
AATACACACGCCTGCATGAA+TGG - chr5_2:21945131-21945150 Msa0763170:intron 45.0%
CAAGTTCTATAGCACTTGGC+AGG - chr5_2:21945206-21945225 Msa0763170:intron 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG - chr5_2:21945214-21945233 Msa0763170:intron 45.0%
ATAAATGCTGTGTGGAGCAG+TGG - chr5_2:21945468-21945487 Msa0763170:CDS 45.0%
ATAACCATCGCATGGTTCAG+TGG + chr5_2:21945555-21945574 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG + chr5_2:21945922-21945941 None:intergenic 45.0%
!! ATCTCAAAGAGGTTGGCCTA+GGG + chr5_2:21945969-21945988 None:intergenic 45.0%
!! AATCTCAAAGAGGTTGGCCT+AGG + chr5_2:21945970-21945989 None:intergenic 45.0%
GGGTGAAATCTCAAAGAGGT+TGG + chr5_2:21945976-21945995 None:intergenic 45.0%
GCTAGGGTGAAATCTCAAAG+AGG + chr5_2:21945980-21945999 None:intergenic 45.0%
AGAGTTAGAGCAATGGAAGC+TGG - chr5_2:21946053-21946072 Msa0763170:five_prime_UTR 45.0%
CAACAAAAGAAGAGGGGGTA+GGG - chr5_2:21946176-21946195 Msa0763170:five_prime_UTR 45.0%
AAAGAGACGTGAGAGAGAGA+GGG - chr5_2:21946319-21946338 Msa0763170:five_prime_UTR 45.0%
!! AAATAAATAAGTAAATAAAA+AGG + chr5_2:21941848-21941867 None:intergenic 5.0%
!!! AATTATTATTATTTTTTCTA+TGG - chr5_2:21941913-21941932 Msa0763170:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG + chr5_2:21942496-21942515 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAATGAT+AGG - chr5_2:21942785-21942804 Msa0763170:intron 5.0%
!! AAAAAAATAGTATAAAAAAA+AGG + chr5_2:21943550-21943569 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG - chr5_2:21943581-21943600 Msa0763170:CDS 5.0%
!!! ATTTTATTACAAAAAAAAAA+TGG + chr5_2:21945789-21945808 None:intergenic 5.0%
GGTTAGAGACTGCAAGATGG+AGG + chr5_2:21940738-21940757 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG + chr5_2:21941301-21941320 None:intergenic 50.0%
!! GGTGGTGTTGTTGTGGTTGA+TGG + chr5_2:21941322-21941341 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG + chr5_2:21941602-21941621 None:intergenic 50.0%
CATGCTGTTGAGCTCTTAGG+TGG - chr5_2:21941641-21941660 Msa0763170:intron 50.0%
TGGAAGCCTGTGACTAACCA+TGG + chr5_2:21942902-21942921 None:intergenic 50.0%
GCTGTATTTGCAGGAACCGT+TGG - chr5_2:21943644-21943663 Msa0763170:intron 50.0%
GTTGCAAGTTGCAGGAACGT+TGG + chr5_2:21943708-21943727 None:intergenic 50.0%
GTGTTGGAGTTGCAAGTTGC+AGG + chr5_2:21943716-21943735 None:intergenic 50.0%
GGACTACAAGGGCTTAGCTT+TGG + chr5_2:21944330-21944349 None:intergenic 50.0%
GCAACAAAAGAAGAGGGGGT+AGG - chr5_2:21946175-21946194 Msa0763170:five_prime_UTR 50.0%
GAAAGAGACGTGAGAGAGAG+AGG - chr5_2:21946318-21946337 Msa0763170:five_prime_UTR 50.0%
AAGAGACGTGAGAGAGAGAG+GGG - chr5_2:21946320-21946339 Msa0763170:five_prime_UTR 50.0%
TGAGAGCTCCAAGGATGCGT+TGG - chr5_2:21941591-21941610 Msa0763170:intron 55.0%
GTTGCAGAAGAAGCAGGGAG+AGG + chr5_2:21942312-21942331 None:intergenic 55.0%
GGGGGTAGGGTGAAAAAGCA+TGG - chr5_2:21946189-21946208 Msa0763170:five_prime_UTR 55.0%
! AGAGAGAGGGGCGAGCTTTT+AGG - chr5_2:21946332-21946351 Msa0763170:five_prime_UTR 55.0%
CGAGCCACTGAACCATGCGA+TGG - chr5_2:21945548-21945567 Msa0763170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 21940539 21946434 21940539 ID=Msa0763170;Name=Msa0763170
chr5_2 mRNA 21940539 21946434 21940539 ID=Msa0763170-mRNA-1;Parent=Msa0763170;Name=Msa0763170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=415|1|1|1|1|1|6|449|398
chr5_2 exon 21940539 21941116 21940539 ID=Msa0763170-mRNA-1:exon:9101;Parent=Msa0763170-mRNA-1
chr5_2 exon 21942306 21942366 21942306 ID=Msa0763170-mRNA-1:exon:9100;Parent=Msa0763170-mRNA-1
chr5_2 exon 21943463 21943628 21943463 ID=Msa0763170-mRNA-1:exon:9099;Parent=Msa0763170-mRNA-1
chr5_2 exon 21943756 21943801 21943756 ID=Msa0763170-mRNA-1:exon:9098;Parent=Msa0763170-mRNA-1
chr5_2 exon 21944941 21945017 21944941 ID=Msa0763170-mRNA-1:exon:9097;Parent=Msa0763170-mRNA-1
chr5_2 exon 21945302 21946434 21945302 ID=Msa0763170-mRNA-1:exon:9096;Parent=Msa0763170-mRNA-1
chr5_2 five_prime_UTR 21946020 21946434 21946020 ID=Msa0763170-mRNA-1:five_prime_utr;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21945302 21946019 21945302 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21944941 21945017 21944941 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21943756 21943801 21943756 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21943463 21943628 21943463 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21942306 21942366 21942306 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 CDS 21940988 21941116 21940988 ID=Msa0763170-mRNA-1:cds;Parent=Msa0763170-mRNA-1
chr5_2 three_prime_UTR 21940539 21940987 21940539 ID=Msa0763170-mRNA-1:three_prime_utr;Parent=Msa0763170-mRNA-1
Gene Sequence

>Msa0763170

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACAAAACCAACAACAACAAGTAATTGGAAGAGAACAACAAACACAGAAGAGGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACGTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTTTCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTACTACTACTACACCTTCTTCTATTTCTAACACCAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCAGTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>Msa0763170

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTNTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPFQSFHQNHYFQHPQPLFQHHQPQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNLNHLHILDGTTTTPSSISNTNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSSKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL*