AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802860 MtrunA17_Chr5g0410741 97.264 402 7 3 1 398 1 402 0.0 788
Msa0802860 MtrunA17_Chr8g0366281 57.072 403 114 17 1 395 1 352 1.34e-122 358
Msa0802860 MtrunA17_Chr3g0109981 52.968 219 65 8 197 397 256 454 1.82e-51 179
Msa0802860 MtrunA17_Chr1g0154261 46.032 189 72 7 209 397 120 278 4.61e-37 136
Msa0802860 MtrunA17_Chr6g0479431 76.744 86 18 1 197 280 182 267 1.78e-36 136
Msa0802860 MtrunA17_Chr7g0243081 45.763 118 45 3 174 289 45 145 6.82e-23 98.6
Msa0802860 MtrunA17_Chr1g0210911 48.113 106 47 4 214 313 21 124 4.51e-21 93.2
Msa0802860 MtrunA17_Chr1g0162931 65.517 58 20 0 214 271 17 74 6.34e-21 92.0
Msa0802860 MtrunA17_Chr2g0320231 68.966 58 18 0 214 271 96 153 1.20e-19 89.7
Msa0802860 MtrunA17_Chr8g0379121 64.062 64 22 1 214 277 110 172 2.51e-19 89.4
Msa0802860 MtrunA17_Chr7g0261911 61.905 63 24 0 209 271 256 318 1.05e-17 84.7
Msa0802860 MtrunA17_Chr1g0190301 63.333 60 22 0 212 271 172 231 3.61e-17 82.4
Msa0802860 MtrunA17_Chr2g0288601 64.407 59 20 1 208 266 65 122 4.64e-17 77.0
Msa0802860 MtrunA17_Chr3g0095611 58.929 56 23 0 216 271 20 75 7.66e-17 79.0
Msa0802860 MtrunA17_Chr5g0409731 69.811 53 16 0 216 268 26 78 8.12e-17 80.5
Msa0802860 MtrunA17_Chr7g0274471 64.286 56 20 0 216 271 219 274 1.57e-16 80.9
Msa0802860 MtrunA17_Chr2g0283951 55.405 74 28 2 214 283 88 160 2.67e-16 79.7
Msa0802860 MtrunA17_Chr7g0258551 60.000 55 22 0 217 271 214 268 4.25e-16 79.3
Msa0802860 MtrunA17_Chr5g0417521 44.872 78 43 0 216 293 16 93 1.29e-15 77.4
Msa0802860 MtrunA17_Chr7g0254981 61.818 55 21 0 217 271 52 106 1.48e-15 76.3
Msa0802860 MtrunA17_Chr1g0175091 60.000 55 22 0 217 271 260 314 1.98e-15 77.4
Msa0802860 MtrunA17_Chr2g0291021 50.649 77 36 1 217 293 51 125 2.06e-15 76.6
Msa0802860 MtrunA17_Chr1g0197171 58.333 60 25 0 216 275 45 104 3.45e-15 75.5
Msa0802860 MtrunA17_Chr2g0321461 58.929 56 23 0 216 271 46 101 3.80e-15 76.6
Msa0802860 MtrunA17_Chr8g0356501 58.929 56 23 0 216 271 38 93 4.23e-15 75.9
Msa0802860 MtrunA17_Chr2g0310011 58.929 56 23 0 216 271 36 91 5.06e-15 75.9
Msa0802860 MtrunA17_Chr2g0290991 50.000 74 34 1 216 286 40 113 7.12e-15 75.1
Msa0802860 MtrunA17_Chr6g0461641 56.140 57 25 0 216 272 43 99 1.65e-14 74.7
Msa0802860 MtrunA17_Chr4g0042451 54.386 57 26 0 216 272 18 74 7.10e-14 72.4
Msa0802860 MtrunA17_Chr1g0175081 50.909 55 27 0 217 271 24 78 4.34e-12 62.4
Msa0802860 MtrunA17_Chr7g0242521 46.341 82 37 2 217 291 15 96 5.11e-12 65.5
Msa0802860 MtrunA17_Chr1g0175071 52.830 53 25 0 217 269 179 231 6.09e-12 66.2
Msa0802860 MtrunA17_Chr7g0258531 39.535 86 49 1 217 302 215 297 1.03e-11 65.9
Msa0802860 MtrunA17_Chr2g0304841 43.210 81 39 2 212 286 210 289 2.10e-11 65.9
Msa0802860 MtrunA17_Chr4g0045361 51.282 78 34 2 214 289 273 348 2.50e-11 65.1
Msa0802860 MtrunA17_Chr4g0062921 54.545 55 25 0 214 268 234 288 4.73e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802860 AT1G32240.1 54.087 416 141 15 1 396 1 386 3.74e-100 303
Msa0802860 AT1G32240.2 53.514 370 126 12 1 352 1 342 2.09e-91 280
Msa0802860 AT4G17695.1 39.225 413 140 14 1 397 1 318 6.96e-62 202
Msa0802860 AT5G16560.1 38.770 374 152 14 76 397 50 398 3.82e-49 171
Msa0802860 AT1G32240.3 61.589 151 42 7 250 396 1 139 7.38e-39 136
Msa0802860 AT5G42630.2 80.000 75 15 0 210 284 100 174 1.77e-35 130
Msa0802860 AT5G42630.1 59.016 122 43 2 210 327 100 218 4.98e-35 130
Msa0802860 AT2G38300.1 55.000 80 35 1 208 287 48 126 4.74e-21 93.6
Msa0802860 AT2G02060.2 72.222 54 15 0 215 268 29 82 4.94e-20 89.4
Msa0802860 AT2G02060.1 72.222 54 15 0 215 268 29 82 4.94e-20 89.4
Msa0802860 AT1G14600.1 66.102 59 20 0 215 273 23 81 1.03e-19 88.2
Msa0802860 AT4G04605.1 65.517 58 20 0 214 271 13 70 1.29e-19 87.4
Msa0802860 AT5G45580.1 46.087 115 53 3 216 322 8 121 1.85e-19 87.8
Msa0802860 AT5G45580.2 46.087 115 53 3 216 322 24 137 3.22e-19 87.4
Msa0802860 AT2G40260.1 62.687 67 24 1 208 274 76 141 1.56e-18 87.0
Msa0802860 AT4G04580.1 59.322 59 24 0 216 274 15 73 4.65e-18 81.3
Msa0802860 AT2G42660.1 66.071 56 19 0 216 271 51 106 7.74e-18 83.2
Msa0802860 AT4G04555.1 51.316 76 34 2 199 274 1 73 4.87e-17 76.6
Msa0802860 AT4G28610.1 65.455 55 19 0 217 271 227 281 3.48e-16 80.1
Msa0802860 AT3G12730.1 62.500 56 21 0 216 271 24 79 4.74e-16 77.4
Msa0802860 AT5G29000.4 52.778 72 34 0 217 288 233 304 1.23e-15 77.4
Msa0802860 AT2G01060.1 63.636 55 20 0 217 271 17 71 1.56e-15 77.0
Msa0802860 AT3G04450.3 56.250 64 28 0 208 271 231 294 1.77e-15 77.0
Msa0802860 AT3G04450.4 54.286 70 31 1 203 271 185 254 2.77e-15 77.4
Msa0802860 AT3G04450.2 54.286 70 31 1 203 271 185 254 2.77e-15 77.4
Msa0802860 AT3G24120.1 62.264 53 20 0 216 268 42 94 3.06e-15 76.3
Msa0802860 AT3G04450.1 54.286 70 31 1 203 271 225 294 3.09e-15 77.4
Msa0802860 AT3G24120.2 62.264 53 20 0 216 268 42 94 3.10e-15 76.3
Msa0802860 AT5G29000.1 54.545 66 30 0 217 282 190 255 3.59e-15 76.6
Msa0802860 AT5G29000.3 54.545 66 30 0 217 282 190 255 3.59e-15 76.6
Msa0802860 AT5G29000.2 54.545 66 30 0 217 282 233 298 4.83e-15 76.6
Msa0802860 AT1G79430.2 58.929 56 23 0 216 271 35 90 5.05e-15 76.3
Msa0802860 AT4G13640.1 60.377 53 21 0 216 268 38 90 1.07e-14 74.7
Msa0802860 AT4G13640.2 60.377 53 21 0 216 268 38 90 1.11e-14 74.7
Msa0802860 AT5G06800.3 50.794 63 31 0 209 271 186 248 2.54e-14 73.2
Msa0802860 AT5G18240.2 55.357 56 25 0 216 271 46 101 4.53e-14 73.6
Msa0802860 AT5G18240.3 55.357 56 25 0 216 271 46 101 4.53e-14 73.6
Msa0802860 AT3G04030.1 53.571 56 26 0 216 271 46 101 4.91e-14 73.6
Msa0802860 AT3G13040.3 46.154 104 50 3 172 271 196 297 4.97e-14 73.9
Msa0802860 AT3G13040.1 46.154 104 50 3 172 271 196 297 4.97e-14 73.9
Msa0802860 AT3G13040.2 46.154 104 50 3 172 271 196 297 4.97e-14 73.9
Msa0802860 AT5G18240.1 55.357 56 25 0 216 271 46 101 5.20e-14 73.6
Msa0802860 AT5G18240.4 55.357 56 25 0 216 271 46 101 5.20e-14 73.6
Msa0802860 AT5G18240.5 55.357 56 25 0 216 271 46 101 5.24e-14 73.6
Msa0802860 AT3G04030.3 53.571 56 26 0 216 271 46 101 5.74e-14 73.2
Msa0802860 AT2G20400.1 63.636 55 20 0 217 271 233 287 6.38e-14 73.2
Msa0802860 AT2G20400.2 63.636 55 20 0 217 271 233 287 6.65e-14 73.2
Msa0802860 AT5G06800.1 56.364 55 24 0 217 271 194 248 9.35e-14 72.4
Msa0802860 AT5G06800.2 56.364 55 24 0 217 271 194 248 9.69e-14 72.4
Msa0802860 AT2G06020.1 55.738 61 27 0 217 277 88 148 1.73e-13 71.2
Msa0802860 AT1G69580.2 50.877 57 28 0 216 272 35 91 9.99e-13 69.3
Msa0802860 AT1G69580.1 50.877 57 28 0 216 272 35 91 1.01e-12 69.3
Msa0802860 AT3G04030.2 51.786 56 26 1 216 271 46 100 1.49e-11 65.9
Msa0802860 AT2G03500.1 53.448 58 27 0 211 268 229 286 3.48e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTATTTCCACTATTT+TGG 0.109662 5_3:-17660745 None:intergenic
TGATCTTCCTTGCTGCTTAA+TGG 0.145751 5_3:-17662992 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5_3:-17661482 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5_3:-17665488 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5_3:-17665497 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5_3:+17665484 Msa0802860:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5_3:+17663028 Msa0802860:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5_3:+17664181 Msa0802860:CDS
GGTGGTGTTGTTGTGGTTGA+TGG 0.254980 5_3:-17660835 None:intergenic
AGGAAATGGATTTGGGGTTT+TGG 0.258801 5_3:+17660573 Msa0802860:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5_3:+17660528 Msa0802860:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5_3:+17665490 Msa0802860:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5_3:-17660530 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5_3:+17661154 Msa0802860:CDS
CAAGCATTCAATCAAGTTGA+TGG 0.292669 5_3:-17660169 None:intergenic
AAACAAAACACTAGTTGTTT+TGG 0.293069 5_3:+17660424 Msa0802860:five_prime_UTR
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5_3:-17660868 None:intergenic
CACAGAAGAGGAAATGGATT+TGG 0.299354 5_3:+17660565 Msa0802860:CDS
ACAGAAGAGGAAATGGATTT+GGG 0.314344 5_3:+17660566 Msa0802860:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5_3:+17661484 Msa0802860:CDS
AATCATCTTCATATTCTTGA+TGG 0.327427 5_3:+17660968 Msa0802860:CDS
GAAGATGAAGCATACTTTCA+TGG 0.330340 5_3:-17661180 None:intergenic
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5_3:+17661529 Msa0802860:CDS
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5_3:-17665487 None:intergenic
TTTGAATCTAAAGGCTTTGT+TGG 0.343931 5_3:-17660683 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5_3:-17665472 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5_3:-17660856 None:intergenic
CTAATTTGCAAAGACAAATC+TGG 0.371942 5_3:-17660491 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5_3:-17665422 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5_3:-17660816 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5_3:-17660890 None:intergenic
TGAAGTTGAGGGAATGATAA+AGG 0.400321 5_3:-17660926 None:intergenic
CATCATCACTTCCAAAATAG+TGG 0.402204 5_3:+17660734 Msa0802860:CDS
AACAAACACAGAAGAGGAAA+TGG 0.404086 5_3:+17660559 Msa0802860:CDS
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5_3:+17663043 Msa0802860:CDS
AGTTCATCTACAAACCTATC+AGG 0.408228 5_3:+17665458 Msa0802860:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5_3:-17660853 None:intergenic
CTAACACAATGAACTCTGAT+AGG 0.418494 5_3:-17665767 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5_3:-17664184 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5_3:+17662910 Msa0802860:CDS
TTTGATGAAAAGATTGATAA+GGG 0.432631 5_3:-17660775 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5_3:+17664157 Msa0802860:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5_3:-17661043 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5_3:+17660616 Msa0802860:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5_3:+17663021 Msa0802860:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5_3:-17660817 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5_3:-17661042 None:intergenic
AGGTGTAATTAATAATTGAT+TGG 0.458486 5_3:-17660233 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5_3:-17660815 None:intergenic
GATTTAAGATTGAGAGAGGA+AGG 0.463601 5_3:-17660126 None:intergenic
TTGTTGTTAGAAATAGTAGA+AGG 0.465912 5_3:-17661004 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5_3:+17660857 Msa0802860:CDS
TGAGGGAATGATAAAGGAGG+AGG 0.480787 5_3:-17660920 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5_3:-17660937 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.484429 5_3:-17661115 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5_3:+17664149 Msa0802860:intron
CACAATGAACTCTGATAGGA+AGG 0.487220 5_3:-17665763 None:intergenic
AGACAGTTGGAAGGTTAGCT+AGG 0.490441 5_3:-17660274 None:intergenic
GAAAGAGACGTGAGAGAGAG+AGG 0.492090 5_3:+17665869 Msa0802860:three_prime_UTR
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5_3:-17665520 None:intergenic
AATTTATATATAGAGACAGT+TGG 0.498827 5_3:-17660287 None:intergenic
ATGAGATTTAAGATTGAGAG+AGG 0.506309 5_3:-17660130 None:intergenic
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5_3:+17662750 Msa0802860:CDS
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5_3:+17663011 Msa0802860:CDS
GTGATCCTTGGTAATTGTAA+TGG 0.517963 5_3:+17665922 Msa0802860:three_prime_UTR
TGATTATGATTATGAAGTTG+AGG 0.522631 5_3:-17660938 None:intergenic
TTAAAGTATGAAGTGATCCT+TGG 0.525381 5_3:+17665910 Msa0802860:three_prime_UTR
AAGCTTTGGTGGTGTTGTTG+TGG 0.526343 5_3:-17660842 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5_3:+17665503 Msa0802860:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5_3:-17660821 None:intergenic
AAAGAGACGTGAGAGAGAGA+GGG 0.539683 5_3:+17665870 Msa0802860:three_prime_UTR
AGAGTTAGAGCAATGGAAGC+TGG 0.543410 5_3:+17665606 Msa0802860:three_prime_UTR
CAGAAAGCAACAAAAGAAGA+GGG 0.543613 5_3:+17665719 Msa0802860:three_prime_UTR
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5_3:+17661047 Msa0802860:CDS
ACAGAAAGCAACAAAAGAAG+AGG 0.548854 5_3:+17665718 Msa0802860:three_prime_UTR
GAGGGAATGATAAAGGAGGA+GGG 0.550824 5_3:-17660919 None:intergenic
TGAGAGCTCCAAGGATGCGT+TGG 0.554044 5_3:+17661107 Msa0802860:CDS
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5_3:+17661157 Msa0802860:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5_3:-17660482 None:intergenic
TGGAAACATGCAATCTCTTG+AGG 0.562071 5_3:+17664201 Msa0802860:CDS
GAGAACAACAAACACAGAAG+AGG 0.568948 5_3:+17660553 Msa0802860:CDS
AGAAAGCAACAAAAGAAGAG+GGG 0.575495 5_3:+17665720 Msa0802860:three_prime_UTR
GGAAGTGATGATGATGAATG+AGG 0.577883 5_3:-17660724 None:intergenic
TCTTGAACTAATGGATGTGA+AGG 0.578980 5_3:+17661493 Msa0802860:CDS
GTGTTGTTGTTTGAATCTAA+AGG 0.580441 5_3:-17660692 None:intergenic
TTGTTGGATTTGAAAGAGAG+AGG 0.584330 5_3:-17660667 None:intergenic
TATATATAGAGACAGTTGGA+AGG 0.586597 5_3:-17660283 None:intergenic
CAGAAGAGGAAATGGATTTG+GGG 0.591791 5_3:+17660567 Msa0802860:CDS
CTAGGTTAGAGACTGCAAGA+TGG 0.596830 5_3:-17660256 None:intergenic
GGTGTGTAGATAGCAAAAGA+TGG 0.596942 5_3:+17660451 Msa0802860:exon
GAAAGCAACAAAAGAAGAGG+GGG 0.597115 5_3:+17665721 Msa0802860:three_prime_UTR
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5_3:-17665519 None:intergenic
AAGAGACGTGAGAGAGAGAG+GGG 0.600034 5_3:+17665871 Msa0802860:three_prime_UTR
TTGGTTACATGGTAAACCAA+AGG 0.600087 5_3:+17664168 Msa0802860:CDS
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5_3:-17665526 None:intergenic
AACTGAAAGAGTTAGAGCAA+TGG 0.615451 5_3:+17665599 Msa0802860:three_prime_UTR
AGTTGAGGGAATGATAAAGG+AGG 0.618652 5_3:-17660923 None:intergenic
CAATCTGATGTATACGACAA+TGG 0.619241 5_3:+17662901 Msa0802860:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5_3:+17662738 Msa0802860:CDS
TTAAATCCAGATGTATCGGA+CGG 0.625352 5_3:+17662716 Msa0802860:intron
GGTTAGAGACTGCAAGATGG+AGG 0.645066 5_3:-17660253 None:intergenic
GACAAGGTATGTGAAGTGAA+TGG 0.646943 5_3:-17660031 None:intergenic
AAAGAAGCATGAGAGCTCCA+AGG 0.647856 5_3:+17661098 Msa0802860:CDS
GATTTATCCATTAAGCAGCA+AGG 0.648761 5_3:+17662985 Msa0802860:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5_3:+17665434 Msa0802860:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5_3:-17660814 None:intergenic
ACAATGAACTCTGATAGGAA+GGG 0.662859 5_3:-17665762 None:intergenic
GTGCTCCATTACAATTACCA+AGG 0.676755 5_3:-17665927 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5_3:-17665530 None:intergenic
AAAGCAACAAAAGAAGAGGG+GGG 0.688138 5_3:+17665722 Msa0802860:three_prime_UTR
GAGCTAAAGAAAGAAACACA+AGG 0.705800 5_3:+17665684 Msa0802860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTTTTTTAT+CGG - chr5_3:17662194-17662213 None:intergenic 0.0%
!!! CTTAAAAATATATTTCTTTT+TGG + chr5_3:17661215-17661234 Msa0802860:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG + chr5_3:17662632-17662651 Msa0802860:intron 10.0%
!! ATATAAATTATCATATAGTA+TGG - chr5_3:17664636-17664655 None:intergenic 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG + chr5_3:17665276-17665295 Msa0802860:intron 10.0%
!!! AAAAATATAATATGTTGATT+TGG - chr5_3:17665795-17665814 None:intergenic 10.0%
!!! GAAATATATTTTTAAGAAAG+TGG - chr5_3:17661211-17661230 None:intergenic 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG - chr5_3:17661283-17661302 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG - chr5_3:17661284-17661303 None:intergenic 15.0%
!! TTTATATACTTATACATTAG+AGG + chr5_3:17661718-17661737 Msa0802860:intron 15.0%
!! ATATTAATTTCAAATTCCAA+TGG + chr5_3:17661758-17661777 Msa0802860:intron 15.0%
!!! GATTTTATATTCTTTTAAGT+TGG - chr5_3:17661907-17661926 None:intergenic 15.0%
!!! TCAATTCGAATATATTTTTT+TGG - chr5_3:17662100-17662119 None:intergenic 15.0%
!! AAAAAAATATATTCGAATTG+AGG + chr5_3:17662099-17662118 Msa0802860:intron 15.0%
!! TTCTATCATATATTAATTGT+TGG + chr5_3:17662789-17662808 Msa0802860:intron 15.0%
!! TAGTATAAAAAAAGGATTAT+AGG - chr5_3:17663096-17663115 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG - chr5_3:17663779-17663798 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG - chr5_3:17663964-17663983 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG + chr5_3:17663969-17663988 Msa0802860:intron 15.0%
!!! AATAACTTTTTCAAAACAAA+AGG - chr5_3:17664261-17664280 None:intergenic 15.0%
!! AGAAAAAAGAAAGAAAAAAA+AGG + chr5_3:17664402-17664421 Msa0802860:intron 15.0%
!!! TTATATAGTCATTTTCAATA+TGG - chr5_3:17664561-17664580 None:intergenic 15.0%
!!! GTTTTATATACACAAATAAT+TGG + chr5_3:17664715-17664734 Msa0802860:intron 15.0%
!! AAGAATATTTATATGAATGA+GGG - chr5_3:17664817-17664836 None:intergenic 15.0%
!! AAAGAATATTTATATGAATG+AGG - chr5_3:17664818-17664837 None:intergenic 15.0%
!! TACAAAAAAAAAATGGAAAA+GGG - chr5_3:17665335-17665354 None:intergenic 15.0%
!! TTACAAAAAAAAAATGGAAA+AGG - chr5_3:17665336-17665355 None:intergenic 15.0%
!! AAAAAAGAAAGAAAAGTAAA+AGG + chr5_3:17665662-17665681 Msa0802860:three_prime_UTR 15.0%
!!! CAACATATTATATTTTTCTT+TGG + chr5_3:17665798-17665817 Msa0802860:three_prime_UTR 15.0%
!! AGGTGTAATTAATAATTGAT+TGG - chr5_3:17660236-17660255 None:intergenic 20.0%
!! AATTTATATATAGAGACAGT+TGG - chr5_3:17660290-17660309 None:intergenic 20.0%
!!! CATTATTATTTCCACTATTT+TGG - chr5_3:17660748-17660767 None:intergenic 20.0%
!! TTTGATGAAAAGATTGATAA+GGG - chr5_3:17660778-17660797 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGATA+AGG - chr5_3:17660779-17660798 None:intergenic 20.0%
!! GTAATTAAGCTAGAATAAAA+AGG - chr5_3:17661259-17661278 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG + chr5_3:17661316-17661335 Msa0802860:intron 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG - chr5_3:17661559-17661578 None:intergenic 20.0%
!! AAAGTAAAAAGCTGTTTATT+AGG - chr5_3:17661870-17661889 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG - chr5_3:17661903-17661922 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG - chr5_3:17662027-17662046 None:intergenic 20.0%
!!! GAATATATTTTTTTGGTACT+TGG - chr5_3:17662093-17662112 None:intergenic 20.0%
!! ACAAAACAAAACAAAATGAT+AGG + chr5_3:17662336-17662355 Msa0802860:intron 20.0%
!!! TTTTATAATATGCATATGCA+TGG - chr5_3:17662473-17662492 None:intergenic 20.0%
!!! AATTTTAAATCCAGATGTAT+CGG + chr5_3:17662712-17662731 Msa0802860:intron 20.0%
!! ATATTATTATTACACCATCA+TGG - chr5_3:17663658-17663677 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG - chr5_3:17663790-17663809 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG - chr5_3:17663904-17663923 None:intergenic 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG - chr5_3:17664034-17664053 None:intergenic 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG + chr5_3:17664032-17664051 Msa0802860:intron 20.0%
!! AAAAAGAAAAGCAAAACTTA+AGG - chr5_3:17664093-17664112 None:intergenic 20.0%
!! AATTAATAACTCTTAACTAG+AGG - chr5_3:17664536-17664555 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG - chr5_3:17664938-17664957 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG - chr5_3:17664939-17664958 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+CGG - chr5_3:17665157-17665176 None:intergenic 20.0%
!!! ATATATTTTTTCAGAAGCTA+GGG - chr5_3:17665549-17665568 None:intergenic 20.0%
!!! AATATATTTTTTCAGAAGCT+AGG - chr5_3:17665550-17665569 None:intergenic 20.0%
!!! TAGAATTCTTTTTCTAAGGA+GGG - chr5_3:17660317-17660336 None:intergenic 25.0%
!! ACAGTAGAATTCTTTTTCTA+AGG - chr5_3:17660321-17660340 None:intergenic 25.0%
!!! TGTTTTGTTTTTGTGGTTTT+GGG - chr5_3:17660414-17660433 None:intergenic 25.0%
!! AAACAAAACACTAGTTGTTT+TGG + chr5_3:17660424-17660443 Msa0802860:five_prime_UTR 25.0%
! AAACTCTTTATCATCATCAA+TGG + chr5_3:17660616-17660635 Msa0802860:CDS 25.0%
! GATTATGATTATGAAGTTGA+GGG - chr5_3:17660940-17660959 None:intergenic 25.0%
! TGATTATGATTATGAAGTTG+AGG - chr5_3:17660941-17660960 None:intergenic 25.0%
! AATCATCTTCATATTCTTGA+TGG + chr5_3:17660968-17660987 Msa0802860:CDS 25.0%
!! TTGTTGTTAGAAATAGTAGA+AGG - chr5_3:17661007-17661026 None:intergenic 25.0%
! TAGAATAAAAAGGAGGATTA+AGG - chr5_3:17661249-17661268 None:intergenic 25.0%
! ATTAAGCTAGAATAAAAAGG+AGG - chr5_3:17661256-17661275 None:intergenic 25.0%
! CAAGACAATTAGAAGAAAAA+AGG + chr5_3:17661315-17661334 Msa0802860:intron 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG - chr5_3:17661485-17661504 None:intergenic 25.0%
! AAAATCAGTTCTTGAACTAA+TGG + chr5_3:17661484-17661503 Msa0802860:CDS 25.0%
! AGTCAAAGGTTTAAACTTTA+AGG - chr5_3:17662219-17662238 None:intergenic 25.0%
! ACTTCTTTCTCAAATTCTTT+AGG + chr5_3:17662236-17662255 Msa0802860:intron 25.0%
! TGGTAAAGAAAGGAAAAAAA+AGG - chr5_3:17662418-17662437 None:intergenic 25.0%
!!! TTTTTTTCCTTTCTTTACCA+TGG + chr5_3:17662418-17662437 Msa0802860:intron 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG - chr5_3:17662502-17662521 None:intergenic 25.0%
! ATCAAGTGTTAATCAAGATA+AGG + chr5_3:17663011-17663030 Msa0802860:CDS 25.0%
! AATCAAGATAAGGAATGTTA+TGG + chr5_3:17663021-17663040 Msa0802860:CDS 25.0%
!! TCATTTAAAACAACATCGTT+AGG - chr5_3:17663325-17663344 None:intergenic 25.0%
! GGTTTCAAGATTTCTAATTA+TGG - chr5_3:17663905-17663924 None:intergenic 25.0%
!!! ATATAATATAGGAGCATTCA+TGG - chr5_3:17663953-17663972 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG + chr5_3:17664048-17664067 Msa0802860:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG + chr5_3:17664095-17664114 Msa0802860:intron 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG - chr5_3:17664237-17664256 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG - chr5_3:17664238-17664257 None:intergenic 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG + chr5_3:17664326-17664345 Msa0802860:intron 25.0%
! TGTAATTGGTAAATGTGAAA+AGG - chr5_3:17664478-17664497 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG + chr5_3:17664480-17664499 Msa0802860:intron 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG - chr5_3:17664492-17664511 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG + chr5_3:17664508-17664527 Msa0802860:intron 25.0%
!! ATTGATAATTGAGTCAAATG+AGG - chr5_3:17664605-17664624 None:intergenic 25.0%
! TCATTTGACTCAATTATCAA+TGG + chr5_3:17664604-17664623 Msa0802860:intron 25.0%
! TATTTATATGAATGAGGGAA+AGG - chr5_3:17664812-17664831 None:intergenic 25.0%
! AGTATATAGTATTAGAGAAC+AGG - chr5_3:17664877-17664896 None:intergenic 25.0%
! AAATTACTGTGAGTATGAAA+GGG - chr5_3:17664900-17664919 None:intergenic 25.0%
! TAAATTACTGTGAGTATGAA+AGG - chr5_3:17664901-17664920 None:intergenic 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG + chr5_3:17665391-17665410 Msa0802860:intron 25.0%
! AATCCAAATTAGGTTTCTTT+GGG - chr5_3:17665490-17665509 None:intergenic 25.0%
! AAATCCAAATTAGGTTTCTT+TGG - chr5_3:17665491-17665510 None:intergenic 25.0%
! AAAGAAACCTAATTTGGATT+TGG + chr5_3:17665490-17665509 Msa0802860:CDS 25.0%
! ATGAGATTTAAGATTGAGAG+AGG - chr5_3:17660133-17660152 None:intergenic 30.0%
TATATATAGAGACAGTTGGA+AGG - chr5_3:17660286-17660305 None:intergenic 30.0%
!! AGAATTCTTTTTCTAAGGAG+GGG - chr5_3:17660316-17660335 None:intergenic 30.0%
!! GTAGAATTCTTTTTCTAAGG+AGG - chr5_3:17660318-17660337 None:intergenic 30.0%
!!! GTGTTTTGTTTTTGTGGTTT+TGG - chr5_3:17660415-17660434 None:intergenic 30.0%
!!! CAACTAGTGTTTTGTTTTTG+TGG - chr5_3:17660421-17660440 None:intergenic 30.0%
! CTAATTTGCAAAGACAAATC+TGG - chr5_3:17660494-17660513 None:intergenic 30.0%
!!! GTTGTTGTTGGTTTTGTATT+TGG - chr5_3:17660521-17660540 None:intergenic 30.0%
AACCAACAACAACAAGTAAT+TGG + chr5_3:17660528-17660547 Msa0802860:CDS 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG - chr5_3:17660533-17660552 None:intergenic 30.0%
! TTTGAATCTAAAGGCTTTGT+TGG - chr5_3:17660686-17660705 None:intergenic 30.0%
!! GTGTTGTTGTTTGAATCTAA+AGG - chr5_3:17660695-17660714 None:intergenic 30.0%
TAAACAGGAATTCCTCTAAT+AGG - chr5_3:17660893-17660912 None:intergenic 30.0%
TCAAAGCTTGAGATTGAAAA+GGG - chr5_3:17661045-17661064 None:intergenic 30.0%
ATCAAAGCTTGAGATTGAAA+AGG - chr5_3:17661046-17661065 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG + chr5_3:17661453-17661472 Msa0802860:intron 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG + chr5_3:17661454-17661473 Msa0802860:intron 30.0%
TTCTTTAGTCAGATTGAAGA+TGG + chr5_3:17661640-17661659 Msa0802860:intron 30.0%
! ATCGATTTCTGAAAACAAGT+AGG + chr5_3:17661948-17661967 Msa0802860:intron 30.0%
GAATTTGAGAAAGAAGTCAA+AGG - chr5_3:17662233-17662252 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG - chr5_3:17662383-17662402 None:intergenic 30.0%
!! TACAGAAGCATTTATGGTTA+TGG - chr5_3:17662496-17662515 None:intergenic 30.0%
CAAGTAACAACTTTACTTAG+AGG + chr5_3:17662557-17662576 Msa0802860:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG + chr5_3:17663028-17663047 Msa0802860:CDS 30.0%
TATACTCTCTCAAAATCCAA+CGG - chr5_3:17663216-17663235 None:intergenic 30.0%
AACGAGATATAGTTGCAATA+TGG - chr5_3:17663291-17663310 None:intergenic 30.0%
! TATTACACCATCATGGATTT+TGG - chr5_3:17663651-17663670 None:intergenic 30.0%
! TTTACTTCCTTTTGAACAAC+TGG - chr5_3:17663691-17663710 None:intergenic 30.0%
ATAGAGATATCTCTTTCCTT+AGG + chr5_3:17663797-17663816 Msa0802860:intron 30.0%
CACTAAGTTTCTCATTTGTT+GGG - chr5_3:17663860-17663879 None:intergenic 30.0%
TTCTAATTATGGGACTACAA+GGG - chr5_3:17663894-17663913 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG - chr5_3:17663895-17663914 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG - chr5_3:17663926-17663945 None:intergenic 30.0%
AGAAATATTCTCTCTGTGTT+TGG + chr5_3:17664130-17664149 Msa0802860:intron 30.0%
! AAACCAAAGGTTGATTCTAT+TGG + chr5_3:17664181-17664200 Msa0802860:CDS 30.0%
TTTCCAATAGAATCAACCTT+TGG - chr5_3:17664187-17664206 None:intergenic 30.0%
!! TAACCTTTGGAATATAAAGG+GGG - chr5_3:17664236-17664255 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG - chr5_3:17664239-17664258 None:intergenic 30.0%
AAAACAAAAGGCTTAACCTT+TGG - chr5_3:17664249-17664268 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG + chr5_3:17664294-17664313 Msa0802860:intron 30.0%
TATTGCCATGCACATTATTA+TGG + chr5_3:17664370-17664389 Msa0802860:intron 30.0%
TTGTCCTTCACAAATTCAAA+TGG + chr5_3:17664442-17664461 Msa0802860:intron 30.0%
CTAACCATTTGAATTTGTGA+AGG - chr5_3:17664449-17664468 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG - chr5_3:17664699-17664718 None:intergenic 30.0%
TATGATTAAAGGGCTAAAAG+AGG - chr5_3:17664928-17664947 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG - chr5_3:17664990-17665009 None:intergenic 30.0%
AATTCAATGTGTTGTCGAAT+AGG - chr5_3:17665192-17665211 None:intergenic 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG + chr5_3:17665397-17665416 Msa0802860:intron 30.0%
GTGAATTCCAAATCCAAATT+AGG - chr5_3:17665500-17665519 None:intergenic 30.0%
TTAAAGTATGAAGTGATCCT+TGG + chr5_3:17665910-17665929 Msa0802860:three_prime_UTR 30.0%
! GATTTAAGATTGAGAGAGGA+AGG - chr5_3:17660129-17660148 None:intergenic 35.0%
!! CAAGCATTCAATCAAGTTGA+TGG - chr5_3:17660172-17660191 None:intergenic 35.0%
!!! TGGTTTTGGGTTTTGGATTT+TGG - chr5_3:17660401-17660420 None:intergenic 35.0%
!!! GTTTTTGTGGTTTTGGGTTT+TGG - chr5_3:17660408-17660427 None:intergenic 35.0%
!!! AACACTAGTTGTTTTGGTGA+AGG + chr5_3:17660430-17660449 Msa0802860:five_prime_UTR 35.0%
!!! GTTGTTGGTTTTGTATTTGG+AGG - chr5_3:17660518-17660537 None:intergenic 35.0%
AACAAACACAGAAGAGGAAA+TGG + chr5_3:17660559-17660578 Msa0802860:CDS 35.0%
! ACAGAAGAGGAAATGGATTT+GGG + chr5_3:17660566-17660585 Msa0802860:CDS 35.0%
TTGTTGGATTTGAAAGAGAG+AGG - chr5_3:17660670-17660689 None:intergenic 35.0%
CATCATCACTTCCAAAATAG+TGG + chr5_3:17660734-17660753 Msa0802860:CDS 35.0%
GTCTAAGAAAACCAAGTTCT+TGG - chr5_3:17660871-17660890 None:intergenic 35.0%
! GGTTTTCTTAGACCTATTAG+AGG + chr5_3:17660878-17660897 Msa0802860:CDS 35.0%
TGAAGTTGAGGGAATGATAA+AGG - chr5_3:17660929-17660948 None:intergenic 35.0%
! TTCAATCTCAAGCTTTGATG+AGG + chr5_3:17661047-17661066 Msa0802860:CDS 35.0%
GAAGATGAAGCATACTTTCA+TGG - chr5_3:17661183-17661202 None:intergenic 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG + chr5_3:17661452-17661471 Msa0802860:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG + chr5_3:17661493-17661512 Msa0802860:CDS 35.0%
AAGATGGTACGATTCTGATT+GGG + chr5_3:17661656-17661675 Msa0802860:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG + chr5_3:17661772-17661791 Msa0802860:intron 35.0%
TCCAATGGTTTCCTTAGAAA+GGG + chr5_3:17661773-17661792 Msa0802860:intron 35.0%
ATTGAGAGAAACCCTTTCTA+AGG - chr5_3:17661787-17661806 None:intergenic 35.0%
TCTGAAAACAAGTAGGACAA+AGG + chr5_3:17661955-17661974 Msa0802860:intron 35.0%
! AACTATGAGGTAGTTTGTCT+TGG - chr5_3:17662000-17662019 None:intergenic 35.0%
! CATTGAGTAATGATGGTGTT+TGG - chr5_3:17662376-17662395 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG + chr5_3:17662716-17662735 Msa0802860:intron 35.0%
GTGAAAACTACAGATAGAGT+AGG + chr5_3:17662738-17662757 Msa0802860:CDS 35.0%
TCTCCCTTAAACCATGAAAT+AGG + chr5_3:17662877-17662896 Msa0802860:intron 35.0%
CTCCCTTAAACCATGAAATA+GGG + chr5_3:17662878-17662897 Msa0802860:intron 35.0%
TGCCCTATTTCATGGTTTAA+GGG - chr5_3:17662883-17662902 None:intergenic 35.0%
TTGCCCTATTTCATGGTTTA+AGG - chr5_3:17662884-17662903 None:intergenic 35.0%
CAATCTGATGTATACGACAA+TGG + chr5_3:17662901-17662920 Msa0802860:CDS 35.0%
GATTTATCCATTAAGCAGCA+AGG + chr5_3:17662985-17663004 Msa0802860:CDS 35.0%
AAAACAACATCGTTAGGCTT+TGG - chr5_3:17663319-17663338 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG + chr5_3:17663371-17663390 Msa0802860:intron 35.0%
TTTATACTCACCTGACAAGT+GGG + chr5_3:17663372-17663391 Msa0802860:intron 35.0%
! CTACTACTTCTTTGAAGAGT+AGG - chr5_3:17663742-17663761 None:intergenic 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG + chr5_3:17663806-17663825 Msa0802860:intron 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG + chr5_3:17663807-17663826 Msa0802860:intron 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG + chr5_3:17663808-17663827 Msa0802860:intron 35.0%
! TTTTGTGGGGTTCAAACATT+AGG + chr5_3:17663821-17663840 Msa0802860:intron 35.0%
TCAAACATTAGGCTCTTGTA+TGG + chr5_3:17663832-17663851 Msa0802860:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG + chr5_3:17663833-17663852 Msa0802860:intron 35.0%
AAACATTAGGCTCTTGTATG+GGG + chr5_3:17663834-17663853 Msa0802860:intron 35.0%
GCACTAAGTTTCTCATTTGT+TGG - chr5_3:17663861-17663880 None:intergenic 35.0%
GCATTCATGGAAGTTTCAAA+GGG - chr5_3:17663940-17663959 None:intergenic 35.0%
AGCATTCATGGAAGTTTCAA+AGG - chr5_3:17663941-17663960 None:intergenic 35.0%
TCTCTGTGTTTGGTTGTAAT+AGG + chr5_3:17664140-17664159 Msa0802860:intron 35.0%
CTCTGTGTTTGGTTGTAATA+GGG + chr5_3:17664141-17664160 Msa0802860:intron 35.0%
TTGGTTACATGGTAAACCAA+AGG + chr5_3:17664168-17664187 Msa0802860:CDS 35.0%
ATTCCCCCTTTATATTCCAA+AGG + chr5_3:17664230-17664249 Msa0802860:intron 35.0%
! ATGTGTTTGGAATGCATGAA+AGG + chr5_3:17664307-17664326 Msa0802860:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG + chr5_3:17664308-17664327 Msa0802860:intron 35.0%
CATCTCCATAATAATGTGCA+TGG - chr5_3:17664378-17664397 None:intergenic 35.0%
AAATGAGGCAGGTTTAATAG+GGG - chr5_3:17664590-17664609 None:intergenic 35.0%
CAAATGAGGCAGGTTTAATA+GGG - chr5_3:17664591-17664610 None:intergenic 35.0%
TCAAATGAGGCAGGTTTAAT+AGG - chr5_3:17664592-17664611 None:intergenic 35.0%
ATAATTGAGTCAAATGAGGC+AGG - chr5_3:17664601-17664620 None:intergenic 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG - chr5_3:17664798-17664817 None:intergenic 35.0%
TAGTATTAGAGAACAGGTAG+AGG - chr5_3:17664871-17664890 None:intergenic 35.0%
ATTCCTATATAACCACTGCA+TGG - chr5_3:17665116-17665135 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG + chr5_3:17665434-17665453 Msa0802860:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG + chr5_3:17665458-17665477 Msa0802860:CDS 35.0%
AAGCCCAAAGAAACCTAATT+TGG + chr5_3:17665484-17665503 Msa0802860:CDS 35.0%
AACTGAAAGAGTTAGAGCAA+TGG + chr5_3:17665599-17665618 Msa0802860:three_prime_UTR 35.0%
GAGCTAAAGAAAGAAACACA+AGG + chr5_3:17665684-17665703 Msa0802860:three_prime_UTR 35.0%
ACAGAAAGCAACAAAAGAAG+AGG + chr5_3:17665718-17665737 Msa0802860:three_prime_UTR 35.0%
CAGAAAGCAACAAAAGAAGA+GGG + chr5_3:17665719-17665738 Msa0802860:three_prime_UTR 35.0%
AGAAAGCAACAAAAGAAGAG+GGG + chr5_3:17665720-17665739 Msa0802860:three_prime_UTR 35.0%
ACAATGAACTCTGATAGGAA+GGG - chr5_3:17665765-17665784 None:intergenic 35.0%
CTAACACAATGAACTCTGAT+AGG - chr5_3:17665770-17665789 None:intergenic 35.0%
! GTGATCCTTGGTAATTGTAA+TGG + chr5_3:17665922-17665941 Msa0802860:three_prime_UTR 35.0%
GACAAGGTATGTGAAGTGAA+TGG - chr5_3:17660034-17660053 None:intergenic 40.0%
!! GTGTGTTTTTGTGTGTGTGA+TGG - chr5_3:17660200-17660219 None:intergenic 40.0%
GGTGTGTAGATAGCAAAAGA+TGG + chr5_3:17660451-17660470 Msa0802860:exon 40.0%
AAAGACAAATCTGGTTGTGC+TGG - chr5_3:17660485-17660504 None:intergenic 40.0%
GAGAACAACAAACACAGAAG+AGG + chr5_3:17660553-17660572 Msa0802860:CDS 40.0%
! CACAGAAGAGGAAATGGATT+TGG + chr5_3:17660565-17660584 Msa0802860:CDS 40.0%
! CAGAAGAGGAAATGGATTTG+GGG + chr5_3:17660567-17660586 Msa0802860:CDS 40.0%
!! AGGAAATGGATTTGGGGTTT+TGG + chr5_3:17660573-17660592 Msa0802860:CDS 40.0%
! GGAAGTGATGATGATGAATG+AGG - chr5_3:17660727-17660746 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG - chr5_3:17660819-17660838 None:intergenic 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG - chr5_3:17660859-17660878 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG + chr5_3:17660857-17660876 Msa0802860:CDS 40.0%
AGTTGAGGGAATGATAAAGG+AGG - chr5_3:17660926-17660945 None:intergenic 40.0%
! CTCTCATGCTTCTTTTTGCT+GGG - chr5_3:17661093-17661112 None:intergenic 40.0%
ACATGTCAAGTCTCACTTAC+AGG + chr5_3:17661529-17661548 Msa0802860:CDS 40.0%
GAAGATGGTACGATTCTGAT+TGG + chr5_3:17661655-17661674 Msa0802860:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG - chr5_3:17661777-17661796 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG - chr5_3:17661853-17661872 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG - chr5_3:17661854-17661873 None:intergenic 40.0%
TCTAGCGCAAATGGCTAATA+TGG + chr5_3:17662122-17662141 Msa0802860:intron 40.0%
AAAGCTGCCATGGTAAAGAA+AGG - chr5_3:17662428-17662447 None:intergenic 40.0%
! CTTTAACCATGGTTAGTCAC+AGG + chr5_3:17662444-17662463 Msa0802860:intron 40.0%
CATCAGATTGCCCTATTTCA+TGG - chr5_3:17662891-17662910 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG + chr5_3:17662910-17662929 Msa0802860:CDS 40.0%
! TGATCTTCCTTGCTGCTTAA+TGG - chr5_3:17662995-17663014 None:intergenic 40.0%
TACTGTACAGCTGTATTTGC+AGG + chr5_3:17663188-17663207 Msa0802860:intron 40.0%
CAAAAGAATTCCCACTTGTC+AGG - chr5_3:17663385-17663404 None:intergenic 40.0%
CTCAACTTCACATGCAAACA+TGG + chr5_3:17663545-17663564 Msa0802860:intron 40.0%
CTTCACATGCAAACATGGTT+AGG + chr5_3:17663550-17663569 Msa0802860:intron 40.0%
! TTTTGGATGCTCATGGTTTG+TGG - chr5_3:17663634-17663653 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG - chr5_3:17663641-17663660 None:intergenic 40.0%
TGAGCATCCAAAATCCATGA+TGG + chr5_3:17663641-17663660 Msa0802860:intron 40.0%
CTCTCTTCCAGTTGTTCAAA+AGG + chr5_3:17663681-17663700 Msa0802860:intron 40.0%
TTGAACCCCACAAAATCCTA+AGG - chr5_3:17663816-17663835 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG + chr5_3:17664149-17664168 Msa0802860:intron 40.0%
AATAGGGAAGCTTGGTTACA+TGG + chr5_3:17664157-17664176 Msa0802860:intron 40.0%
TGGAAACATGCAATCTCTTG+AGG + chr5_3:17664201-17664220 Msa0802860:CDS 40.0%
AATGAGGCAGGTTTAATAGG+GGG - chr5_3:17664589-17664608 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG + chr5_3:17664755-17664774 Msa0802860:intron 40.0%
! GGGAAAGGAAATTTGAGATG+GGG - chr5_3:17664797-17664816 None:intergenic 40.0%
GAGGGAAAGGAAATTTGAGA+TGG - chr5_3:17664799-17664818 None:intergenic 40.0%
AGAACAGGTAGAGGAATCAA+AGG - chr5_3:17664862-17664881 None:intergenic 40.0%
GAACCATGCAGTGGTTATAT+AGG + chr5_3:17665110-17665129 Msa0802860:intron 40.0%
CTCTCATAGCTTAGACACTT+TGG - chr5_3:17665425-17665444 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG + chr5_3:17665503-17665522 Msa0802860:CDS 40.0%
GAAAGCAACAAAAGAAGAGG+GGG + chr5_3:17665721-17665740 Msa0802860:three_prime_UTR 40.0%
AAAGCAACAAAAGAAGAGGG+GGG + chr5_3:17665722-17665741 Msa0802860:three_prime_UTR 40.0%
CACAATGAACTCTGATAGGA+AGG - chr5_3:17665766-17665785 None:intergenic 40.0%
GTGCTCCATTACAATTACCA+AGG - chr5_3:17665930-17665949 None:intergenic 40.0%
AGAGAGAGAGAGAGATGACA+AGG - chr5_3:17660050-17660069 None:intergenic 45.0%
CTAGGTTAGAGACTGCAAGA+TGG - chr5_3:17660259-17660278 None:intergenic 45.0%
! AGACAGTTGGAAGGTTAGCT+AGG - chr5_3:17660277-17660296 None:intergenic 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG + chr5_3:17660586-17660605 Msa0802860:CDS 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG - chr5_3:17660818-17660837 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG - chr5_3:17660820-17660839 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG - chr5_3:17660824-17660843 None:intergenic 45.0%
!! AAGCTTTGGTGGTGTTGTTG+TGG - chr5_3:17660845-17660864 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG - chr5_3:17660856-17660875 None:intergenic 45.0%
!! GGAGGAGGGTTTTGATAAAC+AGG - chr5_3:17660908-17660927 None:intergenic 45.0%
GAGGGAATGATAAAGGAGGA+GGG - chr5_3:17660922-17660941 None:intergenic 45.0%
TGAGGGAATGATAAAGGAGG+AGG - chr5_3:17660923-17660942 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG - chr5_3:17661094-17661113 None:intergenic 45.0%
! AAAGAAGCATGAGAGCTCCA+AGG + chr5_3:17661098-17661117 Msa0802860:CDS 45.0%
GTTCATGCTGTTGAGCTCTT+AGG + chr5_3:17661154-17661173 Msa0802860:CDS 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG - chr5_3:17661994-17662013 None:intergenic 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG - chr5_3:17661995-17662014 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG - chr5_3:17662013-17662032 None:intergenic 45.0%
GAATTGAGGTCTAGCGCAAA+TGG + chr5_3:17662113-17662132 Msa0802860:intron 45.0%
! TACCATGGCAGCTTTAACCA+TGG + chr5_3:17662433-17662452 Msa0802860:intron 45.0%
AACCATGGTTAAAGCTGCCA+TGG - chr5_3:17662438-17662457 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG - chr5_3:17662725-17662744 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG + chr5_3:17662750-17662769 Msa0802860:CDS 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG + chr5_3:17663043-17663062 Msa0802860:CDS 45.0%
TGAGTGAGTGATCAAGAGAG+AGG - chr5_3:17663529-17663548 None:intergenic 45.0%
AATACACACGCCTGCATGAA+TGG + chr5_3:17664686-17664705 Msa0802860:intron 45.0%
CAAGTTCTATAGCACTTGGC+AGG + chr5_3:17664759-17664778 Msa0802860:intron 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG + chr5_3:17664767-17664786 Msa0802860:intron 45.0%
ATAAATGCTGTGTGGAGCAG+TGG + chr5_3:17665021-17665040 Msa0802860:intron 45.0%
TCAGTGGCTCGTAGAATCAT+TGG - chr5_3:17665092-17665111 None:intergenic 45.0%
ATAACCACTGCATGGTTCAG+TGG - chr5_3:17665108-17665127 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG - chr5_3:17665475-17665494 None:intergenic 45.0%
!! ATCTCAAAGAGGTTGGCCTA+GGG - chr5_3:17665522-17665541 None:intergenic 45.0%
!! AATCTCAAAGAGGTTGGCCT+AGG - chr5_3:17665523-17665542 None:intergenic 45.0%
GGGTGAAATCTCAAAGAGGT+TGG - chr5_3:17665529-17665548 None:intergenic 45.0%
GCTAGGGTGAAATCTCAAAG+AGG - chr5_3:17665533-17665552 None:intergenic 45.0%
AGAGTTAGAGCAATGGAAGC+TGG + chr5_3:17665606-17665625 Msa0802860:three_prime_UTR 45.0%
AACAAAAGAAGAGGGGGGTA+GGG + chr5_3:17665727-17665746 Msa0802860:three_prime_UTR 45.0%
AAAGAGACGTGAGAGAGAGA+GGG + chr5_3:17665870-17665889 Msa0802860:three_prime_UTR 45.0%
!! AAATAAATAAGTAAATAAAA+AGG - chr5_3:17661366-17661385 None:intergenic 5.0%
!!! AATTATTATTATTTTTTCTA+TGG + chr5_3:17661431-17661450 Msa0802860:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG - chr5_3:17662032-17662051 None:intergenic 5.0%
!! AAAAAAAATAGTATAAAAAA+AGG - chr5_3:17663104-17663123 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG + chr5_3:17663134-17663153 Msa0802860:intron 5.0%
!!! ATTTTATTACAAAAAAAAAA+TGG - chr5_3:17665342-17665361 None:intergenic 5.0%
GGTTAGAGACTGCAAGATGG+AGG - chr5_3:17660256-17660275 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG - chr5_3:17660817-17660836 None:intergenic 50.0%
!! GGTGGTGTTGTTGTGGTTGA+TGG - chr5_3:17660838-17660857 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG - chr5_3:17661118-17661137 None:intergenic 50.0%
CATGCTGTTGAGCTCTTAGG+TGG + chr5_3:17661157-17661176 Msa0802860:CDS 50.0%
TGGAAGCCTGTGACTAACCA+TGG - chr5_3:17662453-17662472 None:intergenic 50.0%
GCTGTATTTGCAGGAACCGT+TGG + chr5_3:17663197-17663216 Msa0802860:intron 50.0%
GTTGCAAGTTGCAGGAACGT+TGG - chr5_3:17663261-17663280 None:intergenic 50.0%
GTGTTGCAGTTGCAAGTTGC+AGG - chr5_3:17663269-17663288 None:intergenic 50.0%
GGACTACAAGGGCTTAGCTT+TGG - chr5_3:17663883-17663902 None:intergenic 50.0%
CAACAAAAGAAGAGGGGGGT+AGG + chr5_3:17665726-17665745 Msa0802860:three_prime_UTR 50.0%
GAAAGAGACGTGAGAGAGAG+AGG + chr5_3:17665869-17665888 Msa0802860:three_prime_UTR 50.0%
AAGAGACGTGAGAGAGAGAG+GGG + chr5_3:17665871-17665890 Msa0802860:three_prime_UTR 50.0%
TGAGAGCTCCAAGGATGCGT+TGG + chr5_3:17661107-17661126 Msa0802860:CDS 55.0%
GTTGCAGAAGAAGCAGGGAG+AGG - chr5_3:17661848-17661867 None:intergenic 55.0%
! AGAGAGAGGGGCGAGCTTTT+AGG + chr5_3:17665883-17665902 Msa0802860:three_prime_UTR 55.0%
CGAGCCACTGAACCATGCAG+TGG + chr5_3:17665101-17665120 Msa0802860:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17660017 17665985 17660017 ID=Msa0802860;Name=Msa0802860
chr5_3 mRNA 17660017 17665985 17660017 ID=Msa0802860-mRNA-1;Parent=Msa0802860;Name=Msa0802860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=413|1|1|1|0.83|0.71|7|447|398
chr5_3 exon 17660017 17660057 17660017 ID=Msa0802860-mRNA-1:exon:7302;Parent=Msa0802860-mRNA-1
chr5_3 exon 17660098 17661187 17660098 ID=Msa0802860-mRNA-1:exon:7303;Parent=Msa0802860-mRNA-1
chr5_3 exon 17661474 17661550 17661474 ID=Msa0802860-mRNA-1:exon:7304;Parent=Msa0802860-mRNA-1
chr5_3 exon 17662726 17662771 17662726 ID=Msa0802860-mRNA-1:exon:7305;Parent=Msa0802860-mRNA-1
chr5_3 exon 17662899 17663064 17662899 ID=Msa0802860-mRNA-1:exon:7306;Parent=Msa0802860-mRNA-1
chr5_3 exon 17664162 17664222 17664162 ID=Msa0802860-mRNA-1:exon:7307;Parent=Msa0802860-mRNA-1
chr5_3 exon 17665410 17665985 17665410 ID=Msa0802860-mRNA-1:exon:7308;Parent=Msa0802860-mRNA-1
chr5_3 five_prime_UTR 17660017 17660057 17660017 ID=Msa0802860-mRNA-1:five_prime_utr;Parent=Msa0802860-mRNA-1
chr5_3 five_prime_UTR 17660098 17660469 17660098 ID=Msa0802860-mRNA-1:five_prime_utr;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17660470 17661187 17660470 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17661474 17661550 17661474 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17662726 17662771 17662726 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17662899 17663064 17662899 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17664162 17664222 17664162 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 CDS 17665410 17665538 17665410 ID=Msa0802860-mRNA-1:cds;Parent=Msa0802860-mRNA-1
chr5_3 three_prime_UTR 17665539 17665985 17665539 ID=Msa0802860-mRNA-1:three_prime_utr;Parent=Msa0802860-mRNA-1
Gene Sequence

>Msa0802860

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACAAAACCAACAACAACAAGTAATTGGAAGAGAACAACAAACACAGAAGAGGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACTTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTATCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTACTACTACTACACCTTCTACTATTTCTAACAACAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>Msa0802860

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTNTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPYQSFHQNHYFQHPQPLFQHHQPQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNLNHLHILDGTTTTPSTISNNNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL*