AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0764080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764080 MtrunA17_Chr5g0414461 91.579 380 32 0 1 380 1 380 0.0 728
Msa0764080 MtrunA17_Chr5g0414421 76.546 388 81 2 1 380 31 416 0.0 601
Msa0764080 MtrunA17_Chr5g0414371 77.045 379 84 2 1 378 1 377 0.0 596
Msa0764080 MtrunA17_Chr5g0414441 73.522 389 92 3 1 380 1 387 0.0 572
Msa0764080 MtrunA17_Chr5g0414391 74.278 381 97 1 1 380 1 381 0.0 568
Msa0764080 MtrunA17_Chr0c01g0489311 48.500 400 185 8 1 380 1 399 2.18e-118 349
Msa0764080 MtrunA17_Chr6g0456421 41.278 407 203 10 1 380 1 398 1.92e-91 280
Msa0764080 MtrunA17_Chr5g0414451 64.646 99 35 0 113 211 1 99 8.37e-39 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0764080 AT1G13510.1 43.766 393 195 12 1 380 1 380 3.53e-94 286
Msa0764080 AT1G13540.1 44.924 394 190 12 1 380 1 381 1.26e-93 285
Msa0764080 AT1G13530.1 45.316 395 191 11 1 380 1 385 5.07e-93 284
Msa0764080 AT1G13480.1 42.462 398 200 11 1 380 1 387 1.98e-91 280
Msa0764080 AT1G13490.2 44.501 391 197 10 1 380 1 382 3.55e-90 276
Msa0764080 AT1G13520.1 42.569 397 201 12 1 380 1 387 1.98e-89 275
Msa0764080 AT1G13550.1 41.667 396 201 11 1 377 1 385 1.80e-86 267
Msa0764080 AT1G13470.1 42.239 393 199 12 1 380 1 378 9.22e-86 265
Msa0764080 AT1G13490.1 43.333 390 184 10 1 380 1 363 2.93e-83 258
Msa0764080 AT1G13500.1 44.051 395 197 13 1 380 1 386 4.84e-83 258
Msa0764080 AT1G61600.1 38.061 423 217 10 1 380 1 421 2.12e-81 255

Find 93 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCCTTGTGGTTTATTA+AGG 0.154134 5_2:+23502306 Msa0764080:CDS
CACATCAAATTAGGAGTAAA+TGG 0.158157 5_2:+23502951 Msa0764080:CDS
ATTACAAGATAACCGGAATT+TGG 0.183054 5_2:-23501579 None:intergenic
TTCCGGTTATCTTGTAATAT+TGG 0.219881 5_2:+23501584 Msa0764080:CDS
CCTTCCTTCACAAACATAAA+AGG 0.226109 5_2:-23502485 None:intergenic
ACTAGTGTATGCTGCCATTT+TGG 0.238420 5_2:+23502179 Msa0764080:CDS
AATCCGTTCTTGTTGGAAAA+TGG 0.247239 5_2:+23502456 Msa0764080:CDS
TCAGACTCTCACATCAAATT+AGG 0.256524 5_2:+23502942 Msa0764080:CDS
GCTCAAACTTACTCTTTCTT+TGG 0.280898 5_2:+23501615 Msa0764080:CDS
TAAAAGTGTTGGATTGAGTT+TGG 0.284883 5_2:+23502730 Msa0764080:CDS
GAAATAAGCAAGAAACGTTT+TGG 0.310305 5_2:+23502254 Msa0764080:CDS
AAAGTTGAAATCTGGTAGTT+TGG 0.320204 5_2:-23502411 None:intergenic
TTGAAGGAAAGGACGCTATT+CGG 0.343227 5_2:+23502657 Msa0764080:CDS
AGAAAATGTCATGTTTCTTC+CGG 0.357237 5_2:+23501725 Msa0764080:CDS
GTAACAAAACTTGAAGAGTT+TGG 0.360783 5_2:+23502824 Msa0764080:CDS
TGTGGAAGGACATTGGTATT+GGG 0.363284 5_2:+23501640 Msa0764080:CDS
CGTTCTGAATCCGTTCTTGT+TGG 0.367660 5_2:+23502449 Msa0764080:CDS
TGAAGGAAAGGACGCTATTC+GGG 0.374571 5_2:+23502658 Msa0764080:CDS
AATTCCTTGTGGTTTATTAA+GGG 0.379479 5_2:+23502307 Msa0764080:CDS
GAAGGAAGGAATGACATTAA+AGG 0.380941 5_2:+23502499 Msa0764080:CDS
CCTTTGAATTTAAGTTTGCT+TGG 0.389776 5_2:-23502142 None:intergenic
TCAGAACGATCATTGGATAA+TGG 0.395582 5_2:-23502434 None:intergenic
CCACCATCAGGTCCAAATTC+CGG 0.397966 5_2:+23501567 Msa0764080:CDS
CTTACTCTTTCTTTGGTTTG+TGG 0.402118 5_2:+23501622 Msa0764080:CDS
TCACTCAAATGGTAGTTTGT+AGG 0.403643 5_2:-23502359 None:intergenic
GATAATGGAAAGTTGAAATC+TGG 0.412822 5_2:-23502419 None:intergenic
ATCCAATATTACAAGATAAC+CGG 0.416469 5_2:-23501586 None:intergenic
TTGTGGAAGGACATTGGTAT+TGG 0.416602 5_2:+23501639 Msa0764080:CDS
GAAAGGTTTGGATGGAATGC+TGG 0.429285 5_2:+23502782 Msa0764080:CDS
AACGGATTCAGAACGATCAT+TGG 0.436701 5_2:-23502441 None:intergenic
AAATGGGAACAAGAAAGGTT+TGG 0.437035 5_2:+23502770 Msa0764080:CDS
CTACCATTTGAGTGAAGCCT+TGG 0.441404 5_2:+23502367 Msa0764080:CDS
AATGACATTAAAGGAACAAA+TGG 0.441616 5_2:+23502508 Msa0764080:CDS
TATTCGGGATGAAAATAGAT+TGG 0.446685 5_2:+23502673 Msa0764080:CDS
CTCTTTCTTTGGTTTGTGGA+AGG 0.448953 5_2:+23501626 Msa0764080:CDS
AAGCCAAGGCTTCACTCAAA+TGG 0.451311 5_2:-23502370 None:intergenic
ACAGAAGTTGCTAAGGTTGA+AGG 0.453239 5_2:+23502641 Msa0764080:CDS
AGTTGACGCTCGAGCAAAGA+TGG 0.461286 5_2:+23502549 Msa0764080:CDS
GATGAAAATAGATTGGTTGA+TGG 0.466232 5_2:+23502680 Msa0764080:CDS
GGCTCCTTTCCATGTACAAA+AGG 0.475308 5_2:+23501520 Msa0764080:CDS
GTTTGGATGGAATGCTGGGA+AGG 0.480324 5_2:+23502787 Msa0764080:CDS
AGTGTTGAAGATAAAAGTGT+TGG 0.485922 5_2:+23502719 Msa0764080:CDS
AGAAGGAAGGGGAAGAATCA+AGG 0.491543 5_2:+23501789 Msa0764080:CDS
CTTTCAGATCCACCACCATC+AGG 0.493605 5_2:+23501555 Msa0764080:CDS
TCCTTCTTATGACATAATAA+CGG 0.494132 5_2:-23501773 None:intergenic
ACCGTTATTATGTCATAAGA+AGG 0.496211 5_2:+23501772 Msa0764080:CDS
ACATCAAATTAGGAGTAAAT+GGG 0.504473 5_2:+23502952 Msa0764080:CDS
ATCTGGTAGTTTGGAACGCA+AGG 0.505664 5_2:-23502402 None:intergenic
TTTGGATGGAATGCTGGGAA+GGG 0.507438 5_2:+23502788 Msa0764080:CDS
AAACTTAAATTCAAAGGAAG+AGG 0.508991 5_2:+23502148 Msa0764080:CDS
AATTTGTTGATAATGATTGA+AGG 0.512989 5_2:-23502231 None:intergenic
AAATGTTTGTTCTGAGGGAA+AGG 0.513031 5_2:-23501669 None:intergenic
GCCGAGTCAGTTGCCTCGGA+TGG 0.514029 5_2:+23502284 Msa0764080:CDS
TCATGCCGAGTCAGTTGCCT+CGG 0.520151 5_2:+23502280 Msa0764080:CDS
TTTGGTTTGTGGAAGGACAT+TGG 0.522019 5_2:+23501633 Msa0764080:CDS
ATTTGTTGATAATGATTGAA+GGG 0.523333 5_2:-23502230 None:intergenic
TGATATTAAAACAAGTCCCT+TGG 0.523624 5_2:+23502205 Msa0764080:CDS
GGGAACAAGAAAGGTTTGGA+TGG 0.524181 5_2:+23502774 Msa0764080:CDS
GAAGGAAGGGGAAGAATCAA+GGG 0.524849 5_2:+23501790 Msa0764080:CDS
GACAATGGTTGATTCAATAC+CGG 0.525844 5_2:-23501744 None:intergenic
CAAGGAATCATTTGAAGCCA+AGG 0.529560 5_2:-23502384 None:intergenic
GAATGAAATGGGAACAAGAA+AGG 0.531154 5_2:+23502765 Msa0764080:CDS
CCAAGCAAACTTAAATTCAA+AGG 0.533386 5_2:+23502142 Msa0764080:CDS
TAAATTTAGTTGTTATGTGT+TGG 0.533784 5_2:+23502865 Msa0764080:CDS
AGTTTGGTGGAACAAACAAA+TGG 0.535620 5_2:+23502840 Msa0764080:CDS
TGGTTAAATGTTTGTTCTGA+GGG 0.543646 5_2:-23501674 None:intergenic
AGTTGTTGAGGGAATGAAAT+GGG 0.546947 5_2:+23502754 Msa0764080:CDS
TATTCAAACAGAAGTTGCTA+AGG 0.547553 5_2:+23502634 Msa0764080:CDS
TCCATCCGAGGCAACTGACT+CGG 0.549619 5_2:-23502285 None:intergenic
TTATTATGTCATAAGAAGGA+AGG 0.558609 5_2:+23501776 Msa0764080:CDS
TTGAGTTTGGAAGTTGTTGA+GGG 0.559577 5_2:+23502743 Msa0764080:CDS
GGTGGATCTGAAAGAGCACT+AGG 0.560326 5_2:-23501546 None:intergenic
AAAGGTTTGGATGGAATGCT+GGG 0.561735 5_2:+23502783 Msa0764080:CDS
GCCTCGGATGGAATTCCTTG+TGG 0.570357 5_2:+23502296 Msa0764080:CDS
ATGGTTAAATGTTTGTTCTG+AGG 0.571762 5_2:-23501675 None:intergenic
TATTATGTCATAAGAAGGAA+GGG 0.576465 5_2:+23501777 Msa0764080:CDS
ACAAAACTTGAAGAGTTTGG+TGG 0.583800 5_2:+23502827 Msa0764080:CDS
CAAATGGTAGTTTGTAGGAG+TGG 0.588488 5_2:-23502354 None:intergenic
TAACCGGAATTTGGACCTGA+TGG 0.589112 5_2:-23501570 None:intergenic
ATAATGATTGAAGGGCTCCA+AGG 0.592883 5_2:-23502222 None:intergenic
ATTGAGTTTGGAAGTTGTTG+AGG 0.595211 5_2:+23502742 Msa0764080:CDS
GTTGACGCTCGAGCAAAGAT+GGG 0.596375 5_2:+23502550 Msa0764080:CDS
TAATGATTGAAGGGCTCCAA+GGG 0.597144 5_2:-23502221 None:intergenic
AGTTGCTAAGGTTGAAGGAA+AGG 0.599670 5_2:+23502646 Msa0764080:CDS
TATACCTTCAAAATCACTGA+TGG 0.602792 5_2:-23501694 None:intergenic
TAATAACGGTTTGAAGACAA+TGG 0.606208 5_2:-23501759 None:intergenic
GAATTTGGACCTGATGGTGG+TGG 0.611269 5_2:-23501564 None:intergenic
AAGTTGTTGAGGGAATGAAA+TGG 0.611433 5_2:+23502753 Msa0764080:CDS
ATTATGTCATAAGAAGGAAG+GGG 0.660728 5_2:+23501778 Msa0764080:CDS
TAGGGAAAATGTATGCAGCA+AGG 0.670125 5_2:+23501499 None:intergenic
GTGGATCTGAAAGAGCACTA+GGG 0.671016 5_2:-23501545 None:intergenic
ACCACAAGGAATTCCATCCG+AGG 0.692906 5_2:-23502297 None:intergenic
CCGGAATTTGGACCTGATGG+TGG 0.694514 5_2:-23501567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAATATAATGTTCA+AGG + chr5_2:23501900-23501919 Msa0764080:intron 10.0%
!! ATAATAGTAAATAATCAATA+AGG - chr5_2:23501956-23501975 None:intergenic 10.0%
!!! AATTTTAAATATAATGTTCA+AGG + chr5_2:23501900-23501919 Msa0764080:intron 10.0%
!! ATAATAGTAAATAATCAATA+AGG - chr5_2:23501956-23501975 None:intergenic 10.0%
!!! AATAGATTAGTTATTATAAG+TGG + chr5_2:23502071-23502090 Msa0764080:intron 15.0%
!!! AATAGATTAGTTATTATAAG+TGG + chr5_2:23502071-23502090 Msa0764080:intron 15.0%
!!! ATATTTTTTTAATTCCGTGT+AGG + chr5_2:23501844-23501863 Msa0764080:intron 20.0%
!!! ATTTGTTGATAATGATTGAA+GGG - chr5_2:23502233-23502252 None:intergenic 20.0%
!!! AATTTGTTGATAATGATTGA+AGG - chr5_2:23502234-23502253 None:intergenic 20.0%
!! TAAATTTAGTTGTTATGTGT+TGG + chr5_2:23502865-23502884 Msa0764080:CDS 20.0%
!!! AAGTTTTGTATTAAAGAGAA+TGG + chr5_2:23502892-23502911 Msa0764080:CDS 20.0%
!!! ATATTTTTTTAATTCCGTGT+AGG + chr5_2:23501844-23501863 Msa0764080:intron 20.0%
!!! ATTTGTTGATAATGATTGAA+GGG - chr5_2:23502233-23502252 None:intergenic 20.0%
!!! AATTTGTTGATAATGATTGA+AGG - chr5_2:23502234-23502253 None:intergenic 20.0%
!! TAAATTTAGTTGTTATGTGT+TGG + chr5_2:23502865-23502884 Msa0764080:CDS 20.0%
!!! AAGTTTTGTATTAAAGAGAA+TGG + chr5_2:23502892-23502911 Msa0764080:CDS 20.0%
! ATCCAATATTACAAGATAAC+CGG - chr5_2:23501589-23501608 None:intergenic 25.0%
! TCCTTCTTATGACATAATAA+CGG - chr5_2:23501776-23501795 None:intergenic 25.0%
! TTATTATGTCATAAGAAGGA+AGG + chr5_2:23501776-23501795 Msa0764080:CDS 25.0%
! TATTATGTCATAAGAAGGAA+GGG + chr5_2:23501777-23501796 Msa0764080:CDS 25.0%
! AGTTATAATGTTCGATTCTA+AGG - chr5_2:23501932-23501951 None:intergenic 25.0%
! AAACTTAAATTCAAAGGAAG+AGG + chr5_2:23502148-23502167 Msa0764080:CDS 25.0%
!! TTTTAATATCATGGCCAAAA+TGG - chr5_2:23502196-23502215 None:intergenic 25.0%
! AATTCCTTGTGGTTTATTAA+GGG + chr5_2:23502307-23502326 Msa0764080:CDS 25.0%
! AATGACATTAAAGGAACAAA+TGG + chr5_2:23502508-23502527 Msa0764080:CDS 25.0%
! ACATCAAATTAGGAGTAAAT+GGG + chr5_2:23502952-23502971 Msa0764080:CDS 25.0%
! ATCCAATATTACAAGATAAC+CGG - chr5_2:23501589-23501608 None:intergenic 25.0%
! TCCTTCTTATGACATAATAA+CGG - chr5_2:23501776-23501795 None:intergenic 25.0%
! TTATTATGTCATAAGAAGGA+AGG + chr5_2:23501776-23501795 Msa0764080:CDS 25.0%
! TATTATGTCATAAGAAGGAA+GGG + chr5_2:23501777-23501796 Msa0764080:CDS 25.0%
! AGTTATAATGTTCGATTCTA+AGG - chr5_2:23501932-23501951 None:intergenic 25.0%
! AAACTTAAATTCAAAGGAAG+AGG + chr5_2:23502148-23502167 Msa0764080:CDS 25.0%
!! TTTTAATATCATGGCCAAAA+TGG - chr5_2:23502196-23502215 None:intergenic 25.0%
! AATTCCTTGTGGTTTATTAA+GGG + chr5_2:23502307-23502326 Msa0764080:CDS 25.0%
! AATGACATTAAAGGAACAAA+TGG + chr5_2:23502508-23502527 Msa0764080:CDS 25.0%
! ACATCAAATTAGGAGTAAAT+GGG + chr5_2:23502952-23502971 Msa0764080:CDS 25.0%
ATTACAAGATAACCGGAATT+TGG - chr5_2:23501582-23501601 None:intergenic 30.0%
TTCCGGTTATCTTGTAATAT+TGG + chr5_2:23501584-23501603 Msa0764080:CDS 30.0%
TGGTTAAATGTTTGTTCTGA+GGG - chr5_2:23501677-23501696 None:intergenic 30.0%
ATGGTTAAATGTTTGTTCTG+AGG - chr5_2:23501678-23501697 None:intergenic 30.0%
! TTAACCATCAGTGATTTTGA+AGG + chr5_2:23501690-23501709 Msa0764080:CDS 30.0%
TATACCTTCAAAATCACTGA+TGG - chr5_2:23501697-23501716 None:intergenic 30.0%
AGAAAATGTCATGTTTCTTC+CGG + chr5_2:23501725-23501744 Msa0764080:CDS 30.0%
TAATAACGGTTTGAAGACAA+TGG - chr5_2:23501762-23501781 None:intergenic 30.0%
ACCGTTATTATGTCATAAGA+AGG + chr5_2:23501772-23501791 Msa0764080:CDS 30.0%
ATTATGTCATAAGAAGGAAG+GGG + chr5_2:23501778-23501797 Msa0764080:CDS 30.0%
TATGTCTTAAGCACACAATA+AGG - chr5_2:23501997-23502016 None:intergenic 30.0%
! AGACATATTTTTCACGTTCT+AGG + chr5_2:23502035-23502054 Msa0764080:intron 30.0%
! CCTTTGAATTTAAGTTTGCT+TGG - chr5_2:23502145-23502164 None:intergenic 30.0%
CCAAGCAAACTTAAATTCAA+AGG + chr5_2:23502142-23502161 Msa0764080:CDS 30.0%
!!! AGGGACTTGTTTTAATATCA+TGG - chr5_2:23502205-23502224 None:intergenic 30.0%
TGATATTAAAACAAGTCCCT+TGG + chr5_2:23502205-23502224 Msa0764080:CDS 30.0%
! GAAATAAGCAAGAAACGTTT+TGG + chr5_2:23502254-23502273 Msa0764080:CDS 30.0%
GAATTCCTTGTGGTTTATTA+AGG + chr5_2:23502306-23502325 Msa0764080:CDS 30.0%
! TTTTCCCTTAATAAACCACA+AGG - chr5_2:23502314-23502333 None:intergenic 30.0%
GTTTATTAAGGGAAAAAGTG+TGG + chr5_2:23502318-23502337 Msa0764080:CDS 30.0%
AAAGTTGAAATCTGGTAGTT+TGG - chr5_2:23502414-23502433 None:intergenic 30.0%
!! GATAATGGAAAGTTGAAATC+TGG - chr5_2:23502422-23502441 None:intergenic 30.0%
! ATACCATTTTCCAACAAGAA+CGG - chr5_2:23502462-23502481 None:intergenic 30.0%
! TTGTCCTTTTATGTTTGTGA+AGG + chr5_2:23502481-23502500 Msa0764080:CDS 30.0%
TATTCAAACAGAAGTTGCTA+AGG + chr5_2:23502634-23502653 Msa0764080:CDS 30.0%
TATTCGGGATGAAAATAGAT+TGG + chr5_2:23502673-23502692 Msa0764080:CDS 30.0%
! GATGAAAATAGATTGGTTGA+TGG + chr5_2:23502680-23502699 Msa0764080:CDS 30.0%
! AGTGTTGAAGATAAAAGTGT+TGG + chr5_2:23502719-23502738 Msa0764080:CDS 30.0%
!! TAAAAGTGTTGGATTGAGTT+TGG + chr5_2:23502730-23502749 Msa0764080:CDS 30.0%
GTAACAAAACTTGAAGAGTT+TGG + chr5_2:23502824-23502843 Msa0764080:CDS 30.0%
CACATCAAATTAGGAGTAAA+TGG + chr5_2:23502951-23502970 Msa0764080:CDS 30.0%
ATTACAAGATAACCGGAATT+TGG - chr5_2:23501582-23501601 None:intergenic 30.0%
TTCCGGTTATCTTGTAATAT+TGG + chr5_2:23501584-23501603 Msa0764080:CDS 30.0%
TGGTTAAATGTTTGTTCTGA+GGG - chr5_2:23501677-23501696 None:intergenic 30.0%
ATGGTTAAATGTTTGTTCTG+AGG - chr5_2:23501678-23501697 None:intergenic 30.0%
! TTAACCATCAGTGATTTTGA+AGG + chr5_2:23501690-23501709 Msa0764080:CDS 30.0%
TATACCTTCAAAATCACTGA+TGG - chr5_2:23501697-23501716 None:intergenic 30.0%
AGAAAATGTCATGTTTCTTC+CGG + chr5_2:23501725-23501744 Msa0764080:CDS 30.0%
TAATAACGGTTTGAAGACAA+TGG - chr5_2:23501762-23501781 None:intergenic 30.0%
ACCGTTATTATGTCATAAGA+AGG + chr5_2:23501772-23501791 Msa0764080:CDS 30.0%
ATTATGTCATAAGAAGGAAG+GGG + chr5_2:23501778-23501797 Msa0764080:CDS 30.0%
TATGTCTTAAGCACACAATA+AGG - chr5_2:23501997-23502016 None:intergenic 30.0%
! AGACATATTTTTCACGTTCT+AGG + chr5_2:23502035-23502054 Msa0764080:intron 30.0%
! CCTTTGAATTTAAGTTTGCT+TGG - chr5_2:23502145-23502164 None:intergenic 30.0%
CCAAGCAAACTTAAATTCAA+AGG + chr5_2:23502142-23502161 Msa0764080:CDS 30.0%
!!! AGGGACTTGTTTTAATATCA+TGG - chr5_2:23502205-23502224 None:intergenic 30.0%
TGATATTAAAACAAGTCCCT+TGG + chr5_2:23502205-23502224 Msa0764080:CDS 30.0%
! GAAATAAGCAAGAAACGTTT+TGG + chr5_2:23502254-23502273 Msa0764080:CDS 30.0%
GAATTCCTTGTGGTTTATTA+AGG + chr5_2:23502306-23502325 Msa0764080:CDS 30.0%
! TTTTCCCTTAATAAACCACA+AGG - chr5_2:23502314-23502333 None:intergenic 30.0%
GTTTATTAAGGGAAAAAGTG+TGG + chr5_2:23502318-23502337 Msa0764080:CDS 30.0%
AAAGTTGAAATCTGGTAGTT+TGG - chr5_2:23502414-23502433 None:intergenic 30.0%
!! GATAATGGAAAGTTGAAATC+TGG - chr5_2:23502422-23502441 None:intergenic 30.0%
! ATACCATTTTCCAACAAGAA+CGG - chr5_2:23502462-23502481 None:intergenic 30.0%
! TTGTCCTTTTATGTTTGTGA+AGG + chr5_2:23502481-23502500 Msa0764080:CDS 30.0%
TATTCAAACAGAAGTTGCTA+AGG + chr5_2:23502634-23502653 Msa0764080:CDS 30.0%
TATTCGGGATGAAAATAGAT+TGG + chr5_2:23502673-23502692 Msa0764080:CDS 30.0%
! GATGAAAATAGATTGGTTGA+TGG + chr5_2:23502680-23502699 Msa0764080:CDS 30.0%
! AGTGTTGAAGATAAAAGTGT+TGG + chr5_2:23502719-23502738 Msa0764080:CDS 30.0%
!! TAAAAGTGTTGGATTGAGTT+TGG + chr5_2:23502730-23502749 Msa0764080:CDS 30.0%
GTAACAAAACTTGAAGAGTT+TGG + chr5_2:23502824-23502843 Msa0764080:CDS 30.0%
CACATCAAATTAGGAGTAAA+TGG + chr5_2:23502951-23502970 Msa0764080:CDS 30.0%
GCTCAAACTTACTCTTTCTT+TGG + chr5_2:23501615-23501634 Msa0764080:CDS 35.0%
!! CTTACTCTTTCTTTGGTTTG+TGG + chr5_2:23501622-23501641 Msa0764080:CDS 35.0%
!! AAATGTTTGTTCTGAGGGAA+AGG - chr5_2:23501672-23501691 None:intergenic 35.0%
! GACAATGGTTGATTCAATAC+CGG - chr5_2:23501747-23501766 None:intergenic 35.0%
! TGAATTTAAGTTTGCTTGGC+TGG - chr5_2:23502141-23502160 None:intergenic 35.0%
! TCACTCAAATGGTAGTTTGT+AGG - chr5_2:23502362-23502381 None:intergenic 35.0%
TCAGAACGATCATTGGATAA+TGG - chr5_2:23502437-23502456 None:intergenic 35.0%
AATCCGTTCTTGTTGGAAAA+TGG + chr5_2:23502456-23502475 Msa0764080:CDS 35.0%
CCTTCCTTCACAAACATAAA+AGG - chr5_2:23502488-23502507 None:intergenic 35.0%
! CCTTTTATGTTTGTGAAGGA+AGG + chr5_2:23502485-23502504 Msa0764080:CDS 35.0%
GAAGGAAGGAATGACATTAA+AGG + chr5_2:23502499-23502518 Msa0764080:CDS 35.0%
ATTGAGTTTGGAAGTTGTTG+AGG + chr5_2:23502742-23502761 Msa0764080:CDS 35.0%
TTGAGTTTGGAAGTTGTTGA+GGG + chr5_2:23502743-23502762 Msa0764080:CDS 35.0%
AAGTTGTTGAGGGAATGAAA+TGG + chr5_2:23502753-23502772 Msa0764080:CDS 35.0%
AGTTGTTGAGGGAATGAAAT+GGG + chr5_2:23502754-23502773 Msa0764080:CDS 35.0%
GAATGAAATGGGAACAAGAA+AGG + chr5_2:23502765-23502784 Msa0764080:CDS 35.0%
AAATGGGAACAAGAAAGGTT+TGG + chr5_2:23502770-23502789 Msa0764080:CDS 35.0%
ACAAAACTTGAAGAGTTTGG+TGG + chr5_2:23502827-23502846 Msa0764080:CDS 35.0%
! AGTTTGGTGGAACAAACAAA+TGG + chr5_2:23502840-23502859 Msa0764080:CDS 35.0%
TCAGACTCTCACATCAAATT+AGG + chr5_2:23502942-23502961 Msa0764080:CDS 35.0%
GCTCAAACTTACTCTTTCTT+TGG + chr5_2:23501615-23501634 Msa0764080:CDS 35.0%
!! CTTACTCTTTCTTTGGTTTG+TGG + chr5_2:23501622-23501641 Msa0764080:CDS 35.0%
!! AAATGTTTGTTCTGAGGGAA+AGG - chr5_2:23501672-23501691 None:intergenic 35.0%
! GACAATGGTTGATTCAATAC+CGG - chr5_2:23501747-23501766 None:intergenic 35.0%
! TGAATTTAAGTTTGCTTGGC+TGG - chr5_2:23502141-23502160 None:intergenic 35.0%
! TCACTCAAATGGTAGTTTGT+AGG - chr5_2:23502362-23502381 None:intergenic 35.0%
TCAGAACGATCATTGGATAA+TGG - chr5_2:23502437-23502456 None:intergenic 35.0%
AATCCGTTCTTGTTGGAAAA+TGG + chr5_2:23502456-23502475 Msa0764080:CDS 35.0%
CCTTCCTTCACAAACATAAA+AGG - chr5_2:23502488-23502507 None:intergenic 35.0%
! CCTTTTATGTTTGTGAAGGA+AGG + chr5_2:23502485-23502504 Msa0764080:CDS 35.0%
GAAGGAAGGAATGACATTAA+AGG + chr5_2:23502499-23502518 Msa0764080:CDS 35.0%
ATTGAGTTTGGAAGTTGTTG+AGG + chr5_2:23502742-23502761 Msa0764080:CDS 35.0%
TTGAGTTTGGAAGTTGTTGA+GGG + chr5_2:23502743-23502762 Msa0764080:CDS 35.0%
AAGTTGTTGAGGGAATGAAA+TGG + chr5_2:23502753-23502772 Msa0764080:CDS 35.0%
AGTTGTTGAGGGAATGAAAT+GGG + chr5_2:23502754-23502773 Msa0764080:CDS 35.0%
GAATGAAATGGGAACAAGAA+AGG + chr5_2:23502765-23502784 Msa0764080:CDS 35.0%
AAATGGGAACAAGAAAGGTT+TGG + chr5_2:23502770-23502789 Msa0764080:CDS 35.0%
ACAAAACTTGAAGAGTTTGG+TGG + chr5_2:23502827-23502846 Msa0764080:CDS 35.0%
! AGTTTGGTGGAACAAACAAA+TGG + chr5_2:23502840-23502859 Msa0764080:CDS 35.0%
TCAGACTCTCACATCAAATT+AGG + chr5_2:23502942-23502961 Msa0764080:CDS 35.0%
! GGTTCCTTTTGTACATGGAA+AGG - chr5_2:23501527-23501546 None:intergenic 40.0%
! ACTAGGGTTCCTTTTGTACA+TGG - chr5_2:23501532-23501551 None:intergenic 40.0%
!! CTCTTTCTTTGGTTTGTGGA+AGG + chr5_2:23501626-23501645 Msa0764080:CDS 40.0%
!! TTTGGTTTGTGGAAGGACAT+TGG + chr5_2:23501633-23501652 Msa0764080:CDS 40.0%
TTGTGGAAGGACATTGGTAT+TGG + chr5_2:23501639-23501658 Msa0764080:CDS 40.0%
TGTGGAAGGACATTGGTATT+GGG + chr5_2:23501640-23501659 Msa0764080:CDS 40.0%
CATCAATTGAGCTACCTACA+CGG - chr5_2:23501861-23501880 None:intergenic 40.0%
!! ACTAGTGTATGCTGCCATTT+TGG + chr5_2:23502179-23502198 Msa0764080:CDS 40.0%
TAATGATTGAAGGGCTCCAA+GGG - chr5_2:23502224-23502243 None:intergenic 40.0%
ATAATGATTGAAGGGCTCCA+AGG - chr5_2:23502225-23502244 None:intergenic 40.0%
! CAAATGGTAGTTTGTAGGAG+TGG - chr5_2:23502357-23502376 None:intergenic 40.0%
! CAAGGAATCATTTGAAGCCA+AGG - chr5_2:23502387-23502406 None:intergenic 40.0%
! AACGGATTCAGAACGATCAT+TGG - chr5_2:23502444-23502463 None:intergenic 40.0%
ACAGAAGTTGCTAAGGTTGA+AGG + chr5_2:23502641-23502660 Msa0764080:CDS 40.0%
AGTTGCTAAGGTTGAAGGAA+AGG + chr5_2:23502646-23502665 Msa0764080:CDS 40.0%
TTGAAGGAAAGGACGCTATT+CGG + chr5_2:23502657-23502676 Msa0764080:CDS 40.0%
!!! GATTGGTTGATGGAGTTTTG+TGG + chr5_2:23502690-23502709 Msa0764080:CDS 40.0%
AAAGGTTTGGATGGAATGCT+GGG + chr5_2:23502783-23502802 Msa0764080:CDS 40.0%
! GGTTCCTTTTGTACATGGAA+AGG - chr5_2:23501527-23501546 None:intergenic 40.0%
! ACTAGGGTTCCTTTTGTACA+TGG - chr5_2:23501532-23501551 None:intergenic 40.0%
!! CTCTTTCTTTGGTTTGTGGA+AGG + chr5_2:23501626-23501645 Msa0764080:CDS 40.0%
!! TTTGGTTTGTGGAAGGACAT+TGG + chr5_2:23501633-23501652 Msa0764080:CDS 40.0%
TTGTGGAAGGACATTGGTAT+TGG + chr5_2:23501639-23501658 Msa0764080:CDS 40.0%
TGTGGAAGGACATTGGTATT+GGG + chr5_2:23501640-23501659 Msa0764080:CDS 40.0%
CATCAATTGAGCTACCTACA+CGG - chr5_2:23501861-23501880 None:intergenic 40.0%
!! ACTAGTGTATGCTGCCATTT+TGG + chr5_2:23502179-23502198 Msa0764080:CDS 40.0%
TAATGATTGAAGGGCTCCAA+GGG - chr5_2:23502224-23502243 None:intergenic 40.0%
ATAATGATTGAAGGGCTCCA+AGG - chr5_2:23502225-23502244 None:intergenic 40.0%
! CAAATGGTAGTTTGTAGGAG+TGG - chr5_2:23502357-23502376 None:intergenic 40.0%
! CAAGGAATCATTTGAAGCCA+AGG - chr5_2:23502387-23502406 None:intergenic 40.0%
! AACGGATTCAGAACGATCAT+TGG - chr5_2:23502444-23502463 None:intergenic 40.0%
ACAGAAGTTGCTAAGGTTGA+AGG + chr5_2:23502641-23502660 Msa0764080:CDS 40.0%
AGTTGCTAAGGTTGAAGGAA+AGG + chr5_2:23502646-23502665 Msa0764080:CDS 40.0%
TTGAAGGAAAGGACGCTATT+CGG + chr5_2:23502657-23502676 Msa0764080:CDS 40.0%
!!! GATTGGTTGATGGAGTTTTG+TGG + chr5_2:23502690-23502709 Msa0764080:CDS 40.0%
AAAGGTTTGGATGGAATGCT+GGG + chr5_2:23502783-23502802 Msa0764080:CDS 40.0%
GGCTCCTTTCCATGTACAAA+AGG + chr5_2:23501520-23501539 Msa0764080:CDS 45.0%
!! GTGGATCTGAAAGAGCACTA+GGG - chr5_2:23501548-23501567 None:intergenic 45.0%
TAACCGGAATTTGGACCTGA+TGG - chr5_2:23501573-23501592 None:intergenic 45.0%
AGAAGGAAGGGGAAGAATCA+AGG + chr5_2:23501789-23501808 Msa0764080:CDS 45.0%
GAAGGAAGGGGAAGAATCAA+GGG + chr5_2:23501790-23501809 Msa0764080:CDS 45.0%
CTACCATTTGAGTGAAGCCT+TGG + chr5_2:23502367-23502386 Msa0764080:CDS 45.0%
AAGCCAAGGCTTCACTCAAA+TGG - chr5_2:23502373-23502392 None:intergenic 45.0%
! ATCTGGTAGTTTGGAACGCA+AGG - chr5_2:23502405-23502424 None:intergenic 45.0%
! CGTTCTGAATCCGTTCTTGT+TGG + chr5_2:23502449-23502468 Msa0764080:CDS 45.0%
TGAAGGAAAGGACGCTATTC+GGG + chr5_2:23502658-23502677 Msa0764080:CDS 45.0%
GGGAACAAGAAAGGTTTGGA+TGG + chr5_2:23502774-23502793 Msa0764080:CDS 45.0%
GAAAGGTTTGGATGGAATGC+TGG + chr5_2:23502782-23502801 Msa0764080:CDS 45.0%
TTTGGATGGAATGCTGGGAA+GGG + chr5_2:23502788-23502807 Msa0764080:CDS 45.0%
GGCTCCTTTCCATGTACAAA+AGG + chr5_2:23501520-23501539 Msa0764080:CDS 45.0%
!! GTGGATCTGAAAGAGCACTA+GGG - chr5_2:23501548-23501567 None:intergenic 45.0%
TAACCGGAATTTGGACCTGA+TGG - chr5_2:23501573-23501592 None:intergenic 45.0%
AGAAGGAAGGGGAAGAATCA+AGG + chr5_2:23501789-23501808 Msa0764080:CDS 45.0%
GAAGGAAGGGGAAGAATCAA+GGG + chr5_2:23501790-23501809 Msa0764080:CDS 45.0%
CTACCATTTGAGTGAAGCCT+TGG + chr5_2:23502367-23502386 Msa0764080:CDS 45.0%
AAGCCAAGGCTTCACTCAAA+TGG - chr5_2:23502373-23502392 None:intergenic 45.0%
! ATCTGGTAGTTTGGAACGCA+AGG - chr5_2:23502405-23502424 None:intergenic 45.0%
! CGTTCTGAATCCGTTCTTGT+TGG + chr5_2:23502449-23502468 Msa0764080:CDS 45.0%
TGAAGGAAAGGACGCTATTC+GGG + chr5_2:23502658-23502677 Msa0764080:CDS 45.0%
GGGAACAAGAAAGGTTTGGA+TGG + chr5_2:23502774-23502793 Msa0764080:CDS 45.0%
GAAAGGTTTGGATGGAATGC+TGG + chr5_2:23502782-23502801 Msa0764080:CDS 45.0%
TTTGGATGGAATGCTGGGAA+GGG + chr5_2:23502788-23502807 Msa0764080:CDS 45.0%
!! GGTGGATCTGAAAGAGCACT+AGG - chr5_2:23501549-23501568 None:intergenic 50.0%
CTTTCAGATCCACCACCATC+AGG + chr5_2:23501555-23501574 Msa0764080:CDS 50.0%
!! GAATTTGGACCTGATGGTGG+TGG - chr5_2:23501567-23501586 None:intergenic 50.0%
CCACCATCAGGTCCAAATTC+CGG + chr5_2:23501567-23501586 Msa0764080:CDS 50.0%
ACCACAAGGAATTCCATCCG+AGG - chr5_2:23502300-23502319 None:intergenic 50.0%
AGTTGACGCTCGAGCAAAGA+TGG + chr5_2:23502549-23502568 Msa0764080:CDS 50.0%
GTTGACGCTCGAGCAAAGAT+GGG + chr5_2:23502550-23502569 Msa0764080:CDS 50.0%
GTTTGGATGGAATGCTGGGA+AGG + chr5_2:23502787-23502806 Msa0764080:CDS 50.0%
!! GGTGGATCTGAAAGAGCACT+AGG - chr5_2:23501549-23501568 None:intergenic 50.0%
CTTTCAGATCCACCACCATC+AGG + chr5_2:23501555-23501574 Msa0764080:CDS 50.0%
!! GAATTTGGACCTGATGGTGG+TGG - chr5_2:23501567-23501586 None:intergenic 50.0%
CCACCATCAGGTCCAAATTC+CGG + chr5_2:23501567-23501586 Msa0764080:CDS 50.0%
ACCACAAGGAATTCCATCCG+AGG - chr5_2:23502300-23502319 None:intergenic 50.0%
AGTTGACGCTCGAGCAAAGA+TGG + chr5_2:23502549-23502568 Msa0764080:CDS 50.0%
GTTGACGCTCGAGCAAAGAT+GGG + chr5_2:23502550-23502569 Msa0764080:CDS 50.0%
GTTTGGATGGAATGCTGGGA+AGG + chr5_2:23502787-23502806 Msa0764080:CDS 50.0%
CCGGAATTTGGACCTGATGG+TGG - chr5_2:23501570-23501589 None:intergenic 55.0%
TCATGCCGAGTCAGTTGCCT+CGG + chr5_2:23502280-23502299 Msa0764080:CDS 55.0%
TCCATCCGAGGCAACTGACT+CGG - chr5_2:23502288-23502307 None:intergenic 55.0%
GCCTCGGATGGAATTCCTTG+TGG + chr5_2:23502296-23502315 Msa0764080:CDS 55.0%
CCGGAATTTGGACCTGATGG+TGG - chr5_2:23501570-23501589 None:intergenic 55.0%
TCATGCCGAGTCAGTTGCCT+CGG + chr5_2:23502280-23502299 Msa0764080:CDS 55.0%
TCCATCCGAGGCAACTGACT+CGG - chr5_2:23502288-23502307 None:intergenic 55.0%
GCCTCGGATGGAATTCCTTG+TGG + chr5_2:23502296-23502315 Msa0764080:CDS 55.0%
GCCGAGTCAGTTGCCTCGGA+TGG + chr5_2:23502284-23502303 Msa0764080:CDS 65.0%
GCCGAGTCAGTTGCCTCGGA+TGG + chr5_2:23502284-23502303 Msa0764080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 23501507 23502979 23501507 ID=Msa0764080;Name=Msa0764080
chr5_2 mRNA 23501507 23502979 23501507 ID=Msa0764080-mRNA-1;Parent=Msa0764080;Name=Msa0764080-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|380
chr5_2 exon 23501507 23501811 23501507 ID=Msa0764080-mRNA-1:exon:9710;Parent=Msa0764080-mRNA-1
chr5_2 exon 23502142 23502979 23502142 ID=Msa0764080-mRNA-1:exon:9711;Parent=Msa0764080-mRNA-1
chr5_2 CDS 23501507 23501811 23501507 ID=Msa0764080-mRNA-1:cds;Parent=Msa0764080-mRNA-1
chr5_2 CDS 23502142 23502979 23502142 ID=Msa0764080-mRNA-1:cds;Parent=Msa0764080-mRNA-1
Gene Sequence

>Msa0764080

ATGTATGCAGCAAGGCTCCTTTCCATGTACAAAAGGAACCCTAGTGCTCTTTCAGATCCACCACCATCAGGTCCAAATTCCGGTTATCTTGTAATATTGGATGAAGAAGCTCAAACTTACTCTTTCTTTGGTTTGTGGAAGGACATTGGTATTGGGAATCTTCCTTTCCCTCAGAACAAACATTTAACCATCAGTGATTTTGAAGGTATATACAAAAGAGAAAATGTCATGTTTCTTCCGGTATTGAATCAACCATTGTCTTCAAACCGTTATTATGTCATAAGAAGGAAGGGGAAGAATCAAGGCCAAGCAAACTTAAATTCAAAGGAAGAGGACATTAGCACTAGTGTATGCTGCCATTTTGGCCATGATATTAAAACAAGTCCCTTGGAGCCCTTCAATCATTATCAACAAATTGAAATAAGCAAGAAACGTTTTGGTTTTCATGCCGAGTCAGTTGCCTCGGATGGAATTCCTTGTGGTTTATTAAGGGAAAAAGTGTGGACAGTTTTTGCTACCACTCCTACAAACTACCATTTGAGTGAAGCCTTGGCTTCAAATGATTCCTTGCGTTCCAAACTACCAGATTTCAACTTTCCATTATCCAATGATCGTTCTGAATCCGTTCTTGTTGGAAAATGGTATTGTCCTTTTATGTTTGTGAAGGAAGGAATGACATTAAAGGAACAAATGGAAATATCAATGTTCTATGAGTTGACGCTCGAGCAAAGATGGGAGAAGATATTTACAAAAGAAAATGAAAACAGTGAAGAGAGTGATGTGTTAGTAGATGTTGTTATTCAAACAGAAGTTGCTAAGGTTGAAGGAAAGGACGCTATTCGGGATGAAAATAGATTGGTTGATGGAGTTTTGTGGTTTAAGAGTGTTGAAGATAAAAGTGTTGGATTGAGTTTGGAAGTTGTTGAGGGAATGAAATGGGAACAAGAAAGGTTTGGATGGAATGCTGGGAAGGGAAGACAGATGAAAGTAACAAAACTTGAAGAGTTTGGTGGAACAAACAAATGGAATAAATTTAGTTGTTATGTGTTGGTTGAAAGTTTTGTATTAAAGAGAATGGATAGAAAATTGTTGTTAACTTATGATTTCAGACTCTCACATCAAATTAGGAGTAAATGGGATTGA

Protein sequence

>Msa0764080

MYAARLLSMYKRNPSALSDPPPSGPNSGYLVILDEEAQTYSFFGLWKDIGIGNLPFPQNKHLTISDFEGIYKRENVMFLPVLNQPLSSNRYYVIRRKGKNQGQANLNSKEEDISTSVCCHFGHDIKTSPLEPFNHYQQIEISKKRFGFHAESVASDGIPCGLLREKVWTVFATTPTNYHLSEALASNDSLRSKLPDFNFPLSNDRSESVLVGKWYCPFMFVKEGMTLKEQMEISMFYELTLEQRWEKIFTKENENSEESDVLVDVVIQTEVAKVEGKDAIRDENRLVDGVLWFKSVEDKSVGLSLEVVEGMKWEQERFGWNAGKGRQMKVTKLEEFGGTNKWNKFSCYVLVESFVLKRMDRKLLLTYDFRLSHQIRSKWD*