Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0764320 | GAU28342.1 | 49.020 | 153 | 63 | 2 | 1 | 141 | 1 | 150 | 3.22e-31 | 128 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0764320 | A0A2Z6MTL0 | 49.020 | 153 | 63 | 2 | 1 | 141 | 1 | 150 | 1.54e-31 | 128 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0764310 | Msa0764320 | 0.901096 | 3.784096e-78 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0764320 | MtrunA17_Chr5g0446171 | 52.252 | 111 | 52 | 1 | 1 | 110 | 1 | 111 | 2.39e-30 | 109 |
Msa0764320 | MtrunA17_Chr5g0446231 | 55.446 | 101 | 40 | 1 | 22 | 117 | 1 | 101 | 3.39e-25 | 100 |
Msa0764320 | MtrunA17_Chr5g0413371 | 53.846 | 104 | 35 | 2 | 17 | 115 | 1 | 96 | 8.78e-23 | 93.2 |
Msa0764320 | MtrunA17_Chr5g0446191 | 54.167 | 96 | 39 | 1 | 27 | 117 | 21 | 116 | 2.14e-22 | 92.0 |
Msa0764320 | MtrunA17_Chr5g0445861 | 37.795 | 127 | 54 | 3 | 1 | 104 | 1 | 125 | 2.85e-14 | 68.6 |
Msa0764320 | MtrunA17_Chr5g0445771 | 35.556 | 135 | 67 | 3 | 3 | 117 | 1 | 135 | 3.27e-14 | 68.6 |
Msa0764320 | MtrunA17_Chr5g0445881 | 34.862 | 109 | 59 | 2 | 1 | 104 | 1 | 102 | 1.06e-12 | 64.3 |
Msa0764320 | MtrunA17_Chr5g0445831 | 35.537 | 121 | 65 | 3 | 1 | 115 | 1 | 114 | 1.34e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 18 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATACATATTGAGGAAGATT+TGG | 0.271417 | 5_2:-24171323 | Msa0764320:CDS |
TTGATGGAAGTTAAGAAAAC+TGG | 0.301409 | 5_2:-24171241 | Msa0764320:CDS |
CTTGGCAAACATGAACATTC+AGG | 0.332697 | 5_2:-24171485 | Msa0764320:CDS |
AAACATGAACATTCAGGGCT+TGG | 0.393321 | 5_2:-24171479 | Msa0764320:CDS |
CAAGACCCAGGTTCGGCATT+GGG | 0.396177 | 5_2:+24171526 | None:intergenic |
ATCGAACAGAACAGTTTGAT+AGG | 0.397165 | 5_2:-24171435 | Msa0764320:CDS |
TTTCAACCCAATGCCGAACC+TGG | 0.427131 | 5_2:-24171532 | Msa0764320:CDS |
AAGGATGCAGCAGAAGTGTC+AGG | 0.476417 | 5_2:-24171136 | Msa0764320:CDS |
GTAATATTGAGAGACTAGTT+AGG | 0.492814 | 5_2:-24171345 | Msa0764320:CDS |
ACAAGACCCAGGTTCGGCAT+TGG | 0.505024 | 5_2:+24171525 | None:intergenic |
ATTTGAACAAGACCCAGGTT+CGG | 0.511073 | 5_2:+24171519 | None:intergenic |
TTGGCAAACATGAACATTCA+GGG | 0.527661 | 5_2:-24171484 | Msa0764320:CDS |
TCGAACAGAACAGTTTGATA+GGG | 0.528018 | 5_2:-24171434 | Msa0764320:CDS |
TTCAAATGATGAAATGAACT+TGG | 0.534602 | 5_2:-24171503 | Msa0764320:CDS |
ACTAGTTAGGATACATATTG+AGG | 0.540629 | 5_2:-24171332 | Msa0764320:CDS |
TCATCATTTGAACAAGACCC+AGG | 0.561697 | 5_2:+24171514 | None:intergenic |
TTCAACCCAATGCCGAACCT+GGG | 0.592352 | 5_2:-24171531 | Msa0764320:CDS |
AGAGATGTAAAAGAGCAGAG+AGG | 0.730028 | 5_2:-24171279 | Msa0764320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TTCAAATGATGAAATGAACT+TGG | - | chr5_2:24171149-24171168 | Msa0764320:CDS | 25.0% |
! | GAATTACGAAAAATTGTTGA+TGG | - | chr5_2:24171395-24171414 | Msa0764320:CDS | 25.0% |
! | GTAATATTGAGAGACTAGTT+AGG | - | chr5_2:24171307-24171326 | Msa0764320:CDS | 30.0% |
ACTAGTTAGGATACATATTG+AGG | - | chr5_2:24171320-24171339 | Msa0764320:CDS | 30.0% | |
GATACATATTGAGGAAGATT+TGG | - | chr5_2:24171329-24171348 | Msa0764320:CDS | 30.0% | |
TTGATGGAAGTTAAGAAAAC+TGG | - | chr5_2:24171411-24171430 | Msa0764320:CDS | 30.0% | |
GAGCTGAAAAAGAAAGAAAA+CGG | - | chr5_2:24171444-24171463 | Msa0764320:CDS | 30.0% | |
AGCTGAAAAAGAAAGAAAAC+GGG | - | chr5_2:24171445-24171464 | Msa0764320:CDS | 30.0% | |
TTGGCAAACATGAACATTCA+GGG | - | chr5_2:24171168-24171187 | Msa0764320:CDS | 35.0% | |
ATCGAACAGAACAGTTTGAT+AGG | - | chr5_2:24171217-24171236 | Msa0764320:CDS | 35.0% | |
TCGAACAGAACAGTTTGATA+GGG | - | chr5_2:24171218-24171237 | Msa0764320:CDS | 35.0% | |
ATTTGAACAAGACCCAGGTT+CGG | + | chr5_2:24171136-24171155 | None:intergenic | 40.0% | |
TCATCATTTGAACAAGACCC+AGG | + | chr5_2:24171141-24171160 | None:intergenic | 40.0% | |
CTTGGCAAACATGAACATTC+AGG | - | chr5_2:24171167-24171186 | Msa0764320:CDS | 40.0% | |
AAACATGAACATTCAGGGCT+TGG | - | chr5_2:24171173-24171192 | Msa0764320:CDS | 40.0% | |
AGAGATGTAAAAGAGCAGAG+AGG | - | chr5_2:24171373-24171392 | Msa0764320:CDS | 40.0% | |
AAGATGAACCCCCCAACAAA+AGG | - | chr5_2:24171490-24171509 | Msa0764320:CDS | 45.0% | |
! | ATCCTTGCTCCTTTTGTTGG+GGG | + | chr5_2:24171502-24171521 | None:intergenic | 45.0% |
! | CATCCTTGCTCCTTTTGTTG+GGG | + | chr5_2:24171503-24171522 | None:intergenic | 45.0% |
! | GCATCCTTGCTCCTTTTGTT+GGG | + | chr5_2:24171504-24171523 | None:intergenic | 45.0% |
! | TGCATCCTTGCTCCTTTTGT+TGG | + | chr5_2:24171505-24171524 | None:intergenic | 45.0% |
TTTCAACCCAATGCCGAACC+TGG | - | chr5_2:24171120-24171139 | Msa0764320:CDS | 50.0% | |
TTCAACCCAATGCCGAACCT+GGG | - | chr5_2:24171121-24171140 | Msa0764320:CDS | 50.0% | |
TTGGGGGGTTCATCTTCATC+AGG | + | chr5_2:24171486-24171505 | None:intergenic | 50.0% | |
! | TCCTTGCTCCTTTTGTTGGG+GGG | + | chr5_2:24171501-24171520 | None:intergenic | 50.0% |
!! | AAGGATGCAGCAGAAGTGTC+AGG | - | chr5_2:24171516-24171535 | Msa0764320:CDS | 50.0% |
CAAGACCCAGGTTCGGCATT+GGG | + | chr5_2:24171129-24171148 | None:intergenic | 55.0% | |
ACAAGACCCAGGTTCGGCAT+TGG | + | chr5_2:24171130-24171149 | None:intergenic | 55.0% | |
ACCCCCCAACAAAAGGAGCA+AGG | - | chr5_2:24171497-24171516 | Msa0764320:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 24171114 | 24171560 | 24171114 | ID=Msa0764320;Name=Msa0764320 |
chr5_2 | mRNA | 24171114 | 24171560 | 24171114 | ID=Msa0764320-mRNA-1;Parent=Msa0764320;Name=Msa0764320-mRNA-1;_AED=0.70;_eAED=0.70;_QI=0|-1|0|1|-1|1|1|0|148 |
chr5_2 | exon | 24171114 | 24171560 | 24171114 | ID=Msa0764320-mRNA-1:exon:9884;Parent=Msa0764320-mRNA-1 |
chr5_2 | CDS | 24171114 | 24171560 | 24171114 | ID=Msa0764320-mRNA-1:cds;Parent=Msa0764320-mRNA-1 |
Gene Sequence |
Protein sequence |