AlfalfaGEDB | Msa0764460

M. sativa cultivar zhongmu-4 / Msa0764460

KEGG: K17969
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840
PFAM: PF14853.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0764460	XP_021282151.1	45.045	111	57	1	95	201	55	165	2.53e-19	92.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0764460	sp\|Q9M1J1\|FIS1A_ARATH	39.474	114	62	2	95	201	55	168	1.17e-16	77.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0764460	A0A6J1A5Y1	45.045	111	57	1	95	201	55	165	1.21e-19	92.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0584860	Msa0764460	0.819897	9.124152e-53	-8.615850e-47
Msa0764460	Msa0936300	0.803841	2.875493e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0764460	MtrunA17_Chr7g0256481	46.018	113	57	1	95	203	55	167	1.83e-22	90.1
Msa0764460	MtrunA17_Chr5g0442081	40.708	113	63	1	95	203	59	171	9.94e-19	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0764460	AT3G57090.2	39.474	114	62	2	95	201	55	168	1.18e-17	77.8
Msa0764460	AT3G57090.1	39.474	114	62	2	95	201	55	168	1.18e-17	77.8
Msa0764460	AT5G12390.1	36.607	112	66	2	95	202	57	167	1.36e-13	67.0

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Find 65 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATCCTAGGAGTAACT+TGG	0.590726	5_2:-24430398	Msa0764460:CDS
AAGAAAGAAGAGGTTAGAAT+TGG	0.334980	5_2:-24430948	Msa0764460:five_prime_UTR
AAGAACAAGTTTCTCGTCGA+TGG	0.541500	5_2:-24430868	Msa0764460:exon
AAGTTTCTCGTCGATGGCTA+TGG	0.492333	5_2:-24430862	Msa0764460:exon
ACCGCACTATCAGCTTGCTC+TGG	0.506640	5_2:-24430167	Msa0764460:CDS
ACTCCTCTTCAGTGGAAAAT+TGG	0.272815	5_2:-24428062	Msa0764460:CDS
ACTTTGAAGTGATAGGGCAG+TGG	0.645186	5_2:-24427575	Msa0764460:three_prime_UTR
AGAATCTGAAGAAGAAGGTT+TGG	0.418163	5_2:-24430710	Msa0764460:CDS
AGAGGTTAGAATTGGAATTT+TGG	0.260674	5_2:-24430940	Msa0764460:five_prime_UTR
AGCTTGCTCTGGCGTATTAC+AGG	0.267477	5_2:-24430156	Msa0764460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGAAGAGGTTAGAAT+TGG	-	chr5_2:24427483-24427502	Msa0764460:three_prime_UTR	30.0%
GAGAGTTTATCCTATTTACT+TGG	-	chr5_2:24427909-24427928	Msa0764460:intron	30.0%
CAACCCTTGAATTATTTGAA+TGG	+	chr5_2:24428102-24428121	None:intergenic	30.0%
GATTGAATGTAAGTACAGTA+TGG	-	chr5_2:24428141-24428160	Msa0764460:intron	30.0%
TGAGCAAATCAAAAGATGTT+TGG	-	chr5_2:24428321-24428340	Msa0764460:intron	30.0%
ATGCTCCATCATATAATATC+TGG	+	chr5_2:24428777-24428796	None:intergenic	30.0%
AATAGAAACCGAAAGATCAT+GGG	-	chr5_2:24429165-24429184	Msa0764460:intron	30.0%
TTATAAAAGAAATGAGCTGG+TGG	-	chr5_2:24429231-24429250	Msa0764460:intron	30.0%
ATTAAACCTTGACACATTCT+CGG	-	chr5_2:24429259-24429278	Msa0764460:intron	30.0%
AGAAATTCATCCATCTTCAA+TGG	-	chr5_2:24429685-24429704	Msa0764460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	24427469	24430984	24427469	ID=Msa0764460;Name=Msa0764460
chr5_2	mRNA	24427469	24430984	24427469	ID=Msa0764460-mRNA-1;Parent=Msa0764460;Name=Msa0764460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113\|1\|1\|1\|1\|1\|5\|266\|235
chr5_2	exon	24427469	24427916	24427469	ID=Msa0764460-mRNA-1:exon:9974;Parent=Msa0764460-mRNA-1
chr5_2	exon	24428044	24428107	24428044	ID=Msa0764460-mRNA-1:exon:9973;Parent=Msa0764460-mRNA-1
chr5_2	exon	24430108	24430217	24430108	ID=Msa0764460-mRNA-1:exon:9972;Parent=Msa0764460-mRNA-1
chr5_2	exon	24430305	24430437	24430305	ID=Msa0764460-mRNA-1:exon:9971;Parent=Msa0764460-mRNA-1
chr5_2	exon	24430653	24430984	24430653	ID=Msa0764460-mRNA-1:exon:9970;Parent=Msa0764460-mRNA-1
chr5_2	five_prime_UTR	24430872	24430984	24430872	ID=Msa0764460-mRNA-1:five_prime_utr;Parent=Msa0764460-mRNA-1
chr5_2	CDS	24430653	24430871	24430653	ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1
chr5_2	CDS	24430305	24430437	24430305	ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1
chr5_2	CDS	24430108	24430217	24430108	ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1
chr5_2	CDS	24428044	24428107	24428044	ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1
chr5_2	CDS	24427735	24427916	24427735	ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1
chr5_2	three_prime_UTR	24427469	24427734	24427469	ID=Msa0764460-mRNA-1:three_prime_utr;Parent=Msa0764460-mRNA-1

Gene Sequence

>Msa0764460

ATGGCTATGGAGATTCTGGATAAGTTCTCGGACAAATTATCTATAATAAGTATGTTGATGGCTAGTGCTGCTATTGAGAATCTGGATAAGTTCTCGTACAAGGTCTCTCGAACAATGCCGATGGCTGAAGCTGTTTATAAGAATCTGAAGAAGAAGGTTTGGAACAAGTTCTTTCGATTAGATCTACCAGATCTAACTAAGAGTGATGAATTATTTGCTCTCCTTTATGGAGAAGCAAACGATCCTAGGAGTAACTTGGTGTTTTCTAGGAGGCCCTCTAGGAGGTTCTCATTCGATCTTCTCCATTCAAATAATTCAAGGGTTGTAAAAAATGAGATTGCGTCGATTGAATCTTCTCTTCGCATCGCAAGAGTGCCTTTACCGCACTATCAGCTTGCTCTGGCGTATTACAGGATTGGCGATTATGCCAAGAGCCGTGAGCAAATCAAAAGATGTTTGGAGTTTGCACCTGATAACGATTTGGCACTCCTCTTCAGTGGAAAATTGGAATATGAAATTTTACAATATGGTGTGAAAGGAATTGGTATGACGGCACTAGCTGCAGGGTTCGTTGTCGGTAGCATTGCTGCAGCATGGGCCAGAACAAACAACGGATTTGTGTTTTGGATTAATGGAATTTTTGGTTGGAGAAGAGAGAATTTTATTGGAACATATTCTATTCTAGTTGGTGATTATGTAGGTGATTAG

Protein sequence

>Msa0764460

MAMEILDKFSDKLSIISMLMASAAIENLDKFSYKVSRTMPMAEAVYKNLKKKVWNKFFRLDLPDLTKSDELFALLYGEANDPRSNLVFSRRPSRRFSFDLLHSNNSRVVKNEIASIESSLRIARVPLPHYQLALAYYRIGDYAKSREQIKRCLEFAPDNDLALLFSGKLEYEILQYGVKGIGMTALAAGFVVGSIAAAWARTNNGFVFWINGIFGWRRENFIGTYSILVGDYVGD*