Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764460 | XP_021282151.1 | 45.045 | 111 | 57 | 1 | 95 | 201 | 55 | 165 | 2.53e-19 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764460 | sp|Q9M1J1|FIS1A_ARATH | 39.474 | 114 | 62 | 2 | 95 | 201 | 55 | 168 | 1.17e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764460 | A0A6J1A5Y1 | 45.045 | 111 | 57 | 1 | 95 | 201 | 55 | 165 | 1.21e-19 | 92.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0764460 | Msa0936300 | 0.803841 | 2.875493e-49 | -8.615850e-47 |
| Msa0584860 | Msa0764460 | 0.819897 | 9.124152e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764460 | MtrunA17_Chr7g0256481 | 46.018 | 113 | 57 | 1 | 95 | 203 | 55 | 167 | 1.83e-22 | 90.1 |
| Msa0764460 | MtrunA17_Chr5g0442081 | 40.708 | 113 | 63 | 1 | 95 | 203 | 59 | 171 | 9.94e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764460 | AT3G57090.2 | 39.474 | 114 | 62 | 2 | 95 | 201 | 55 | 168 | 1.18e-17 | 77.8 |
| Msa0764460 | AT3G57090.1 | 39.474 | 114 | 62 | 2 | 95 | 201 | 55 | 168 | 1.18e-17 | 77.8 |
| Msa0764460 | AT5G12390.1 | 36.607 | 112 | 66 | 2 | 95 | 202 | 57 | 167 | 1.36e-13 | 67.0 |
Find 65 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAACGGATTTGTGTTT+TGG | 0.202678 | 5_2:-24427816 | Msa0764460:CDS |
| CACAAATCCGTTGTTTGTTC+TGG | 0.241563 | 5_2:+24427822 | None:intergenic |
| AGAGGTTAGAATTGGAATTT+TGG | 0.260674 | 5_2:-24430940 | Msa0764460:five_prime_UTR |
| AGCTTGCTCTGGCGTATTAC+AGG | 0.267477 | 5_2:-24430156 | Msa0764460:CDS |
| ACTCCTCTTCAGTGGAAAAT+TGG | 0.272815 | 5_2:-24428062 | Msa0764460:CDS |
| TTCTTGTTTCTATTTGTCTT+GGG | 0.273116 | 5_2:-24427605 | Msa0764460:three_prime_UTR |
| TTGAATTTCATATATTAGTT+TGG | 0.288156 | 5_2:-24427508 | Msa0764460:three_prime_UTR |
| GTCGATGGCTATGGAGATTC+TGG | 0.311257 | 5_2:-24430853 | Msa0764460:exon |
| ATTCTTGTTTCTATTTGTCT+TGG | 0.322177 | 5_2:-24427606 | Msa0764460:three_prime_UTR |
| AAGAAAGAAGAGGTTAGAAT+TGG | 0.334980 | 5_2:-24430948 | Msa0764460:five_prime_UTR |
| GGGTACTCTTGGTCTCTTAT+CGG | 0.369617 | 5_2:-24427554 | Msa0764460:three_prime_UTR |
| ATCTATAATAAGTATGTTGA+TGG | 0.375241 | 5_2:-24430811 | Msa0764460:CDS |
| GTTTGCACCTGATAACGATT+TGG | 0.395357 | 5_2:-24428086 | Msa0764460:CDS |
| TTTGATTTGCTCACGGCTCT+TGG | 0.399260 | 5_2:+24430120 | None:intergenic |
| TTCTCCATTCAAATAATTCA+AGG | 0.399499 | 5_2:-24430336 | Msa0764460:CDS |
| TGAGCAAATCAAAAGATGTT+TGG | 0.402094 | 5_2:-24430110 | Msa0764460:CDS |
| GGAACATATTCTATTCTAGT+TGG | 0.405333 | 5_2:-24427754 | Msa0764460:CDS |
| GATCGTTTGCTTCTCCATAA+AGG | 0.408865 | 5_2:+24430413 | None:intergenic |
| AGGAGTGCCAAATCGTTATC+AGG | 0.415592 | 5_2:+24428079 | None:intergenic |
| AGAATCTGAAGAAGAAGGTT+TGG | 0.418163 | 5_2:-24430710 | Msa0764460:CDS |
| TAGTGCTGCTATTGAGAATC+TGG | 0.423851 | 5_2:-24430787 | Msa0764460:CDS |
| AGGTGATTAGCTGAATTAAT+TGG | 0.426089 | 5_2:-24427722 | Msa0764460:exon |
| ATTCTAGTTGGTGATTATGT+AGG | 0.430007 | 5_2:-24427742 | Msa0764460:CDS |
| TCATCACTCTTAGTTAGATC+TGG | 0.434845 | 5_2:+24430663 | None:intergenic |
| CAACCCTTGAATTATTTGAA+TGG | 0.437607 | 5_2:+24430332 | None:intergenic |
| GGAGATTCTGGATAAGTTCT+CGG | 0.445317 | 5_2:-24430841 | Msa0764460:CDS |
| TTATAAGAATCTGAAGAAGA+AGG | 0.461898 | 5_2:-24430715 | Msa0764460:CDS |
| CGGTAGCATTGCTGCAGCAT+GGG | 0.471244 | 5_2:-24427845 | Msa0764460:CDS |
| TCGGTAGCATTGCTGCAGCA+TGG | 0.471721 | 5_2:-24427846 | Msa0764460:CDS |
| GGTATGACGGCACTAGCTGC+AGG | 0.473188 | 5_2:-24427877 | Msa0764460:CDS |
| GCAAGCTGATAGTGCGGTAA+AGG | 0.483079 | 5_2:+24430172 | None:intergenic |
| ATGGAGAAGCAAACGATCCT+AGG | 0.486580 | 5_2:-24430408 | Msa0764460:CDS |
| GCAAATCAAAAGATGTTTGG+AGG | 0.487390 | 5_2:-24430107 | Msa0764460:intron |
| TCGGTCTATTTCTTGCAACT+TGG | 0.487404 | 5_2:-24427535 | Msa0764460:three_prime_UTR |
| AAGTTTCTCGTCGATGGCTA+TGG | 0.492333 | 5_2:-24430862 | Msa0764460:exon |
| GAGTGTGACTTTGAAGTGAT+AGG | 0.492570 | 5_2:-24427582 | Msa0764460:three_prime_UTR |
| GCAGATGGTGTGAAAGGAAT+TGG | 0.493598 | 5_2:-24427898 | Msa0764460:intron |
| GATAGGGCAGTGGGTACTCT+TGG | 0.496556 | 5_2:-24427565 | Msa0764460:three_prime_UTR |
| TCTTGTTTCTATTTGTCTTG+GGG | 0.497357 | 5_2:-24427604 | Msa0764460:three_prime_UTR |
| CATATATTAGTTTGGACAAG+AGG | 0.500202 | 5_2:-24427500 | Msa0764460:three_prime_UTR |
| CTAGCTGCAGGGTTCGTTGT+CGG | 0.500395 | 5_2:-24427865 | Msa0764460:CDS |
| ACCGCACTATCAGCTTGCTC+TGG | 0.506640 | 5_2:-24430167 | Msa0764460:CDS |
| GCTCTGGCGTATTACAGGAT+TGG | 0.508658 | 5_2:-24430151 | Msa0764460:CDS |
| TTATAAACAGCTTCAGCCAT+CGG | 0.527583 | 5_2:+24430732 | None:intergenic |
| TGATTAGCTGAATTAATTGG+TGG | 0.532379 | 5_2:-24427719 | Msa0764460:exon |
| GAAAACACCAAGTTACTCCT+AGG | 0.537704 | 5_2:+24430391 | None:intergenic |
| TCTCCATTCAAATAATTCAA+GGG | 0.539435 | 5_2:-24430335 | Msa0764460:CDS |
| AAGAACAAGTTTCTCGTCGA+TGG | 0.541500 | 5_2:-24430868 | Msa0764460:exon |
| TCTGGATAAGTTCTCGTACA+AGG | 0.547723 | 5_2:-24430769 | Msa0764460:CDS |
| AGTGTGACTTTGAAGTGATA+GGG | 0.557256 | 5_2:-24427581 | Msa0764460:three_prime_UTR |
| CTTTGAAGTGATAGGGCAGT+GGG | 0.587043 | 5_2:-24427574 | Msa0764460:three_prime_UTR |
| GATTTGGCACTCCTCTTCAG+TGG | 0.588997 | 5_2:-24428070 | Msa0764460:CDS |
| AAACGATCCTAGGAGTAACT+TGG | 0.590726 | 5_2:-24430398 | Msa0764460:CDS |
| TTTCTAGGAGGCCCTCTAGG+AGG | 0.618849 | 5_2:-24430372 | Msa0764460:CDS |
| TCGAATGAGAACCTCCTAGA+GGG | 0.622493 | 5_2:+24430361 | None:intergenic |
| GTATGACGGCACTAGCTGCA+GGG | 0.633288 | 5_2:-24427876 | Msa0764460:CDS |
| GGTCTCTCGAACAATGCCGA+TGG | 0.634313 | 5_2:-24430748 | Msa0764460:CDS |
| ATGGACACATAAGAAAGAAG+AGG | 0.641110 | 5_2:-24430958 | Msa0764460:five_prime_UTR |
| CGACGAGAAACTTGTTCTTG+CGG | 0.643993 | 5_2:+24430872 | None:intergenic |
| ACTTTGAAGTGATAGGGCAG+TGG | 0.645186 | 5_2:-24427575 | Msa0764460:three_prime_UTR |
| ATCGATGCAGATGGTGTGAA+AGG | 0.647151 | 5_2:-24427904 | Msa0764460:intron |
| GCCAGAGCAAGCTGATAGTG+CGG | 0.674207 | 5_2:+24430166 | None:intergenic |
| GCATGGGCCAGAACAAACAA+CGG | 0.688107 | 5_2:-24427829 | Msa0764460:CDS |
| ATCGAATGAGAACCTCCTAG+AGG | 0.694799 | 5_2:+24430360 | None:intergenic |
| TGTGAAAGGAATTGGTATGA+CGG | 0.731906 | 5_2:-24427890 | Msa0764460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATCAGTAATTTAA+AGG | - | chr5_2:24428578-24428597 | Msa0764460:intron | 10.0% |
| !! | TTAAATATCAGTAATTTAAA+GGG | - | chr5_2:24428579-24428598 | Msa0764460:intron | 10.0% |
| !!! | ATATTCTATTATATTTTGTA+TGG | - | chr5_2:24430792-24430811 | Msa0764460:CDS | 10.0% |
| !!! | AGGGTTTTTTTTTTTTTTTT+TGG | - | chr5_2:24427882-24427901 | Msa0764460:CDS | 15.0% |
| !!! | GGGTTTTTTTTTTTTTTTTT+GGG | - | chr5_2:24427883-24427902 | Msa0764460:CDS | 15.0% |
| !! | ATTTATAATTTCTAACTAGT+TGG | + | chr5_2:24428671-24428690 | None:intergenic | 15.0% |
| !! | AAACAACATAATGAAAATAT+CGG | - | chr5_2:24429412-24429431 | Msa0764460:intron | 15.0% |
| !!! | AGTAATAATTTTGACTTTTA+GGG | - | chr5_2:24429948-24429967 | Msa0764460:intron | 15.0% |
| !! | TCAATGACAATATATAATAT+TGG | + | chr5_2:24430061-24430080 | None:intergenic | 15.0% |
| !!! | TTTTCCTTTAAATATCATTT+TGG | + | chr5_2:24430246-24430265 | None:intergenic | 15.0% |
| !!! | ATTAATTTGTTACAATTTAG+TGG | - | chr5_2:24430305-24430324 | Msa0764460:CDS | 15.0% |
| !! | TTAAATTGAGAATGAAAAAA+TGG | - | chr5_2:24430763-24430782 | Msa0764460:CDS | 15.0% |
| !! | TAAATTGAGAATGAAAAAAT+GGG | - | chr5_2:24430764-24430783 | Msa0764460:CDS | 15.0% |
| !! | TTGAATTTCATATATTAGTT+TGG | - | chr5_2:24430923-24430942 | Msa0764460:five_prime_UTR | 15.0% |
| !! | ATCTATAATAAGTATGTTGA+TGG | - | chr5_2:24427620-24427639 | Msa0764460:three_prime_UTR | 20.0% |
| !!! | TTTCTCTATTTCTTTTAATC+TGG | - | chr5_2:24427970-24427989 | Msa0764460:intron | 20.0% |
| !! | TTCATAATTAAGAATTGACA+GGG | + | chr5_2:24428210-24428229 | None:intergenic | 20.0% |
| !! | ATTCATAATTAAGAATTGAC+AGG | + | chr5_2:24428211-24428230 | None:intergenic | 20.0% |
| !! | CTATCTATATATAAATGAGA+AGG | + | chr5_2:24428362-24428381 | None:intergenic | 20.0% |
| !! | TATAGCAGTTACTAAAATTA+TGG | - | chr5_2:24429127-24429146 | Msa0764460:intron | 20.0% |
| !! | ATTCAAAAAGAGATGTTAAT+TGG | + | chr5_2:24429632-24429651 | None:intergenic | 20.0% |
| !! | TAAAAGATCTATTATGCATT+TGG | - | chr5_2:24429817-24429836 | Msa0764460:intron | 20.0% |
| !!! | GAGTAATAATTTTGACTTTT+AGG | - | chr5_2:24429947-24429966 | Msa0764460:intron | 20.0% |
| !! | ATCATCATATCTTTAACAAA+TGG | - | chr5_2:24430497-24430516 | Msa0764460:intron | 20.0% |
| !!! | TTTTGGATTAATGGAATTTT+TGG | - | chr5_2:24430632-24430651 | Msa0764460:intron | 20.0% |
| ! | TTATAAGAATCTGAAGAAGA+AGG | - | chr5_2:24427716-24427735 | Msa0764460:exon | 25.0% |
| !!! | TCATTTGGTAGTTTGATTTT+AGG | - | chr5_2:24427862-24427881 | Msa0764460:CDS | 25.0% |
| !!! | CATTTGGTAGTTTGATTTTA+GGG | - | chr5_2:24427863-24427882 | Msa0764460:CDS | 25.0% |
| ! | TTCTCCATTCAAATAATTCA+AGG | - | chr5_2:24428095-24428114 | Msa0764460:intron | 25.0% |
| ! | TCTCCATTCAAATAATTCAA+GGG | - | chr5_2:24428096-24428115 | Msa0764460:intron | 25.0% |
| ! | AGTTAACATCAAACTGTTAA+GGG | + | chr5_2:24428185-24428204 | None:intergenic | 25.0% |
| ! | TAGTTAACATCAAACTGTTA+AGG | + | chr5_2:24428186-24428205 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTTTGAAATACAG+AGG | + | chr5_2:24428435-24428454 | None:intergenic | 25.0% |
| ! | TCTGTATTTCAAAACCTAAA+AGG | - | chr5_2:24428434-24428453 | Msa0764460:intron | 25.0% |
| !! | GATATTTAATTTACTCCTGT+GGG | + | chr5_2:24428568-24428587 | None:intergenic | 25.0% |
| !! | TGATATTTAATTTACTCCTG+TGG | + | chr5_2:24428569-24428588 | None:intergenic | 25.0% |
| !!! | AGTTGGTTTTATATGAACAA+GGG | + | chr5_2:24428654-24428673 | None:intergenic | 25.0% |
| !!! | TAGTTGGTTTTATATGAACA+AGG | + | chr5_2:24428655-24428674 | None:intergenic | 25.0% |
| ! | AATTAAACACAGAAGCAATT+TGG | - | chr5_2:24428723-24428742 | Msa0764460:intron | 25.0% |
| ! | TTCTTCCAGATATTATATGA+TGG | - | chr5_2:24428769-24428788 | Msa0764460:intron | 25.0% |
| !! | TTTTGGTATTTTCTCAAACT+TGG | + | chr5_2:24428858-24428877 | None:intergenic | 25.0% |
| ! | GAAAATACCAAAAATGTTTC+AGG | - | chr5_2:24428865-24428884 | Msa0764460:intron | 25.0% |
| !! | TTGTTTTCCTGAAACATTTT+TGG | + | chr5_2:24428875-24428894 | None:intergenic | 25.0% |
| !! | TAACATTTTACATAGTTCAC+AGG | - | chr5_2:24429044-24429063 | Msa0764460:intron | 25.0% |
| ! | CTAAAATTATGGTTATCGAT+CGG | - | chr5_2:24429138-24429157 | Msa0764460:intron | 25.0% |
| !! | CAGTTAATCTACAAGATTTT+TGG | - | chr5_2:24429201-24429220 | Msa0764460:intron | 25.0% |
| ! | GTATTATAAAAGAAATGAGC+TGG | - | chr5_2:24429228-24429247 | Msa0764460:intron | 25.0% |
| !! | AGTGTTGAATGAGAATAATT+AGG | + | chr5_2:24429297-24429316 | None:intergenic | 25.0% |
| !!! | TATGTTGTTTTTACAATCTG+TGG | + | chr5_2:24429402-24429421 | None:intergenic | 25.0% |
| !!! | AATAATTTTGACTTTTAGGG+AGG | - | chr5_2:24429951-24429970 | Msa0764460:intron | 25.0% |
| ! | TGTCTGATATATACTGAAAT+AGG | - | chr5_2:24430088-24430107 | Msa0764460:intron | 25.0% |
| ! | AATACTGTATAACTGAGTAT+CGG | + | chr5_2:24430123-24430142 | None:intergenic | 25.0% |
| ! | ACCTCCAAAATGATATTTAA+AGG | - | chr5_2:24430239-24430258 | Msa0764460:intron | 25.0% |
| !! | TCCTTTAAATATCATTTTGG+AGG | + | chr5_2:24430243-24430262 | None:intergenic | 25.0% |
| ! | GCAAGTTATACTTCAAAATT+CGG | + | chr5_2:24430455-24430474 | None:intergenic | 25.0% |
| !! | ATTATATTTTGTATGGCTGT+TGG | - | chr5_2:24430799-24430818 | Msa0764460:CDS | 25.0% |
| !! | TTATATTTTGTATGGCTGTT+GGG | - | chr5_2:24430800-24430819 | Msa0764460:CDS | 25.0% |
| !!! | ATTCTTGTTTCTATTTGTCT+TGG | - | chr5_2:24430825-24430844 | Msa0764460:CDS | 25.0% |
| !!! | TTCTTGTTTCTATTTGTCTT+GGG | - | chr5_2:24430826-24430845 | Msa0764460:CDS | 25.0% |
| AAGAAAGAAGAGGTTAGAAT+TGG | - | chr5_2:24427483-24427502 | Msa0764460:three_prime_UTR | 30.0% | |
| ! | AGAGGTTAGAATTGGAATTT+TGG | - | chr5_2:24427491-24427510 | Msa0764460:three_prime_UTR | 30.0% |
| GAGAGTTTATCCTATTTACT+TGG | - | chr5_2:24427909-24427928 | Msa0764460:intron | 30.0% | |
| !!! | TTTTTTGTGAAGCTCCTTTA+TGG | - | chr5_2:24428004-24428023 | Msa0764460:intron | 30.0% |
| CAACCCTTGAATTATTTGAA+TGG | + | chr5_2:24428102-24428121 | None:intergenic | 30.0% | |
| GATTGAATGTAAGTACAGTA+TGG | - | chr5_2:24428141-24428160 | Msa0764460:intron | 30.0% | |
| !!! | AACATCTTTTGATTTGCTCA+CGG | + | chr5_2:24428321-24428340 | None:intergenic | 30.0% |
| TGAGCAAATCAAAAGATGTT+TGG | - | chr5_2:24428321-24428340 | Msa0764460:intron | 30.0% | |
| !!! | AGGTTTTGAAAGATTAAGGT+TGG | + | chr5_2:24428415-24428434 | None:intergenic | 30.0% |
| !!! | ACAGAGGTTTTGAAAGATTA+AGG | + | chr5_2:24428419-24428438 | None:intergenic | 30.0% |
| ! | AATTCTTTGCAATAGCTCTA+AGG | + | chr5_2:24428605-24428624 | None:intergenic | 30.0% |
| ATGCTCCATCATATAATATC+TGG | + | chr5_2:24428777-24428796 | None:intergenic | 30.0% | |
| ! | TTGCAGTTTTCAGTTTAGAA+TGG | + | chr5_2:24428829-24428848 | None:intergenic | 30.0% |
| !! | AAATCTGCTGCTTGTAATTT+TGG | + | chr5_2:24429010-24429029 | None:intergenic | 30.0% |
| AATAGAAACCGAAAGATCAT+GGG | - | chr5_2:24429165-24429184 | Msa0764460:intron | 30.0% | |
| TTATAAAAGAAATGAGCTGG+TGG | - | chr5_2:24429231-24429250 | Msa0764460:intron | 30.0% | |
| ATTAAACCTTGACACATTCT+CGG | - | chr5_2:24429259-24429278 | Msa0764460:intron | 30.0% | |
| !!! | CTGTTGTTTTGAAAATTCAG+TGG | - | chr5_2:24429444-24429463 | Msa0764460:intron | 30.0% |
| AGAAATTCATCCATCTTCAA+TGG | - | chr5_2:24429685-24429704 | Msa0764460:intron | 30.0% | |
| ! | CTCTTTGTTTAGTGATTCAA+CGG | - | chr5_2:24429749-24429768 | Msa0764460:intron | 30.0% |
| ! | TCTTTGTTTAGTGATTCAAC+GGG | - | chr5_2:24429750-24429769 | Msa0764460:intron | 30.0% |
| TATGCACTTCAATATGTTTG+TGG | - | chr5_2:24430000-24430019 | Msa0764460:intron | 30.0% | |
| ATCTTTCTCACCTAATCTTT+AGG | - | chr5_2:24430159-24430178 | Msa0764460:CDS | 30.0% | |
| ATAGATCAGGTGGTATTTAT+TGG | + | chr5_2:24430212-24430231 | None:intergenic | 30.0% | |
| ACTTCTATGTTCATGCTAAT+AGG | + | chr5_2:24430279-24430298 | None:intergenic | 30.0% | |
| !! | GGATTTGTGTTTTGGATTAA+TGG | - | chr5_2:24430623-24430642 | Msa0764460:intron | 30.0% |
| !!! | GGATTAATGGAATTTTTGGT+TGG | - | chr5_2:24430636-24430655 | Msa0764460:intron | 30.0% |
| ! | TGGAGAAGAGAGAATTTTAT+TGG | - | chr5_2:24430656-24430675 | Msa0764460:CDS | 30.0% |
| GGAACATATTCTATTCTAGT+TGG | - | chr5_2:24430677-24430696 | Msa0764460:CDS | 30.0% | |
| !! | ATTCTAGTTGGTGATTATGT+AGG | - | chr5_2:24430689-24430708 | Msa0764460:CDS | 30.0% |
| ! | AGGTGATTAGCTGAATTAAT+TGG | - | chr5_2:24430709-24430728 | Msa0764460:CDS | 30.0% |
| ! | TGATTAGCTGAATTAATTGG+TGG | - | chr5_2:24430712-24430731 | Msa0764460:CDS | 30.0% |
| !! | CTGAATTAATTGGTGGTTTT+TGG | - | chr5_2:24430719-24430738 | Msa0764460:CDS | 30.0% |
| TTGAGAATGAAAAAATGGGT+TGG | - | chr5_2:24430768-24430787 | Msa0764460:CDS | 30.0% | |
| ! | TATATTTTGTATGGCTGTTG+GGG | - | chr5_2:24430801-24430820 | Msa0764460:CDS | 30.0% |
| !! | TCTTGTTTCTATTTGTCTTG+GGG | - | chr5_2:24430827-24430846 | Msa0764460:CDS | 30.0% |
| ! | CATATATTAGTTTGGACAAG+AGG | - | chr5_2:24430931-24430950 | Msa0764460:five_prime_UTR | 30.0% |
| ATGGACACATAAGAAAGAAG+AGG | - | chr5_2:24427473-24427492 | Msa0764460:three_prime_UTR | 35.0% | |
| TTATAAACAGCTTCAGCCAT+CGG | + | chr5_2:24427702-24427721 | None:intergenic | 35.0% | |
| AGAATCTGAAGAAGAAGGTT+TGG | - | chr5_2:24427721-24427740 | Msa0764460:exon | 35.0% | |
| TCATCACTCTTAGTTAGATC+TGG | + | chr5_2:24427771-24427790 | None:intergenic | 35.0% | |
| TACCAAATGAAACGAATGAG+AGG | + | chr5_2:24427852-24427871 | None:intergenic | 35.0% | |
| ! | CTAAGGTGTTCCAAGTAAAT+AGG | + | chr5_2:24427922-24427941 | None:intergenic | 35.0% |
| GCAAATCAAAAGATGTTTGG+AGG | - | chr5_2:24428324-24428343 | Msa0764460:intron | 35.0% | |
| !!! | AGCCTGTATCTTTGTTTTTC+TGG | - | chr5_2:24428387-24428406 | Msa0764460:intron | 35.0% |
| CACCAGAAAAACAAAGATAC+AGG | + | chr5_2:24428392-24428411 | None:intergenic | 35.0% | |
| TAGCCTCATATTACGTAAGT+GGG | + | chr5_2:24428465-24428484 | None:intergenic | 35.0% | |
| ATAGCCTCATATTACGTAAG+TGG | + | chr5_2:24428466-24428485 | None:intergenic | 35.0% | |
| CTTACGTAATATGAGGCTAT+TGG | - | chr5_2:24428466-24428485 | Msa0764460:intron | 35.0% | |
| AACGTCATAGCTTACTGAAA+CGG | + | chr5_2:24428532-24428551 | None:intergenic | 35.0% | |
| AAGTGCAAAATGTTCACGTT+TGG | - | chr5_2:24428972-24428991 | Msa0764460:intron | 35.0% | |
| AATGTTCACGTTTGGTATCT+TGG | - | chr5_2:24428980-24428999 | Msa0764460:intron | 35.0% | |
| ! | TACATAGTTCACAGGTTTTG+TGG | - | chr5_2:24429052-24429071 | Msa0764460:intron | 35.0% |
| !! | ACATAGTTCACAGGTTTTGT+GGG | - | chr5_2:24429053-24429072 | Msa0764460:intron | 35.0% |
| GAATAGAAACCGAAAGATCA+TGG | - | chr5_2:24429164-24429183 | Msa0764460:intron | 35.0% | |
| ATAAAACCGAGAATGTGTCA+AGG | + | chr5_2:24429268-24429287 | None:intergenic | 35.0% | |
| TTTGAAAATTCAGTGGAGAG+TGG | - | chr5_2:24429451-24429470 | Msa0764460:intron | 35.0% | |
| !! | TGGATAGCTCTAAAGAATGT+TGG | + | chr5_2:24429589-24429608 | None:intergenic | 35.0% |
| ! | AATTGGAGTGTTAGAACCAT+GGG | + | chr5_2:24429615-24429634 | None:intergenic | 35.0% |
| ! | TAATTGGAGTGTTAGAACCA+TGG | + | chr5_2:24429616-24429635 | None:intergenic | 35.0% |
| ! | CTCTTTTTGAATGCTTCTCT+TGG | - | chr5_2:24429640-24429659 | Msa0764460:intron | 35.0% |
| !! | ATCCATCTTCAATGGATTGT+TGG | - | chr5_2:24429693-24429712 | Msa0764460:intron | 35.0% |
| !! | TCAATGGATTGTTGGCAATT+TGG | - | chr5_2:24429701-24429720 | Msa0764460:intron | 35.0% |
| TCTTCCTTGAAACAACAAGA+GGG | - | chr5_2:24429850-24429869 | Msa0764460:intron | 35.0% | |
| !!! | CTTGTTTTGTTTGATGCTTG+AGG | + | chr5_2:24429877-24429896 | None:intergenic | 35.0% |
| ATTCTTCCAGAGATGCAAAA+AGG | - | chr5_2:24429925-24429944 | Msa0764460:intron | 35.0% | |
| ! | ATTACTCCTTTTTGCATCTC+TGG | + | chr5_2:24429934-24429953 | None:intergenic | 35.0% |
| TCACCTAATCTTTAGGCATA+TGG | - | chr5_2:24430166-24430185 | Msa0764460:CDS | 35.0% | |
| ACACCATATGCCTAAAGATT+AGG | + | chr5_2:24430172-24430191 | None:intergenic | 35.0% | |
| ! | ATTCCAATTTTCCACTGAAG+AGG | + | chr5_2:24430375-24430394 | None:intergenic | 35.0% |
| TGTGAAAGGAATTGGTATGA+CGG | - | chr5_2:24430541-24430560 | Msa0764460:intron | 35.0% | |
| !! | CAAACAACGGATTTGTGTTT+TGG | - | chr5_2:24430615-24430634 | Msa0764460:intron | 35.0% |
| !!! | TGGTTTTTGGTGTACATGTT+TGG | - | chr5_2:24430732-24430751 | Msa0764460:CDS | 35.0% |
| !! | TTTTGGTGTACATGTTTGGA+TGG | - | chr5_2:24430736-24430755 | Msa0764460:CDS | 35.0% |
| ! | ATATTTTGTATGGCTGTTGG+GGG | - | chr5_2:24430802-24430821 | Msa0764460:CDS | 35.0% |
| !! | AGTGTGACTTTGAAGTGATA+GGG | - | chr5_2:24430850-24430869 | Msa0764460:CDS | 35.0% |
| AAGAACAAGTTTCTCGTCGA+TGG | - | chr5_2:24427563-24427582 | Msa0764460:three_prime_UTR | 40.0% | |
| GGAGATTCTGGATAAGTTCT+CGG | - | chr5_2:24427590-24427609 | Msa0764460:three_prime_UTR | 40.0% | |
| ! | TAGTGCTGCTATTGAGAATC+TGG | - | chr5_2:24427644-24427663 | Msa0764460:three_prime_UTR | 40.0% |
| TCTGGATAAGTTCTCGTACA+AGG | - | chr5_2:24427662-24427681 | Msa0764460:three_prime_UTR | 40.0% | |
| GAAATCTGTGTGTATGTGTG+TGG | + | chr5_2:24427828-24427847 | None:intergenic | 40.0% | |
| CTCCTCTCATTCGTTTCATT+TGG | - | chr5_2:24427847-24427866 | Msa0764460:CDS | 40.0% | |
| TACTTGGAACACCTTAGACT+TGG | - | chr5_2:24427925-24427944 | Msa0764460:intron | 40.0% | |
| GATCGTTTGCTTCTCCATAA+AGG | + | chr5_2:24428021-24428040 | None:intergenic | 40.0% | |
| AAACGATCCTAGGAGTAACT+TGG | - | chr5_2:24428033-24428052 | Msa0764460:intron | 40.0% | |
| GAAAACACCAAGTTACTCCT+AGG | + | chr5_2:24428043-24428062 | None:intergenic | 40.0% | |
| !!! | GGAGTAACTTGGTGTTTTCT+AGG | - | chr5_2:24428044-24428063 | Msa0764460:CDS | 40.0% |
| !!! | GTAACTTGGTGTTTTCTAGG+AGG | - | chr5_2:24428047-24428066 | Msa0764460:CDS | 40.0% |
| ! | GTAAGTGGGGATTTCCTTTT+AGG | + | chr5_2:24428451-24428470 | None:intergenic | 40.0% |
| ATCCCCACTTACGTAATATG+AGG | - | chr5_2:24428459-24428478 | Msa0764460:intron | 40.0% | |
| AGCCTCATATTACGTAAGTG+GGG | + | chr5_2:24428464-24428483 | None:intergenic | 40.0% | |
| TTGAACATACTACTTCCCAC+AGG | - | chr5_2:24428550-24428569 | Msa0764460:intron | 40.0% | |
| TATATGAACAAGGGCGACAT+AGG | + | chr5_2:24428645-24428664 | None:intergenic | 40.0% | |
| TGAATGACCAAGTCTAAGAG+AGG | + | chr5_2:24429513-24429532 | None:intergenic | 40.0% | |
| TGCCAACAATCCATTGAAGA+TGG | + | chr5_2:24429698-24429717 | None:intergenic | 40.0% | |
| GTCTTCCTTGAAACAACAAG+AGG | - | chr5_2:24429849-24429868 | Msa0764460:intron | 40.0% | |
| GGTGCAAACTGCAATGATAA+AGG | + | chr5_2:24430334-24430353 | None:intergenic | 40.0% | |
| ! | GTTTGCACCTGATAACGATT+TGG | - | chr5_2:24430345-24430364 | Msa0764460:CDS | 40.0% |
| ACTCCTCTTCAGTGGAAAAT+TGG | - | chr5_2:24430369-24430388 | Msa0764460:CDS | 40.0% | |
| ! | GGTTTATGTATCGATGCAGA+TGG | - | chr5_2:24430518-24430537 | Msa0764460:intron | 40.0% |
| CACAAATCCGTTGTTTGTTC+TGG | + | chr5_2:24430612-24430631 | None:intergenic | 40.0% | |
| !! | GAGTGTGACTTTGAAGTGAT+AGG | - | chr5_2:24430849-24430868 | Msa0764460:CDS | 40.0% |
| ! | TCGGTCTATTTCTTGCAACT+TGG | - | chr5_2:24430896-24430915 | Msa0764460:five_prime_UTR | 40.0% |
| ! | CGACGAGAAACTTGTTCTTG+CGG | + | chr5_2:24427562-24427581 | None:intergenic | 45.0% |
| AAGTTTCTCGTCGATGGCTA+TGG | - | chr5_2:24427569-24427588 | Msa0764460:three_prime_UTR | 45.0% | |
| TGTGTGTATGTGTGTGGATG+TGG | + | chr5_2:24427822-24427841 | None:intergenic | 45.0% | |
| AGAAAACTGCAGTAGCGACT+TGG | + | chr5_2:24427955-24427974 | None:intergenic | 45.0% | |
| ATGGAGAAGCAAACGATCCT+AGG | - | chr5_2:24428023-24428042 | Msa0764460:intron | 45.0% | |
| TCGAATGAGAACCTCCTAGA+GGG | + | chr5_2:24428073-24428092 | None:intergenic | 45.0% | |
| ATCGAATGAGAACCTCCTAG+AGG | + | chr5_2:24428074-24428093 | None:intergenic | 45.0% | |
| !! | TTTGATTTGCTCACGGCTCT+TGG | + | chr5_2:24428314-24428333 | None:intergenic | 45.0% |
| TACAAGCAGCAGATTTGCGA+TGG | - | chr5_2:24429014-24429033 | Msa0764460:intron | 45.0% | |
| CCACTTAGCCCATGATCTTT+CGG | + | chr5_2:24429176-24429195 | None:intergenic | 45.0% | |
| ! | CGAAAGATCATGGGCTAAGT+GGG | - | chr5_2:24429174-24429193 | Msa0764460:intron | 45.0% |
| ! | GAAAGATCATGGGCTAAGTG+GGG | - | chr5_2:24429175-24429194 | Msa0764460:intron | 45.0% |
| TCCTAACATACCGTGAGTTG+AGG | - | chr5_2:24429316-24429335 | Msa0764460:intron | 45.0% | |
| ACCTCAACTCACGGTATGTT+AGG | + | chr5_2:24429320-24429339 | None:intergenic | 45.0% | |
| ! | TTTGCCTCCGTGTTTTCCTT+TGG | - | chr5_2:24429356-24429375 | Msa0764460:intron | 45.0% |
| ATCTGTGGCTGATCAGTACA+AGG | + | chr5_2:24429387-24429406 | None:intergenic | 45.0% | |
| GAAAATTCAGTGGAGAGTGG+AGG | - | chr5_2:24429454-24429473 | Msa0764460:intron | 45.0% | |
| TGACCAAGTCTAAGAGAGGT+GGG | + | chr5_2:24429509-24429528 | None:intergenic | 45.0% | |
| ATGACCAAGTCTAAGAGAGG+TGG | + | chr5_2:24429510-24429529 | None:intergenic | 45.0% | |
| GGTCATTCATGTGTTCCATG+TGG | - | chr5_2:24429524-24429543 | Msa0764460:intron | 45.0% | |
| TTAGAGCTATCCATGTCCCA+TGG | - | chr5_2:24429596-24429615 | Msa0764460:intron | 45.0% | |
| AGTGTTAGAACCATGGGACA+TGG | + | chr5_2:24429609-24429628 | None:intergenic | 45.0% | |
| TAGTGATTCAACGGGTGACT+TGG | - | chr5_2:24429758-24429777 | Msa0764460:intron | 45.0% | |
| !! | AGGTCCCTCTTGTTGTTTCA+AGG | + | chr5_2:24429857-24429876 | None:intergenic | 45.0% |
| GGTCTAACTGATAGATCAGG+TGG | + | chr5_2:24430222-24430241 | None:intergenic | 45.0% | |
| GGAGGTCTAACTGATAGATC+AGG | + | chr5_2:24430225-24430244 | None:intergenic | 45.0% | |
| !! | AGGAGTGCCAAATCGTTATC+AGG | + | chr5_2:24430355-24430374 | None:intergenic | 45.0% |
| ATCGATGCAGATGGTGTGAA+AGG | - | chr5_2:24430527-24430546 | Msa0764460:intron | 45.0% | |
| GCAGATGGTGTGAAAGGAAT+TGG | - | chr5_2:24430533-24430552 | Msa0764460:intron | 45.0% | |
| !! | ACTTTGAAGTGATAGGGCAG+TGG | - | chr5_2:24430856-24430875 | Msa0764460:exon | 45.0% |
| !! | CTTTGAAGTGATAGGGCAGT+GGG | - | chr5_2:24430857-24430876 | Msa0764460:exon | 45.0% |
| GGGTACTCTTGGTCTCTTAT+CGG | - | chr5_2:24430877-24430896 | Msa0764460:five_prime_UTR | 45.0% | |
| GTCGATGGCTATGGAGATTC+TGG | - | chr5_2:24427578-24427597 | Msa0764460:three_prime_UTR | 50.0% | |
| !! | TGTTTTCTAGGAGGCCCTCT+AGG | - | chr5_2:24428056-24428075 | Msa0764460:CDS | 50.0% |
| ! | GCAAGCTGATAGTGCGGTAA+AGG | + | chr5_2:24428262-24428281 | None:intergenic | 50.0% |
| ! | AGCTTGCTCTGGCGTATTAC+AGG | - | chr5_2:24428275-24428294 | Msa0764460:intron | 50.0% |
| GCTCTGGCGTATTACAGGAT+TGG | - | chr5_2:24428280-24428299 | Msa0764460:intron | 50.0% | |
| ! | CCGAAAGATCATGGGCTAAG+TGG | - | chr5_2:24429173-24429192 | Msa0764460:intron | 50.0% |
| GGCAGATTGACCTCAACTCA+CGG | + | chr5_2:24429329-24429348 | None:intergenic | 50.0% | |
| AACACGGAGGCAAAGTGACT+TGG | + | chr5_2:24429350-24429369 | None:intergenic | 50.0% | |
| GACTCCAAAGGAAAACACGG+AGG | + | chr5_2:24429363-24429382 | None:intergenic | 50.0% | |
| GGCGACTCCAAAGGAAAACA+CGG | + | chr5_2:24429366-24429385 | None:intergenic | 50.0% | |
| TCAGTACAAGGCGACTCCAA+AGG | + | chr5_2:24429375-24429394 | None:intergenic | 50.0% | |
| TCTAAGAGAGGTGGGATGGT+GGG | + | chr5_2:24429501-24429520 | None:intergenic | 50.0% | |
| CAAGTCTAAGAGAGGTGGGA+TGG | + | chr5_2:24429505-24429524 | None:intergenic | 50.0% | |
| CATCCCACCTCTCTTAGACT+TGG | - | chr5_2:24429503-24429522 | Msa0764460:intron | 50.0% | |
| GATTTGGCACTCCTCTTCAG+TGG | - | chr5_2:24430361-24430380 | Msa0764460:CDS | 50.0% | |
| GCATGGGCCAGAACAAACAA+CGG | - | chr5_2:24430602-24430621 | Msa0764460:intron | 50.0% | |
| GGTCTCTCGAACAATGCCGA+TGG | - | chr5_2:24427683-24427702 | Msa0764460:three_prime_UTR | 55.0% | |
| GTGTGGATGTGGTGAAGCGA+AGG | + | chr5_2:24427811-24427830 | None:intergenic | 55.0% | |
| GACTTGGCGAGCCAAGTCTA+AGG | + | chr5_2:24427939-24427958 | None:intergenic | 55.0% | |
| ! | TTTCTAGGAGGCCCTCTAGG+AGG | - | chr5_2:24428059-24428078 | Msa0764460:CDS | 55.0% |
| ! | ACCGCACTATCAGCTTGCTC+TGG | - | chr5_2:24428264-24428283 | Msa0764460:intron | 55.0% |
| ! | GCCAGAGCAAGCTGATAGTG+CGG | + | chr5_2:24428268-24428287 | None:intergenic | 55.0% |
| TTCAGTGGAGAGTGGAGGAG+TGG | - | chr5_2:24429459-24429478 | Msa0764460:intron | 55.0% | |
| TCAGTGGAGAGTGGAGGAGT+GGG | - | chr5_2:24429460-24429479 | Msa0764460:intron | 55.0% | |
| CTAAGAGAGGTGGGATGGTG+GGG | + | chr5_2:24429500-24429519 | None:intergenic | 55.0% | |
| GTCTAAGAGAGGTGGGATGG+TGG | + | chr5_2:24429502-24429521 | None:intergenic | 55.0% | |
| TTCCATGTGGTCGTAGCACG+AGG | - | chr5_2:24429537-24429556 | Msa0764460:intron | 55.0% | |
| GTATGACGGCACTAGCTGCA+GGG | - | chr5_2:24430555-24430574 | Msa0764460:intron | 55.0% | |
| CTAGCTGCAGGGTTCGTTGT+CGG | - | chr5_2:24430566-24430585 | Msa0764460:intron | 55.0% | |
| TCGGTAGCATTGCTGCAGCA+TGG | - | chr5_2:24430585-24430604 | Msa0764460:intron | 55.0% | |
| CGGTAGCATTGCTGCAGCAT+GGG | - | chr5_2:24430586-24430605 | Msa0764460:intron | 55.0% | |
| GATAGGGCAGTGGGTACTCT+TGG | - | chr5_2:24430866-24430885 | Msa0764460:exon | 55.0% | |
| TGGAGGAGTGGGAGGATCGT+GGG | - | chr5_2:24429471-24429490 | Msa0764460:intron | 60.0% | |
| GACCTCGTGCTACGACCACA+TGG | + | chr5_2:24429542-24429561 | None:intergenic | 60.0% | |
| GGTATGACGGCACTAGCTGC+AGG | - | chr5_2:24430554-24430573 | Msa0764460:intron | 60.0% | |
| GTGGAGAGTGGAGGAGTGGG+AGG | - | chr5_2:24429463-24429482 | Msa0764460:intron | 65.0% | |
| GTGGAGGAGTGGGAGGATCG+TGG | - | chr5_2:24429470-24429489 | Msa0764460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 24427469 | 24430984 | 24427469 | ID=Msa0764460;Name=Msa0764460 |
| chr5_2 | mRNA | 24427469 | 24430984 | 24427469 | ID=Msa0764460-mRNA-1;Parent=Msa0764460;Name=Msa0764460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|5|266|235 |
| chr5_2 | exon | 24427469 | 24427916 | 24427469 | ID=Msa0764460-mRNA-1:exon:9974;Parent=Msa0764460-mRNA-1 |
| chr5_2 | exon | 24428044 | 24428107 | 24428044 | ID=Msa0764460-mRNA-1:exon:9973;Parent=Msa0764460-mRNA-1 |
| chr5_2 | exon | 24430108 | 24430217 | 24430108 | ID=Msa0764460-mRNA-1:exon:9972;Parent=Msa0764460-mRNA-1 |
| chr5_2 | exon | 24430305 | 24430437 | 24430305 | ID=Msa0764460-mRNA-1:exon:9971;Parent=Msa0764460-mRNA-1 |
| chr5_2 | exon | 24430653 | 24430984 | 24430653 | ID=Msa0764460-mRNA-1:exon:9970;Parent=Msa0764460-mRNA-1 |
| chr5_2 | five_prime_UTR | 24430872 | 24430984 | 24430872 | ID=Msa0764460-mRNA-1:five_prime_utr;Parent=Msa0764460-mRNA-1 |
| chr5_2 | CDS | 24430653 | 24430871 | 24430653 | ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1 |
| chr5_2 | CDS | 24430305 | 24430437 | 24430305 | ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1 |
| chr5_2 | CDS | 24430108 | 24430217 | 24430108 | ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1 |
| chr5_2 | CDS | 24428044 | 24428107 | 24428044 | ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1 |
| chr5_2 | CDS | 24427735 | 24427916 | 24427735 | ID=Msa0764460-mRNA-1:cds;Parent=Msa0764460-mRNA-1 |
| chr5_2 | three_prime_UTR | 24427469 | 24427734 | 24427469 | ID=Msa0764460-mRNA-1:three_prime_utr;Parent=Msa0764460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
