Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584860 | XP_024638163.1 | 87.224 | 407 | 8 | 2 | 1 | 398 | 1 | 372 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584860 | sp|Q9LDC0|FKB42_ARATH | 60.539 | 408 | 107 | 6 | 1 | 397 | 1 | 365 | 2.87e-169 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584860 | G7JTJ9 | 87.224 | 407 | 8 | 2 | 1 | 398 | 1 | 372 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001590 | Msa0584860 | 0.813112 | 3.018698e-51 | -8.615850e-47 |
| Msa0006070 | Msa0584860 | 0.814461 | 1.522807e-51 | -8.615850e-47 |
| Msa0007280 | Msa0584860 | 0.815773 | 7.786504e-52 | -8.615850e-47 |
| Msa0015390 | Msa0584860 | 0.806867 | 6.676275e-50 | -8.615850e-47 |
| Msa0021510 | Msa0584860 | 0.805473 | 1.312199e-49 | -8.615850e-47 |
| Msa0028660 | Msa0584860 | 0.805590 | 1.240409e-49 | -8.615850e-47 |
| Msa0032090 | Msa0584860 | 0.804851 | 1.771100e-49 | -8.615850e-47 |
| Msa0032580 | Msa0584860 | 0.803062 | 4.170576e-49 | -8.615850e-47 |
| Msa0033980 | Msa0584860 | 0.833534 | 5.047715e-56 | -8.615850e-47 |
| Msa0040450 | Msa0584860 | 0.836295 | 1.017427e-56 | -8.615850e-47 |
| Msa0041720 | Msa0584860 | 0.810393 | 1.178742e-50 | -8.615850e-47 |
| Msa0052770 | Msa0584860 | 0.812586 | 3.934914e-51 | -8.615850e-47 |
| Msa0053600 | Msa0584860 | 0.805417 | 1.348263e-49 | -8.615850e-47 |
| Msa0054480 | Msa0584860 | 0.817768 | 2.778552e-52 | -8.615850e-47 |
| Msa0055740 | Msa0584860 | 0.808636 | 2.809398e-50 | -8.615850e-47 |
| Msa0079080 | Msa0584860 | 0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0079380 | Msa0584860 | 0.813615 | 2.340467e-51 | -8.615850e-47 |
| Msa0081930 | Msa0584860 | 0.845345 | 4.304862e-59 | -8.615850e-47 |
| Msa0091210 | Msa0584860 | -0.804704 | 1.901468e-49 | -8.615850e-47 |
| Msa0091250 | Msa0584860 | -0.812280 | 4.589027e-51 | -8.615850e-47 |
| Msa0100090 | Msa0584860 | 0.819508 | 1.119340e-52 | -8.615850e-47 |
| Msa0101700 | Msa0584860 | 0.814928 | 1.199985e-51 | -8.615850e-47 |
| Msa0104700 | Msa0584860 | 0.801876 | 7.320942e-49 | -8.615850e-47 |
| Msa0115270 | Msa0584860 | 0.831266 | 1.840308e-55 | -8.615850e-47 |
| Msa0115390 | Msa0584860 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0116770 | Msa0584860 | 0.806439 | 8.221440e-50 | -8.615850e-47 |
| Msa0127660 | Msa0584860 | 0.807954 | 3.926659e-50 | -8.615850e-47 |
| Msa0128020 | Msa0584860 | 0.809855 | 1.539378e-50 | -8.615850e-47 |
| Msa0135380 | Msa0584860 | 0.800353 | 1.500125e-48 | -8.615850e-47 |
| Msa0136070 | Msa0584860 | 0.835945 | 1.248938e-56 | -8.615850e-47 |
| Msa0136100 | Msa0584860 | 0.810178 | 1.311263e-50 | -8.615850e-47 |
| Msa0140390 | Msa0584860 | 0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0143140 | Msa0584860 | -0.818598 | 1.803164e-52 | -8.615850e-47 |
| Msa0145440 | Msa0584860 | 0.805599 | 1.234755e-49 | -8.615850e-47 |
| Msa0152140 | Msa0584860 | 0.800035 | 1.740405e-48 | -8.615850e-47 |
| Msa0159340 | Msa0584860 | 0.818481 | 1.916876e-52 | -8.615850e-47 |
| Msa0160550 | Msa0584860 | 0.824609 | 7.355598e-54 | -8.615850e-47 |
| Msa0165210 | Msa0584860 | 0.810040 | 1.404589e-50 | -8.615850e-47 |
| Msa0165220 | Msa0584860 | 0.832253 | 1.050491e-55 | -8.615850e-47 |
| Msa0171300 | Msa0584860 | 0.813753 | 2.182295e-51 | -8.615850e-47 |
| Msa0171540 | Msa0584860 | 0.810085 | 1.373418e-50 | -8.615850e-47 |
| Msa0172970 | Msa0584860 | 0.801999 | 6.905788e-49 | -8.615850e-47 |
| Msa0193470 | Msa0584860 | 0.818779 | 1.640114e-52 | -8.615850e-47 |
| Msa0197660 | Msa0584860 | 0.831558 | 1.559016e-55 | -8.615850e-47 |
| Msa0211150 | Msa0584860 | 0.820533 | 6.524741e-53 | -8.615850e-47 |
| Msa0212310 | Msa0584860 | 0.815956 | 7.085338e-52 | -8.615850e-47 |
| Msa0222890 | Msa0584860 | 0.802390 | 5.738480e-49 | -8.615850e-47 |
| Msa0235530 | Msa0584860 | -0.800866 | 1.178774e-48 | -8.615850e-47 |
| Msa0367870 | Msa0584860 | 0.809476 | 1.856858e-50 | -8.615850e-47 |
| Msa0372340 | Msa0584860 | 0.834695 | 2.583627e-56 | -8.615850e-47 |
| Msa0383800 | Msa0584860 | 0.816028 | 6.829346e-52 | -8.615850e-47 |
| Msa0390400 | Msa0584860 | -0.823764 | 1.161834e-53 | -8.615850e-47 |
| Msa0397750 | Msa0584860 | 0.820578 | 6.369451e-53 | -8.615850e-47 |
| Msa0398380 | Msa0584860 | 0.805914 | 1.060338e-49 | -8.615850e-47 |
| Msa0416650 | Msa0584860 | 0.834149 | 3.541237e-56 | -8.615850e-47 |
| Msa0417270 | Msa0584860 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
| Msa0428080 | Msa0584860 | 0.820350 | 7.186086e-53 | -8.615850e-47 |
| Msa0431670 | Msa0584860 | 0.825962 | 3.520791e-54 | -8.615850e-47 |
| Msa0432770 | Msa0584860 | 0.854622 | 1.088875e-61 | -8.615850e-47 |
| Msa0434180 | Msa0584860 | 0.805818 | 1.110693e-49 | -8.615850e-47 |
| Msa0435390 | Msa0584860 | 0.808185 | 3.506636e-50 | -8.615850e-47 |
| Msa0469160 | Msa0584860 | 0.812701 | 3.713001e-51 | -8.615850e-47 |
| Msa0480000 | Msa0584860 | 0.844986 | 5.381571e-59 | -8.615850e-47 |
| Msa0239800 | Msa0584860 | 0.831775 | 1.378932e-55 | -8.615850e-47 |
| Msa0245310 | Msa0584860 | 0.830315 | 3.146523e-55 | -8.615850e-47 |
| Msa0260680 | Msa0584860 | 0.811073 | 8.402436e-51 | -8.615850e-47 |
| Msa0265380 | Msa0584860 | 0.805860 | 1.088713e-49 | -8.615850e-47 |
| Msa0269810 | Msa0584860 | 0.801360 | 9.341739e-49 | -8.615850e-47 |
| Msa0277820 | Msa0584860 | 0.808725 | 2.689332e-50 | -8.615850e-47 |
| Msa0280090 | Msa0584860 | 0.809524 | 1.813668e-50 | -8.615850e-47 |
| Msa0283910 | Msa0584860 | 0.836821 | 7.474974e-57 | -8.615850e-47 |
| Msa0303360 | Msa0584860 | 0.805032 | 1.623306e-49 | -8.615850e-47 |
| Msa0306710 | Msa0584860 | 0.801434 | 9.022419e-49 | -8.615850e-47 |
| Msa0309770 | Msa0584860 | 0.838028 | 3.668397e-57 | -8.615850e-47 |
| Msa0317510 | Msa0584860 | 0.835770 | 1.382494e-56 | -8.615850e-47 |
| Msa0318980 | Msa0584860 | 0.808709 | 2.710854e-50 | -8.615850e-47 |
| Msa0325550 | Msa0584860 | 0.809427 | 1.902832e-50 | -8.615850e-47 |
| Msa0333720 | Msa0584860 | -0.801269 | 9.750672e-49 | -8.615850e-47 |
| Msa0337620 | Msa0584860 | 0.806040 | 9.977967e-50 | -8.615850e-47 |
| Msa0339250 | Msa0584860 | 0.810080 | 1.376789e-50 | -8.615850e-47 |
| Msa0340450 | Msa0584860 | 0.827594 | 1.435356e-54 | -8.615850e-47 |
| Msa0351030 | Msa0584860 | 0.802385 | 5.753726e-49 | -8.615850e-47 |
| Msa0353630 | Msa0584860 | 0.810014 | 1.423082e-50 | -8.615850e-47 |
| Msa0361140 | Msa0584860 | 0.802932 | 4.437158e-49 | -8.615850e-47 |
| Msa0363790 | Msa0584860 | 0.810723 | 1.000507e-50 | -8.615850e-47 |
| Msa0500360 | Msa0584860 | 0.802325 | 5.919343e-49 | -8.615850e-47 |
| Msa0512750 | Msa0584860 | 0.843958 | 1.017205e-58 | -8.615850e-47 |
| Msa0515010 | Msa0584860 | 0.815207 | 1.040269e-51 | -8.615850e-47 |
| Msa0529890 | Msa0584860 | 0.807041 | 6.134403e-50 | -8.615850e-47 |
| Msa0558690 | Msa0584860 | 0.807270 | 5.487897e-50 | -8.615850e-47 |
| Msa0584860 | Msa0585500 | 0.802821 | 4.676218e-49 | -8.615850e-47 |
| Msa0584860 | Msa0585560 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0584860 | Msa0593650 | 0.838663 | 2.515937e-57 | -8.615850e-47 |
| Msa0584860 | Msa0596800 | 0.847376 | 1.202281e-59 | -8.615850e-47 |
| Msa0584860 | Msa0598860 | 0.808178 | 3.518114e-50 | -8.615850e-47 |
| Msa0584860 | Msa0602310 | 0.821550 | 3.803966e-53 | -8.615850e-47 |
| Msa0584860 | Msa0610430 | 0.817031 | 4.071769e-52 | -8.615850e-47 |
| Msa0584860 | Msa0616240 | 0.804351 | 2.252334e-49 | -8.615850e-47 |
| Msa0584860 | Msa0621490 | 0.810879 | 9.256133e-51 | -8.615850e-47 |
| Msa0584860 | Msa0621590 | 0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0584860 | Msa0623080 | 0.835729 | 1.416297e-56 | -8.615850e-47 |
| Msa0584860 | Msa0625720 | 0.807825 | 4.184197e-50 | -8.615850e-47 |
| Msa0584860 | Msa0629650 | 0.806540 | 7.828786e-50 | -8.615850e-47 |
| Msa0584860 | Msa0638280 | 0.811236 | 7.742921e-51 | -8.615850e-47 |
| Msa0584860 | Msa0638320 | 0.802770 | 4.792442e-49 | -8.615850e-47 |
| Msa0584860 | Msa0641670 | 0.832587 | 8.681678e-56 | -8.615850e-47 |
| Msa0584860 | Msa0643180 | 0.815230 | 1.028274e-51 | -8.615850e-47 |
| Msa0584860 | Msa0652940 | 0.838076 | 3.564944e-57 | -8.615850e-47 |
| Msa0584860 | Msa0661190 | -0.815487 | 9.015169e-52 | -8.615850e-47 |
| Msa0584860 | Msa0661650 | 0.809813 | 1.571411e-50 | -8.615850e-47 |
| Msa0584860 | Msa0663380 | 0.833237 | 5.986523e-56 | -8.615850e-47 |
| Msa0584860 | Msa0663390 | 0.803899 | 2.797095e-49 | -8.615850e-47 |
| Msa0584860 | Msa0677270 | 0.801989 | 6.938661e-49 | -8.615850e-47 |
| Msa0584860 | Msa0683170 | 0.801263 | 9.780123e-49 | -8.615850e-47 |
| Msa0584860 | Msa0688390 | 0.808006 | 3.828558e-50 | -8.615850e-47 |
| Msa0584860 | Msa0692830 | 0.812510 | 4.088413e-51 | -8.615850e-47 |
| Msa0584860 | Msa0692950 | 0.814083 | 1.845678e-51 | -8.615850e-47 |
| Msa0584860 | Msa0693380 | 0.814091 | 1.837752e-51 | -8.615850e-47 |
| Msa0584860 | Msa0696450 | 0.802387 | 5.748541e-49 | -8.615850e-47 |
| Msa0584860 | Msa0698030 | 0.803541 | 3.319188e-49 | -8.615850e-47 |
| Msa0584860 | Msa0699570 | 0.804245 | 2.369554e-49 | -8.615850e-47 |
| Msa0584860 | Msa0701900 | 0.820626 | 6.211428e-53 | -8.615850e-47 |
| Msa0584860 | Msa0701920 | 0.804955 | 1.685060e-49 | -8.615850e-47 |
| Msa0584860 | Msa0705870 | 0.830773 | 2.431791e-55 | -8.615850e-47 |
| Msa0584860 | Msa0707250 | 0.803447 | 3.471235e-49 | -8.615850e-47 |
| Msa0584860 | Msa0716530 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa0584860 | Msa0716840 | 0.818912 | 1.530114e-52 | -8.615850e-47 |
| Msa0584860 | Msa0743950 | 0.803976 | 2.695039e-49 | -8.615850e-47 |
| Msa0584860 | Msa0745790 | 0.807998 | 3.842571e-50 | -8.615850e-47 |
| Msa0584860 | Msa0764460 | 0.819897 | 9.124152e-53 | -8.615850e-47 |
| Msa0584860 | Msa0804730 | 0.806050 | 9.930803e-50 | -8.615850e-47 |
| Msa0584860 | Msa0808270 | 0.817677 | 2.913089e-52 | -8.615850e-47 |
| Msa0584860 | Msa0813740 | 0.818772 | 1.646040e-52 | -8.615850e-47 |
| Msa0584860 | Msa0826320 | 0.805244 | 1.465700e-49 | -8.615850e-47 |
| Msa0584860 | Msa0831850 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa0584860 | Msa0850960 | 0.822708 | 2.049549e-53 | -8.615850e-47 |
| Msa0584860 | Msa0864250 | 0.802411 | 5.682897e-49 | -8.615850e-47 |
| Msa0584860 | Msa0865330 | 0.813807 | 2.123092e-51 | -8.615850e-47 |
| Msa0584860 | Msa0884470 | 0.811672 | 6.225792e-51 | -8.615850e-47 |
| Msa0584860 | Msa0896750 | 0.808563 | 2.912610e-50 | -8.615850e-47 |
| Msa0584860 | Msa0897330 | 0.807442 | 5.045022e-50 | -8.615850e-47 |
| Msa0584860 | Msa0920870 | 0.811241 | 7.724734e-51 | -8.615850e-47 |
| Msa0584860 | Msa0923330 | 0.812680 | 3.752409e-51 | -8.615850e-47 |
| Msa0584860 | Msa0931720 | 0.802268 | 6.081733e-49 | -8.615850e-47 |
| Msa0584860 | Msa0936300 | 0.809487 | 1.847244e-50 | -8.615850e-47 |
| Msa0584860 | Msa0939250 | 0.802277 | 6.055274e-49 | -8.615850e-47 |
| Msa0584860 | Msa0943190 | 0.803263 | 3.789958e-49 | -8.615850e-47 |
| Msa0584860 | Msa0944190 | 0.801630 | 8.225738e-49 | -8.615850e-47 |
| Msa0584860 | Msa0969520 | 0.812289 | 4.569875e-51 | -8.615850e-47 |
| Msa0584860 | Msa0969810 | 0.835431 | 1.685041e-56 | -8.615850e-47 |
| Msa0584860 | Msa0973600 | 0.803383 | 3.578995e-49 | -8.615850e-47 |
| Msa0584860 | Msa0974080 | 0.810538 | 1.096528e-50 | -8.615850e-47 |
| Msa0584860 | Msa1014540 | 0.825419 | 4.736181e-54 | -8.615850e-47 |
| Msa0584860 | Msa1023400 | 0.822310 | 2.537034e-53 | -8.615850e-47 |
| Msa0584860 | Msa1037420 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0584860 | Msa1064250 | 0.807607 | 4.654829e-50 | -8.615850e-47 |
| Msa0584860 | Msa1075540 | 0.803844 | 2.871859e-49 | -8.615850e-47 |
| Msa0584860 | Msa1082500 | 0.814249 | 1.695765e-51 | -8.615850e-47 |
| Msa0584860 | Msa1103980 | 0.820996 | 5.105648e-53 | -8.615850e-47 |
| Msa0584860 | Msa1104090 | 0.808749 | 2.657419e-50 | -8.615850e-47 |
| Msa0584860 | Msa1111870 | 0.816690 | 4.856961e-52 | -8.615850e-47 |
| Msa0584860 | Msa1113170 | 0.808327 | 3.269932e-50 | -8.615850e-47 |
| Msa0584860 | Msa1116130 | -0.813609 | 2.347034e-51 | -8.615850e-47 |
| Msa0584860 | Msa1147900 | 0.826924 | 2.077204e-54 | -8.615850e-47 |
| Msa0584860 | Msa1154280 | 0.818767 | 1.650448e-52 | -8.615850e-47 |
| Msa0584860 | Msa1162550 | -0.812249 | 4.662222e-51 | -8.615850e-47 |
| Msa0584860 | Msa1173140 | 0.809853 | 1.540550e-50 | -8.615850e-47 |
| Msa0584860 | Msa1174040 | 0.805270 | 1.447367e-49 | -8.615850e-47 |
| Msa0584860 | Msa1178180 | 0.802005 | 6.889250e-49 | -8.615850e-47 |
| Msa0584860 | Msa1203250 | 0.837426 | 5.235900e-57 | -8.615850e-47 |
| Msa0584860 | Msa1205160 | -0.809093 | 2.243764e-50 | -8.615850e-47 |
| Msa0584860 | Msa1228590 | 0.801792 | 7.618482e-49 | -8.615850e-47 |
| Msa0584860 | Msa1244250 | 0.804758 | 1.852699e-49 | -8.615850e-47 |
| Msa0584860 | Msa1249490 | 0.811291 | 7.533456e-51 | -8.615850e-47 |
| Msa0584860 | Msa1263020 | 0.816217 | 6.196857e-52 | -8.615850e-47 |
| Msa0584860 | Msa1271210 | 0.803379 | 3.585474e-49 | -8.615850e-47 |
| Msa0584860 | Msa1275360 | 0.812389 | 4.344338e-51 | -8.615850e-47 |
| Msa0584860 | Msa1280420 | 0.800923 | 1.147847e-48 | -8.615850e-47 |
| Msa0584860 | Msa1287460 | 0.803526 | 3.343231e-49 | -8.615850e-47 |
| Msa0584860 | Msa1302850 | 0.802554 | 5.308335e-49 | -8.615850e-47 |
| Msa0584860 | Msa1306560 | 0.803219 | 3.870353e-49 | -8.615850e-47 |
| Msa0584860 | Msa1316780 | 0.806658 | 7.392391e-50 | -8.615850e-47 |
| Msa0584860 | Msa1332040 | -0.803938 | 2.745323e-49 | -8.615850e-47 |
| Msa0584860 | Msa1340470 | 0.800079 | 1.705361e-48 | -8.615850e-47 |
| Msa0584860 | Msa1344340 | 0.820322 | 7.291978e-53 | -8.615850e-47 |
| Msa0584860 | Msa1371430 | 0.844213 | 8.688028e-59 | -8.615850e-47 |
| Msa0584860 | Msa1375380 | 0.812463 | 4.186347e-51 | -8.615850e-47 |
| Msa0584860 | Msa1375680 | 0.806348 | 8.591427e-50 | -8.615850e-47 |
| Msa0584860 | Msa1384240 | 0.803441 | 3.480927e-49 | -8.615850e-47 |
| Msa0584860 | Msa1411100 | 0.804705 | 1.899858e-49 | -8.615850e-47 |
| Msa0584860 | Msa1415640 | 0.843578 | 1.285747e-58 | -8.615850e-47 |
| Msa0584860 | Msa1419800 | -0.821940 | 3.089772e-53 | -8.615850e-47 |
| Msa0584860 | Msa1423880 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa0584860 | Msa1424750 | 0.847061 | 1.467245e-59 | -8.615850e-47 |
| Msa0584860 | Msa1455490 | 0.804505 | 2.092168e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584860 | MtrunA17_Chr4g0019501 | 87.224 | 407 | 8 | 2 | 1 | 398 | 1 | 372 | 0.0 | 712 |
| Msa0584860 | MtrunA17_Chr8g0339141 | 36.481 | 233 | 142 | 4 | 126 | 357 | 320 | 547 | 1.54e-32 | 129 |
| Msa0584860 | MtrunA17_Chr7g0234801 | 34.468 | 235 | 149 | 2 | 126 | 360 | 313 | 542 | 9.21e-32 | 126 |
| Msa0584860 | MtrunA17_Chr8g0377771 | 35.776 | 232 | 143 | 3 | 127 | 357 | 317 | 543 | 1.82e-31 | 125 |
| Msa0584860 | MtrunA17_Chr1g0152361 | 31.687 | 243 | 152 | 6 | 127 | 364 | 146 | 379 | 6.90e-26 | 107 |
| Msa0584860 | MtrunA17_Chr7g0255551 | 31.278 | 227 | 149 | 4 | 127 | 353 | 299 | 518 | 1.18e-20 | 94.0 |
| Msa0584860 | MtrunA17_Chr4g0027201 | 31.148 | 244 | 144 | 8 | 127 | 361 | 324 | 552 | 2.03e-19 | 90.5 |
| Msa0584860 | MtrunA17_Chr8g0338001 | 32.051 | 156 | 99 | 4 | 126 | 280 | 226 | 375 | 1.49e-14 | 74.7 |
| Msa0584860 | MtrunA17_Chr8g0338631 | 31.852 | 135 | 85 | 4 | 147 | 280 | 1 | 129 | 3.14e-12 | 63.9 |
| Msa0584860 | MtrunA17_Chr7g0237741 | 30.303 | 132 | 82 | 1 | 207 | 338 | 92 | 213 | 9.01e-12 | 65.1 |
| Msa0584860 | MtrunA17_Chr4g0025271 | 31.250 | 160 | 102 | 1 | 177 | 336 | 70 | 221 | 7.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584860 | AT3G21640.1 | 60.539 | 408 | 107 | 6 | 1 | 397 | 1 | 365 | 2.92e-170 | 480 |
| Msa0584860 | AT3G25230.2 | 31.803 | 305 | 175 | 7 | 55 | 357 | 272 | 545 | 3.18e-29 | 119 |
| Msa0584860 | AT3G25230.1 | 31.803 | 305 | 175 | 7 | 55 | 357 | 272 | 545 | 3.19e-29 | 119 |
| Msa0584860 | AT5G48570.1 | 32.288 | 319 | 181 | 8 | 49 | 363 | 274 | 561 | 3.67e-29 | 119 |
| Msa0584860 | AT3G54010.2 | 31.076 | 251 | 145 | 8 | 127 | 366 | 232 | 465 | 7.07e-21 | 95.1 |
| Msa0584860 | AT3G54010.1 | 31.707 | 246 | 140 | 8 | 127 | 361 | 322 | 550 | 1.00e-20 | 94.7 |
| Msa0584860 | AT1G58450.1 | 32.716 | 162 | 98 | 5 | 201 | 358 | 1 | 155 | 5.10e-13 | 67.0 |
Find 113 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTAACAGACTTGTTATT+TGG | 0.191687 | 4_2:+4961393 | Msa0584860:intron |
| TCCTCACGCCCAGCACTCTT+TGG | 0.209842 | 4_2:-4960969 | None:intergenic |
| GGATGGAAATGTTCTGTTTC+AGG | 0.222182 | 4_2:+4961756 | Msa0584860:CDS |
| GAGATCTATAAAGGAATATT+TGG | 0.225703 | 4_2:+4963521 | Msa0584860:CDS |
| GCAATTTGAAGGCTTTATTT+AGG | 0.233759 | 4_2:+4963348 | Msa0584860:CDS |
| TCAACTTCAGAATCAACTTT+TGG | 0.240967 | 4_2:-4959592 | None:intergenic |
| TGCGGTACTGGTTGAGGTCT+TGG | 0.273240 | 4_2:-4963545 | None:intergenic |
| CTTGCAATTGCTTTATCTTC+AGG | 0.277406 | 4_2:-4963446 | None:intergenic |
| GACTTCATGTTCCAGTTGTT+TGG | 0.278250 | 4_2:+4961959 | Msa0584860:CDS |
| AGGTTCAAGGCTAATTTATT+TGG | 0.283449 | 4_2:-4963995 | None:intergenic |
| TCTGCCATTGGTGGAACATT+TGG | 0.294220 | 4_2:-4961556 | None:intergenic |
| GGTTACAAAACAAATTATTA+AGG | 0.302747 | 4_2:+4959630 | Msa0584860:CDS |
| TTGGTAGCAATTACAAGGTT+AGG | 0.305350 | 4_2:-4963942 | None:intergenic |
| CCAGTTGTTTGGGAAGTATA+GGG | 0.330723 | 4_2:+4961970 | Msa0584860:CDS |
| AAATGACTGGCTTGGGCATT+GGG | 0.332295 | 4_2:+4961449 | Msa0584860:CDS |
| CTGCGTGTGAGCTGGGAATT+AGG | 0.336747 | 4_2:+4961505 | Msa0584860:CDS |
| CGACCAATTGAGATGGTAAT+AGG | 0.338090 | 4_2:+4960414 | Msa0584860:CDS |
| GTTTGGGAAGTATAGGGATA+TGG | 0.339954 | 4_2:+4961976 | Msa0584860:CDS |
| ACTTCATGTTCCAGTTGTTT+GGG | 0.360386 | 4_2:+4961960 | Msa0584860:CDS |
| TTTGGGCTTGGTACGTGAAT+AGG | 0.367353 | 4_2:-4960951 | None:intergenic |
| CCTCACGCCCAGCACTCTTT+GGG | 0.374034 | 4_2:-4960968 | None:intergenic |
| CCCTATACTTCCCAAACAAC+TGG | 0.377001 | 4_2:-4961970 | None:intergenic |
| GGAATTGGTTCATATTTGTT+TGG | 0.380589 | 4_2:+4963573 | Msa0584860:CDS |
| GTTTATGAAGTTGAGCTCAT+TGG | 0.387560 | 4_2:+4961583 | Msa0584860:CDS |
| GGACTACTCAATAATTCTTC+AGG | 0.387637 | 4_2:-4959568 | None:intergenic |
| AAGCAGAAGGAGATCTATAA+AGG | 0.387775 | 4_2:+4963512 | Msa0584860:CDS |
| TCCAGTTGTTTGGGAAGTAT+AGG | 0.389067 | 4_2:+4961969 | Msa0584860:CDS |
| GAGCGTTGCTGCGTGTGAGC+TGG | 0.407608 | 4_2:+4961497 | Msa0584860:CDS |
| AAAATGTTGTAGCCTTTCAT+AGG | 0.416050 | 4_2:-4963724 | None:intergenic |
| GTGAGCTGGGAATTAGGATA+TGG | 0.419661 | 4_2:+4961511 | Msa0584860:CDS |
| TTTCCTATTACCATCTCAAT+TGG | 0.421411 | 4_2:-4960417 | None:intergenic |
| TGTCAAACACGATTACTCTA+TGG | 0.424232 | 4_2:-4963829 | None:intergenic |
| CATATTTGTTTGGCAGTGGT+TGG | 0.426113 | 4_2:+4963583 | Msa0584860:CDS |
| GAAATGACTGGCTTGGGCAT+TGG | 0.428307 | 4_2:+4961448 | Msa0584860:CDS |
| TGACTGTAGAGGAACGGATT+GGG | 0.429854 | 4_2:+4961713 | Msa0584860:CDS |
| CGCCCAGCACTCTTTGGGCT+TGG | 0.432809 | 4_2:-4960963 | None:intergenic |
| CTCAACCAGTACCGCAGAAA+AGG | 0.434004 | 4_2:+4963552 | Msa0584860:CDS |
| AAGAAAGAAATGACTGGCTT+GGG | 0.441743 | 4_2:+4961442 | Msa0584860:CDS |
| GAAAGTACTGAATATGCAAA+AGG | 0.441865 | 4_2:+4959538 | Msa0584860:CDS |
| TTGGGCAGACAGATGCTGCC+AGG | 0.451025 | 4_2:+4963393 | Msa0584860:CDS |
| ATGTCAGGCCATAGCTTACA+TGG | 0.460197 | 4_2:+4961931 | Msa0584860:intron |
| TGGTAGCAATTACAAGGTTA+GGG | 0.460657 | 4_2:-4963941 | None:intergenic |
| GAAGAAAGAAATGACTGGCT+TGG | 0.461382 | 4_2:+4961441 | Msa0584860:CDS |
| TAAACTTAAGAGAAGGTTCA+AGG | 0.470003 | 4_2:-4964008 | None:intergenic |
| GGCCATGCAACAGTATGAAA+TGG | 0.476558 | 4_2:+4961795 | Msa0584860:CDS |
| AAAGTACTGAATATGCAAAA+GGG | 0.478686 | 4_2:+4959539 | Msa0584860:CDS |
| GGGGTGGCAAGCATGAAAGC+TGG | 0.481889 | 4_2:+4961469 | Msa0584860:CDS |
| GAAGTATAGGGATATGGCTC+TGG | 0.484336 | 4_2:+4961982 | Msa0584860:CDS |
| ATTGAGATGGTAATAGGAAA+AGG | 0.485564 | 4_2:+4960420 | Msa0584860:CDS |
| CAGTACCGCAGAAAAGGAAT+TGG | 0.488177 | 4_2:+4963558 | Msa0584860:CDS |
| GGCTTTATTTAGGAGAGGTA+AGG | 0.490198 | 4_2:+4963358 | Msa0584860:CDS |
| GACAGGCCGCCGTGTTAAGA+TGG | 0.492108 | 4_2:-4962021 | None:intergenic |
| GGGTGGCAAGCATGAAAGCT+GGG | 0.494339 | 4_2:+4961470 | Msa0584860:CDS |
| GGTTCATATTTGTTTGGCAG+TGG | 0.498991 | 4_2:+4963579 | Msa0584860:CDS |
| TCATAAACTAAATCTGCCAT+TGG | 0.508037 | 4_2:-4961568 | None:intergenic |
| GTACCAAGCCCAAAGAGTGC+TGG | 0.508557 | 4_2:+4960960 | Msa0584860:CDS |
| TGAGGATGAGAGCAATTTGA+AGG | 0.509951 | 4_2:+4963337 | Msa0584860:CDS |
| GTCTGTTGGTAGCAATTACA+AGG | 0.520857 | 4_2:-4963947 | None:intergenic |
| ATGACTGTAGAGGAACGGAT+TGG | 0.522055 | 4_2:+4961712 | Msa0584860:CDS |
| AACGGATTGGGGCAGCAGAT+CGG | 0.529421 | 4_2:+4961725 | Msa0584860:CDS |
| TAAACTAAATCTGCCATTGG+TGG | 0.530780 | 4_2:-4961565 | None:intergenic |
| AGCGTTGCTGCGTGTGAGCT+GGG | 0.534499 | 4_2:+4961498 | Msa0584860:CDS |
| CCCAAAGAGTGCTGGGCGTG+AGG | 0.536510 | 4_2:+4960968 | Msa0584860:CDS |
| TACCAAGCCCAAAGAGTGCT+GGG | 0.538462 | 4_2:+4960961 | Msa0584860:CDS |
| GGTAAGGCTAGAGCAGCACT+TGG | 0.543948 | 4_2:+4963374 | Msa0584860:CDS |
| AAGCATGTTGAATACTTGGA+AGG | 0.544025 | 4_2:-4959670 | None:intergenic |
| GTCATCTCCCATGTAAGCTA+TGG | 0.545323 | 4_2:-4961939 | None:intergenic |
| GGCAGCAGATCGGAGAAAGA+TGG | 0.546425 | 4_2:+4961735 | Msa0584860:CDS |
| AGTTGAAGTTCTTCATGAGA+AGG | 0.548105 | 4_2:+4959609 | Msa0584860:CDS |
| ACAAAACAAATTATTAAGGA+AGG | 0.552128 | 4_2:+4959634 | Msa0584860:CDS |
| TAAATTTGAAGATACATGGC+AGG | 0.555459 | 4_2:+4960386 | Msa0584860:CDS |
| GCGGTTCAGCTTAATCAGAC+AGG | 0.561365 | 4_2:-4962038 | None:intergenic |
| ATGTTGTAGCCTTTCATAGG+TGG | 0.562072 | 4_2:-4963721 | None:intergenic |
| GAATTAGGATATGGAAAGGA+AGG | 0.562161 | 4_2:+4961520 | Msa0584860:CDS |
| CAGGGCGTGGTCTGAGAACA+CGG | 0.563793 | 4_2:+4960359 | Msa0584860:intron |
| GAAACTTACGTTGACCAGAT+CGG | 0.566358 | 4_2:-4959119 | None:intergenic |
| AACCGCTATGAAGAAGCTAT+AGG | 0.568196 | 4_2:+4962055 | Msa0584860:CDS |
| GCTAATTTATTTGGTAAACA+AGG | 0.569623 | 4_2:-4963986 | None:intergenic |
| GACTGGCTTGGGCATTGGGG+TGG | 0.573654 | 4_2:+4961453 | Msa0584860:CDS |
| CAAATTATTAAGGAAGGTCA+TGG | 0.574339 | 4_2:+4959640 | Msa0584860:CDS |
| AACCATTTCATACTGTTGCA+TGG | 0.576813 | 4_2:-4961797 | None:intergenic |
| TGGGCAGACAGATGCTGCCA+GGG | 0.576997 | 4_2:+4963394 | Msa0584860:CDS |
| ACAGAGAAGAAAGAAATGAC+TGG | 0.578132 | 4_2:+4961436 | Msa0584860:CDS |
| GACTGTAGAGGAACGGATTG+GGG | 0.579307 | 4_2:+4961714 | Msa0584860:CDS |
| AAAGAGTGCTGGGCGTGAGG+AGG | 0.582332 | 4_2:+4960971 | Msa0584860:CDS |
| TTGAAGGCTTTATTTAGGAG+AGG | 0.585733 | 4_2:+4963353 | Msa0584860:CDS |
| AGCATAAATTTGAAGATACA+TGG | 0.586003 | 4_2:+4960382 | Msa0584860:CDS |
| TCAGAGCTTGTCGAATTCAA+AGG | 0.586830 | 4_2:+4960921 | Msa0584860:intron |
| CATGTCAGTTACATGTCTGT+TGG | 0.589348 | 4_2:-4963961 | None:intergenic |
| CTGGGAATTAGGATATGGAA+AGG | 0.597900 | 4_2:+4961516 | Msa0584860:CDS |
| GCAGATCGGAGAAAGATGGA+TGG | 0.599142 | 4_2:+4961739 | Msa0584860:CDS |
| GCCGCCGTGTTAAGATGGCA+TGG | 0.599939 | 4_2:-4962016 | None:intergenic |
| GTTTCAGGAAAATAAACTAG+AGG | 0.610535 | 4_2:+4961771 | Msa0584860:CDS |
| TCAGGAAAATAAACTAGAGG+AGG | 0.614029 | 4_2:+4961774 | Msa0584860:CDS |
| AAGTACTGAATATGCAAAAG+GGG | 0.616531 | 4_2:+4959540 | Msa0584860:CDS |
| TATGTGCATCCACCTATGAA+AGG | 0.617546 | 4_2:+4963712 | Msa0584860:three_prime_UTR |
| AGCTATTTATCAAAAGCAGA+AGG | 0.618624 | 4_2:+4963499 | Msa0584860:CDS |
| GTCCTATAGCTTCTTCATAG+CGG | 0.623004 | 4_2:-4962057 | None:intergenic |
| GTAAGGCTAGAGCAGCACTT+GGG | 0.626696 | 4_2:+4963375 | Msa0584860:CDS |
| AAACTTGCAGGTATTAAGTG+AGG | 0.627657 | 4_2:+4963319 | Msa0584860:intron |
| AACAATAGTCGATGCAACAA+TGG | 0.631299 | 4_2:-4963689 | None:intergenic |
| AATGACTGGCTTGGGCATTG+GGG | 0.631535 | 4_2:+4961450 | Msa0584860:CDS |
| GTGATATGACTGTAGAGGAA+CGG | 0.631871 | 4_2:+4961707 | Msa0584860:CDS |
| AAATAAATAAACTTAAGAGA+AGG | 0.637247 | 4_2:-4964015 | None:intergenic |
| TCGCAGTGATATGACTGTAG+AGG | 0.641089 | 4_2:+4961702 | Msa0584860:CDS |
| GAATCCATGCCATCTTAACA+CGG | 0.645723 | 4_2:+4962012 | Msa0584860:CDS |
| GGAGCAACGACCAATTGAGA+TGG | 0.655756 | 4_2:+4960407 | Msa0584860:CDS |
| GGTGGCAAGCATGAAAGCTG+GGG | 0.672895 | 4_2:+4961471 | Msa0584860:CDS |
| TGTCAGGCCATAGCTTACAT+GGG | 0.675965 | 4_2:+4961932 | Msa0584860:intron |
| TCTCAACCACAATCAAAACC+AGG | 0.685386 | 4_2:+4959266 | Msa0584860:CDS |
| GGCTTGGTACGTGAATAGGT+AGG | 0.688324 | 4_2:-4960947 | None:intergenic |
| TTGGTACGTGAATAGGTAGG+CGG | 0.702304 | 4_2:-4960944 | None:intergenic |
| TCCATGCCATCTTAACACGG+CGG | 0.771881 | 4_2:+4962015 | Msa0584860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATAAAATTAAT+GGG | - | chr4_2:4959218-4959237 | None:intergenic | 0.0% |
| !! | AAAAAAAAATATAAAATTAA+TGG | - | chr4_2:4959219-4959238 | None:intergenic | 0.0% |
| !!! | TATTTATTTTAGTAATTTCA+TGG | + | chr4_2:4960667-4960686 | Msa0584860:intron | 10.0% |
| !!! | TAAAGAAATATTTTGATAAA+GGG | - | chr4_2:4962243-4962262 | None:intergenic | 10.0% |
| !! | CTATAATAAAATTATAATCA+TGG | + | chr4_2:4962580-4962599 | Msa0584860:intron | 10.0% |
| !! | TCTTGATAAAAGTTTATAAA+AGG | + | chr4_2:4960832-4960851 | Msa0584860:intron | 15.0% |
| !!! | CTAAAGAAATATTTTGATAA+AGG | - | chr4_2:4962244-4962263 | None:intergenic | 15.0% |
| !!! | TAAATTGTTATAGTATTTTC+TGG | + | chr4_2:4963231-4963250 | Msa0584860:intron | 15.0% |
| !! | ATAAATGGAAATTAATTACC+TGG | - | chr4_2:4959287-4959306 | None:intergenic | 20.0% |
| !! | GGTTACAAAACAAATTATTA+AGG | + | chr4_2:4959630-4959649 | Msa0584860:CDS | 20.0% |
| !! | ACAAAACAAATTATTAAGGA+AGG | + | chr4_2:4959634-4959653 | Msa0584860:CDS | 20.0% |
| !!! | AAATAATTTGAACTTGTTTG+TGG | + | chr4_2:4959847-4959866 | Msa0584860:intron | 20.0% |
| !!! | AATAATTTGAACTTGTTTGT+GGG | + | chr4_2:4959848-4959867 | Msa0584860:intron | 20.0% |
| !! | AACAGTTTCAAAAACTAAAT+TGG | - | chr4_2:4959985-4960004 | None:intergenic | 20.0% |
| !!! | AATTTAGTTTTTGAAACTGT+TGG | + | chr4_2:4959984-4960003 | Msa0584860:intron | 20.0% |
| !! | TTCAACAAGAGAAAATAAAA+AGG | - | chr4_2:4960292-4960311 | None:intergenic | 20.0% |
| !! | TTATAAACTGGTAATAGAAA+TGG | + | chr4_2:4960546-4960565 | Msa0584860:intron | 20.0% |
| !!! | AGAGTAAATTTTCATTTTAG+TGG | + | chr4_2:4960584-4960603 | Msa0584860:intron | 20.0% |
| !! | TAAAATAAATATACACTCAG+GGG | - | chr4_2:4960658-4960677 | None:intergenic | 20.0% |
| !! | CTAAAATAAATATACACTCA+GGG | - | chr4_2:4960659-4960678 | None:intergenic | 20.0% |
| !! | ACTAAAATAAATATACACTC+AGG | - | chr4_2:4960660-4960679 | None:intergenic | 20.0% |
| !!! | CAGAGATTTTTATGTAATTT+TGG | + | chr4_2:4960749-4960768 | Msa0584860:intron | 20.0% |
| !! | CTTGATAAAAGTTTATAAAG+AGG | + | chr4_2:4960833-4960852 | Msa0584860:intron | 20.0% |
| !! | TGATAAAAGTTTATAAAAGG+AGG | + | chr4_2:4961039-4961058 | Msa0584860:intron | 20.0% |
| !! | TACTATGTAAATAAGCATTT+CGG | + | chr4_2:4962128-4962147 | Msa0584860:intron | 20.0% |
| !!! | ATTGGTCTTTATTAATGTAA+GGG | - | chr4_2:4962211-4962230 | None:intergenic | 20.0% |
| !!! | ATTCCTTTTTATCTTATTGA+AGG | + | chr4_2:4962688-4962707 | Msa0584860:intron | 20.0% |
| !!! | TTCCTTTTTATCTTATTGAA+GGG | + | chr4_2:4962689-4962708 | Msa0584860:intron | 20.0% |
| !! | TAACAATTTACAAGTATGTT+TGG | - | chr4_2:4963221-4963240 | None:intergenic | 20.0% |
| !! | AAATGTGGTTATGAATTTTC+CGG | - | chr4_2:4959189-4959208 | None:intergenic | 25.0% |
| ! | ATTAATGGGAAAATGAAATG+TGG | - | chr4_2:4959204-4959223 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTCCAGCAACA+TGG | + | chr4_2:4959229-4959248 | Msa0584860:intron | 25.0% |
| !! | TTTTCTTGACCTACAAAATA+AGG | - | chr4_2:4959496-4959515 | None:intergenic | 25.0% |
| !!! | AAAGTACTGAATATGCAAAA+GGG | + | chr4_2:4959539-4959558 | Msa0584860:CDS | 25.0% |
| ! | ATTGAACGGATATATGTTTA+AGG | + | chr4_2:4959872-4959891 | Msa0584860:intron | 25.0% |
| !! | TGTTGTTGCTTATTGAAATT+TGG | + | chr4_2:4959907-4959926 | Msa0584860:intron | 25.0% |
| ! | TTGCTTATTGAAATTTGGAA+CGG | + | chr4_2:4959912-4959931 | Msa0584860:intron | 25.0% |
| ! | ACTAAATTGAAATACCAAAC+AGG | - | chr4_2:4960037-4960056 | None:intergenic | 25.0% |
| ! | AGTATCTGATATTCTCTTAT+AGG | + | chr4_2:4960054-4960073 | Msa0584860:intron | 25.0% |
| ! | AACAAAAGAAAATTTCCTCA+CGG | - | chr4_2:4960161-4960180 | None:intergenic | 25.0% |
| ! | ATTCATAATTATGACCTGTA+TGG | + | chr4_2:4960316-4960335 | Msa0584860:intron | 25.0% |
| ! | AGCATAAATTTGAAGATACA+TGG | + | chr4_2:4960382-4960401 | Msa0584860:CDS | 25.0% |
| !!! | ATGCTTGAAGTTTAAAGTTT+TGG | + | chr4_2:4960444-4960463 | Msa0584860:intron | 25.0% |
| ! | AAAGAAATCCAATTGATCAA+TGG | - | chr4_2:4960481-4960500 | None:intergenic | 25.0% |
| ! | ACAATTTAGAGAATAGATGT+AGG | - | chr4_2:4960514-4960533 | None:intergenic | 25.0% |
| !! | TGATTTTCGTGTTTATAAAC+TGG | + | chr4_2:4960534-4960553 | Msa0584860:intron | 25.0% |
| ! | ACTATCAAAAGAGATATTTG+AGG | + | chr4_2:4960699-4960718 | Msa0584860:intron | 25.0% |
| !!! | ATGTAATTTTGGTACATTCA+AGG | + | chr4_2:4960760-4960779 | Msa0584860:intron | 25.0% |
| ! | GATAAAAGTTTATAAAGAGG+AGG | + | chr4_2:4960836-4960855 | Msa0584860:intron | 25.0% |
| ! | GATACAAGACTAATATTTAC+AGG | - | chr4_2:4961187-4961206 | None:intergenic | 25.0% |
| !!! | TCTTTAACAGACTTGTTATT+TGG | + | chr4_2:4961393-4961412 | Msa0584860:intron | 25.0% |
| !! | GTTTTCATTAAATTGTTGCA+TGG | + | chr4_2:4961629-4961648 | Msa0584860:intron | 25.0% |
| ! | TTATAGTGAGTAAAATTCAC+AGG | + | chr4_2:4961672-4961691 | Msa0584860:intron | 25.0% |
| ! | TATAGTGAGTAAAATTCACA+GGG | + | chr4_2:4961673-4961692 | Msa0584860:intron | 25.0% |
| !! | AATTGCTGAAGAAAATTTTG+AGG | - | chr4_2:4962155-4962174 | None:intergenic | 25.0% |
| !!! | TTGCTATTTCACAAATTTGA+GGG | - | chr4_2:4962182-4962201 | None:intergenic | 25.0% |
| !!! | TTTGCTATTTCACAAATTTG+AGG | - | chr4_2:4962183-4962202 | None:intergenic | 25.0% |
| !!! | GATTGGTCTTTATTAATGTA+AGG | - | chr4_2:4962212-4962231 | None:intergenic | 25.0% |
| ! | TGGTAGATAATCAAATTTGA+AGG | - | chr4_2:4962344-4962363 | None:intergenic | 25.0% |
| ! | CAAATTTGATTATCTACCAT+TGG | + | chr4_2:4962345-4962364 | Msa0584860:intron | 25.0% |
| !!! | TAAATTGTTTTACCGAGTTT+TGG | + | chr4_2:4962547-4962566 | Msa0584860:intron | 25.0% |
| !!! | AAATTGTTTTACCGAGTTTT+GGG | + | chr4_2:4962548-4962567 | Msa0584860:intron | 25.0% |
| ! | TTCCCTTCAATAAGATAAAA+AGG | - | chr4_2:4962694-4962713 | None:intergenic | 25.0% |
| ! | ATTTCCCTTGACTAAAAATA+TGG | - | chr4_2:4962817-4962836 | None:intergenic | 25.0% |
| ! | GAAAAACTTGAATCAAACAT+GGG | - | chr4_2:4962973-4962992 | None:intergenic | 25.0% |
| ! | AGAAAAACTTGAATCAAACA+TGG | - | chr4_2:4962974-4962993 | None:intergenic | 25.0% |
| ! | ACTAAATAAAAGTGAGAATG+AGG | - | chr4_2:4963136-4963155 | None:intergenic | 25.0% |
| ! | AGATATAGAATCATGTTACA+AGG | - | chr4_2:4963266-4963285 | None:intergenic | 25.0% |
| ! | GAGATCTATAAAGGAATATT+TGG | + | chr4_2:4963521-4963540 | Msa0584860:CDS | 25.0% |
| !! | ATTTTATCTATGCTTGATGT+TGG | + | chr4_2:4963778-4963797 | Msa0584860:three_prime_UTR | 25.0% |
| !! | TTTGTTCATAAGCATTTTGT+GGG | + | chr4_2:4963883-4963902 | Msa0584860:three_prime_UTR | 25.0% |
| ! | GCTAATTTATTTGGTAAACA+AGG | - | chr4_2:4963989-4964008 | None:intergenic | 25.0% |
| !!! | TAATTACCTGGTTTTGATTG+TGG | - | chr4_2:4959275-4959294 | None:intergenic | 30.0% |
| GTATCACATGAGTGAATAAA+TGG | - | chr4_2:4959302-4959321 | None:intergenic | 30.0% | |
| TCGAATTTCATGTATGATTG+AGG | + | chr4_2:4959467-4959486 | Msa0584860:intron | 30.0% | |
| !!! | TTGAGGAAACCTTATTTTGT+AGG | + | chr4_2:4959484-4959503 | Msa0584860:intron | 30.0% |
| !! | GAAAGTACTGAATATGCAAA+AGG | + | chr4_2:4959538-4959557 | Msa0584860:CDS | 30.0% |
| !! | AAGTACTGAATATGCAAAAG+GGG | + | chr4_2:4959540-4959559 | Msa0584860:CDS | 30.0% |
| ! | TCAACTTCAGAATCAACTTT+TGG | - | chr4_2:4959595-4959614 | None:intergenic | 30.0% |
| CAAATTATTAAGGAAGGTCA+TGG | + | chr4_2:4959640-4959659 | Msa0584860:CDS | 30.0% | |
| ! | ACAAAAGCATGTTGAATACT+TGG | - | chr4_2:4959677-4959696 | None:intergenic | 30.0% |
| ! | ATTCAACATGCTTTTGTAAG+TGG | + | chr4_2:4959680-4959699 | Msa0584860:intron | 30.0% |
| GTTTCATGCTAGTAGAAAAA+AGG | + | chr4_2:4959783-4959802 | Msa0584860:intron | 30.0% | |
| TATAGGAACTAATGTGTTCA+AGG | + | chr4_2:4960071-4960090 | Msa0584860:intron | 30.0% | |
| ! | TTTGAATGACCCAAATGTTT+TGG | + | chr4_2:4960131-4960150 | Msa0584860:intron | 30.0% |
| !! | TCTTTTGTTTAGACTGAATG+TGG | + | chr4_2:4960172-4960191 | Msa0584860:intron | 30.0% |
| !! | CTTTTGTTTAGACTGAATGT+GGG | + | chr4_2:4960173-4960192 | Msa0584860:intron | 30.0% |
| ATTATGACCTGTATGGTTTA+TGG | + | chr4_2:4960323-4960342 | Msa0584860:intron | 30.0% | |
| TAAATTTGAAGATACATGGC+AGG | + | chr4_2:4960386-4960405 | Msa0584860:CDS | 30.0% | |
| TTTCCTATTACCATCTCAAT+TGG | - | chr4_2:4960420-4960439 | None:intergenic | 30.0% | |
| ATTGAGATGGTAATAGGAAA+AGG | + | chr4_2:4960420-4960439 | Msa0584860:CDS | 30.0% | |
| TGATACCATGTTGAAATTTG+GGG | - | chr4_2:4960904-4960923 | None:intergenic | 30.0% | |
| CTGATACCATGTTGAAATTT+GGG | - | chr4_2:4960905-4960924 | None:intergenic | 30.0% | |
| TCTGATACCATGTTGAAATT+TGG | - | chr4_2:4960906-4960925 | None:intergenic | 30.0% | |
| TGTCATTGTGTTGAAATTTG+GGG | - | chr4_2:4961106-4961125 | None:intergenic | 30.0% | |
| CTGTCATTGTGTTGAAATTT+GGG | - | chr4_2:4961107-4961126 | None:intergenic | 30.0% | |
| !!! | GACTTGTTATTTGGTTTTGA+TGG | + | chr4_2:4961402-4961421 | Msa0584860:intron | 30.0% |
| TCATAAACTAAATCTGCCAT+TGG | - | chr4_2:4961571-4961590 | None:intergenic | 30.0% | |
| ATTAAATTGTTGCATGGTCA+CGG | + | chr4_2:4961635-4961654 | Msa0584860:intron | 30.0% | |
| GTTTCAGGAAAATAAACTAG+AGG | + | chr4_2:4961771-4961790 | Msa0584860:CDS | 30.0% | |
| !! | GTTTGCTAAGTTGATTATCT+TGG | + | chr4_2:4961905-4961924 | Msa0584860:intron | 30.0% |
| TCAATATGTAGGTCTTTCAT+CGG | - | chr4_2:4962283-4962302 | None:intergenic | 30.0% | |
| GAGTATAGAAGTCAATATGT+AGG | - | chr4_2:4962294-4962313 | None:intergenic | 30.0% | |
| ! | TTAAGTCCTTGAAGTTCTAA+GGG | - | chr4_2:4962424-4962443 | None:intergenic | 30.0% |
| TTTAAGTCCTTGAAGTTCTA+AGG | - | chr4_2:4962425-4962444 | None:intergenic | 30.0% | |
| !!! | TCTTGCCATATTTTTAGTCA+AGG | + | chr4_2:4962809-4962828 | Msa0584860:intron | 30.0% |
| !!! | CTTGCCATATTTTTAGTCAA+GGG | + | chr4_2:4962810-4962829 | Msa0584860:intron | 30.0% |
| ! | ATTTTTACCAAAGTGAGCTT+TGG | + | chr4_2:4962936-4962955 | Msa0584860:intron | 30.0% |
| TTAAAATTTCTGCGATTTCC+TGG | + | chr4_2:4962996-4963015 | Msa0584860:intron | 30.0% | |
| TAAAATTTCTGCGATTTCCT+GGG | + | chr4_2:4962997-4963016 | Msa0584860:intron | 30.0% | |
| AATGAGTGAATTATATCCCT+GGG | - | chr4_2:4963024-4963043 | None:intergenic | 30.0% | |
| AAATGAGTGAATTATATCCC+TGG | - | chr4_2:4963025-4963044 | None:intergenic | 30.0% | |
| TTATCATGGGAATGAAAAAG+CGG | - | chr4_2:4963051-4963070 | None:intergenic | 30.0% | |
| AATGTCTCACTCTTTATCAT+GGG | - | chr4_2:4963064-4963083 | None:intergenic | 30.0% | |
| AAATGTCTCACTCTTTATCA+TGG | - | chr4_2:4963065-4963084 | None:intergenic | 30.0% | |
| TGAAAAGTTATAGTTGGTTG+AGG | - | chr4_2:4963109-4963128 | None:intergenic | 30.0% | |
| GGTAAGTGAAAAGTTATAGT+TGG | - | chr4_2:4963115-4963134 | None:intergenic | 30.0% | |
| !! | GCAATTTGAAGGCTTTATTT+AGG | + | chr4_2:4963348-4963367 | Msa0584860:CDS | 30.0% |
| AGCTATTTATCAAAAGCAGA+AGG | + | chr4_2:4963499-4963518 | Msa0584860:CDS | 30.0% | |
| ! | GGAATTGGTTCATATTTGTT+TGG | + | chr4_2:4963573-4963592 | Msa0584860:CDS | 30.0% |
| !!! | CATCTTTGTGCTTTTTTTCA+CGG | - | chr4_2:4963643-4963662 | None:intergenic | 30.0% |
| AAAATGTTGTAGCCTTTCAT+AGG | - | chr4_2:4963727-4963746 | None:intergenic | 30.0% | |
| ! | GTTTGTTCATAAGCATTTTG+TGG | + | chr4_2:4963882-4963901 | Msa0584860:three_prime_UTR | 30.0% |
| AGGTTCAAGGCTAATTTATT+TGG | - | chr4_2:4963998-4964017 | None:intergenic | 30.0% | |
| CCGGAGAAACAAAAATCTAA+GGG | - | chr4_2:4959170-4959189 | None:intergenic | 35.0% | |
| !! | CCCTTAGATTTTTGTTTCTC+CGG | + | chr4_2:4959167-4959186 | Msa0584860:intron | 35.0% |
| TCCGGAGAAACAAAAATCTA+AGG | - | chr4_2:4959171-4959190 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTCCAGCAACATGG+AGG | + | chr4_2:4959232-4959251 | Msa0584860:intron | 35.0% |
| GGACTACTCAATAATTCTTC+AGG | - | chr4_2:4959571-4959590 | None:intergenic | 35.0% | |
| ! | ACTTCAGAATCAACTTTTGG+AGG | - | chr4_2:4959592-4959611 | None:intergenic | 35.0% |
| AGTTGAAGTTCTTCATGAGA+AGG | + | chr4_2:4959609-4959628 | Msa0584860:CDS | 35.0% | |
| AAGCATGTTGAATACTTGGA+AGG | - | chr4_2:4959673-4959692 | None:intergenic | 35.0% | |
| ! | AGGTCTAGAATTGTTGAATG+TGG | + | chr4_2:4959803-4959822 | Msa0584860:intron | 35.0% |
| ACTTGTTTGTGGGAATTGAA+CGG | + | chr4_2:4959858-4959877 | Msa0584860:intron | 35.0% | |
| CACGGTAAACCAAAACATTT+GGG | - | chr4_2:4960143-4960162 | None:intergenic | 35.0% | |
| TCACGGTAAACCAAAACATT+TGG | - | chr4_2:4960144-4960163 | None:intergenic | 35.0% | |
| !!! | AAATGTTTTGGTTTACCGTG+AGG | + | chr4_2:4960143-4960162 | Msa0584860:intron | 35.0% |
| ACGTGAAGCAAAACTGTATT+AGG | + | chr4_2:4960204-4960223 | Msa0584860:intron | 35.0% | |
| TCTTGTGTCCATTGATCAAT+TGG | + | chr4_2:4960470-4960489 | Msa0584860:intron | 35.0% | |
| TAGTGGCTTAATGTGTAAGA+CGG | + | chr4_2:4960601-4960620 | Msa0584860:intron | 35.0% | |
| ATTCAAGGACTACAGTGTAT+TGG | + | chr4_2:4960775-4960794 | Msa0584860:intron | 35.0% | |
| TTCAAGGACTACAGTGTATT+GGG | + | chr4_2:4960776-4960795 | Msa0584860:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr4_2:4960880-4960899 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr4_2:4960880-4960899 | None:intergenic | 35.0% | |
| GCTGTCATTGTGTTGAAATT+TGG | - | chr4_2:4961108-4961127 | None:intergenic | 35.0% | |
| ACAGAGAAGAAAGAAATGAC+TGG | + | chr4_2:4961436-4961455 | Msa0584860:CDS | 35.0% | |
| !! | AAGAAAGAAATGACTGGCTT+GGG | + | chr4_2:4961442-4961461 | Msa0584860:CDS | 35.0% |
| GAATTAGGATATGGAAAGGA+AGG | + | chr4_2:4961520-4961539 | Msa0584860:CDS | 35.0% | |
| ! | TTTTCCAAATGTTCCACCAA+TGG | + | chr4_2:4961552-4961571 | Msa0584860:CDS | 35.0% |
| TAAACTAAATCTGCCATTGG+TGG | - | chr4_2:4961568-4961587 | None:intergenic | 35.0% | |
| GTTTATGAAGTTGAGCTCAT+TGG | + | chr4_2:4961583-4961602 | Msa0584860:CDS | 35.0% | |
| TCAGGAAAATAAACTAGAGG+AGG | + | chr4_2:4961774-4961793 | Msa0584860:CDS | 35.0% | |
| AACCATTTCATACTGTTGCA+TGG | - | chr4_2:4961800-4961819 | None:intergenic | 35.0% | |
| TGATTATCTTGGTTCATGTC+AGG | + | chr4_2:4961916-4961935 | Msa0584860:intron | 35.0% | |
| ACTTCATGTTCCAGTTGTTT+GGG | + | chr4_2:4961960-4961979 | Msa0584860:CDS | 35.0% | |
| GATAAAGGGACGAAATTGAT+TGG | - | chr4_2:4962229-4962248 | None:intergenic | 35.0% | |
| TATCTACCATTGGAGTTCAA+TGG | + | chr4_2:4962355-4962374 | Msa0584860:intron | 35.0% | |
| TTTAGTCCATTGAACTCCAA+TGG | - | chr4_2:4962364-4962383 | None:intergenic | 35.0% | |
| ! | TCAAAGTCATGCTGTTTGAT+TGG | + | chr4_2:4962478-4962497 | Msa0584860:intron | 35.0% |
| TATGGCAAGATATGCTTAGT+AGG | - | chr4_2:4962799-4962818 | None:intergenic | 35.0% | |
| TTACAATCCAAAGCTCACTT+TGG | - | chr4_2:4962946-4962965 | None:intergenic | 35.0% | |
| TAAAGAGTGAGACATTTCCA+TGG | + | chr4_2:4963068-4963087 | Msa0584860:intron | 35.0% | |
| AAAGAGTGAGACATTTCCAT+GGG | + | chr4_2:4963069-4963088 | Msa0584860:intron | 35.0% | |
| AAAGTTATAGTTGGTTGAGG+AGG | - | chr4_2:4963106-4963125 | None:intergenic | 35.0% | |
| GTTTCAACAATGACTTCTGT+TGG | - | chr4_2:4963303-4963322 | None:intergenic | 35.0% | |
| AAGTCATTGTTGAAACTTGC+AGG | + | chr4_2:4963307-4963326 | Msa0584860:intron | 35.0% | |
| AAACTTGCAGGTATTAAGTG+AGG | + | chr4_2:4963319-4963338 | Msa0584860:intron | 35.0% | |
| !! | TTGAAGGCTTTATTTAGGAG+AGG | + | chr4_2:4963353-4963372 | Msa0584860:CDS | 35.0% |
| CTTGCAATTGCTTTATCTTC+AGG | - | chr4_2:4963449-4963468 | None:intergenic | 35.0% | |
| AAGCAGAAGGAGATCTATAA+AGG | + | chr4_2:4963512-4963531 | Msa0584860:CDS | 35.0% | |
| ! | ATGAACCAATTCCTTTTCTG+CGG | - | chr4_2:4963566-4963585 | None:intergenic | 35.0% |
| ! | TTTTTCACGGTTGAAAAGTG+TGG | - | chr4_2:4963630-4963649 | None:intergenic | 35.0% |
| AACAATAGTCGATGCAACAA+TGG | - | chr4_2:4963692-4963711 | None:intergenic | 35.0% | |
| ! | TACAACATTTTGAGCTACTG+AGG | + | chr4_2:4963736-4963755 | Msa0584860:three_prime_UTR | 35.0% |
| TGTCAAACACGATTACTCTA+TGG | - | chr4_2:4963832-4963851 | None:intergenic | 35.0% | |
| TGGTAGCAATTACAAGGTTA+GGG | - | chr4_2:4963944-4963963 | None:intergenic | 35.0% | |
| ! | TTGGTAGCAATTACAAGGTT+AGG | - | chr4_2:4963945-4963964 | None:intergenic | 35.0% |
| GAAACTTACGTTGACCAGAT+CGG | - | chr4_2:4959122-4959141 | None:intergenic | 40.0% | |
| TCTAAGGGAGAGAGAAATTG+AGG | - | chr4_2:4959155-4959174 | None:intergenic | 40.0% | |
| TCTCAACCACAATCAAAACC+AGG | + | chr4_2:4959266-4959285 | Msa0584860:CDS | 40.0% | |
| ! | GCATCTTTGATCAGAAGTGT+TGG | + | chr4_2:4959423-4959442 | Msa0584860:intron | 40.0% |
| AGAGCTCATAAGAAGAGTAG+AGG | - | chr4_2:4960258-4960277 | None:intergenic | 40.0% | |
| ATGACCTGTATGGTTTATGG+TGG | + | chr4_2:4960326-4960345 | Msa0584860:intron | 40.0% | |
| ACTACCACCATAAACCATAC+AGG | - | chr4_2:4960333-4960352 | None:intergenic | 40.0% | |
| TTATGGTGGTAGTCCATTAC+AGG | + | chr4_2:4960340-4960359 | Msa0584860:intron | 40.0% | |
| TATGGTGGTAGTCCATTACA+GGG | + | chr4_2:4960341-4960360 | Msa0584860:intron | 40.0% | |
| CGACCAATTGAGATGGTAAT+AGG | + | chr4_2:4960414-4960433 | Msa0584860:CDS | 40.0% | |
| ATTTGAGGACCAAACTCACT+AGG | + | chr4_2:4960714-4960733 | Msa0584860:intron | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr4_2:4960878-4960897 | Msa0584860:intron | 40.0% |
| TTAGGCCCCAAATTTCAACA+TGG | + | chr4_2:4960896-4960915 | Msa0584860:intron | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+AGG | + | chr4_2:4960921-4960940 | Msa0584860:intron | 40.0% | |
| TTTGTCCTTCAATGCGTCAA+GGG | - | chr4_2:4961130-4961149 | None:intergenic | 40.0% | |
| ! | TTTTGTCCTTCAATGCGTCA+AGG | - | chr4_2:4961131-4961150 | None:intergenic | 40.0% |
| GACGCATTGAAGGACAAAAA+TGG | + | chr4_2:4961132-4961151 | Msa0584860:intron | 40.0% | |
| ! | TGTCATTTGCCAGAACTCAA+TGG | - | chr4_2:4961214-4961233 | None:intergenic | 40.0% |
| ! | ATTGAGTTCTGGCAAATGAC+AGG | + | chr4_2:4961213-4961232 | Msa0584860:intron | 40.0% |
| ! | TTGAGTTCTGGCAAATGACA+GGG | + | chr4_2:4961214-4961233 | Msa0584860:intron | 40.0% |
| ! | TGTCATTTGCCAGAACTCAT+TGG | - | chr4_2:4961242-4961261 | None:intergenic | 40.0% |
| ! | AATGAGTTCTGGCAAATGAC+AGG | + | chr4_2:4961241-4961260 | Msa0584860:intron | 40.0% |
| ! | ATGAGTTCTGGCAAATGACA+GGG | + | chr4_2:4961242-4961261 | Msa0584860:intron | 40.0% |
| TTATGACATCTAGCGTAGTG+TGG | + | chr4_2:4961333-4961352 | Msa0584860:intron | 40.0% | |
| ! | GAAGAAAGAAATGACTGGCT+TGG | + | chr4_2:4961441-4961460 | Msa0584860:CDS | 40.0% |
| CTGGGAATTAGGATATGGAA+AGG | + | chr4_2:4961516-4961535 | Msa0584860:CDS | 40.0% | |
| GTGATATGACTGTAGAGGAA+CGG | + | chr4_2:4961707-4961726 | Msa0584860:CDS | 40.0% | |
| GGATGGAAATGTTCTGTTTC+AGG | + | chr4_2:4961756-4961775 | Msa0584860:CDS | 40.0% | |
| GACTTCATGTTCCAGTTGTT+TGG | + | chr4_2:4961959-4961978 | Msa0584860:CDS | 40.0% | |
| ! | TCCAGTTGTTTGGGAAGTAT+AGG | + | chr4_2:4961969-4961988 | Msa0584860:CDS | 40.0% |
| ! | CCAGTTGTTTGGGAAGTATA+GGG | + | chr4_2:4961970-4961989 | Msa0584860:CDS | 40.0% |
| ! | GTTTGGGAAGTATAGGGATA+TGG | + | chr4_2:4961976-4961995 | Msa0584860:CDS | 40.0% |
| GAATCCATGCCATCTTAACA+CGG | + | chr4_2:4962012-4962031 | Msa0584860:CDS | 40.0% | |
| AACCGCTATGAAGAAGCTAT+AGG | + | chr4_2:4962055-4962074 | Msa0584860:CDS | 40.0% | |
| GTCCTATAGCTTCTTCATAG+CGG | - | chr4_2:4962060-4962079 | None:intergenic | 40.0% | |
| !!! | AGGTCTTTCATCGGTTTTGA+TGG | - | chr4_2:4962274-4962293 | None:intergenic | 40.0% |
| AGTAGACTCAACCCAAAACT+CGG | - | chr4_2:4962562-4962581 | None:intergenic | 40.0% | |
| !! | TGCTCACACTTTTTGTCGTA+AGG | + | chr4_2:4962665-4962684 | Msa0584860:intron | 40.0% |
| CTGTCTAAGAATGCTTTCAC+TGG | - | chr4_2:4962760-4962779 | None:intergenic | 40.0% | |
| TGAGGATGAGAGCAATTTGA+AGG | + | chr4_2:4963337-4963356 | Msa0584860:CDS | 40.0% | |
| !! | GGCTTTATTTAGGAGAGGTA+AGG | + | chr4_2:4963358-4963377 | Msa0584860:CDS | 40.0% |
| !! | CGCTTTTAGAAAATCTTCCC+TGG | - | chr4_2:4963414-4963433 | None:intergenic | 40.0% |
| GGTTCATATTTGTTTGGCAG+TGG | + | chr4_2:4963579-4963598 | Msa0584860:CDS | 40.0% | |
| CATATTTGTTTGGCAGTGGT+TGG | + | chr4_2:4963583-4963602 | Msa0584860:CDS | 40.0% | |
| TATGTGCATCCACCTATGAA+AGG | + | chr4_2:4963712-4963731 | Msa0584860:three_prime_UTR | 40.0% | |
| ATGTTGTAGCCTTTCATAGG+TGG | - | chr4_2:4963724-4963743 | None:intergenic | 40.0% | |
| !! | GTCTGTTGGTAGCAATTACA+AGG | - | chr4_2:4963950-4963969 | None:intergenic | 40.0% |
| CATGTCAGTTACATGTCTGT+TGG | - | chr4_2:4963964-4963983 | None:intergenic | 40.0% | |
| !! | GATCGGTTTTTGTTCGTGTG+TGG | - | chr4_2:4959105-4959124 | None:intergenic | 45.0% |
| CACACGAACAAAAACCGATC+TGG | + | chr4_2:4959105-4959124 | Msa0584860:five_prime_UTR | 45.0% | |
| TTGAACTTCCTCCATGTTGC+TGG | - | chr4_2:4959243-4959262 | None:intergenic | 45.0% | |
| TGTTGCGTCAGTGTTGTATC+TGG | - | chr4_2:4959330-4959349 | None:intergenic | 45.0% | |
| ATCAAAGATGCGTCTGGTGT+CGG | - | chr4_2:4959414-4959433 | None:intergenic | 45.0% | |
| CTTCTGATCAAAGATGCGTC+TGG | - | chr4_2:4959420-4959439 | None:intergenic | 45.0% | |
| !! | GAAGTGTTGGTGTTACAGAG+AGG | + | chr4_2:4959436-4959455 | Msa0584860:intron | 45.0% |
| AGTCGTGTATCAGTCCTGTT+TGG | + | chr4_2:4960020-4960039 | Msa0584860:intron | 45.0% | |
| GCATCTTGTCCTAGTGAGTT+TGG | - | chr4_2:4960726-4960745 | None:intergenic | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | + | chr4_2:4960798-4960817 | Msa0584860:intron | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | - | chr4_2:4960807-4960826 | None:intergenic | 45.0% | |
| GAGTCTCATCTATCCGATGT+GGG | - | chr4_2:4960814-4960833 | None:intergenic | 45.0% | |
| AGAGTCTCATCTATCCGATG+TGG | - | chr4_2:4960815-4960834 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr4_2:4960871-4960890 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr4_2:4960868-4960887 | Msa0584860:intron | 45.0% |
| TTGGTACGTGAATAGGTAGG+CGG | - | chr4_2:4960947-4960966 | None:intergenic | 45.0% | |
| ! | TTTGGGCTTGGTACGTGAAT+AGG | - | chr4_2:4960954-4960973 | None:intergenic | 45.0% |
| GAAAAACCCAAGTCCCACAT+CGG | + | chr4_2:4960798-4960817 | Msa0584860:intron | 45.0% | |
| ATCTATCCGATGTGGGACTT+GGG | - | chr4_2:4960807-4960826 | None:intergenic | 45.0% | |
| GAGTCTCATCTATCCGATGT+GGG | - | chr4_2:4960814-4960833 | None:intergenic | 45.0% | |
| AGAGTCTCATCTATCCGATG+TGG | - | chr4_2:4960815-4960834 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr4_2:4960871-4960890 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr4_2:4960868-4960887 | Msa0584860:intron | 45.0% |
| GTATCCATGCCATTGAGTTC+TGG | + | chr4_2:4961202-4961221 | Msa0584860:intron | 45.0% | |
| TTTGCCAGAACTCAATGGCA+TGG | - | chr4_2:4961209-4961228 | None:intergenic | 45.0% | |
| !! | AAATGACTGGCTTGGGCATT+GGG | + | chr4_2:4961449-4961468 | Msa0584860:CDS | 45.0% |
| GTGAGCTGGGAATTAGGATA+TGG | + | chr4_2:4961511-4961530 | Msa0584860:CDS | 45.0% | |
| TCTGCCATTGGTGGAACATT+TGG | - | chr4_2:4961559-4961578 | None:intergenic | 45.0% | |
| TCGCAGTGATATGACTGTAG+AGG | + | chr4_2:4961702-4961721 | Msa0584860:CDS | 45.0% | |
| ATGACTGTAGAGGAACGGAT+TGG | + | chr4_2:4961712-4961731 | Msa0584860:CDS | 45.0% | |
| ! | TGACTGTAGAGGAACGGATT+GGG | + | chr4_2:4961713-4961732 | Msa0584860:CDS | 45.0% |
| GGCCATGCAACAGTATGAAA+TGG | + | chr4_2:4961795-4961814 | Msa0584860:CDS | 45.0% | |
| ATGTCAGGCCATAGCTTACA+TGG | + | chr4_2:4961931-4961950 | Msa0584860:intron | 45.0% | |
| TGTCAGGCCATAGCTTACAT+GGG | + | chr4_2:4961932-4961951 | Msa0584860:intron | 45.0% | |
| GTCATCTCCCATGTAAGCTA+TGG | - | chr4_2:4961942-4961961 | None:intergenic | 45.0% | |
| CCCTATACTTCCCAAACAAC+TGG | - | chr4_2:4961973-4961992 | None:intergenic | 45.0% | |
| GAAGTATAGGGATATGGCTC+TGG | + | chr4_2:4961982-4962001 | Msa0584860:CDS | 45.0% | |
| TACCGACCCTTAGAACTTCA+AGG | + | chr4_2:4962415-4962434 | Msa0584860:intron | 45.0% | |
| !! | GTCCTTGAAGTTCTAAGGGT+CGG | - | chr4_2:4962420-4962439 | None:intergenic | 45.0% |
| AGCATGAGCGCACAATATTG+AGG | + | chr4_2:4962610-4962629 | Msa0584860:intron | 45.0% | |
| GCATTCTTAGACAGAAGCTG+TGG | + | chr4_2:4962766-4962785 | Msa0584860:intron | 45.0% | |
| GGAGGTAATTTCTACTCCCA+TGG | - | chr4_2:4963088-4963107 | None:intergenic | 45.0% | |
| ! | CAATTCCTTTTCTGCGGTAC+TGG | - | chr4_2:4963560-4963579 | None:intergenic | 45.0% |
| CAGTACCGCAGAAAAGGAAT+TGG | + | chr4_2:4963558-4963577 | Msa0584860:CDS | 45.0% | |
| GGAACGGCTTTCGTTGTATC+TGG | + | chr4_2:4959928-4959947 | Msa0584860:intron | 50.0% | |
| GGAGCAACGACCAATTGAGA+TGG | + | chr4_2:4960407-4960426 | Msa0584860:CDS | 50.0% | |
| CATCTATCCGATGTGGGACT+TGG | - | chr4_2:4960808-4960827 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr4_2:4960866-4960885 | None:intergenic | 50.0% |
| ! | GGCTTGGTACGTGAATAGGT+AGG | - | chr4_2:4960950-4960969 | None:intergenic | 50.0% |
| !! | TACCAAGCCCAAAGAGTGCT+GGG | + | chr4_2:4960961-4960980 | Msa0584860:CDS | 50.0% |
| CATCTATCCGATGTGGGACT+TGG | - | chr4_2:4960808-4960827 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr4_2:4960866-4960885 | None:intergenic | 50.0% |
| !! | GAAATGACTGGCTTGGGCAT+TGG | + | chr4_2:4961448-4961467 | Msa0584860:CDS | 50.0% |
| !! | AATGACTGGCTTGGGCATTG+GGG | + | chr4_2:4961450-4961469 | Msa0584860:CDS | 50.0% |
| !! | GACTGTAGAGGAACGGATTG+GGG | + | chr4_2:4961714-4961733 | Msa0584860:CDS | 50.0% |
| GCAGATCGGAGAAAGATGGA+TGG | + | chr4_2:4961739-4961758 | Msa0584860:CDS | 50.0% | |
| TCCATGCCATCTTAACACGG+CGG | + | chr4_2:4962015-4962034 | Msa0584860:CDS | 50.0% | |
| GCGGTTCAGCTTAATCAGAC+AGG | - | chr4_2:4962041-4962060 | None:intergenic | 50.0% | |
| GAATTATATCCCTGGGACCC+AGG | - | chr4_2:4963017-4963036 | None:intergenic | 50.0% | |
| GTAAGGCTAGAGCAGCACTT+GGG | + | chr4_2:4963375-4963394 | Msa0584860:CDS | 50.0% | |
| !!! | CTTTTCTGCGGTACTGGTTG+AGG | - | chr4_2:4963554-4963573 | None:intergenic | 50.0% |
| CTCAACCAGTACCGCAGAAA+AGG | + | chr4_2:4963552-4963571 | Msa0584860:CDS | 50.0% | |
| TGGTAGTCCATTACAGGGCG+TGG | + | chr4_2:4960346-4960365 | Msa0584860:intron | 55.0% | |
| TCTCAGACCACGCCCTGTAA+TGG | - | chr4_2:4960356-4960375 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr4_2:4960858-4960877 | Msa0584860:intron | 55.0% | |
| ! | GTACCAAGCCCAAAGAGTGC+TGG | + | chr4_2:4960960-4960979 | Msa0584860:CDS | 55.0% |
| ! | TGGGCGTGAGGAGGTGTATT+GGG | + | chr4_2:4960980-4960999 | Msa0584860:intron | 55.0% |
| GCACTCCTCACCTTACAAGC+CGG | + | chr4_2:4960858-4960877 | Msa0584860:intron | 55.0% | |
| GACAGCCCTTGACGCATTGA+AGG | + | chr4_2:4961122-4961141 | Msa0584860:intron | 55.0% | |
| ! | GACAGGGTGCCAATGAGTTC+TGG | + | chr4_2:4961230-4961249 | Msa0584860:intron | 55.0% |
| GGGTGGCAAGCATGAAAGCT+GGG | + | chr4_2:4961470-4961489 | Msa0584860:CDS | 55.0% | |
| GGTGGCAAGCATGAAAGCTG+GGG | + | chr4_2:4961471-4961490 | Msa0584860:CDS | 55.0% | |
| CTGCGTGTGAGCTGGGAATT+AGG | + | chr4_2:4961505-4961524 | Msa0584860:CDS | 55.0% | |
| !! | AACGGATTGGGGCAGCAGAT+CGG | + | chr4_2:4961725-4961744 | Msa0584860:CDS | 55.0% |
| GGCAGCAGATCGGAGAAAGA+TGG | + | chr4_2:4961735-4961754 | Msa0584860:CDS | 55.0% | |
| GGTAAGGCTAGAGCAGCACT+TGG | + | chr4_2:4963374-4963393 | Msa0584860:CDS | 55.0% | |
| !! | TGCGGTACTGGTTGAGGTCT+TGG | - | chr4_2:4963548-4963567 | None:intergenic | 55.0% |
| CAGGGCGTGGTCTGAGAACA+CGG | + | chr4_2:4960359-4960378 | Msa0584860:intron | 60.0% | |
| CCTCACGCCCAGCACTCTTT+GGG | - | chr4_2:4960971-4960990 | None:intergenic | 60.0% | |
| TCCTCACGCCCAGCACTCTT+TGG | - | chr4_2:4960972-4960991 | None:intergenic | 60.0% | |
| !! | AAAGAGTGCTGGGCGTGAGG+AGG | + | chr4_2:4960971-4960990 | Msa0584860:CDS | 60.0% |
| ! | CTGGGCGTGAGGAGGTGTAT+TGG | + | chr4_2:4960979-4960998 | Msa0584860:intron | 60.0% |
| GGGGTGGCAAGCATGAAAGC+TGG | + | chr4_2:4961469-4961488 | Msa0584860:CDS | 60.0% | |
| AGCGTTGCTGCGTGTGAGCT+GGG | + | chr4_2:4961498-4961517 | Msa0584860:CDS | 60.0% | |
| GCCGCCGTGTTAAGATGGCA+TGG | - | chr4_2:4962019-4962038 | None:intergenic | 60.0% | |
| GACAGGCCGCCGTGTTAAGA+TGG | - | chr4_2:4962024-4962043 | None:intergenic | 60.0% | |
| TCTGCGATTTCCTGGGTCCC+AGG | + | chr4_2:4963004-4963023 | Msa0584860:intron | 60.0% | |
| CTGCGATTTCCTGGGTCCCA+GGG | + | chr4_2:4963005-4963024 | Msa0584860:intron | 60.0% | |
| TTGGGCAGACAGATGCTGCC+AGG | + | chr4_2:4963393-4963412 | Msa0584860:CDS | 60.0% | |
| TGGGCAGACAGATGCTGCCA+GGG | + | chr4_2:4963394-4963413 | Msa0584860:CDS | 60.0% | |
| CGCCCAGCACTCTTTGGGCT+TGG | - | chr4_2:4960966-4960985 | None:intergenic | 65.0% | |
| !! | CCCAAAGAGTGCTGGGCGTG+AGG | + | chr4_2:4960968-4960987 | Msa0584860:CDS | 65.0% |
| !! | GACTGGCTTGGGCATTGGGG+TGG | + | chr4_2:4961453-4961472 | Msa0584860:CDS | 65.0% |
| ! | GAGCGTTGCTGCGTGTGAGC+TGG | + | chr4_2:4961497-4961516 | Msa0584860:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 4959099 | 4964025 | 4959099 | ID=Msa0584860;Name=Msa0584860 |
| chr4_2 | mRNA | 4959099 | 4964025 | 4959099 | ID=Msa0584860-mRNA-1;Parent=Msa0584860;Name=Msa0584860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=38|0.62|0.55|0.88|0.87|0.77|9|358|398 |
| chr4_2 | exon | 4959099 | 4959132 | 4959099 | ID=Msa0584860-mRNA-1:exon:1227;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4959244 | 4959287 | 4959244 | ID=Msa0584860-mRNA-1:exon:1228;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4959506 | 4959677 | 4959506 | ID=Msa0584860-mRNA-1:exon:1229;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4960362 | 4960441 | 4960362 | ID=Msa0584860-mRNA-1:exon:1230;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4960925 | 4960992 | 4960925 | ID=Msa0584860-mRNA-1:exon:1231;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4961403 | 4961624 | 4961403 | ID=Msa0584860-mRNA-1:exon:1232;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4961694 | 4961816 | 4961694 | ID=Msa0584860-mRNA-1:exon:1233;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4961938 | 4962090 | 4961938 | ID=Msa0584860-mRNA-1:exon:1234;Parent=Msa0584860-mRNA-1 |
| chr4_2 | exon | 4963329 | 4964025 | 4963329 | ID=Msa0584860-mRNA-1:exon:1235;Parent=Msa0584860-mRNA-1 |
| chr4_2 | five_prime_UTR | 4959099 | 4959132 | 4959099 | ID=Msa0584860-mRNA-1:five_prime_utr;Parent=Msa0584860-mRNA-1 |
| chr4_2 | five_prime_UTR | 4959244 | 4959247 | 4959244 | ID=Msa0584860-mRNA-1:five_prime_utr;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4959248 | 4959287 | 4959248 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4959506 | 4959677 | 4959506 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4960362 | 4960441 | 4960362 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4960925 | 4960992 | 4960925 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4961403 | 4961624 | 4961403 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4961694 | 4961816 | 4961694 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4961938 | 4962090 | 4961938 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | CDS | 4963329 | 4963667 | 4963329 | ID=Msa0584860-mRNA-1:cds;Parent=Msa0584860-mRNA-1 |
| chr4_2 | three_prime_UTR | 4963668 | 4964025 | 4963668 | ID=Msa0584860-mRNA-1:three_prime_utr;Parent=Msa0584860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
