Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766790 | sp|Q8H1F7|IPK_ARATH | 71.865 | 327 | 81 | 4 | 9 | 328 | 10 | 332 | 2.70e-167 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766790 | G7JWN1 | 96.037 | 328 | 9 | 1 | 1 | 328 | 1 | 324 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0766790 | Msa0820720 | 0.800617 | 1.325124e-48 | -8.615850e-47 |
| Msa0766790 | Msa1042690 | 0.800058 | 1.721956e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766790 | MtrunA17_Chr5g0418201 | 96.037 | 328 | 9 | 1 | 1 | 328 | 1 | 324 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766790 | AT1G26640.1 | 71.865 | 327 | 81 | 4 | 9 | 328 | 10 | 332 | 2.75e-168 | 471 |
Find 84 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATGCATGATTGTTATTT+TGG | 0.148164 | 5_2:+29107081 | Msa0766790:three_prime_UTR |
| GCTTCTAAGGTCTCCATTTA+AGG | 0.207284 | 5_2:-29106731 | None:intergenic |
| CTTGTGAACACCAGATTTAC+TGG | 0.227388 | 5_2:-29101715 | None:intergenic |
| GTGGCTAAGGCTATTGATTC+TGG | 0.232270 | 5_2:+29103705 | Msa0766790:CDS |
| GTGGTGCTCTCAGGTTCTTT+TGG | 0.248208 | 5_2:+29101681 | Msa0766790:intron |
| AAATCATCTCCAAACTCTTC+TGG | 0.253532 | 5_2:-29100393 | None:intergenic |
| ACCTGACGCGATACTCTTAA+AGG | 0.279346 | 5_2:+29105682 | Msa0766790:CDS |
| GCGATACTCTTAAAGGAAAT+TGG | 0.282894 | 5_2:+29105689 | Msa0766790:CDS |
| AGCCGTTTCATTGTTGTTCA+TGG | 0.310380 | 5_2:+29100429 | Msa0766790:CDS |
| CATCAGGGATGCTGCTTCTA+AGG | 0.323257 | 5_2:-29106744 | None:intergenic |
| ACCAAGAAAACAACATATTT+AGG | 0.334869 | 5_2:-29105027 | None:intergenic |
| CACTCACTAAAGGCCTTAAA+TGG | 0.345551 | 5_2:+29106718 | Msa0766790:CDS |
| CTTAGCCACGGGAGACAAAT+TGG | 0.346181 | 5_2:-29103691 | None:intergenic |
| TGTTGTAATCCAGAAGAGTT+TGG | 0.381326 | 5_2:+29100384 | Msa0766790:CDS |
| TGAAATTCTTAGCAAGGTTT+CGG | 0.383367 | 5_2:+29100278 | Msa0766790:CDS |
| TTACTTGAGTTCTGCAACTT+CGG | 0.386114 | 5_2:-29105829 | None:intergenic |
| CATTTCCAAGCCAGTAAATC+TGG | 0.386901 | 5_2:+29101705 | Msa0766790:CDS |
| TTCATTGTTGTTCATGGAGC+AGG | 0.392854 | 5_2:+29100435 | Msa0766790:CDS |
| GCAGAGGGTATTCCTTCAAT+TGG | 0.394787 | 5_2:+29103492 | Msa0766790:intron |
| GCATCTTCTCACAAGCCTCC+TGG | 0.408537 | 5_2:+29100324 | Msa0766790:CDS |
| GAACGAAAGACAGATGTATA+TGG | 0.411083 | 5_2:+29105635 | Msa0766790:CDS |
| ACCGACTTGTGCAGAAGATT+CGG | 0.426157 | 5_2:-29106808 | None:intergenic |
| CTGACAGCTGTTGCTGAAGA+TGG | 0.426783 | 5_2:+29105787 | Msa0766790:intron |
| ACTGTTCCAAGCCAGTCATC+AGG | 0.434616 | 5_2:-29106760 | None:intergenic |
| CGATGTCATCATAAGTCATC+TGG | 0.446182 | 5_2:+29104990 | Msa0766790:CDS |
| ACAAGCCTCCTGGGATGGAT+TGG | 0.447646 | 5_2:+29100334 | Msa0766790:CDS |
| TCTGTGTTGATTATTCAATT+CGG | 0.450601 | 5_2:+29107033 | Msa0766790:three_prime_UTR |
| GTTTGTGTTTCCGCCATTAG+TGG | 0.453661 | 5_2:-29099997 | None:intergenic |
| TCCTTTAAGAGTATCGCGTC+AGG | 0.453709 | 5_2:-29105683 | None:intergenic |
| TTGTGCAGAAGATTCGGTTA+TGG | 0.458512 | 5_2:-29106802 | None:intergenic |
| TGAGGGAAGTGAAGAGTCAA+AGG | 0.459222 | 5_2:-29099973 | None:intergenic |
| TCACTTCCCTCATCCACTAA+TGG | 0.459499 | 5_2:+29099984 | Msa0766790:exon |
| CTCCATGAACAACAATGAAA+CGG | 0.483033 | 5_2:-29100431 | None:intergenic |
| CATCTTCTCACAAGCCTCCT+GGG | 0.483864 | 5_2:+29100325 | Msa0766790:CDS |
| CAATTTGTCTCCCGTGGCTA+AGG | 0.483880 | 5_2:+29103692 | Msa0766790:CDS |
| CATTTAAGGCCTTTAGTGAG+TGG | 0.487646 | 5_2:-29106717 | None:intergenic |
| TTCTCACAAGCCTCCTGGGA+TGG | 0.501261 | 5_2:+29100329 | Msa0766790:CDS |
| AGTGAAGAGTCAAAGGAAGA+AGG | 0.502481 | 5_2:-29099966 | None:intergenic |
| GCTGCAATGGTAGCAAAGCT+TGG | 0.504839 | 5_2:+29106580 | Msa0766790:CDS |
| AAAGGTGACATTCCAATTGA+AGG | 0.509879 | 5_2:-29103504 | None:intergenic |
| CAGTAAATCTGGTGTTCACA+AGG | 0.511031 | 5_2:+29101716 | Msa0766790:CDS |
| GTTTCCGCCATTAGTGGATG+AGG | 0.513948 | 5_2:-29099991 | None:intergenic |
| AGCATCCCTGATGACTGGCT+TGG | 0.520554 | 5_2:+29106754 | Msa0766790:CDS |
| CTCTTGCTCCAATCCATCCC+AGG | 0.525817 | 5_2:-29100342 | None:intergenic |
| TGCAACAAGCCACTCACTAA+AGG | 0.526237 | 5_2:+29106708 | Msa0766790:CDS |
| ATCCGCTGTATTGTAAAACT+TGG | 0.527421 | 5_2:+29100036 | Msa0766790:CDS |
| CAATTTGTCTAGGTTCTGCA+TGG | 0.528306 | 5_2:+29104839 | Msa0766790:intron |
| TATGCTAACATGTCTTTCAC+TGG | 0.532757 | 5_2:-29103544 | None:intergenic |
| AAATGATGAAATTCTTAGCA+AGG | 0.533237 | 5_2:+29100272 | Msa0766790:CDS |
| TTCAGCCAATTTGTCTCCCG+TGG | 0.534420 | 5_2:+29103686 | Msa0766790:CDS |
| ATCGCGTCAGGTTCTGTCGG+TGG | 0.536695 | 5_2:-29105671 | None:intergenic |
| GAACACCAGATTTACTGGCT+TGG | 0.541110 | 5_2:-29101710 | None:intergenic |
| TCGCGTCAGGTTCTGTCGGT+GGG | 0.547568 | 5_2:-29105670 | None:intergenic |
| GTGATCCATCCACATGAGAA+AGG | 0.549479 | 5_2:-29103522 | None:intergenic |
| TGCAGTGCTTGATGAGACTC+AGG | 0.556502 | 5_2:+29104865 | Msa0766790:CDS |
| TGTCACCTTTCTCATGTGGA+TGG | 0.559638 | 5_2:+29103517 | Msa0766790:CDS |
| GAAGCAGCATCCCTGATGAC+TGG | 0.566468 | 5_2:+29106749 | Msa0766790:CDS |
| CAGCGGATAGGTTGAGTGAA+GGG | 0.568945 | 5_2:-29100021 | None:intergenic |
| AACGATTTCAAGATTGAGAG+TGG | 0.569043 | 5_2:-29102542 | None:intergenic |
| ACAAAGCCTCCCTTGACAAG+AGG | 0.571080 | 5_2:-29101753 | None:intergenic |
| GTCATCTGGCAGCATACTCA+AGG | 0.579770 | 5_2:+29105004 | Msa0766790:CDS |
| GTTGCTGCTCATGATACAAC+CGG | 0.582358 | 5_2:+29106532 | Msa0766790:CDS |
| CTGTTGCTGAAGATGGAAGC+TGG | 0.585448 | 5_2:+29105794 | Msa0766790:CDS |
| GAATCAATAGCCTTAGCCAC+GGG | 0.586034 | 5_2:-29103702 | None:intergenic |
| CTGAATAAACCTCTTGTCAA+GGG | 0.590352 | 5_2:+29101744 | Msa0766790:CDS |
| GCTGAATAAACCTCTTGTCA+AGG | 0.590850 | 5_2:+29101743 | Msa0766790:CDS |
| CAACAGATTTCAGAATCACC+AGG | 0.591273 | 5_2:-29100366 | None:intergenic |
| CTGTTCCAAGCCAGTCATCA+GGG | 0.591362 | 5_2:-29106759 | None:intergenic |
| TTTCCGCCATTAGTGGATGA+GGG | 0.601018 | 5_2:-29099990 | None:intergenic |
| TACAATAATTCATTTAACTG+TGG | 0.604602 | 5_2:-29106982 | None:intergenic |
| ATGGATTGGAGCAAGAGACC+TGG | 0.619008 | 5_2:+29100348 | Msa0766790:CDS |
| ACAGCGGATAGGTTGAGTGA+AGG | 0.620294 | 5_2:-29100022 | None:intergenic |
| TGCTGAAGATGGAAGCTGGT+CGG | 0.625779 | 5_2:+29105798 | Msa0766790:CDS |
| AGAATCAATAGCCTTAGCCA+CGG | 0.629393 | 5_2:-29103703 | None:intergenic |
| AGTATCGCGTCAGGTTCTGT+CGG | 0.631055 | 5_2:-29105674 | None:intergenic |
| TTAACAATTACACTTATGTG+AGG | 0.639446 | 5_2:+29106888 | Msa0766790:three_prime_UTR |
| GGAATGTCACCTTTCTCATG+TGG | 0.643177 | 5_2:+29103513 | Msa0766790:CDS |
| CTTCCCTCATCCACTAATGG+CGG | 0.647245 | 5_2:+29099987 | Msa0766790:exon |
| ATCGTTAGAGCACTAGCCAG+AGG | 0.652443 | 5_2:+29102559 | Msa0766790:CDS |
| ACCGAATCTTCTGCACAAGT+CGG | 0.652519 | 5_2:+29106807 | Msa0766790:three_prime_UTR |
| AGTAAATCTGGTGTTCACAA+GGG | 0.659703 | 5_2:+29101717 | Msa0766790:CDS |
| AATAAACCTCTTGTCAAGGG+AGG | 0.666246 | 5_2:+29101747 | Msa0766790:CDS |
| TTGCTCCAATCCATCCCAGG+AGG | 0.671384 | 5_2:-29100339 | None:intergenic |
| GCTGCTCATGATACAACCGG+TGG | 0.776167 | 5_2:+29106535 | Msa0766790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAACTTTTAAAG+GGG | + | chr5_2:29102379-29102398 | Msa0766790:intron | 10.0% |
| !!! | ATTTTTTATATTTTGTTTCT+AGG | - | chr5_2:29102446-29102465 | None:intergenic | 10.0% |
| !!! | TAATATATATTTTTTGTTTC+AGG | + | chr5_2:29104948-29104967 | Msa0766790:intron | 10.0% |
| !!! | AATATATATTTTTTGTTTCA+GGG | + | chr5_2:29104949-29104968 | Msa0766790:intron | 10.0% |
| !! | CACTTACATAAATAAATATT+TGG | - | chr5_2:29100666-29100685 | None:intergenic | 15.0% |
| !! | ATTATATCTGATTTATAAAC+TGG | + | chr5_2:29101615-29101634 | Msa0766790:intron | 15.0% |
| !!! | TGAAAGTAAAATCATATTTT+TGG | + | chr5_2:29103191-29103210 | Msa0766790:intron | 15.0% |
| !! | TATTAAAATTCATTCTGAAT+AGG | + | chr5_2:29103456-29103475 | Msa0766790:intron | 15.0% |
| !! | ATTTATTTATTTATCAACAG+TGG | + | chr5_2:29103588-29103607 | Msa0766790:intron | 15.0% |
| !! | TAATAAAATGTAAGAAAGAA+AGG | - | chr5_2:29103810-29103829 | None:intergenic | 15.0% |
| !! | GAATATATAGTAAAACATAA+TGG | + | chr5_2:29104454-29104473 | Msa0766790:intron | 15.0% |
| !!! | ACTTAAATTTTGAATTAATG+AGG | + | chr5_2:29104576-29104595 | Msa0766790:intron | 15.0% |
| !! | TAAAAATAAGTGTAAAATAC+TGG | - | chr5_2:29105176-29105195 | None:intergenic | 15.0% |
| !!! | AATGAAATTTTGAAAGTTAT+TGG | + | chr5_2:29105904-29105923 | Msa0766790:intron | 15.0% |
| !! | TTGATTAATGCAAATATTAG+AGG | + | chr5_2:29100500-29100519 | Msa0766790:intron | 20.0% |
| !!! | ACAAATTGGATGTTATTTTA+AGG | + | chr5_2:29101000-29101019 | Msa0766790:intron | 20.0% |
| !! | TATAATATTCTTGATTGCTT+TGG | + | chr5_2:29101267-29101286 | Msa0766790:intron | 20.0% |
| !!! | TGTAATTGTGAAGTTTTTAA+AGG | + | chr5_2:29101832-29101851 | Msa0766790:intron | 20.0% |
| !!! | AACTGTAAAACAACTATTTT+AGG | + | chr5_2:29102042-29102061 | Msa0766790:intron | 20.0% |
| !! | AAATGGAATAATAAACATGT+AGG | - | chr5_2:29102504-29102523 | None:intergenic | 20.0% |
| !! | TTCCATTTAATTCTAATTTC+AGG | + | chr5_2:29102516-29102535 | Msa0766790:intron | 20.0% |
| !! | TACCTGAAATTAGAATTAAA+TGG | - | chr5_2:29102521-29102540 | None:intergenic | 20.0% |
| !! | AATTTACTGAATGTTATCAT+TGG | + | chr5_2:29102710-29102729 | Msa0766790:intron | 20.0% |
| !!! | AAATATGATTTTACTTTCAC+TGG | - | chr5_2:29103190-29103209 | None:intergenic | 20.0% |
| !!! | AATAATTTGTAGCCAAAAAA+GGG | - | chr5_2:29103427-29103446 | None:intergenic | 20.0% |
| !!! | AAATAATTTGTAGCCAAAAA+AGG | - | chr5_2:29103428-29103447 | None:intergenic | 20.0% |
| !!! | CTTTCTAAGAAAAGTTATTT+AGG | + | chr5_2:29103839-29103858 | Msa0766790:intron | 20.0% |
| !! | ATGCAAAATGAATAATATAG+TGG | - | chr5_2:29104049-29104068 | None:intergenic | 20.0% |
| !! | ATAATGTTGAAAAAAACAAG+TGG | - | chr5_2:29104335-29104354 | None:intergenic | 20.0% |
| !!! | TTTTCAATATTGTATCACAA+TGG | + | chr5_2:29104406-29104425 | Msa0766790:intron | 20.0% |
| !! | AATTTAAGTCATAGATCTAA+TGG | - | chr5_2:29104565-29104584 | None:intergenic | 20.0% |
| !! | TACATTGTCAATAAAAACAA+AGG | - | chr5_2:29104652-29104671 | None:intergenic | 20.0% |
| !!! | TTTTGAATCAAATCTTATGA+TGG | - | chr5_2:29104684-29104703 | None:intergenic | 20.0% |
| !! | TAGAAATTCAAGAATAAAGA+TGG | - | chr5_2:29105077-29105096 | None:intergenic | 20.0% |
| !!! | TTTAAAATGCAGTTACAATA+TGG | + | chr5_2:29105192-29105211 | Msa0766790:intron | 20.0% |
| !! | TTAAAATGCAGTTACAATAT+GGG | + | chr5_2:29105193-29105212 | Msa0766790:intron | 20.0% |
| !!! | TTTTATATTGAGTTTAACAG+AGG | - | chr5_2:29105248-29105267 | None:intergenic | 20.0% |
| !! | CTATATGAAGAGAATATAAT+AGG | - | chr5_2:29105753-29105772 | None:intergenic | 20.0% |
| !! | AAATTGTAATTCAGAAAACT+TGG | - | chr5_2:29105956-29105975 | None:intergenic | 20.0% |
| !! | CTTACTAAAAAGTTCTTATA+AGG | - | chr5_2:29106059-29106078 | None:intergenic | 20.0% |
| !!! | CTTATAAGAACTTTTTAGTA+AGG | + | chr5_2:29106057-29106076 | Msa0766790:intron | 20.0% |
| !!! | TATTTTACCTTTTGTTAAAG+AGG | - | chr5_2:29106154-29106173 | None:intergenic | 20.0% |
| !! | GATGTCATAAATAAACAATT+AGG | + | chr5_2:29106370-29106389 | Msa0766790:intron | 20.0% |
| !! | TACAATAATTCATTTAACTG+TGG | - | chr5_2:29106985-29107004 | None:intergenic | 20.0% |
| !! | ACGAAGTAAAATTCTTTTGA+TGG | + | chr5_2:29100200-29100219 | Msa0766790:intron | 25.0% |
| ! | AAATGATGAAATTCTTAGCA+AGG | + | chr5_2:29100272-29100291 | Msa0766790:CDS | 25.0% |
| ! | GTACAAAGATGAATAAATGT+TGG | + | chr5_2:29100554-29100573 | Msa0766790:intron | 25.0% |
| ! | ACAATTGTTATAATCGTTGA+AGG | - | chr5_2:29100738-29100757 | None:intergenic | 25.0% |
| ! | CAACGATTATAACAATTGTT+TGG | + | chr5_2:29100739-29100758 | Msa0766790:intron | 25.0% |
| !!! | ATTGGATGTTATTTTAAGGA+TGG | + | chr5_2:29101004-29101023 | Msa0766790:intron | 25.0% |
| !!! | TATTTCTTTTGAAGATCAAG+TGG | + | chr5_2:29101071-29101090 | Msa0766790:intron | 25.0% |
| ! | GGTGACTTTCATTTAATAAA+GGG | - | chr5_2:29101171-29101190 | None:intergenic | 25.0% |
| ! | TGTAATTAACGCTAGAATTA+AGG | + | chr5_2:29101294-29101313 | Msa0766790:intron | 25.0% |
| ! | TCAAATAATTCAATCCAAAC+AGG | - | chr5_2:29101320-29101339 | None:intergenic | 25.0% |
| ! | ACTTATAAATAAGCACTTCA+TGG | + | chr5_2:29101477-29101496 | Msa0766790:intron | 25.0% |
| ! | TGTTTGGATAAACAACTTAA+TGG | - | chr5_2:29101526-29101545 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr5_2:29101526-29101545 | Msa0766790:intron | 25.0% |
| !!! | AAAACAACTATTTTAGGACT+AGG | + | chr5_2:29102048-29102067 | Msa0766790:intron | 25.0% |
| !! | ATACTATAACACTACTCTTT+TGG | - | chr5_2:29102109-29102128 | None:intergenic | 25.0% |
| !!! | ATAAGGTTTCTTTTTTGGAT+TGG | - | chr5_2:29102188-29102207 | None:intergenic | 25.0% |
| !!! | CATTCATAAGGTTTCTTTTT+TGG | - | chr5_2:29102193-29102212 | None:intergenic | 25.0% |
| ! | TAATTAGATTCAGTGCATAT+TGG | - | chr5_2:29102341-29102360 | None:intergenic | 25.0% |
| !!! | ATATTTTGTTTCTAGGACAA+CGG | - | chr5_2:29102439-29102458 | None:intergenic | 25.0% |
| ! | TGATCAAACAAGGAAAATTT+GGG | - | chr5_2:29102628-29102647 | None:intergenic | 25.0% |
| ! | TTGATCAAACAAGGAAAATT+TGG | - | chr5_2:29102629-29102648 | None:intergenic | 25.0% |
| !! | TTTCAAGCTTTTCTTAATCA+TGG | + | chr5_2:29102670-29102689 | Msa0766790:intron | 25.0% |
| ! | TACAATGTACTGTTAAATAG+CGG | - | chr5_2:29102896-29102915 | None:intergenic | 25.0% |
| !!! | GTTCATTTTTCTTTATCTTC+AGG | - | chr5_2:29103168-29103187 | None:intergenic | 25.0% |
| !!! | TACTCTCTTTAGAACTTTTT+TGG | + | chr5_2:29103230-29103249 | Msa0766790:intron | 25.0% |
| !! | ATAATTTGTAGCCAAAAAAG+GGG | - | chr5_2:29103426-29103445 | None:intergenic | 25.0% |
| ! | TACTTTAACTGAATATACGT+TGG | + | chr5_2:29103565-29103584 | Msa0766790:intron | 25.0% |
| ! | ATTGAAGAATTCAATCTTAC+AGG | - | chr5_2:29103738-29103757 | None:intergenic | 25.0% |
| ! | TTGAATAAACTAGTGACAAT+TGG | - | chr5_2:29103982-29104001 | None:intergenic | 25.0% |
| !! | AAAGACCTTTTTCTATCTTA+TGG | - | chr5_2:29104105-29104124 | None:intergenic | 25.0% |
| ! | TAGTAACTTAGAAACCTAAA+GGG | + | chr5_2:29104481-29104500 | Msa0766790:intron | 25.0% |
| ! | ACCAAGAAAACAACATATTT+AGG | - | chr5_2:29105030-29105049 | None:intergenic | 25.0% |
| ! | TGACTTAATATATTCAGCAA+GGG | - | chr5_2:29105271-29105290 | None:intergenic | 25.0% |
| ! | TTGACTTAATATATTCAGCA+AGG | - | chr5_2:29105272-29105291 | None:intergenic | 25.0% |
| !! | CATAGAATGTCATTTGTATA+AGG | + | chr5_2:29105442-29105461 | Msa0766790:intron | 25.0% |
| !!! | AGATTTTGTTTCAAGAAGTT+TGG | - | chr5_2:29105558-29105577 | None:intergenic | 25.0% |
| !! | TATAATTTGAGATATGTCAG+TGG | - | chr5_2:29105585-29105604 | None:intergenic | 25.0% |
| !! | TGTTAACTTTACCTTGTTTA+TGG | + | chr5_2:29105727-29105746 | Msa0766790:intron | 25.0% |
| ! | AATATAATAGGCCATAAACA+AGG | - | chr5_2:29105741-29105760 | None:intergenic | 25.0% |
| ! | AAGTTATTGGTGTGATTTAT+TGG | + | chr5_2:29105917-29105936 | Msa0766790:intron | 25.0% |
| ! | TGTATAACCTCTTTAACAAA+AGG | + | chr5_2:29106144-29106163 | Msa0766790:intron | 25.0% |
| !!! | ATAAAGTCACAAGTTTTTTC+TGG | + | chr5_2:29106171-29106190 | Msa0766790:intron | 25.0% |
| ! | ATTAGGATAAGTTTCTAAGT+TGG | + | chr5_2:29106387-29106406 | Msa0766790:intron | 25.0% |
| ! | GAATATGTGATTTGAATGTA+TGG | + | chr5_2:29106463-29106482 | Msa0766790:intron | 25.0% |
| ! | TTAACAATTACACTTATGTG+AGG | + | chr5_2:29106888-29106907 | Msa0766790:three_prime_UTR | 25.0% |
| !!! | TCTGTGTTGATTATTCAATT+CGG | + | chr5_2:29107033-29107052 | Msa0766790:three_prime_UTR | 25.0% |
| !!! | TGTATGCATGATTGTTATTT+TGG | + | chr5_2:29107081-29107100 | Msa0766790:three_prime_UTR | 25.0% |
| ! | TACCAAGTTTTACAATACAG+CGG | - | chr5_2:29100041-29100060 | None:intergenic | 30.0% |
| !! | ATTCTTTTGATGGCATATTC+AGG | + | chr5_2:29100210-29100229 | Msa0766790:intron | 30.0% |
| TGAAATTCTTAGCAAGGTTT+CGG | + | chr5_2:29100278-29100297 | Msa0766790:CDS | 30.0% | |
| AATATGTTGCAAACAGCTTA+CGG | + | chr5_2:29100610-29100629 | Msa0766790:intron | 30.0% | |
| TATAATCGTTGAAGGATTAC+AGG | - | chr5_2:29100730-29100749 | None:intergenic | 30.0% | |
| AAGATGCATCTTGTTGATAT+AGG | - | chr5_2:29100770-29100789 | None:intergenic | 30.0% | |
| !! | TATTTTAAGGATGGTTTCGT+TGG | + | chr5_2:29101013-29101032 | Msa0766790:intron | 30.0% |
| AGAAATACGTGACATCAAAT+TGG | - | chr5_2:29101058-29101077 | None:intergenic | 30.0% | |
| CAAGTGGTTGTATTTATAAG+TGG | + | chr5_2:29101087-29101106 | Msa0766790:intron | 30.0% | |
| GGGTGACTTTCATTTAATAA+AGG | - | chr5_2:29101172-29101191 | None:intergenic | 30.0% | |
| TTAAATGAAAGTCACCCATA+TGG | + | chr5_2:29101175-29101194 | Msa0766790:intron | 30.0% | |
| TAAATGAAAGTCACCCATAT+GGG | + | chr5_2:29101176-29101195 | Msa0766790:intron | 30.0% | |
| AATATTCTTGATTGCTTTGG+CGG | + | chr5_2:29101270-29101289 | Msa0766790:intron | 30.0% | |
| ! | TTTTCATAAGCTATTCCAGA+CGG | - | chr5_2:29101374-29101393 | None:intergenic | 30.0% |
| !! | TCAAGTGCAAAAACTTGTTA+AGG | - | chr5_2:29101552-29101571 | None:intergenic | 30.0% |
| ATCAGATATAATGTGAACCA+AGG | - | chr5_2:29101607-29101626 | None:intergenic | 30.0% | |
| ! | TGAGTTCATATTAGTCTATG+TGG | + | chr5_2:29101662-29101681 | Msa0766790:intron | 30.0% |
| AAACTTCACAATTACAACTG+TGG | - | chr5_2:29101828-29101847 | None:intergenic | 30.0% | |
| ! | GATTGGTAAACTTTGAAGAA+CGG | - | chr5_2:29102171-29102190 | None:intergenic | 30.0% |
| AAACCTTATGAATGCATGTT+TGG | + | chr5_2:29102199-29102218 | Msa0766790:intron | 30.0% | |
| AATCCAAACATGCATTCATA+AGG | - | chr5_2:29102205-29102224 | None:intergenic | 30.0% | |
| TTAGAGCTTCAACAAAATCA+AGG | - | chr5_2:29102258-29102277 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCCGTAATCACAA+TGG | + | chr5_2:29102284-29102303 | Msa0766790:intron | 30.0% |
| TGAATCTAATTATGCACAGA+AGG | + | chr5_2:29102349-29102368 | Msa0766790:intron | 30.0% | |
| !!! | TATTTTGTTTCTAGGACAAC+GGG | - | chr5_2:29102438-29102457 | None:intergenic | 30.0% |
| !! | TACAGATTAGTTTCAGAATG+AGG | + | chr5_2:29102474-29102493 | Msa0766790:intron | 30.0% |
| AATAGTTATGAAACTACCTC+TGG | - | chr5_2:29102578-29102597 | None:intergenic | 30.0% | |
| ! | TTCCTTGTTTGATCAAACAT+TGG | + | chr5_2:29102633-29102652 | Msa0766790:intron | 30.0% |
| AACCAATGTTTGATCAAACA+AGG | - | chr5_2:29102638-29102657 | None:intergenic | 30.0% | |
| TTTCTTAATCATGGTGTAGT+TGG | + | chr5_2:29102679-29102698 | Msa0766790:intron | 30.0% | |
| AAATCTTGATATGACAGAGA+TGG | - | chr5_2:29102757-29102776 | None:intergenic | 30.0% | |
| TCAAATAGCAAGGTAAAGAT+AGG | - | chr5_2:29103048-29103067 | None:intergenic | 30.0% | |
| CCATATTTCATCAAATAGCA+AGG | - | chr5_2:29103058-29103077 | None:intergenic | 30.0% | |
| !! | CCTTGCTATTTGATGAAATA+TGG | + | chr5_2:29103055-29103074 | Msa0766790:intron | 30.0% |
| TTTGATGAAATATGGAAGTG+AGG | + | chr5_2:29103063-29103082 | Msa0766790:intron | 30.0% | |
| GAAGAGTAGTTAACTTTATC+TGG | - | chr5_2:29103640-29103659 | None:intergenic | 30.0% | |
| TTAGTCAGTTCAAACAGTTT+AGG | - | chr5_2:29103869-29103888 | None:intergenic | 30.0% | |
| ! | TAATTACCAAGGTTTTCACT+AGG | - | chr5_2:29103894-29103913 | None:intergenic | 30.0% |
| ! | AGTGAAAACCTTGGTAATTA+AGG | + | chr5_2:29103894-29103913 | Msa0766790:intron | 30.0% |
| CGATTCCATAAGATAGAAAA+AGG | + | chr5_2:29104097-29104116 | Msa0766790:intron | 30.0% | |
| AGTACTTCATTACAATGAGT+CGG | - | chr5_2:29104293-29104312 | None:intergenic | 30.0% | |
| TAGAGTTTCATAGAATACGA+TGG | + | chr5_2:29104371-29104390 | Msa0766790:intron | 30.0% | |
| TTAGGTTTCTAAGTTACTAG+AGG | - | chr5_2:29104480-29104499 | None:intergenic | 30.0% | |
| CTAGTAACTTAGAAACCTAA+AGG | + | chr5_2:29104480-29104499 | Msa0766790:intron | 30.0% | |
| CTGTTAGATAATAGGTTAGT+GGG | - | chr5_2:29104521-29104540 | None:intergenic | 30.0% | |
| ACTGTTAGATAATAGGTTAG+TGG | - | chr5_2:29104522-29104541 | None:intergenic | 30.0% | |
| GTTGGTTACTGTTAGATAAT+AGG | - | chr5_2:29104529-29104548 | None:intergenic | 30.0% | |
| AAATATGAACCCTCAAAGTA+AGG | - | chr5_2:29104777-29104796 | None:intergenic | 30.0% | |
| TTCTTCACTTGAAATGATGT+AGG | + | chr5_2:29104808-29104827 | Msa0766790:intron | 30.0% | |
| !!! | GCCTAAATATGTTGTTTTCT+TGG | + | chr5_2:29105026-29105045 | Msa0766790:CDS | 30.0% |
| TTATCGAGATATTCATCACT+TGG | - | chr5_2:29105324-29105343 | None:intergenic | 30.0% | |
| TTAATTCTGCTATGCAATAG+CGG | + | chr5_2:29105396-29105415 | Msa0766790:intron | 30.0% | |
| ATAGCTGAAGTTCAACAAAA+AGG | + | chr5_2:29106236-29106255 | Msa0766790:intron | 30.0% | |
| !! | ATGTATGGATTGAACTTTTC+TGG | + | chr5_2:29106478-29106497 | Msa0766790:intron | 30.0% |
| !!! | GATTTTTGTTTTCATACCAC+CGG | - | chr5_2:29106554-29106573 | None:intergenic | 30.0% |
| AAAACATGTAGCTACATTTC+AGG | + | chr5_2:29106684-29106703 | Msa0766790:intron | 30.0% | |
| ! | AGTTTTACAATACAGCGGAT+AGG | - | chr5_2:29100036-29100055 | None:intergenic | 35.0% |
| ATCCGCTGTATTGTAAAACT+TGG | + | chr5_2:29100036-29100055 | Msa0766790:CDS | 35.0% | |
| TGTTGTAATCCAGAAGAGTT+TGG | + | chr5_2:29100384-29100403 | Msa0766790:CDS | 35.0% | |
| AAATCATCTCCAAACTCTTC+TGG | - | chr5_2:29100396-29100415 | None:intergenic | 35.0% | |
| CTCCATGAACAACAATGAAA+CGG | - | chr5_2:29100434-29100453 | None:intergenic | 35.0% | |
| TGGAGATATCGTTAGCTATA+CGG | + | chr5_2:29100574-29100593 | Msa0766790:intron | 35.0% | |
| AACAAGATGCATCTTCTTTC+TGG | + | chr5_2:29100775-29100794 | Msa0766790:intron | 35.0% | |
| AAGTCAAACATGCTTAACTG+TGG | - | chr5_2:29100821-29100840 | None:intergenic | 35.0% | |
| ACAGTTAAGCATGTTTGACT+TGG | + | chr5_2:29100820-29100839 | Msa0766790:intron | 35.0% | |
| ACTTGGAGTAGTCTTTAGAT+GGG | + | chr5_2:29100837-29100856 | Msa0766790:intron | 35.0% | |
| !! | AAAACTCGTGTTGGTTTGTA+GGG | + | chr5_2:29100915-29100934 | Msa0766790:intron | 35.0% |
| ! | TTCAAGTTCAAGGATAAAGC+GGG | - | chr5_2:29100978-29100997 | None:intergenic | 35.0% |
| ! | CTTCAAGTTCAAGGATAAAG+CGG | - | chr5_2:29100979-29100998 | None:intergenic | 35.0% |
| ! | CAATTTGTCCTTCAAGTTCA+AGG | - | chr5_2:29100988-29101007 | None:intergenic | 35.0% |
| CTTGAACTTGAAGGACAAAT+TGG | + | chr5_2:29100986-29101005 | Msa0766790:intron | 35.0% | |
| TGGTTAGAGATAACCCATAT+GGG | - | chr5_2:29101192-29101211 | None:intergenic | 35.0% | |
| !!! | AATCACTTTTTTTGACCGTC+TGG | + | chr5_2:29101356-29101375 | Msa0766790:intron | 35.0% |
| AATAAGCACTTCATGGCAAA+TGG | + | chr5_2:29101484-29101503 | Msa0766790:intron | 35.0% | |
| !! | AAACTTGTTAAGGCCTTGTT+TGG | - | chr5_2:29101542-29101561 | None:intergenic | 35.0% |
| ! | ACTTGAAGTGCTTCACAATT+TGG | + | chr5_2:29101566-29101585 | Msa0766790:intron | 35.0% |
| AGTAAATCTGGTGTTCACAA+GGG | + | chr5_2:29101717-29101736 | Msa0766790:CDS | 35.0% | |
| CTGAATAAACCTCTTGTCAA+GGG | + | chr5_2:29101744-29101763 | Msa0766790:CDS | 35.0% | |
| TTCACAATTACAACTGTGGA+GGG | - | chr5_2:29101824-29101843 | None:intergenic | 35.0% | |
| !! | TCTTTTGGCTATGACATTGA+TGG | - | chr5_2:29102094-29102113 | None:intergenic | 35.0% |
| TGAATGCATGTTTGGATTGA+CGG | + | chr5_2:29102207-29102226 | Msa0766790:intron | 35.0% | |
| GTGCATATTGGATTGAATGT+GGG | - | chr5_2:29102329-29102348 | None:intergenic | 35.0% | |
| AGTGCATATTGGATTGAATG+TGG | - | chr5_2:29102330-29102349 | None:intergenic | 35.0% | |
| AACGATTTCAAGATTGAGAG+TGG | - | chr5_2:29102545-29102564 | None:intergenic | 35.0% | |
| TTGATATGACAGAGATGGTT+AGG | - | chr5_2:29102752-29102771 | None:intergenic | 35.0% | |
| ACAATGCTATAGCGATTGTA+TGG | + | chr5_2:29102870-29102889 | Msa0766790:intron | 35.0% | |
| GACTCAGTGTTGTCAAATAT+TGG | - | chr5_2:29102983-29103002 | None:intergenic | 35.0% | |
| CACCAATAATCCACGAAAAA+TGG | + | chr5_2:29103271-29103290 | Msa0766790:intron | 35.0% | |
| !! | CTCCATTTTTCGTGGATTAT+TGG | - | chr5_2:29103276-29103295 | None:intergenic | 35.0% |
| CAATAATCCACGAAAAATGG+AGG | + | chr5_2:29103274-29103293 | Msa0766790:intron | 35.0% | |
| AAAGGTGACATTCCAATTGA+AGG | - | chr5_2:29103507-29103526 | None:intergenic | 35.0% | |
| TATGCTAACATGTCTTTCAC+TGG | - | chr5_2:29103547-29103566 | None:intergenic | 35.0% | |
| CTAAAACCTAGTGAAAACCT+TGG | + | chr5_2:29103885-29103904 | Msa0766790:intron | 35.0% | |
| CACTTGATCCTTAATTACCA+AGG | - | chr5_2:29103905-29103924 | None:intergenic | 35.0% | |
| GTGACAATTGGAATATAGTG+CGG | - | chr5_2:29103970-29103989 | None:intergenic | 35.0% | |
| ! | ACTAGAGATTCGTATCGATA+AGG | - | chr5_2:29104227-29104246 | None:intergenic | 35.0% |
| TTCATAGAATACGATGGAGA+TGG | + | chr5_2:29104377-29104396 | Msa0766790:intron | 35.0% | |
| !! | AGTAACCAACCACTTTTCTT+TGG | + | chr5_2:29104539-29104558 | Msa0766790:intron | 35.0% |
| ATCTAATGGCCAAAGAAAAG+TGG | - | chr5_2:29104551-29104570 | None:intergenic | 35.0% | |
| CACTTGAAATGATGTAGGTT+TGG | + | chr5_2:29104813-29104832 | Msa0766790:intron | 35.0% | |
| ATGGATATATGCATGACTCA+TGG | - | chr5_2:29105058-29105077 | None:intergenic | 35.0% | |
| ! | ACAGACCTTTGTTTGCTAAA+CGG | - | chr5_2:29105373-29105392 | None:intergenic | 35.0% |
| TGTCTTTCGTTCATGCTTAA+TGG | - | chr5_2:29105627-29105646 | None:intergenic | 35.0% | |
| GAACGAAAGACAGATGTATA+TGG | + | chr5_2:29105635-29105654 | Msa0766790:CDS | 35.0% | |
| GCGATACTCTTAAAGGAAAT+TGG | + | chr5_2:29105689-29105708 | Msa0766790:CDS | 35.0% | |
| TTACTTGAGTTCTGCAACTT+CGG | - | chr5_2:29105832-29105851 | None:intergenic | 35.0% | |
| CTCAAGTAAGCAGATTTAGT+CGG | + | chr5_2:29105843-29105862 | Msa0766790:intron | 35.0% | |
| !!! | GTCACAAGTTTTTTCTGGAA+TGG | + | chr5_2:29106176-29106195 | Msa0766790:intron | 35.0% |
| AACTTCAGCTATACAGTTTC+AGG | - | chr5_2:29106228-29106247 | None:intergenic | 35.0% | |
| AAAAATCTCAGAAGCTGCAA+TGG | + | chr5_2:29106567-29106586 | Msa0766790:CDS | 35.0% | |
| AGTGAAGAGTCAAAGGAAGA+AGG | - | chr5_2:29099969-29099988 | None:intergenic | 40.0% | |
| TATTCCTCATAGCTGAGAGA+CGG | - | chr5_2:29100156-29100175 | None:intergenic | 40.0% | |
| !! | CTTTTGATGGCATATTCAGG+AGG | + | chr5_2:29100213-29100232 | Msa0766790:intron | 40.0% |
| CAACAGATTTCAGAATCACC+AGG | - | chr5_2:29100369-29100388 | None:intergenic | 40.0% | |
| ! | AGCCGTTTCATTGTTGTTCA+TGG | + | chr5_2:29100429-29100448 | Msa0766790:CDS | 40.0% |
| ! | TTCATTGTTGTTCATGGAGC+AGG | + | chr5_2:29100435-29100454 | Msa0766790:CDS | 40.0% |
| GGAGATATCGTTAGCTATAC+GGG | + | chr5_2:29100575-29100594 | Msa0766790:intron | 40.0% | |
| ! | TGAAGGATTACAGGAGCATA+TGG | - | chr5_2:29100721-29100740 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr5_2:29100810-29100829 | None:intergenic | 40.0% | |
| GACTTGGAGTAGTCTTTAGA+TGG | + | chr5_2:29100836-29100855 | Msa0766790:intron | 40.0% | |
| TTATCGGGAAACTTCACAGT+AGG | - | chr5_2:29100866-29100885 | None:intergenic | 40.0% | |
| !! | GAAAACTCGTGTTGGTTTGT+AGG | + | chr5_2:29100914-29100933 | Msa0766790:intron | 40.0% |
| CGCTTTATCCTTGAACTTGA+AGG | + | chr5_2:29100977-29100996 | Msa0766790:intron | 40.0% | |
| TGACAATTTCGATCCTCTAC+AGG | - | chr5_2:29101144-29101163 | None:intergenic | 40.0% | |
| CTGGTTAGAGATAACCCATA+TGG | - | chr5_2:29101193-29101212 | None:intergenic | 40.0% | |
| ! | AGTTCATTGATTGCAGACAC+TGG | - | chr5_2:29101212-29101231 | None:intergenic | 40.0% |
| ! | GGATTGTGATTTGTCAACCT+TGG | + | chr5_2:29101587-29101606 | Msa0766790:intron | 40.0% |
| CATTTCCAAGCCAGTAAATC+TGG | + | chr5_2:29101705-29101724 | Msa0766790:CDS | 40.0% | |
| CTTGTGAACACCAGATTTAC+TGG | - | chr5_2:29101718-29101737 | None:intergenic | 40.0% | |
| CAGTAAATCTGGTGTTCACA+AGG | + | chr5_2:29101716-29101735 | Msa0766790:CDS | 40.0% | |
| GCTGAATAAACCTCTTGTCA+AGG | + | chr5_2:29101743-29101762 | Msa0766790:CDS | 40.0% | |
| AATAAACCTCTTGTCAAGGG+AGG | + | chr5_2:29101747-29101766 | Msa0766790:CDS | 40.0% | |
| CTTCACAATTACAACTGTGG+AGG | - | chr5_2:29101825-29101844 | None:intergenic | 40.0% | |
| !! | AGCTTGATTAGCATCGACTT+GGG | - | chr5_2:29101920-29101939 | None:intergenic | 40.0% |
| !! | AAGCTTGATTAGCATCGACT+TGG | - | chr5_2:29101921-29101940 | None:intergenic | 40.0% |
| ! | CTAGAGTGCCATTGTGATTA+CGG | - | chr5_2:29102295-29102314 | None:intergenic | 40.0% |
| TGGATTGAATGTGGGTTTGA+TGG | - | chr5_2:29102321-29102340 | None:intergenic | 40.0% | |
| ATATCAAGATTTCTCGCACG+TGG | + | chr5_2:29102765-29102784 | Msa0766790:intron | 40.0% | |
| ATATTGGCGCTATAGCACTA+CGG | - | chr5_2:29102967-29102986 | None:intergenic | 40.0% | |
| !! | CCAAAATCCTCCATTTTTCG+TGG | - | chr5_2:29103284-29103303 | None:intergenic | 40.0% |
| ! | CCACGAAAAATGGAGGATTT+TGG | + | chr5_2:29103281-29103300 | Msa0766790:intron | 40.0% |
| TCTCTTCTCATCTTTGAACG+AGG | + | chr5_2:29103311-29103330 | Msa0766790:intron | 40.0% | |
| !!! | GCTTCATTTCTCCCCTTTTT+TGG | + | chr5_2:29103412-29103431 | Msa0766790:intron | 40.0% |
| ! | AGGTTTGTTTCTTTGTGCAG+AGG | + | chr5_2:29103476-29103495 | Msa0766790:intron | 40.0% |
| ! | GGTTTGTTTCTTTGTGCAGA+GGG | + | chr5_2:29103477-29103496 | Msa0766790:intron | 40.0% |
| CGTTCATATTCAACATGTGC+AGG | + | chr5_2:29103659-29103678 | Msa0766790:intron | 40.0% | |
| ! | AGAATCAATAGCCTTAGCCA+CGG | - | chr5_2:29103706-29103725 | None:intergenic | 40.0% |
| CATGTAACTACAATGTGCCT+AGG | - | chr5_2:29104019-29104038 | None:intergenic | 40.0% | |
| AATGGCCAAAGAAAAGTGGT+TGG | - | chr5_2:29104547-29104566 | None:intergenic | 40.0% | |
| GGGGAAACATAAGTACATCA+TGG | - | chr5_2:29104746-29104765 | None:intergenic | 40.0% | |
| TCAAAGTAAGGTTCAAAGGG+GGG | - | chr5_2:29104765-29104784 | None:intergenic | 40.0% | |
| CTCAAAGTAAGGTTCAAAGG+GGG | - | chr5_2:29104766-29104785 | None:intergenic | 40.0% | |
| CCTCAAAGTAAGGTTCAAAG+GGG | - | chr5_2:29104767-29104786 | None:intergenic | 40.0% | |
| CCCTCAAAGTAAGGTTCAAA+GGG | - | chr5_2:29104768-29104787 | None:intergenic | 40.0% | |
| CCCTTTGAACCTTACTTTGA+GGG | + | chr5_2:29104765-29104784 | Msa0766790:intron | 40.0% | |
| ACCCTCAAAGTAAGGTTCAA+AGG | - | chr5_2:29104769-29104788 | None:intergenic | 40.0% | |
| ! | GGTTTGGTTGCAATTTGTCT+AGG | + | chr5_2:29104829-29104848 | Msa0766790:intron | 40.0% |
| CAATTTGTCTAGGTTCTGCA+TGG | + | chr5_2:29104839-29104858 | Msa0766790:intron | 40.0% | |
| !! | CAGGGATGCACTATTTTAAG+CGG | + | chr5_2:29104967-29104986 | Msa0766790:intron | 40.0% |
| CGATGTCATCATAAGTCATC+TGG | + | chr5_2:29104990-29105009 | Msa0766790:CDS | 40.0% | |
| GATATATGCATGACTCATGG+AGG | - | chr5_2:29105055-29105074 | None:intergenic | 40.0% | |
| ATTGAGTTTAACAGAGGACG+AGG | - | chr5_2:29105242-29105261 | None:intergenic | 40.0% | |
| GGATGGAACTAAATACTCAC+AGG | - | chr5_2:29105303-29105322 | None:intergenic | 40.0% | |
| CGAGATATTCATCACTTGGA+TGG | - | chr5_2:29105320-29105339 | None:intergenic | 40.0% | |
| ! | CAGACCTTTGTTTGCTAAAC+GGG | - | chr5_2:29105372-29105391 | None:intergenic | 40.0% |
| AAATTACATGCCCCTACTCA+CGG | - | chr5_2:29106329-29106348 | None:intergenic | 40.0% | |
| ! | CATTTAAGGCCTTTAGTGAG+TGG | - | chr5_2:29106720-29106739 | None:intergenic | 40.0% |
| CACTCACTAAAGGCCTTAAA+TGG | + | chr5_2:29106718-29106737 | Msa0766790:CDS | 40.0% | |
| !! | GCTTCTAAGGTCTCCATTTA+AGG | - | chr5_2:29106734-29106753 | None:intergenic | 40.0% |
| ! | TTGTGCAGAAGATTCGGTTA+TGG | - | chr5_2:29106805-29106824 | None:intergenic | 40.0% |
| TGAGGGAAGTGAAGAGTCAA+AGG | - | chr5_2:29099976-29099995 | None:intergenic | 45.0% | |
| TCACTTCCCTCATCCACTAA+TGG | + | chr5_2:29099984-29100003 | Msa0766790:exon | 45.0% | |
| ! | TTTCCGCCATTAGTGGATGA+GGG | - | chr5_2:29099993-29100012 | None:intergenic | 45.0% |
| GTTTGTGTTTCCGCCATTAG+TGG | - | chr5_2:29100000-29100019 | None:intergenic | 45.0% | |
| TGTTCATGGAGCAGGTTCTT+CGG | + | chr5_2:29100443-29100462 | Msa0766790:intron | 45.0% | |
| TGGCAATGCTTAAAGTCGTC+TGG | + | chr5_2:29100943-29100962 | Msa0766790:intron | 45.0% | |
| GGCAATGCTTAAAGTCGTCT+GGG | + | chr5_2:29100944-29100963 | Msa0766790:intron | 45.0% | |
| CATACACGATACACCTGTAG+AGG | + | chr5_2:29101128-29101147 | Msa0766790:intron | 45.0% | |
| CGCTAGAATTAAGGCCTGTT+TGG | + | chr5_2:29101303-29101322 | Msa0766790:intron | 45.0% | |
| TTAGTCTATGTGGTGCTCTC+AGG | + | chr5_2:29101672-29101691 | Msa0766790:intron | 45.0% | |
| ! | TGGTGCTCTCAGGTTCTTTT+GGG | + | chr5_2:29101682-29101701 | Msa0766790:intron | 45.0% |
| ! | GAACACCAGATTTACTGGCT+TGG | - | chr5_2:29101713-29101732 | None:intergenic | 45.0% |
| ! | TATCAGTGCATCTGCCACTT+AGG | + | chr5_2:29101878-29101897 | Msa0766790:intron | 45.0% |
| !! | GATTAGCATCGACTTGGGTT+TGG | - | chr5_2:29101915-29101934 | None:intergenic | 45.0% |
| CGGTGAGCTTGATGAAATCA+CGG | + | chr5_2:29102227-29102246 | Msa0766790:intron | 45.0% | |
| !! | GCAGAGGGTATTCCTTCAAT+TGG | + | chr5_2:29103492-29103511 | Msa0766790:intron | 45.0% |
| GGAATGTCACCTTTCTCATG+TGG | + | chr5_2:29103513-29103532 | Msa0766790:CDS | 45.0% | |
| TGTCACCTTTCTCATGTGGA+TGG | + | chr5_2:29103517-29103536 | Msa0766790:CDS | 45.0% | |
| GTGATCCATCCACATGAGAA+AGG | - | chr5_2:29103525-29103544 | None:intergenic | 45.0% | |
| ! | GAATCAATAGCCTTAGCCAC+GGG | - | chr5_2:29103705-29103724 | None:intergenic | 45.0% |
| !! | GTGGCTAAGGCTATTGATTC+TGG | + | chr5_2:29103705-29103724 | Msa0766790:CDS | 45.0% |
| ! | AGTAGACTAGAGAGTGTGTG+TGG | + | chr5_2:29103938-29103957 | Msa0766790:intron | 45.0% |
| ! | GTAGACTAGAGAGTGTGTGT+GGG | + | chr5_2:29103939-29103958 | Msa0766790:intron | 45.0% |
| CAAACACAATTGCCTGTCCT+AGG | + | chr5_2:29103999-29104018 | Msa0766790:intron | 45.0% | |
| AACTACAATGTGCCTAGGAC+AGG | - | chr5_2:29104014-29104033 | None:intergenic | 45.0% | |
| AGAATACGATGGAGATGGCT+AGG | + | chr5_2:29104382-29104401 | Msa0766790:intron | 45.0% | |
| GAATACGATGGAGATGGCTA+GGG | + | chr5_2:29104383-29104402 | Msa0766790:intron | 45.0% | |
| ! | GTTAGTGGGCCTATGCTATT+GGG | - | chr5_2:29104507-29104526 | None:intergenic | 45.0% |
| CCCCTTTGAACCTTACTTTG+AGG | + | chr5_2:29104764-29104783 | Msa0766790:intron | 45.0% | |
| ATGAGACTCAGGTAGAGACT+CGG | + | chr5_2:29104876-29104895 | Msa0766790:intron | 45.0% | |
| GAAGCCCGTTTAGCAAACAA+AGG | + | chr5_2:29105365-29105384 | Msa0766790:intron | 45.0% | |
| ACCTGACGCGATACTCTTAA+AGG | + | chr5_2:29105682-29105701 | Msa0766790:CDS | 45.0% | |
| !! | TCCTTTAAGAGTATCGCGTC+AGG | - | chr5_2:29105686-29105705 | None:intergenic | 45.0% |
| GTTGCTGCTCATGATACAAC+CGG | + | chr5_2:29106532-29106551 | Msa0766790:CDS | 45.0% | |
| TGCAACAAGCCACTCACTAA+AGG | + | chr5_2:29106708-29106727 | Msa0766790:CDS | 45.0% | |
| ACCGAATCTTCTGCACAAGT+CGG | + | chr5_2:29106807-29106826 | Msa0766790:three_prime_UTR | 45.0% | |
| !! | ACCGACTTGTGCAGAAGATT+CGG | - | chr5_2:29106811-29106830 | None:intergenic | 45.0% |
| !!! | ATAATTATTTTAACTTTTAA+AGG | + | chr5_2:29102377-29102396 | Msa0766790:intron | 5.0% |
| !!! | TAATTATTTTAACTTTTAAA+GGG | + | chr5_2:29102378-29102397 | Msa0766790:intron | 5.0% |
| CTTCCCTCATCCACTAATGG+CGG | + | chr5_2:29099987-29100006 | Msa0766790:exon | 50.0% | |
| ! | GTTTCCGCCATTAGTGGATG+AGG | - | chr5_2:29099994-29100013 | None:intergenic | 50.0% |
| ! | CAGCGGATAGGTTGAGTGAA+GGG | - | chr5_2:29100024-29100043 | None:intergenic | 50.0% |
| ! | ACAGCGGATAGGTTGAGTGA+AGG | - | chr5_2:29100025-29100044 | None:intergenic | 50.0% |
| TGTCAGTGTCAGTGTCGTGT+TGG | + | chr5_2:29100123-29100142 | Msa0766790:intron | 50.0% | |
| TAGACCGTCTCTCAGCTATG+AGG | + | chr5_2:29100149-29100168 | Msa0766790:intron | 50.0% | |
| CATCTTCTCACAAGCCTCCT+GGG | + | chr5_2:29100325-29100344 | Msa0766790:CDS | 50.0% | |
| !! | ATGGATTGGAGCAAGAGACC+TGG | + | chr5_2:29100348-29100367 | Msa0766790:CDS | 50.0% |
| TCCTCACTCTCACGCTTATC+GGG | - | chr5_2:29100881-29100900 | None:intergenic | 50.0% | |
| GTCCTCACTCTCACGCTTAT+CGG | - | chr5_2:29100882-29100901 | None:intergenic | 50.0% | |
| CACGCTGAGAAAACTCGTGT+TGG | + | chr5_2:29100906-29100925 | Msa0766790:intron | 50.0% | |
| !! | CTCGTGTTGGTTTGTAGGGT+CGG | + | chr5_2:29100919-29100938 | Msa0766790:intron | 50.0% |
| !! | TGTTGGTTTGTAGGGTCGGT+TGG | + | chr5_2:29100923-29100942 | Msa0766790:intron | 50.0% |
| ! | GTGGTGCTCTCAGGTTCTTT+TGG | + | chr5_2:29101681-29101700 | Msa0766790:intron | 50.0% |
| ACAAAGCCTCCCTTGACAAG+AGG | - | chr5_2:29101756-29101775 | None:intergenic | 50.0% | |
| ! | ATCGTTAGAGCACTAGCCAG+AGG | + | chr5_2:29102559-29102578 | Msa0766790:CDS | 50.0% |
| TGCGTATCGCAGAACAACAG+TGG | + | chr5_2:29102922-29102941 | Msa0766790:intron | 50.0% | |
| GCTATAGCACTACGGCATAG+CGG | - | chr5_2:29102959-29102978 | None:intergenic | 50.0% | |
| TTCAGCCAATTTGTCTCCCG+TGG | + | chr5_2:29103686-29103705 | Msa0766790:CDS | 50.0% | |
| CTTAGCCACGGGAGACAAAT+TGG | - | chr5_2:29103694-29103713 | None:intergenic | 50.0% | |
| CAATTTGTCTCCCGTGGCTA+AGG | + | chr5_2:29103692-29103711 | Msa0766790:CDS | 50.0% | |
| AGTGGTTCGCTGCGATGTTT+AGG | - | chr5_2:29104317-29104336 | None:intergenic | 50.0% | |
| CCTATGCTATTGGGCCCTTT+AGG | - | chr5_2:29104498-29104517 | None:intergenic | 50.0% | |
| CCTAAAGGGCCCAATAGCAT+AGG | + | chr5_2:29104495-29104514 | Msa0766790:intron | 50.0% | |
| ! | GGTTAGTGGGCCTATGCTAT+TGG | - | chr5_2:29104508-29104527 | None:intergenic | 50.0% |
| TGCAGTGCTTGATGAGACTC+AGG | + | chr5_2:29104865-29104884 | Msa0766790:CDS | 50.0% | |
| GTCATCTGGCAGCATACTCA+AGG | + | chr5_2:29105004-29105023 | Msa0766790:CDS | 50.0% | |
| AGTATCGCGTCAGGTTCTGT+CGG | - | chr5_2:29105677-29105696 | None:intergenic | 50.0% | |
| CTGACAGCTGTTGCTGAAGA+TGG | + | chr5_2:29105787-29105806 | Msa0766790:intron | 50.0% | |
| CTGTTGCTGAAGATGGAAGC+TGG | + | chr5_2:29105794-29105813 | Msa0766790:CDS | 50.0% | |
| TGCTGAAGATGGAAGCTGGT+CGG | + | chr5_2:29105798-29105817 | Msa0766790:CDS | 50.0% | |
| CTCACGGACTCACGATGATT+TGG | - | chr5_2:29106313-29106332 | None:intergenic | 50.0% | |
| ATCATCGTGAGTCCGTGAGT+AGG | + | chr5_2:29106314-29106333 | Msa0766790:intron | 50.0% | |
| TCATCGTGAGTCCGTGAGTA+GGG | + | chr5_2:29106315-29106334 | Msa0766790:intron | 50.0% | |
| GCTGCAATGGTAGCAAAGCT+TGG | + | chr5_2:29106580-29106599 | Msa0766790:CDS | 50.0% | |
| ! | CATCAGGGATGCTGCTTCTA+AGG | - | chr5_2:29106747-29106766 | None:intergenic | 50.0% |
| CTGTTCCAAGCCAGTCATCA+GGG | - | chr5_2:29106762-29106781 | None:intergenic | 50.0% | |
| ACTGTTCCAAGCCAGTCATC+AGG | - | chr5_2:29106763-29106782 | None:intergenic | 50.0% | |
| GCATCTTCTCACAAGCCTCC+TGG | + | chr5_2:29100324-29100343 | Msa0766790:CDS | 55.0% | |
| TTCTCACAAGCCTCCTGGGA+TGG | + | chr5_2:29100329-29100348 | Msa0766790:CDS | 55.0% | |
| ACAAGCCTCCTGGGATGGAT+TGG | + | chr5_2:29100334-29100353 | Msa0766790:CDS | 55.0% | |
| TTGCTCCAATCCATCCCAGG+AGG | - | chr5_2:29100342-29100361 | None:intergenic | 55.0% | |
| CTCTTGCTCCAATCCATCCC+AGG | - | chr5_2:29100345-29100364 | None:intergenic | 55.0% | |
| TCCCGATAAGCGTGAGAGTG+AGG | + | chr5_2:29100877-29100896 | Msa0766790:intron | 55.0% | |
| TGGCTCAGCTAGCTCCTAAG+TGG | - | chr5_2:29101895-29101914 | None:intergenic | 55.0% | |
| ! | GATGATTTGGCGCGCTACTG+TGG | - | chr5_2:29106300-29106319 | None:intergenic | 55.0% |
| CATCGTGAGTCCGTGAGTAG+GGG | + | chr5_2:29106316-29106335 | Msa0766790:intron | 55.0% | |
| GCTGCTCATGATACAACCGG+TGG | + | chr5_2:29106535-29106554 | Msa0766790:CDS | 55.0% | |
| GAAGCAGCATCCCTGATGAC+TGG | + | chr5_2:29106749-29106768 | Msa0766790:CDS | 55.0% | |
| ! | AGCATCCCTGATGACTGGCT+TGG | + | chr5_2:29106754-29106773 | Msa0766790:CDS | 55.0% |
| TCGCGTCAGGTTCTGTCGGT+GGG | - | chr5_2:29105673-29105692 | None:intergenic | 60.0% | |
| ATCGCGTCAGGTTCTGTCGG+TGG | - | chr5_2:29105674-29105693 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 29099922 | 29107104 | 29099922 | ID=Msa0766790;Name=Msa0766790 |
| chr5_2 | mRNA | 29099922 | 29107104 | 29099922 | ID=Msa0766790-mRNA-1;Parent=Msa0766790;Name=Msa0766790-mRNA-1;_AED=0.20;_eAED=0.20;_QI=81|0.90|0.91|1|1|1|12|303|328 |
| chr5_2 | exon | 29099922 | 29100057 | 29099922 | ID=Msa0766790-mRNA-1:exon:11128;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29100232 | 29100456 | 29100232 | ID=Msa0766790-mRNA-1:exon:11129;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29101694 | 29101791 | 29101694 | ID=Msa0766790-mRNA-1:exon:11130;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29102538 | 29102580 | 29102538 | ID=Msa0766790-mRNA-1:exon:11131;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29103496 | 29103557 | 29103496 | ID=Msa0766790-mRNA-1:exon:11132;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29103681 | 29103737 | 29103681 | ID=Msa0766790-mRNA-1:exon:11133;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29104851 | 29104886 | 29104851 | ID=Msa0766790-mRNA-1:exon:11134;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29104970 | 29105047 | 29104970 | ID=Msa0766790-mRNA-1:exon:11135;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29105632 | 29105710 | 29105632 | ID=Msa0766790-mRNA-1:exon:11136;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29105794 | 29105847 | 29105794 | ID=Msa0766790-mRNA-1:exon:11137;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29106521 | 29106624 | 29106521 | ID=Msa0766790-mRNA-1:exon:11138;Parent=Msa0766790-mRNA-1 |
| chr5_2 | exon | 29106706 | 29107104 | 29106706 | ID=Msa0766790-mRNA-1:exon:11139;Parent=Msa0766790-mRNA-1 |
| chr5_2 | five_prime_UTR | 29099922 | 29100002 | 29099922 | ID=Msa0766790-mRNA-1:five_prime_utr;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29100003 | 29100057 | 29100003 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29100232 | 29100456 | 29100232 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29101694 | 29101791 | 29101694 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29102538 | 29102580 | 29102538 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29103496 | 29103557 | 29103496 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29103681 | 29103737 | 29103681 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29104851 | 29104886 | 29104851 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29104970 | 29105047 | 29104970 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29105632 | 29105710 | 29105632 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29105794 | 29105847 | 29105794 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29106521 | 29106624 | 29106521 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | CDS | 29106706 | 29106801 | 29106706 | ID=Msa0766790-mRNA-1:cds;Parent=Msa0766790-mRNA-1 |
| chr5_2 | three_prime_UTR | 29106802 | 29107104 | 29106802 | ID=Msa0766790-mRNA-1:three_prime_utr;Parent=Msa0766790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
