Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006380 | Msa0820720 | 0.803014 | 4.265854e-49 | -8.615850e-47 |
| Msa0032430 | Msa0820720 | 0.818570 | 1.829598e-52 | -8.615850e-47 |
| Msa0079380 | Msa0820720 | 0.813713 | 2.226986e-51 | -8.615850e-47 |
| Msa0095860 | Msa0820720 | 0.870630 | 1.262034e-66 | -8.615850e-47 |
| Msa0612000 | Msa0820720 | 0.947828 | 3.138597e-106 | -8.615850e-47 |
| Msa0636800 | Msa0820720 | 0.817764 | 2.784899e-52 | -8.615850e-47 |
| Msa0649110 | Msa0820720 | 0.818957 | 1.494559e-52 | -8.615850e-47 |
| Msa0681270 | Msa0820720 | 0.800083 | 1.702377e-48 | -8.615850e-47 |
| Msa0758760 | Msa0820720 | 0.803831 | 2.889321e-49 | -8.615850e-47 |
| Msa0765910 | Msa0820720 | 0.827335 | 1.655660e-54 | -8.615850e-47 |
| Msa0766790 | Msa0820720 | 0.800617 | 1.325124e-48 | -8.615850e-47 |
| Msa0820720 | Msa0888130 | 0.805217 | 1.485147e-49 | -8.615850e-47 |
| Msa0820720 | Msa0892120 | 0.809357 | 1.969638e-50 | -8.615850e-47 |
| Msa0820720 | Msa0945970 | 0.807377 | 5.207313e-50 | -8.615850e-47 |
| Msa0820720 | Msa0974070 | 0.811275 | 7.595452e-51 | -8.615850e-47 |
| Msa0820720 | Msa1042690 | 0.953412 | 2.905030e-111 | -8.615850e-47 |
| Msa0820720 | Msa1075650 | 0.810134 | 1.340238e-50 | -8.615850e-47 |
| Msa0820720 | Msa1181250 | 0.807008 | 6.235307e-50 | -8.615850e-47 |
| Msa0820720 | Msa1181330 | 0.803981 | 2.689317e-49 | -8.615850e-47 |
| Msa0820720 | Msa1181910 | 0.838158 | 3.396355e-57 | -8.615850e-47 |
| Msa0820720 | Msa1297160 | 0.964836 | 7.846427e-124 | -8.615850e-47 |
| Msa0820720 | Msa1412530 | 0.830042 | 3.669131e-55 | -8.615850e-47 |
| Msa0172070 | Msa0820720 | 0.821642 | 3.622372e-53 | -8.615850e-47 |
| Msa0180500 | Msa0820720 | 0.801766 | 7.713505e-49 | -8.615850e-47 |
| Msa0446950 | Msa0820720 | 0.970259 | 2.400679e-131 | -8.615850e-47 |
| Msa0467380 | Msa0820720 | 0.803044 | 4.206114e-49 | -8.615850e-47 |
| Msa0328810 | Msa0820720 | 0.809451 | 1.879714e-50 | -8.615850e-47 |
| Msa0602390 | Msa0820720 | 0.870230 | 1.707362e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTTGTGAAGATAAA+AGG | 0.212182 | 5_3:-58243779 | None:intergenic |
| GTGATCTCATCCAGGATGAT+AGG | 0.356626 | 5_3:-58244496 | None:intergenic |
| CCAGGATGATAGGGTGGATA+GGG | 0.403549 | 5_3:-58244486 | None:intergenic |
| ATGTTGAAGGAGGCAAGAAC+TGG | 0.403774 | 5_3:+58244383 | Msa0820720:CDS |
| TAAGGACGGGAAGGAACATT+TGG | 0.428961 | 5_3:+58243981 | Msa0820720:CDS |
| TCTTATAAAATCATCATGAT+AGG | 0.434799 | 5_3:-58244558 | None:intergenic |
| GCAAGAGGTGTGATGGCAGC+AGG | 0.439246 | 5_3:-58244427 | None:intergenic |
| GAAGAAGCACGAGAAAATAA+AGG | 0.445989 | 5_3:+58242728 | Msa0820720:CDS |
| AAATGTTCCTTCCCGTCCTT+AGG | 0.450368 | 5_3:-58243979 | None:intergenic |
| TGATGGCAGCAGGGGTAAGT+TGG | 0.456592 | 5_3:-58244417 | None:intergenic |
| CATACTACCTCTGCTAAGAT+TGG | 0.469905 | 5_3:+58244451 | Msa0820720:CDS |
| CCCTATCCACCCTATCATCC+TGG | 0.477480 | 5_3:+58244486 | Msa0820720:CDS |
| ACCATGTTGCAGAATGTTGA+AGG | 0.481802 | 5_3:+58244370 | Msa0820720:CDS |
| TAAGATAGTAACATATCCTA+AGG | 0.501123 | 5_3:+58243963 | Msa0820720:intron |
| ATTCTGCAACATGGTGGAAG+GGG | 0.513075 | 5_3:-58244362 | None:intergenic |
| TTGCAGGAGTGATCTCATCC+AGG | 0.524797 | 5_3:-58244504 | None:intergenic |
| TGTCTTTGAACAACAAGTGC+AGG | 0.532648 | 5_3:+58243745 | Msa0820720:CDS |
| AAAATCATCATGATAGGAAG+AGG | 0.535692 | 5_3:-58244552 | None:intergenic |
| ACATTCTGCAACATGGTGGA+AGG | 0.539324 | 5_3:-58244364 | None:intergenic |
| TGATCTCATCCAGGATGATA+GGG | 0.550931 | 5_3:-58244495 | None:intergenic |
| TAGTAACATATCCTAAGGAC+GGG | 0.551671 | 5_3:+58243968 | Msa0820720:CDS |
| TCCTTCAACATTCTGCAACA+TGG | 0.556193 | 5_3:-58244371 | None:intergenic |
| CATTCTGCAACATGGTGGAA+GGG | 0.560478 | 5_3:-58244363 | None:intergenic |
| AGTATGAGCAAGAGGTGTGA+TGG | 0.566077 | 5_3:-58244434 | None:intergenic |
| GATGGTCATTGTTGATGCTA+AGG | 0.581330 | 5_3:+58244005 | Msa0820720:CDS |
| TCCAGGATGATAGGGTGGAT+AGG | 0.585429 | 5_3:-58244487 | None:intergenic |
| CAAGAGGTGTGATGGCAGCA+GGG | 0.589536 | 5_3:-58244426 | None:intergenic |
| GCAGAGGTAGTATGAGCAAG+AGG | 0.599567 | 5_3:-58244442 | None:intergenic |
| ATAGTAACATATCCTAAGGA+CGG | 0.602531 | 5_3:+58243967 | Msa0820720:CDS |
| CGGGAAGGAACATTTGGAGA+TGG | 0.612772 | 5_3:+58243987 | Msa0820720:CDS |
| TGTTGAAGGAGGCAAGAACT+GGG | 0.613431 | 5_3:+58244384 | Msa0820720:CDS |
| AACATATCCTAAGGACGGGA+AGG | 0.619664 | 5_3:+58243972 | Msa0820720:CDS |
| CAGGATGATAGGGTGGATAG+GGG | 0.620934 | 5_3:-58244485 | None:intergenic |
| AAGAGGTGTGATGGCAGCAG+GGG | 0.623171 | 5_3:-58244425 | None:intergenic |
| TTCAACATTCTGCAACATGG+TGG | 0.658953 | 5_3:-58244368 | None:intergenic |
| TCTCATCCAGGATGATAGGG+TGG | 0.663515 | 5_3:-58244492 | None:intergenic |
| ACTTGAACCAATCTTAGCAG+AGG | 0.665354 | 5_3:-58244458 | None:intergenic |
| ATGTTGCAGAATGTTGAAGG+AGG | 0.685850 | 5_3:+58244373 | Msa0820720:CDS |
| TATGATTTAGGACACAAATG+TGG | 0.703373 | 5_3:+58244170 | Msa0820720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATGTATAAAACAA+TGG | + | chr5_3:58243073-58243092 | Msa0820720:intron | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | - | chr5_3:58243105-58243124 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | - | chr5_3:58243193-58243212 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | + | chr5_3:58243284-58243303 | Msa0820720:intron | 10.0% |
| !!! | ATATTTTATGTATAAAACAA+TGG | + | chr5_3:58243073-58243092 | Msa0820720:intron | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | - | chr5_3:58243105-58243124 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | - | chr5_3:58243193-58243212 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | + | chr5_3:58243284-58243303 | Msa0820720:intron | 10.0% |
| !!! | AACAGTAATTAATTCTTTTT+TGG | + | chr5_3:58242778-58242797 | Msa0820720:intron | 15.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | + | chr5_3:58243108-58243127 | Msa0820720:intron | 15.0% |
| !!! | AACAGTAATTAATTCTTTTT+TGG | + | chr5_3:58242778-58242797 | Msa0820720:intron | 15.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | + | chr5_3:58243108-58243127 | Msa0820720:intron | 15.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | + | chr5_3:58242786-58242805 | Msa0820720:intron | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | - | chr5_3:58243042-58243061 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | - | chr5_3:58243399-58243418 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | + | chr5_3:58243398-58243417 | Msa0820720:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | + | chr5_3:58243860-58243879 | Msa0820720:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | - | chr5_3:58243907-58243926 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | - | chr5_3:58243945-58243964 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | - | chr5_3:58244279-58244298 | None:intergenic | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | + | chr5_3:58242786-58242805 | Msa0820720:intron | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | - | chr5_3:58243042-58243061 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | - | chr5_3:58243399-58243418 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | + | chr5_3:58243398-58243417 | Msa0820720:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | + | chr5_3:58243860-58243879 | Msa0820720:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | - | chr5_3:58243907-58243926 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | - | chr5_3:58243945-58243964 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | - | chr5_3:58244279-58244298 | None:intergenic | 20.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | + | chr5_3:58242998-58243017 | Msa0820720:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | + | chr5_3:58243111-58243130 | Msa0820720:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | - | chr5_3:58243311-58243330 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | - | chr5_3:58243391-58243410 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | - | chr5_3:58243468-58243487 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | + | chr5_3:58243655-58243674 | Msa0820720:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | - | chr5_3:58243890-58243909 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | + | chr5_3:58243963-58243982 | Msa0820720:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | - | chr5_3:58244066-58244085 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | + | chr5_3:58244236-58244255 | Msa0820720:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | + | chr5_3:58244525-58244544 | Msa0820720:CDS | 25.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | + | chr5_3:58242998-58243017 | Msa0820720:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | + | chr5_3:58243111-58243130 | Msa0820720:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | - | chr5_3:58243311-58243330 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | - | chr5_3:58243391-58243410 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | - | chr5_3:58243468-58243487 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | + | chr5_3:58243655-58243674 | Msa0820720:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | - | chr5_3:58243890-58243909 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | + | chr5_3:58243963-58243982 | Msa0820720:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | - | chr5_3:58244066-58244085 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | + | chr5_3:58244236-58244255 | Msa0820720:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | + | chr5_3:58244525-58244544 | Msa0820720:CDS | 25.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | - | chr5_3:58242897-58242916 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | - | chr5_3:58242898-58242917 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | - | chr5_3:58243349-58243368 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | - | chr5_3:58243476-58243495 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | + | chr5_3:58243487-58243506 | Msa0820720:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | - | chr5_3:58243514-58243533 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | + | chr5_3:58243775-58243794 | Msa0820720:CDS | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | - | chr5_3:58243782-58243801 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | + | chr5_3:58243967-58243986 | Msa0820720:CDS | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | - | chr5_3:58244049-58244068 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | + | chr5_3:58244089-58244108 | Msa0820720:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | + | chr5_3:58244090-58244109 | Msa0820720:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | + | chr5_3:58244158-58244177 | Msa0820720:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | + | chr5_3:58244170-58244189 | Msa0820720:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+CGG | + | chr5_3:58244250-58244269 | Msa0820720:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | - | chr5_3:58244523-58244542 | None:intergenic | 30.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | - | chr5_3:58242897-58242916 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | - | chr5_3:58242898-58242917 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | - | chr5_3:58243349-58243368 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | - | chr5_3:58243476-58243495 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | + | chr5_3:58243487-58243506 | Msa0820720:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | - | chr5_3:58243514-58243533 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | + | chr5_3:58243775-58243794 | Msa0820720:CDS | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | - | chr5_3:58243782-58243801 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | + | chr5_3:58243967-58243986 | Msa0820720:CDS | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | - | chr5_3:58244049-58244068 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | + | chr5_3:58244089-58244108 | Msa0820720:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | + | chr5_3:58244090-58244109 | Msa0820720:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | + | chr5_3:58244158-58244177 | Msa0820720:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | + | chr5_3:58244170-58244189 | Msa0820720:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+CGG | + | chr5_3:58244250-58244269 | Msa0820720:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | - | chr5_3:58244523-58244542 | None:intergenic | 30.0% |
| ! | GAAGAAGCACGAGAAAATAA+AGG | + | chr5_3:58242728-58242747 | Msa0820720:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | + | chr5_3:58242743-58242762 | Msa0820720:intron | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | + | chr5_3:58242744-58242763 | Msa0820720:intron | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | + | chr5_3:58242886-58242905 | Msa0820720:intron | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | - | chr5_3:58243361-58243380 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | + | chr5_3:58243516-58243535 | Msa0820720:intron | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | - | chr5_3:58243932-58243951 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | + | chr5_3:58243968-58243987 | Msa0820720:CDS | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | - | chr5_3:58244156-58244175 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | + | chr5_3:58244328-58244347 | Msa0820720:intron | 35.0% | |
| ! | GAAGAAGCACGAGAAAATAA+AGG | + | chr5_3:58242728-58242747 | Msa0820720:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | + | chr5_3:58242743-58242762 | Msa0820720:intron | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | + | chr5_3:58242744-58242763 | Msa0820720:intron | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | + | chr5_3:58242886-58242905 | Msa0820720:intron | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | - | chr5_3:58243361-58243380 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | + | chr5_3:58243516-58243535 | Msa0820720:intron | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | - | chr5_3:58243932-58243951 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | + | chr5_3:58243968-58243987 | Msa0820720:CDS | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | - | chr5_3:58244156-58244175 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | + | chr5_3:58244328-58244347 | Msa0820720:intron | 35.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | + | chr5_3:58242745-58242764 | Msa0820720:intron | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | + | chr5_3:58243559-58243578 | Msa0820720:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | - | chr5_3:58243563-58243582 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | + | chr5_3:58243745-58243764 | Msa0820720:CDS | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | + | chr5_3:58244005-58244024 | Msa0820720:CDS | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | - | chr5_3:58244371-58244390 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | + | chr5_3:58244370-58244389 | Msa0820720:CDS | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | - | chr5_3:58244374-58244393 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | + | chr5_3:58244373-58244392 | Msa0820720:CDS | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | + | chr5_3:58244451-58244470 | Msa0820720:CDS | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | - | chr5_3:58244461-58244480 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | - | chr5_3:58244498-58244517 | None:intergenic | 40.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | + | chr5_3:58242745-58242764 | Msa0820720:intron | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | + | chr5_3:58243559-58243578 | Msa0820720:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | - | chr5_3:58243563-58243582 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | + | chr5_3:58243745-58243764 | Msa0820720:CDS | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | + | chr5_3:58244005-58244024 | Msa0820720:CDS | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | - | chr5_3:58244371-58244390 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | + | chr5_3:58244370-58244389 | Msa0820720:CDS | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | - | chr5_3:58244374-58244393 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | + | chr5_3:58244373-58244392 | Msa0820720:CDS | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | + | chr5_3:58244451-58244470 | Msa0820720:CDS | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | - | chr5_3:58244461-58244480 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | - | chr5_3:58244498-58244517 | None:intergenic | 40.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | + | chr5_3:58242878-58242897 | Msa0820720:intron | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | + | chr5_3:58243549-58243568 | Msa0820720:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | + | chr5_3:58243972-58243991 | Msa0820720:CDS | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | - | chr5_3:58243982-58244001 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | + | chr5_3:58243981-58244000 | Msa0820720:CDS | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | - | chr5_3:58244365-58244384 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | - | chr5_3:58244366-58244385 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | - | chr5_3:58244367-58244386 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | + | chr5_3:58244383-58244402 | Msa0820720:CDS | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | + | chr5_3:58244384-58244403 | Msa0820720:CDS | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | - | chr5_3:58244437-58244456 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | - | chr5_3:58244499-58244518 | None:intergenic | 45.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | + | chr5_3:58242878-58242897 | Msa0820720:intron | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | + | chr5_3:58243549-58243568 | Msa0820720:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | + | chr5_3:58243972-58243991 | Msa0820720:CDS | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | - | chr5_3:58243982-58244001 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | + | chr5_3:58243981-58244000 | Msa0820720:CDS | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | - | chr5_3:58244365-58244384 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | - | chr5_3:58244366-58244385 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | - | chr5_3:58244367-58244386 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | + | chr5_3:58244383-58244402 | Msa0820720:CDS | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | + | chr5_3:58244384-58244403 | Msa0820720:CDS | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | - | chr5_3:58244437-58244456 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | - | chr5_3:58244499-58244518 | None:intergenic | 45.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | + | chr5_3:58243987-58244006 | Msa0820720:CDS | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | - | chr5_3:58244303-58244322 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | - | chr5_3:58244445-58244464 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | - | chr5_3:58244488-58244507 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | - | chr5_3:58244489-58244508 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | - | chr5_3:58244490-58244509 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | - | chr5_3:58244495-58244514 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | - | chr5_3:58244507-58244526 | None:intergenic | 50.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | + | chr5_3:58243987-58244006 | Msa0820720:CDS | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | - | chr5_3:58244303-58244322 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | - | chr5_3:58244445-58244464 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | - | chr5_3:58244488-58244507 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | - | chr5_3:58244489-58244508 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | - | chr5_3:58244490-58244509 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | - | chr5_3:58244495-58244514 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | - | chr5_3:58244507-58244526 | None:intergenic | 50.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | - | chr5_3:58244420-58244439 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | - | chr5_3:58244428-58244447 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | - | chr5_3:58244429-58244448 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | + | chr5_3:58244486-58244505 | Msa0820720:CDS | 55.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | - | chr5_3:58244420-58244439 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | - | chr5_3:58244428-58244447 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | - | chr5_3:58244429-58244448 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | + | chr5_3:58244486-58244505 | Msa0820720:CDS | 55.0% | |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | - | chr5_3:58244430-58244449 | None:intergenic | 60.0% |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | - | chr5_3:58244430-58244449 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 58242725 | 58244567 | 58242725 | ID=Msa0820720;Name=Msa0820720 |
| chr5_3 | mRNA | 58242725 | 58244567 | 58242725 | ID=Msa0820720-mRNA-1;Parent=Msa0820720;Name=Msa0820720-mRNA-1;_AED=0.44;_eAED=0.76;_QI=0|0|0|0.8|1|1|5|0|133 |
| chr5_3 | exon | 58242725 | 58242753 | 58242725 | ID=Msa0820720-mRNA-1:exon:17696;Parent=Msa0820720-mRNA-1 |
| chr5_3 | exon | 58243736 | 58243796 | 58243736 | ID=Msa0820720-mRNA-1:exon:17697;Parent=Msa0820720-mRNA-1 |
| chr5_3 | exon | 58243967 | 58244026 | 58243967 | ID=Msa0820720-mRNA-1:exon:17698;Parent=Msa0820720-mRNA-1 |
| chr5_3 | exon | 58244180 | 58244218 | 58244180 | ID=Msa0820720-mRNA-1:exon:17699;Parent=Msa0820720-mRNA-1 |
| chr5_3 | exon | 58244355 | 58244567 | 58244355 | ID=Msa0820720-mRNA-1:exon:17700;Parent=Msa0820720-mRNA-1 |
| chr5_3 | CDS | 58242725 | 58242753 | 58242725 | ID=Msa0820720-mRNA-1:cds;Parent=Msa0820720-mRNA-1 |
| chr5_3 | CDS | 58243736 | 58243796 | 58243736 | ID=Msa0820720-mRNA-1:cds;Parent=Msa0820720-mRNA-1 |
| chr5_3 | CDS | 58243967 | 58244026 | 58243967 | ID=Msa0820720-mRNA-1:cds;Parent=Msa0820720-mRNA-1 |
| chr5_3 | CDS | 58244180 | 58244218 | 58244180 | ID=Msa0820720-mRNA-1:cds;Parent=Msa0820720-mRNA-1 |
| chr5_3 | CDS | 58244355 | 58244567 | 58244355 | ID=Msa0820720-mRNA-1:cds;Parent=Msa0820720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
