AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0767060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767060 MtrunA17_Chr5g0418551 95.500 200 9 0 1 200 5 204 1.63e-125 359
Msa0767060 MtrunA17_Chr5g0418551 36.429 140 84 2 19 158 94 228 2.30e-16 77.4
Msa0767060 MtrunA17_Chr7g0263471 33.690 187 119 4 9 192 117 301 8.05e-20 90.1
Msa0767060 MtrunA17_Chr5g0405451 28.235 170 86 3 85 218 268 437 3.70e-17 81.6
Msa0767060 MtrunA17_Chr2g0303671 35.659 129 80 3 75 202 170 296 3.44e-16 77.8
Msa0767060 MtrunA17_Chr1g0211241 33.121 157 96 4 47 199 199 350 7.09e-16 78.6
Msa0767060 MtrunA17_Chr1g0211241 29.193 161 106 3 33 192 123 276 1.11e-12 68.6
Msa0767060 MtrunA17_Chr1g0212971 32.447 188 120 5 9 192 125 309 8.13e-16 78.2
Msa0767060 MtrunA17_Chr1g0196261 30.539 167 92 2 47 192 250 413 9.44e-16 77.8
Msa0767060 MtrunA17_Chr1g0211231 35.099 151 92 3 45 192 58 205 1.68e-15 77.0
Msa0767060 MtrunA17_Chr7g0276681 37.143 140 81 5 54 189 154 290 2.82e-15 76.6
Msa0767060 MtrunA17_Chr7g0276681 35.088 171 102 6 37 205 171 334 3.68e-15 76.3
Msa0767060 MtrunA17_Chr3g0079591 38.889 126 70 1 71 189 202 327 3.27e-15 75.5
Msa0767060 MtrunA17_Chr3g0127131 34.821 112 70 1 90 201 241 349 3.31e-15 75.5
Msa0767060 MtrunA17_Chr3g0127131 41.860 86 50 0 69 154 253 338 1.29e-12 67.8
Msa0767060 MtrunA17_Chr5g0409271 34.559 136 87 1 54 189 15 148 2.08e-14 72.0
Msa0767060 MtrunA17_Chr5g0409271 34.899 149 91 4 9 156 5 148 1.01e-11 64.3
Msa0767060 MtrunA17_Chr5g0406201 30.303 165 111 2 43 206 294 455 3.37e-14 73.2
Msa0767060 MtrunA17_Chr6g0461061 29.891 184 110 4 6 189 303 467 3.92e-14 73.2
Msa0767060 MtrunA17_Chr6g0461061 30.061 163 91 2 48 189 274 434 8.43e-13 68.9
Msa0767060 MtrunA17_Chr6g0461061 31.008 129 89 0 65 193 156 284 3.33e-11 63.9
Msa0767060 MtrunA17_Chr4g0031491 33.163 196 103 6 15 189 12 200 4.40e-14 72.8
Msa0767060 MtrunA17_Chr4g0064931 35.461 141 85 3 51 188 104 241 6.60e-14 72.4
Msa0767060 MtrunA17_Chr4g0064931 28.671 143 99 2 51 192 37 177 9.63e-12 65.9
Msa0767060 MtrunA17_Chr8g0361891 29.146 199 115 4 22 194 139 337 8.74e-14 71.2
Msa0767060 MtrunA17_Chr5g0434371 36.036 111 66 1 61 171 632 737 1.73e-13 71.2
Msa0767060 MtrunA17_Chr5g0434371 33.553 152 96 2 47 198 585 731 1.51e-12 68.6
Msa0767060 MtrunA17_Chr4g0049351 33.333 117 75 2 79 192 116 232 3.17e-13 70.1
Msa0767060 MtrunA17_Chr4g0073161 33.333 153 76 6 54 192 122 262 6.87e-13 69.3
Msa0767060 MtrunA17_Chr1g0148981 31.579 152 100 2 37 184 559 710 7.30e-13 69.3
Msa0767060 MtrunA17_Chr1g0148981 29.577 142 94 3 47 187 642 778 5.35e-11 63.9
Msa0767060 MtrunA17_Chr5g0409081 37.000 100 57 2 83 176 26 125 2.13e-12 64.7
Msa0767060 MtrunA17_Chr2g0328031 30.319 188 111 5 19 189 15 199 3.34e-12 67.0
Msa0767060 MtrunA17_Chr5g0443471 38.554 83 51 0 94 176 58 140 3.48e-12 67.0
Msa0767060 MtrunA17_Chr3g0125011 40.000 90 54 0 104 193 38 127 4.34e-12 63.2
Msa0767060 MtrunA17_Chr3g0125011 30.882 136 87 3 1 136 8 136 6.15e-11 60.1
Msa0767060 MtrunA17_Chr1g0161231 32.258 186 109 6 16 192 57 234 5.13e-12 66.6
Msa0767060 MtrunA17_Chr7g0263421 31.694 183 120 4 10 189 44 224 6.24e-12 66.2
Msa0767060 MtrunA17_Chr8g0380551 39.583 96 55 1 97 192 117 209 6.48e-12 66.2
Msa0767060 MtrunA17_Chr7g0226271 29.609 179 113 5 19 192 447 617 6.88e-12 66.2
Msa0767060 MtrunA17_Chr7g0274241 32.278 158 103 4 37 193 41 195 1.23e-11 65.5
Msa0767060 MtrunA17_Chr2g0277651 30.070 143 98 1 34 176 486 626 2.70e-11 64.7
Msa0767060 MtrunA17_Chr3g0138141 38.542 96 57 1 89 182 102 197 3.06e-11 63.9
Msa0767060 MtrunA17_Chr4g0030551 29.944 177 113 5 1 175 131 298 5.31e-11 63.5
Msa0767060 MtrunA17_Chr2g0327711 31.579 171 103 6 37 199 53 217 8.79e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767060 AT2G03430.1 65.990 197 66 1 3 199 1 196 5.61e-90 269
Msa0767060 AT5G02620.4 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0767060 AT5G02620.4 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0767060 AT5G02620.1 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0767060 AT5G02620.1 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0767060 AT5G02620.3 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0767060 AT5G02620.3 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0767060 AT5G02620.5 34.807 181 113 4 16 193 57 235 2.36e-18 86.3
Msa0767060 AT5G02620.5 31.188 202 129 6 7 199 7 207 6.49e-14 72.8
Msa0767060 AT5G02620.2 34.807 181 113 4 16 193 57 235 2.36e-18 86.3
Msa0767060 AT5G02620.2 31.188 202 129 6 7 199 7 207 6.49e-14 72.8
Msa0767060 AT4G19150.1 33.333 147 93 2 54 200 20 161 4.37e-16 77.0
Msa0767060 AT4G19150.1 33.152 184 110 7 18 197 19 193 1.61e-13 69.7
Msa0767060 AT4G35450.5 41.000 100 59 0 90 189 230 329 2.19e-15 76.3
Msa0767060 AT4G35450.4 41.000 100 59 0 90 189 184 283 2.25e-15 75.9
Msa0767060 AT4G27780.1 38.000 100 62 0 90 189 237 336 2.61e-15 76.3
Msa0767060 AT4G27780.1 41.237 97 57 0 60 156 240 336 3.01e-13 70.1
Msa0767060 AT4G35450.2 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0767060 AT4G35450.3 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0767060 AT4G35450.1 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0767060 AT1G07710.2 32.597 181 116 5 22 199 108 285 4.05e-15 76.3
Msa0767060 AT1G07710.1 32.597 181 116 5 22 199 108 285 4.05e-15 76.3
Msa0767060 AT3G02850.1 34.211 152 98 2 34 185 497 646 9.16e-15 75.5
Msa0767060 AT3G02850.1 36.842 152 91 2 47 198 578 724 1.09e-14 75.5
Msa0767060 AT3G02850.2 34.211 152 98 2 34 185 497 646 1.16e-14 75.1
Msa0767060 AT3G02850.2 36.842 152 91 2 47 198 578 724 1.46e-14 75.1
Msa0767060 AT5G53470.1 39.796 98 59 0 59 156 224 321 1.41e-14 73.9
Msa0767060 AT5G53470.1 38.000 100 62 0 90 189 222 321 2.30e-14 73.2
Msa0767060 AT5G20350.1 34.752 141 86 3 51 188 99 236 3.13e-14 73.9
Msa0767060 AT5G20350.1 29.012 162 104 4 35 192 18 172 1.32e-13 72.0
Msa0767060 AT2G17390.1 39.000 100 61 0 90 189 224 323 3.20e-14 72.8
Msa0767060 AT5G66055.1 34.862 109 71 0 85 193 259 367 5.22e-14 72.8
Msa0767060 AT5G66055.1 30.061 163 109 3 54 214 264 423 8.44e-13 69.3
Msa0767060 AT2G31820.1 32.051 156 99 5 54 205 262 414 6.18e-14 73.2
Msa0767060 AT2G31820.1 31.694 183 120 4 10 189 184 364 2.01e-13 71.6
Msa0767060 AT2G31820.1 36.154 130 79 3 49 176 291 418 5.37e-13 70.1
Msa0767060 AT5G37500.1 30.899 178 116 3 22 199 538 708 7.54e-14 72.8
Msa0767060 AT5G37500.1 33.113 151 96 2 34 182 480 627 6.35e-13 70.1
Msa0767060 AT3G12360.2 29.940 167 113 3 9 173 111 275 1.57e-13 71.6
Msa0767060 AT3G12360.1 29.940 167 113 3 9 173 123 287 1.65e-13 71.6
Msa0767060 AT5G60070.1 31.122 196 118 8 22 207 115 303 1.65e-13 71.6
Msa0767060 AT5G60070.1 29.444 180 113 5 1 175 134 304 3.13e-12 67.8
Msa0767060 AT1G05640.1 31.720 186 122 4 10 192 148 331 2.59e-13 71.2
Msa0767060 AT1G05640.1 36.641 131 77 4 49 176 255 382 1.94e-12 68.6
Msa0767060 AT3G09550.2 30.435 184 123 4 9 189 144 325 2.61e-13 70.9
Msa0767060 AT3G09550.1 30.435 184 123 4 9 189 137 318 3.20e-13 70.9
Msa0767060 AT3G09550.3 30.435 184 123 4 9 189 137 318 3.20e-13 70.9
Msa0767060 AT5G40160.2 30.579 121 77 3 79 198 178 292 3.42e-13 69.3
Msa0767060 AT5G40160.2 28.696 115 82 0 85 199 151 265 1.55e-11 64.7
Msa0767060 AT5G57740.1 33.553 152 76 6 54 192 122 261 4.95e-13 70.1
Msa0767060 AT5G40160.1 29.771 131 87 4 79 206 178 306 6.63e-13 68.9
Msa0767060 AT2G14255.1 28.358 201 136 4 3 199 9 205 1.81e-12 68.6
Msa0767060 AT2G14255.1 26.582 158 113 2 57 213 31 186 5.53e-12 67.0
Msa0767060 AT2G14255.1 32.374 139 88 3 54 189 95 230 6.63e-12 66.6
Msa0767060 AT2G14255.1 27.132 129 82 2 90 206 28 156 2.68e-11 64.7
Msa0767060 AT3G04710.1 28.511 235 106 6 44 243 49 256 1.92e-12 68.2
Msa0767060 AT3G04710.3 27.803 223 89 5 44 199 273 490 2.22e-12 68.2
Msa0767060 AT3G04710.2 28.511 235 105 6 44 243 49 255 2.76e-12 67.8
Msa0767060 AT4G19150.2 32.759 116 74 2 86 200 26 138 6.97e-12 64.7
Msa0767060 AT3G59830.1 31.579 171 108 3 24 187 9 177 7.47e-12 66.2
Msa0767060 AT2G26650.1 40.244 82 49 0 101 182 533 614 9.79e-12 66.2
Msa0767060 AT2G26650.1 31.081 148 88 4 47 188 545 684 1.46e-11 65.9
Msa0767060 AT5G37500.2 31.034 145 95 2 55 199 591 730 1.03e-11 66.2
Msa0767060 AT5G37500.3 31.034 145 95 2 55 199 537 676 1.04e-11 66.2
Msa0767060 AT2G26650.2 40.244 82 49 0 101 182 428 509 1.08e-11 66.2
Msa0767060 AT2G26650.2 31.081 148 88 4 47 188 440 579 1.49e-11 65.9
Msa0767060 AT5G61230.1 37.000 100 57 2 83 176 26 125 1.11e-11 63.2
Msa0767060 AT5G66055.2 32.673 101 68 0 85 185 259 359 1.20e-11 65.5
Msa0767060 AT2G01680.1 30.939 181 112 5 16 189 60 234 1.41e-11 65.5
Msa0767060 AT2G25600.1 31.690 142 92 2 47 188 574 710 1.53e-11 65.9
Msa0767060 AT5G12320.1 35.644 101 65 0 93 193 18 118 5.93e-11 60.1
Msa0767060 AT2G31800.1 37.500 96 57 1 97 192 86 178 7.21e-11 63.5
Msa0767060 AT5G07270.1 30.872 149 84 4 51 189 113 252 8.46e-11 63.2
Msa0767060 AT3G24530.2 32.867 143 87 4 54 187 6 148 9.61e-11 62.8

Find 86 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTAATGTTGGCATTA+TGG 0.170106 5_2:+29584820 None:intergenic
CATTGGGAATTCGGAGATTC+TGG 0.207112 5_2:-29586645 Msa0767060:CDS
CTTCATGTTGCCGCTTCTTT+TGG 0.229765 5_2:-29587358 Msa0767060:CDS
AATATTAATGTTGGCATTAT+GGG 0.246874 5_2:+29584821 None:intergenic
GAATAAATCCTTCTCTTCTA+TGG 0.255756 5_2:+29587480 None:intergenic
GCCACTTTGGCTTGCAATTA+CGG 0.256239 5_2:-29583512 Msa0767060:CDS
AATCTTCATCCGACCTTTGC+TGG 0.277498 5_2:+29584860 None:intergenic
TAATGCCAACATTAATATTA+AGG 0.292110 5_2:-29584817 Msa0767060:CDS
AGGTAGCACTCCTTCTTATA+AGG 0.293510 5_2:-29582527 Msa0767060:CDS
TGCTGCCAGCATTGGGAATT+CGG 0.328342 5_2:-29586654 Msa0767060:CDS
TGCTAGCTGCCCGATGCAAC+GGG 0.338078 5_2:+29584639 None:intergenic
TGGCCGGGCCAGATTGCATT+TGG 0.380923 5_2:+29583253 None:intergenic
AACTAATGTTTATGATCCTT+CGG 0.384179 5_2:-29582221 Msa0767060:three_prime_UTR
TTGCATCGGGCAGCTAGCAC+TGG 0.385320 5_2:-29584635 Msa0767060:CDS
TCAGCCGATGAGCCGCATTC+AGG 0.385366 5_2:-29583456 Msa0767060:CDS
ATTCATTCTGCTGCCAGCAT+TGG 0.404125 5_2:-29586662 Msa0767060:CDS
TTCATTCTGCTGCCAGCATT+GGG 0.422094 5_2:-29586661 Msa0767060:CDS
TGGTTCCACCCCGTTGCATC+GGG 0.426096 5_2:-29584648 Msa0767060:CDS
CAAATCACGGCACTCATTAG+AGG 0.434441 5_2:+29584539 None:intergenic
TTGGTTCCACCCCGTTGCAT+CGG 0.439880 5_2:-29584649 Msa0767060:CDS
GTATCATTCAAGCATGGCCT+TGG 0.445360 5_2:+29582410 None:intergenic
TCGAGTGCATACCACATCTT+AGG 0.453106 5_2:+29583284 None:intergenic
CTTGTCCTTAATATTAATGT+TGG 0.455131 5_2:+29584812 None:intergenic
AATGGTCATACACATAAAAC+AGG 0.457405 5_2:+29582350 None:intergenic
GCATTCTTAACCAGTATTTG+AGG 0.457637 5_2:-29582264 Msa0767060:three_prime_UTR
GTTTCTTAGAGAAAGTGCTT+TGG 0.459972 5_2:+29587399 None:intergenic
TAGTGGTGATGAAGAAAGTT+GGG 0.461931 5_2:-29586690 Msa0767060:CDS
GTGCTAGCTGCCCGATGCAA+CGG 0.466543 5_2:+29584638 None:intergenic
GTGACAATAACCTCAAATAC+TGG 0.472834 5_2:+29582254 None:intergenic
ATAGTGGTGATGAAGAAAGT+TGG 0.474854 5_2:-29586691 Msa0767060:CDS
CTGCTCCATGCCTTATAAGA+AGG 0.504054 5_2:+29582517 None:intergenic
GTTCCAAATGCAATCTGGCC+CGG 0.508184 5_2:-29583256 Msa0767060:CDS
GTGGATGTGGAGGACAAGGA+AGG 0.514850 5_2:-29582492 Msa0767060:CDS
TTTGCTGGCTGCATAGTGTA+AGG 0.518159 5_2:+29584875 None:intergenic
CTCTTTGTTATAACAAATCA+CGG 0.520454 5_2:+29584526 None:intergenic
CACCTCAGCAGATGCATCAC+AGG 0.522750 5_2:+29586718 None:intergenic
GCCTCCTGAATGCGGCTCAT+CGG 0.529675 5_2:+29583452 None:intergenic
GTGTTTGTATCATTCAAGCA+TGG 0.530236 5_2:+29582404 None:intergenic
AAGGAAGGGTACACGGTGCT+TGG 0.531206 5_2:-29582477 Msa0767060:CDS
CGTGATTTGTTATAACAAAG+AGG 0.532092 5_2:-29584525 Msa0767060:intron
TTATTCAAAGCAGCAGAAGA+AGG 0.534236 5_2:-29587463 Msa0767060:CDS
GATACAAACACAAGAGAATG+AGG 0.535878 5_2:-29582392 Msa0767060:three_prime_UTR
AATCTCCGAATTCCCAATGC+TGG 0.540552 5_2:+29586649 None:intergenic
TTCAGGAGGCGTGCCACTCA+TGG 0.540890 5_2:-29583439 Msa0767060:intron
AAGAGACAGATATGCAAGGT+TGG 0.541804 5_2:+29582296 None:intergenic
TGACCATTGAGAGCATTCAA+TGG 0.542257 5_2:-29582335 Msa0767060:three_prime_UTR
TGTTGTCGATCACGCCACTT+TGG 0.547842 5_2:-29583525 Msa0767060:CDS
TGCATCGGGCAGCTAGCACT+GGG 0.548238 5_2:-29584634 Msa0767060:CDS
AAGCCATTGAATGCTCTCAA+TGG 0.548310 5_2:+29582332 None:intergenic
AAGTGGCGTGATCGACAACA+TGG 0.549497 5_2:+29583528 None:intergenic
CTGGAGGCTTTGTTGAACAA+AGG 0.556222 5_2:-29586626 Msa0767060:intron
GCACTCCTTCTTATAAGGCA+TGG 0.559998 5_2:-29582522 Msa0767060:CDS
TACGATATTCTCAAATCCGA+AGG 0.561962 5_2:+29582205 None:intergenic
TATAAGGCATGGAGCAGATG+TGG 0.564074 5_2:-29582511 Msa0767060:CDS
AGATGTGGATGTGGAGGACA+AGG 0.564628 5_2:-29582496 Msa0767060:CDS
CAACATTAATATTAAGGACA+AGG 0.567959 5_2:-29584811 Msa0767060:intron
ACAAGAAACCATAGAAGAGA+AGG 0.572266 5_2:-29587488 Msa0767060:CDS
TCCGTAATTGCAAGCCAAAG+TGG 0.574370 5_2:+29583511 None:intergenic
GTTGATGCTGTTGATAGAGC+TGG 0.574506 5_2:-29584569 Msa0767060:CDS
TTCAGAGGACAATGATTCGA+AGG 0.582576 5_2:+29587429 None:intergenic
GACAGATATGCAAGGTTGGT+AGG 0.582866 5_2:+29582300 None:intergenic
TGCTTTGGAGAGTGATTCAG+AGG 0.583109 5_2:+29587414 None:intergenic
AATATTGATTGATGCTGCCA+AGG 0.587026 5_2:-29582427 Msa0767060:CDS
TTACACTATGCAGCCAGCAA+AGG 0.589849 5_2:-29584873 Msa0767060:CDS
GCCGATGAGCCGCATTCAGG+AGG 0.590125 5_2:-29583453 Msa0767060:CDS
GCATGGAGCAGATGTGGATG+TGG 0.603022 5_2:-29582505 Msa0767060:CDS
CTCAGTGTTTGCCTAAGATG+TGG 0.603766 5_2:-29583295 Msa0767060:CDS
GCGCACCTTGACTGATGAGT+AGG 0.605713 5_2:+29583551 None:intergenic
TCTGCTGAGGTGATAAATAG+TGG 0.606346 5_2:-29586707 Msa0767060:CDS
ATGCTGGCAGCAGAATGAAT+CGG 0.606631 5_2:+29586665 None:intergenic
GTCCTGTGATGCATCTGCTG+AGG 0.610566 5_2:-29586720 Msa0767060:CDS
AGCTGCCCGATGCAACGGGG+TGG 0.618931 5_2:+29584643 None:intergenic
ACTATGCAGCCAGCAAAGGT+CGG 0.624620 5_2:-29584869 Msa0767060:CDS
AGTGGCACGCCTCCTGAATG+CGG 0.627127 5_2:+29583444 None:intergenic
TGGGAATTCGGAGATTCTGG+AGG 0.634438 5_2:-29586642 Msa0767060:CDS
AATCAAAGTAAACATGAACA+TGG 0.634829 5_2:-29587530 Msa0767060:exon
CTGAGAGTGACCAAAAGAAG+CGG 0.635993 5_2:+29587348 None:intergenic
GGAGGACAAGGAAGGGTACA+CGG 0.639207 5_2:-29582484 Msa0767060:CDS
ATTACGGAATTGCAGAGTGA+CGG 0.641799 5_2:-29583496 Msa0767060:CDS
TGGATGTGGAGGACAAGGAA+GGG 0.643078 5_2:-29582491 Msa0767060:CDS
ACTAACGATTTGACCATGAG+TGG 0.658513 5_2:+29583426 None:intergenic
TGGAGCAGATGTGGATGTGG+AGG 0.658645 5_2:-29582502 Msa0767060:CDS
GCAGACCTACTCATCAGTCA+AGG 0.659449 5_2:-29583556 Msa0767060:intron
AGTGGCGTGATCGACAACAT+GGG 0.670830 5_2:+29583529 None:intergenic
ACACAAGAGAATGAGGAACA+AGG 0.671800 5_2:-29582385 Msa0767060:three_prime_UTR
GCTAGCTGCCCGATGCAACG+GGG 0.716203 5_2:+29584640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTATGCAATTTA+AGG + chr5_2:29582476-29582495 None:intergenic 10.0%
!!! CATAAAAATTTAATCTTTTT+TGG - chr5_2:29582483-29582502 Msa0767060:CDS 10.0%
!! ATGTTAATATTAAAAACAAT+GGG - chr5_2:29584856-29584875 Msa0767060:CDS 10.0%
!! ATTCCAAAAATAAAATAAAA+TGG - chr5_2:29586837-29586856 Msa0767060:intron 10.0%
!!! AATCCATTTTATTTTATTTT+TGG + chr5_2:29586843-29586862 None:intergenic 10.0%
!! AACATAAAAGCTTATTTATT+TGG - chr5_2:29582687-29582706 Msa0767060:intron 15.0%
!! GATGTTAATATTAAAAACAA+TGG - chr5_2:29584855-29584874 Msa0767060:CDS 15.0%
!! TGTTAATATTAAAAACAATG+GGG - chr5_2:29584857-29584876 Msa0767060:CDS 15.0%
!! AATGTGATTATAATGAAAAT+GGG + chr5_2:29585037-29585056 None:intergenic 15.0%
!! TAATGTGATTATAATGAAAA+TGG + chr5_2:29585038-29585057 None:intergenic 15.0%
!! TATGATAAATTATACTCAAT+CGG + chr5_2:29585684-29585703 None:intergenic 15.0%
!!! AATAAATTGATTACAAGTTT+TGG - chr5_2:29585712-29585731 Msa0767060:intron 15.0%
!!! AAAAGAACATAATTTTACAT+GGG + chr5_2:29586541-29586560 None:intergenic 15.0%
!!! AAAAAGAACATAATTTTACA+TGG + chr5_2:29586542-29586561 None:intergenic 15.0%
!! ATAAAAATCTATTATGTGTT+TGG - chr5_2:29587209-29587228 Msa0767060:intron 15.0%
!!! TTCTGTTTTTTATAATGAGT+CGG - chr5_2:29582887-29582906 Msa0767060:intron 20.0%
!!! TAAGAGATTTAGAATCTATT+TGG - chr5_2:29583189-29583208 Msa0767060:intron 20.0%
!! ATAATCACTTGTACTATAAA+TGG - chr5_2:29583394-29583413 Msa0767060:intron 20.0%
!! ATTAACTTCTGATAGATTTA+GGG - chr5_2:29583451-29583470 Msa0767060:CDS 20.0%
!! AATAAGGTAAAAATAGCTTA+TGG + chr5_2:29583729-29583748 None:intergenic 20.0%
!! ATGGAACTATTTGTATAAAT+AGG + chr5_2:29584529-29584548 None:intergenic 20.0%
!! ATTTAGTTAGTTAGTTAGTT+GGG + chr5_2:29584595-29584614 None:intergenic 20.0%
!! AATTTAGTTAGTTAGTTAGT+TGG + chr5_2:29584596-29584615 None:intergenic 20.0%
!! ATATCCTAACAGTAATAATT+TGG - chr5_2:29584685-29584704 Msa0767060:intron 20.0%
!! TATCCTAACAGTAATAATTT+GGG - chr5_2:29584686-29584705 Msa0767060:intron 20.0%
!! GTTAATATTAAAAACAATGG+GGG - chr5_2:29584858-29584877 Msa0767060:CDS 20.0%
!! AATATTAATGTTGGCATTAT+GGG + chr5_2:29584946-29584965 None:intergenic 20.0%
!! TAATATTAATGTTGGCATTA+TGG + chr5_2:29584947-29584966 None:intergenic 20.0%
!! TAATGCCAACATTAATATTA+AGG - chr5_2:29584947-29584966 Msa0767060:intron 20.0%
!!! AATCATTCATATTAAGCTTT+TGG - chr5_2:29585748-29585767 Msa0767060:intron 20.0%
!! TAATGTGAAGAAATATTGTT+GGG + chr5_2:29586022-29586041 None:intergenic 20.0%
!! ATAATGTGAAGAAATATTGT+TGG + chr5_2:29586023-29586042 None:intergenic 20.0%
!!! TAATCGTATCAATTTTGTTT+TGG - chr5_2:29586434-29586453 Msa0767060:intron 20.0%
!!! TTTAAGATAATATAACAGTG+TGG + chr5_2:29586634-29586653 None:intergenic 20.0%
!!! ATTTGTTTCCATTTTTAATG+AGG - chr5_2:29586690-29586709 Msa0767060:CDS 20.0%
!!! TTTGTTTCCATTTTTAATGA+GGG - chr5_2:29586691-29586710 Msa0767060:CDS 20.0%
!! GAAAACAAAATAATAGAAAC+TGG + chr5_2:29586779-29586798 None:intergenic 20.0%
!! TCTTCTATTTAGTACTTAAA+AGG - chr5_2:29586906-29586925 Msa0767060:intron 20.0%
! AATCAAAGTAAACATGAACA+TGG - chr5_2:29582234-29582253 Msa0767060:three_prime_UTR 25.0%
! TTTGTATCAAAACCCTAAAT+TGG - chr5_2:29582507-29582526 Msa0767060:CDS 25.0%
! TTGTATCAAAACCCTAAATT+GGG - chr5_2:29582508-29582527 Msa0767060:CDS 25.0%
!!! TCTGTTTTTTATAATGAGTC+GGG - chr5_2:29582888-29582907 Msa0767060:intron 25.0%
!!! TTGGGTATTATTTTTTGTGA+AGG - chr5_2:29582917-29582936 Msa0767060:intron 25.0%
! TCAAAAGTAAAGACTCAATT+TGG + chr5_2:29582973-29582992 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCGAT+TGG - chr5_2:29583216-29583235 Msa0767060:CDS 25.0%
! CATTAACTTCTGATAGATTT+AGG - chr5_2:29583450-29583469 Msa0767060:CDS 25.0%
! TTTCATTTGTGATTATCTGT+TGG - chr5_2:29583648-29583667 Msa0767060:intron 25.0%
! CTAAAGATCATATGGAAATA+AGG + chr5_2:29583745-29583764 None:intergenic 25.0%
! CTTATTTCCATATGATCTTT+AGG - chr5_2:29583743-29583762 Msa0767060:intron 25.0%
! TTCATATCCTAAAGATCATA+TGG + chr5_2:29583753-29583772 None:intergenic 25.0%
!!! TTATGCTTTTTTATCGAAAC+AGG - chr5_2:29583815-29583834 Msa0767060:intron 25.0%
!!! TATGCTTTTTTATCGAAACA+GGG - chr5_2:29583816-29583835 Msa0767060:intron 25.0%
!!! GTTGGACTTTATTTTAAGAA+AGG - chr5_2:29583953-29583972 Msa0767060:intron 25.0%
!!! TATTTTAAGAAAGGTTCATG+TGG - chr5_2:29583962-29583981 Msa0767060:intron 25.0%
! AAGTACAATAATTAGATGAG+TGG - chr5_2:29583997-29584016 Msa0767060:intron 25.0%
!! AGTAAACCTTTAAGAACTAT+GGG + chr5_2:29584235-29584254 None:intergenic 25.0%
! CATAGACATTTGTAATTGTT+AGG - chr5_2:29584312-29584331 Msa0767060:intron 25.0%
!! TCTTTTGAATTTAATTCCCT+GGG + chr5_2:29584339-29584358 None:intergenic 25.0%
!! TTCTTTTGAATTTAATTCCC+TGG + chr5_2:29584340-29584359 None:intergenic 25.0%
! TATAGAAAAGTGGTATAGAA+TGG + chr5_2:29584668-29584687 None:intergenic 25.0%
! TTTCCCAAATTATTACTGTT+AGG + chr5_2:29584692-29584711 None:intergenic 25.0%
!! ACGTTCTTATTCTTCATTTT+TGG - chr5_2:29584824-29584843 Msa0767060:CDS 25.0%
!!! TCTTATTCTTCATTTTTGGT+AGG - chr5_2:29584828-29584847 Msa0767060:CDS 25.0%
! CTTGTCCTTAATATTAATGT+TGG + chr5_2:29584955-29584974 None:intergenic 25.0%
! CAACATTAATATTAAGGACA+AGG - chr5_2:29584953-29584972 Msa0767060:intron 25.0%
! TGATCATATTACAGTTTACA+AGG + chr5_2:29585093-29585112 None:intergenic 25.0%
! TTGTAAACTGTAATATGATC+AGG - chr5_2:29585092-29585111 Msa0767060:intron 25.0%
!! CTCTTTGTTATAACAAATCA+CGG + chr5_2:29585241-29585260 None:intergenic 25.0%
!! GTTCTTACAATTTTTATCGT+AGG - chr5_2:29585285-29585304 Msa0767060:intron 25.0%
!!! CAGTTGATTTTTCAATCAAT+GGG - chr5_2:29585418-29585437 Msa0767060:intron 25.0%
! GAAAACAAAATCACAATCTT+TGG + chr5_2:29585527-29585546 None:intergenic 25.0%
!!! TATTAAGCTTTTGGAATAGA+TGG - chr5_2:29585757-29585776 Msa0767060:intron 25.0%
!!! TCAACTTTTATTTCAAGTCA+CGG + chr5_2:29585851-29585870 None:intergenic 25.0%
! CGATTAAAAAAGAAACTGAT+CGG + chr5_2:29586420-29586439 None:intergenic 25.0%
! CAGAATTATATAATTTCCCT+TGG + chr5_2:29587080-29587099 None:intergenic 25.0%
!! CTAAGATGAGAAATATGTTT+TGG - chr5_2:29587131-29587150 Msa0767060:intron 25.0%
!! TATTGGAGTCTTCATAATTT+TGG - chr5_2:29587163-29587182 Msa0767060:intron 25.0%
! AACTAATGTTTATGATCCTT+CGG - chr5_2:29587543-29587562 Msa0767060:five_prime_UTR 25.0%
GAATAAATCCTTCTCTTCTA+TGG + chr5_2:29582287-29582306 None:intergenic 30.0%
TGTATCAAAACCCTAAATTG+GGG - chr5_2:29582509-29582528 Msa0767060:CDS 30.0%
CTAAAATAAGCCAATCCAAA+CGG + chr5_2:29582555-29582574 None:intergenic 30.0%
CTCCTAATTCAATAGACTAA+GGG + chr5_2:29582758-29582777 None:intergenic 30.0%
ACTCCTAATTCAATAGACTA+AGG + chr5_2:29582759-29582778 None:intergenic 30.0%
TTAGTCTATTGAATTAGGAG+TGG - chr5_2:29582758-29582777 Msa0767060:intron 30.0%
TTAGGAGTGGAAACAAAATT+TGG - chr5_2:29582771-29582790 Msa0767060:intron 30.0%
TTAATCGCGACAAAAACTAA+TGG - chr5_2:29582821-29582840 Msa0767060:intron 30.0%
! AGTCGTTGACATTTTCAAAT+TGG - chr5_2:29582850-29582869 Msa0767060:intron 30.0%
! TTTTTGTGAAGGACTGAATT+TGG - chr5_2:29582928-29582947 Msa0767060:intron 30.0%
!! AAGTTGAAGCTTTGTTTATC+AGG - chr5_2:29583005-29583024 Msa0767060:intron 30.0%
AAGCTCTCATGAAAAGTTTA+TGG + chr5_2:29583286-29583305 None:intergenic 30.0%
! TGATAGATTTAGGGTATGTT+TGG - chr5_2:29583460-29583479 Msa0767060:CDS 30.0%
TAAACACTTGTCAGATTGTT+TGG - chr5_2:29583673-29583692 Msa0767060:intron 30.0%
AAACACTTGTCAGATTGTTT+GGG - chr5_2:29583674-29583693 Msa0767060:intron 30.0%
AACTTAACAGTCTCAACTAA+AGG + chr5_2:29583915-29583934 None:intergenic 30.0%
TTTAGTTGAGACTGTTAAGT+TGG - chr5_2:29583914-29583933 Msa0767060:intron 30.0%
!! TTGTCGTGTTTGTGTTTTTA+TGG - chr5_2:29584147-29584166 Msa0767060:intron 30.0%
! CAGTAAACCTTTAAGAACTA+TGG + chr5_2:29584236-29584255 None:intergenic 30.0%
! TAGCTAGTTTAGTTAGTTGA+GGG + chr5_2:29584556-29584575 None:intergenic 30.0%
! TTAGCTAGTTTAGTTAGTTG+AGG + chr5_2:29584557-29584576 None:intergenic 30.0%
AGTTAGTTGGGATTGTTATA+GGG + chr5_2:29584583-29584602 None:intergenic 30.0%
TAGTTAGTTGGGATTGTTAT+AGG + chr5_2:29584584-29584603 None:intergenic 30.0%
ACTGTTAGGATATAGAAAAG+TGG + chr5_2:29584678-29584697 None:intergenic 30.0%
TGAATCTTTCTATCTTCAGA+TGG + chr5_2:29584791-29584810 None:intergenic 30.0%
AAGAATAAGAACGTTCAAGA+TGG + chr5_2:29584818-29584837 None:intergenic 30.0%
AAACTGTAATATGATCAGGT+TGG - chr5_2:29585096-29585115 Msa0767060:intron 30.0%
!! TGTGAACTTTTGATTGAAGA+AGG - chr5_2:29585165-29585184 Msa0767060:intron 30.0%
!! CGTGATTTGTTATAACAAAG+AGG - chr5_2:29585239-29585258 Msa0767060:intron 30.0%
! AACCATTGATTGACCATTAA+CGG - chr5_2:29585334-29585353 Msa0767060:intron 30.0%
!! GCAGTTGATTTTTCAATCAA+TGG - chr5_2:29585417-29585436 Msa0767060:intron 30.0%
!! AACTTTTATTTCAAGTCACG+GGG + chr5_2:29585849-29585868 None:intergenic 30.0%
!! CAACTTTTATTTCAAGTCAC+GGG + chr5_2:29585850-29585869 None:intergenic 30.0%
!!! CTTTTCAGGTATATGGTTTA+TGG - chr5_2:29585985-29586004 Msa0767060:intron 30.0%
GTCAAAAAGTTTAAGCAAAC+AGG - chr5_2:29586083-29586102 Msa0767060:intron 30.0%
ATTGGTGCAAAACTACATTT+GGG + chr5_2:29586169-29586188 None:intergenic 30.0%
AATTGGTGCAAAACTACATT+TGG + chr5_2:29586170-29586189 None:intergenic 30.0%
! ATTTTGTTCCAAATGCAATC+TGG - chr5_2:29586503-29586522 Msa0767060:intron 30.0%
AGCTTAGTATGCTTAACTTT+GGG - chr5_2:29586587-29586606 Msa0767060:intron 30.0%
!! TTCCATTTTTAATGAGGGTA+AGG - chr5_2:29586696-29586715 Msa0767060:CDS 30.0%
!! TCCATTTTTAATGAGGGTAA+GGG - chr5_2:29586697-29586716 Msa0767060:CDS 30.0%
ATCCATTCTTTAGGTATACA+AGG + chr5_2:29586810-29586829 None:intergenic 30.0%
ATACTGTCAATCCATTCTTT+AGG + chr5_2:29586819-29586838 None:intergenic 30.0%
AACTTGTAAGACGTTATAGA+AGG - chr5_2:29586949-29586968 Msa0767060:intron 30.0%
CTGAATACTAAACAGTATGA+TGG + chr5_2:29587007-29587026 None:intergenic 30.0%
!!! TGTTTTGGTAGTTCTGTTAT+TGG - chr5_2:29587146-29587165 Msa0767060:intron 30.0%
! CTATTATGTGTTTGGTTTAC+AGG - chr5_2:29587217-29587236 Msa0767060:intron 30.0%
AATGGTCATACACATAAAAC+AGG + chr5_2:29587417-29587436 None:intergenic 30.0%
AAAAAAGAGACAGATATGCA+AGG + chr5_2:29587475-29587494 None:intergenic 30.0%
ACAAGAAACCATAGAAGAGA+AGG - chr5_2:29582276-29582295 Msa0767060:three_prime_UTR 35.0%
TTATTCAAAGCAGCAGAAGA+AGG - chr5_2:29582301-29582320 Msa0767060:three_prime_UTR 35.0%
!! GTTTCTTAGAGAAAGTGCTT+TGG + chr5_2:29582368-29582387 None:intergenic 35.0%
! AGGTACTCTTTTCCTCAAAA+GGG - chr5_2:29582437-29582456 Msa0767060:CDS 35.0%
! AAAAGAAAGAGACCCTTTTG+AGG + chr5_2:29582452-29582471 None:intergenic 35.0%
TGCCCTTAGTCTATTGAATT+AGG - chr5_2:29582753-29582772 Msa0767060:intron 35.0%
! GGTCTTTGACAATTTTCTCA+CGG - chr5_2:29582792-29582811 Msa0767060:intron 35.0%
ATAATGAGTCGGGACTAATT+TGG - chr5_2:29582898-29582917 Msa0767060:intron 35.0%
TAATGAGTCGGGACTAATTT+GGG - chr5_2:29582899-29582918 Msa0767060:intron 35.0%
!! TTGAAGCTTTGTTTATCAGG+TGG - chr5_2:29583008-29583027 Msa0767060:intron 35.0%
! ATAGTGGTGATGAAGAAAGT+TGG - chr5_2:29583073-29583092 Msa0767060:intron 35.0%
! TAGTGGTGATGAAGAAAGTT+GGG - chr5_2:29583074-29583093 Msa0767060:intron 35.0%
GGTATGTTTGGATTGATTGA+GGG - chr5_2:29583472-29583491 Msa0767060:CDS 35.0%
!!! GATTGATTGAGGGTTTTGAA+GGG - chr5_2:29583482-29583501 Msa0767060:CDS 35.0%
!!! ATTGATTGAGGGTTTTGAAG+GGG - chr5_2:29583483-29583502 Msa0767060:CDS 35.0%
TAAAGATCTGTTTGGGAGTA+GGG + chr5_2:29583607-29583626 None:intergenic 35.0%
TACTCCCAAACAGATCTTTA+GGG - chr5_2:29583607-29583626 Msa0767060:intron 35.0%
ATAGCTTATGGACATGTCAT+CGG + chr5_2:29583717-29583736 None:intergenic 35.0%
TAATTGTACTGTGAGCTAAG+TGG - chr5_2:29583877-29583896 Msa0767060:intron 35.0%
GGTTTAGTTAACTTAAGCGT+TGG - chr5_2:29583935-29583954 Msa0767060:intron 35.0%
CTGCATTCAATCAAGTTACA+CGG + chr5_2:29584205-29584224 None:intergenic 35.0%
CTAGTACCCATAGTTCTTAA+AGG - chr5_2:29584226-29584245 Msa0767060:intron 35.0%
ATTTGTAATTGTTAGGACCC+AGG - chr5_2:29584319-29584338 Msa0767060:intron 35.0%
TTTGTAATTGTTAGGACCCA+GGG - chr5_2:29584320-29584339 Msa0767060:intron 35.0%
AGTAGTAACTCTACTGTGAA+GGG + chr5_2:29584450-29584469 None:intergenic 35.0%
!! TTAGTTAGTTGAGGGTGTTA+TGG + chr5_2:29584548-29584567 None:intergenic 35.0%
TCTTTCTATCTTCAGATGGA+AGG + chr5_2:29584787-29584806 None:intergenic 35.0%
TATTTAGTTGCACAGTGCTA+AGG - chr5_2:29585497-29585516 Msa0767060:intron 35.0%
ATTTAGTTGCACAGTGCTAA+GGG - chr5_2:29585498-29585517 Msa0767060:intron 35.0%
!!! TTTGTTTTAGTCACTTGCAC+TGG - chr5_2:29585561-29585580 Msa0767060:intron 35.0%
GTTGAAAACAAAACCTCTCA+TGG - chr5_2:29585627-29585646 Msa0767060:intron 35.0%
GTGGAATTATAAACCATGAG+AGG + chr5_2:29585643-29585662 None:intergenic 35.0%
TTAGATCCTTTATGACCAAG+TGG - chr5_2:29585794-29585813 Msa0767060:intron 35.0%
GCTAGGTAAAGACATATGTA+TGG + chr5_2:29585960-29585979 None:intergenic 35.0%
! TTACCTAGCTAAAGCTTTTC+AGG - chr5_2:29585971-29585990 Msa0767060:intron 35.0%
! ATACCTGAAAAGCTTTAGCT+AGG + chr5_2:29585977-29585996 None:intergenic 35.0%
!!! GCTAAAGCTTTTCAGGTATA+TGG - chr5_2:29585978-29585997 Msa0767060:intron 35.0%
GATATTACAGAGGGATGAAA+TGG + chr5_2:29586133-29586152 None:intergenic 35.0%
CTGAAAGAGGATATTACAGA+GGG + chr5_2:29586142-29586161 None:intergenic 35.0%
ACTGAAAGAGGATATTACAG+AGG + chr5_2:29586143-29586162 None:intergenic 35.0%
! ACCAATTTTTCCATCGTTGT+TGG - chr5_2:29586183-29586202 Msa0767060:intron 35.0%
! CCAATTTTTCCATCGTTGTT+GGG - chr5_2:29586184-29586203 Msa0767060:intron 35.0%
! CAATTTTTCCATCGTTGTTG+GGG - chr5_2:29586185-29586204 Msa0767060:intron 35.0%
! AATTTTTCCATCGTTGTTGG+GGG - chr5_2:29586186-29586205 Msa0767060:intron 35.0%
GTTAAACACAAGAAATCCCT+CGG - chr5_2:29586377-29586396 Msa0767060:intron 35.0%
! CATAATTTTACATGGGAGAC+TGG + chr5_2:29586534-29586553 None:intergenic 35.0%
CAGCTTAGTATGCTTAACTT+TGG - chr5_2:29586586-29586605 Msa0767060:intron 35.0%
ACCCTTACCCTCATTAAAAA+TGG + chr5_2:29586701-29586720 None:intergenic 35.0%
! TTTTTAATGAGGGTAAGGGT+AGG - chr5_2:29586701-29586720 Msa0767060:CDS 35.0%
TAAGTGATGAGATGATGTGT+TGG + chr5_2:29586746-29586765 None:intergenic 35.0%
CTCCTTGTATACCTAAAGAA+TGG - chr5_2:29586805-29586824 Msa0767060:intron 35.0%
AATAGAAGAAAGCAGTAAGC+TGG + chr5_2:29586895-29586914 None:intergenic 35.0%
TAGAAGGTTGAAAATGCAGT+TGG - chr5_2:29586965-29586984 Msa0767060:intron 35.0%
!!! AACTTTTAGTTTCAACACCG+AGG - chr5_2:29587046-29587065 Msa0767060:intron 35.0%
! AATATTGATTGATGCTGCCA+AGG - chr5_2:29587337-29587356 Msa0767060:intron 35.0%
GTGTTTGTATCATTCAAGCA+TGG + chr5_2:29587363-29587382 None:intergenic 35.0%
GATACAAACACAAGAGAATG+AGG - chr5_2:29587372-29587391 Msa0767060:CDS 35.0%
!!! TGAGGAACAAGGTTTTGTTT+AGG - chr5_2:29587390-29587409 Msa0767060:CDS 35.0%
GCATTCTTAACCAGTATTTG+AGG - chr5_2:29587500-29587519 Msa0767060:CDS 35.0%
GTGACAATAACCTCAAATAC+TGG + chr5_2:29587513-29587532 None:intergenic 35.0%
TTCAGAGGACAATGATTCGA+AGG + chr5_2:29582338-29582357 None:intergenic 40.0%
! CAGGTACTCTTTTCCTCAAA+AGG - chr5_2:29582436-29582455 Msa0767060:CDS 40.0%
GGAAGTAGAACCCCAATTTA+GGG + chr5_2:29582522-29582541 None:intergenic 40.0%
AGGAAGTAGAACCCCAATTT+AGG + chr5_2:29582523-29582542 None:intergenic 40.0%
GGGTTCTACTTCCTAGTTAA+GGG - chr5_2:29582529-29582548 Msa0767060:intron 40.0%
! CAATAGACTAAGGGCATGTT+TGG + chr5_2:29582749-29582768 None:intergenic 40.0%
ATTTGGCCGAGAAAATTGTG+AGG - chr5_2:29582945-29582964 Msa0767060:intron 40.0%
TTTGGCCGAGAAAATTGTGA+GGG - chr5_2:29582946-29582965 Msa0767060:intron 40.0%
! TTGGTCCCTCACAATTTTCT+CGG + chr5_2:29582954-29582973 None:intergenic 40.0%
TCTGCTGAGGTGATAAATAG+TGG - chr5_2:29583057-29583076 Msa0767060:intron 40.0%
TGAACACTTGTGAGACTGTT+TGG - chr5_2:29583241-29583260 Msa0767060:CDS 40.0%
GAACACTTGTGAGACTGTTT+GGG - chr5_2:29583242-29583261 Msa0767060:CDS 40.0%
GGGTATGTTTGGATTGATTG+AGG - chr5_2:29583471-29583490 Msa0767060:CDS 40.0%
!! GGATTGATTGAGGGTTTTGA+AGG - chr5_2:29583481-29583500 Msa0767060:CDS 40.0%
CTAAAGATCTGTTTGGGAGT+AGG + chr5_2:29583608-29583627 None:intergenic 40.0%
CTACTCCCAAACAGATCTTT+AGG - chr5_2:29583606-29583625 Msa0767060:intron 40.0%
CAGACCCTAAAGATCTGTTT+GGG + chr5_2:29583614-29583633 None:intergenic 40.0%
ACAGACCCTAAAGATCTGTT+TGG + chr5_2:29583615-29583634 None:intergenic 40.0%
!! ACAGATCTTTAGGGTCTGTT+TGG - chr5_2:29583616-29583635 Msa0767060:intron 40.0%
AGAAGATGCTGCTAGACATT+AGG + chr5_2:29583842-29583861 None:intergenic 40.0%
GACAATGCAACACAGAAACA+TGG + chr5_2:29584126-29584145 None:intergenic 40.0%
GAGAGAGAGAGAGTAAGAAT+AGG - chr5_2:29584398-29584417 Msa0767060:intron 40.0%
GAAAGAAATCTCTCCTCCAA+GGG - chr5_2:29584420-29584439 Msa0767060:intron 40.0%
GTAGTAACTCTACTGTGAAG+GGG + chr5_2:29584449-29584468 None:intergenic 40.0%
GAGTAGTAACTCTACTGTGA+AGG + chr5_2:29584451-29584470 None:intergenic 40.0%
TCTTCAGATGGAAGGATTGA+CGG + chr5_2:29584779-29584798 None:intergenic 40.0%
TTAAGGACAAGGTTGTAGCT+TGG - chr5_2:29584964-29584983 Msa0767060:intron 40.0%
TGCCGTTAATGGTCAATCAA+TGG + chr5_2:29585339-29585358 None:intergenic 40.0%
ATTGATTGACCATTAACGGC+AGG - chr5_2:29585338-29585357 Msa0767060:intron 40.0%
TTGATTGACCATTAACGGCA+GGG - chr5_2:29585339-29585358 Msa0767060:intron 40.0%
GCATTTCGTTTATAGCAAGG+TGG + chr5_2:29585662-29585681 None:intergenic 40.0%
TCGGCATTTCGTTTATAGCA+AGG + chr5_2:29585665-29585684 None:intergenic 40.0%
TCAAGACCACTTGGTCATAA+AGG + chr5_2:29585803-29585822 None:intergenic 40.0%
GTATTGAACTCAAGACCACT+TGG + chr5_2:29585812-29585831 None:intergenic 40.0%
AAGTTGAATTTCAGCGCACA+TGG - chr5_2:29585864-29585883 Msa0767060:intron 40.0%
AGACGTTGTGGTTGTGTAAA+TGG + chr5_2:29586062-29586081 None:intergenic 40.0%
! AACTTTTTGACGAGACGTTG+TGG + chr5_2:29586074-29586093 None:intergenic 40.0%
CTCTTAGAACTTAGAAGCCT+TGG - chr5_2:29586106-29586125 Msa0767060:intron 40.0%
! ACATTTGGGACTACTGAAAG+AGG + chr5_2:29586155-29586174 None:intergenic 40.0%
CCCAACAACGATGGAAAAAT+TGG + chr5_2:29586187-29586206 None:intergenic 40.0%
ATTACGGAATTGCAGAGTGA+CGG - chr5_2:29586268-29586287 Msa0767060:intron 40.0%
ACTAACGATTTGACCATGAG+TGG + chr5_2:29586341-29586360 None:intergenic 40.0%
! GTTAGTTTGAGTCAGCAATC+AGG - chr5_2:29586355-29586374 Msa0767060:intron 40.0%
GAAACTGATCGGTTAGAACA+CGG + chr5_2:29586409-29586428 None:intergenic 40.0%
GCATACTAAGCTGTTACAGA+TGG + chr5_2:29586579-29586598 None:intergenic 40.0%
! AGTAAGCTGGAGTCTTGTAA+AGG + chr5_2:29586882-29586901 None:intergenic 40.0%
AGGTAGCACTCCTTCTTATA+AGG - chr5_2:29587237-29587256 Msa0767060:intron 40.0%
ACACAAGAGAATGAGGAACA+AGG - chr5_2:29587379-29587398 Msa0767060:CDS 40.0%
!! TGACCATTGAGAGCATTCAA+TGG - chr5_2:29587429-29587448 Msa0767060:CDS 40.0%
AAGCCATTGAATGCTCTCAA+TGG + chr5_2:29587435-29587454 None:intergenic 40.0%
AAGAGACAGATATGCAAGGT+TGG + chr5_2:29587471-29587490 None:intergenic 40.0%
!! TGCTTTGGAGAGTGATTCAG+AGG + chr5_2:29582353-29582372 None:intergenic 45.0%
!! CTTCATGTTGCCGCTTCTTT+TGG - chr5_2:29582406-29582425 Msa0767060:exon 45.0%
CTGAGAGTGACCAAAAGAAG+CGG + chr5_2:29582419-29582438 None:intergenic 45.0%
GGGGTTCTACTTCCTAGTTA+AGG - chr5_2:29582528-29582547 Msa0767060:CDS 45.0%
AATCCAAACGGCCCTTAACT+AGG + chr5_2:29582543-29582562 None:intergenic 45.0%
TAGTTAAGGGCCGTTTGGAT+TGG - chr5_2:29582542-29582561 Msa0767060:intron 45.0%
ATGCTGGCAGCAGAATGAAT+CGG + chr5_2:29583102-29583121 None:intergenic 45.0%
ATTCATTCTGCTGCCAGCAT+TGG - chr5_2:29583102-29583121 Msa0767060:intron 45.0%
TTCATTCTGCTGCCAGCATT+GGG - chr5_2:29583103-29583122 Msa0767060:intron 45.0%
AATCTCCGAATTCCCAATGC+TGG + chr5_2:29583118-29583137 None:intergenic 45.0%
CATTGGGAATTCGGAGATTC+TGG - chr5_2:29583119-29583138 Msa0767060:intron 45.0%
!! CTGGAGGCTTTGTTGAACAA+AGG - chr5_2:29583138-29583157 Msa0767060:intron 45.0%
!!! ATTGAGGGTTTTGAAGGGGA+GGG - chr5_2:29583487-29583506 Msa0767060:CDS 45.0%
TTTGGGAGTAGGGTTATGGA+GGG + chr5_2:29583597-29583616 None:intergenic 45.0%
TCTGTTTGGGAGTAGGGTTA+TGG + chr5_2:29583601-29583620 None:intergenic 45.0%
CTATGTGTTTGTGTCGTGTC+AGG + chr5_2:29584297-29584316 None:intergenic 45.0%
GGAAAGAAATCTCTCCTCCA+AGG - chr5_2:29584419-29584438 Msa0767060:intron 45.0%
! TTTGCTGGCTGCATAGTGTA+AGG + chr5_2:29584892-29584911 None:intergenic 45.0%
TTACACTATGCAGCCAGCAA+AGG - chr5_2:29584891-29584910 Msa0767060:CDS 45.0%
AATCTTCATCCGACCTTTGC+TGG + chr5_2:29584907-29584926 None:intergenic 45.0%
! GTTGATGCTGTTGATAGAGC+TGG - chr5_2:29585195-29585214 Msa0767060:intron 45.0%
CAAATCACGGCACTCATTAG+AGG + chr5_2:29585228-29585247 None:intergenic 45.0%
ATCACAATCCCTGCCGTTAA+TGG + chr5_2:29585350-29585369 None:intergenic 45.0%
AACCTTCACTTTCCCCTCAA+AGG - chr5_2:29585445-29585464 Msa0767060:intron 45.0%
AATGAGCAGTACGCCTTTGA+GGG + chr5_2:29585461-29585480 None:intergenic 45.0%
AAATGAGCAGTACGCCTTTG+AGG + chr5_2:29585462-29585481 None:intergenic 45.0%
GGAATAGATGGTTCGTGACA+TGG - chr5_2:29585769-29585788 Msa0767060:intron 45.0%
TGCGTTTGTGCTCTATGCTT+CGG - chr5_2:29585892-29585911 Msa0767060:intron 45.0%
!! GCCACTTTGGCTTGCAATTA+CGG - chr5_2:29586252-29586271 Msa0767060:intron 45.0%
TCCGTAATTGCAAGCCAAAG+TGG + chr5_2:29586256-29586275 None:intergenic 45.0%
CTCAGTGTTTGCCTAAGATG+TGG - chr5_2:29586469-29586488 Msa0767060:intron 45.0%
TCGAGTGCATACCACATCTT+AGG + chr5_2:29586483-29586502 None:intergenic 45.0%
! ATTTTACATGGGAGACTGGC+CGG + chr5_2:29586530-29586549 None:intergenic 45.0%
TTAGGTATACAAGGAGAGCG+AGG + chr5_2:29586801-29586820 None:intergenic 45.0%
GCACTCCTTCTTATAAGGCA+TGG - chr5_2:29587242-29587261 Msa0767060:intron 45.0%
CTGCTCCATGCCTTATAAGA+AGG + chr5_2:29587250-29587269 None:intergenic 45.0%
TATAAGGCATGGAGCAGATG+TGG - chr5_2:29587253-29587272 Msa0767060:intron 45.0%
GTATCATTCAAGCATGGCCT+TGG + chr5_2:29587357-29587376 None:intergenic 45.0%
! GACAGATATGCAAGGTTGGT+AGG + chr5_2:29587467-29587486 None:intergenic 45.0%
!!! TATTATTTATAAATTTGTTA+AGG - chr5_2:29582603-29582622 Msa0767060:intron 5.0%
! CGCTTCTTTTGGTCACTCTC+AGG - chr5_2:29582417-29582436 Msa0767060:CDS 50.0%
CTTCCTAGTTAAGGGCCGTT+TGG - chr5_2:29582537-29582556 Msa0767060:intron 50.0%
! TGCTGCCAGCATTGGGAATT+CGG - chr5_2:29583110-29583129 Msa0767060:intron 50.0%
TGGGAATTCGGAGATTCTGG+AGG - chr5_2:29583122-29583141 Msa0767060:intron 50.0%
CTTGTGAGACTGTTTGGGAG+AGG - chr5_2:29583247-29583266 Msa0767060:CDS 50.0%
!!! GATTGAGGGTTTTGAAGGGG+AGG - chr5_2:29583486-29583505 Msa0767060:CDS 50.0%
GTTTGGGAGTAGGGTTATGG+AGG + chr5_2:29583598-29583617 None:intergenic 50.0%
! GTCAGGTGTGTGTGGGTTAT+TGG + chr5_2:29584280-29584299 None:intergenic 50.0%
TACTGTGAAGGGGAAACCCT+TGG + chr5_2:29584439-29584458 None:intergenic 50.0%
CACAAGTGTCAGTGTCGTGT+CGG - chr5_2:29584733-29584752 Msa0767060:intron 50.0%
ACTATGCAGCCAGCAAAGGT+CGG - chr5_2:29584895-29584914 Msa0767060:CDS 50.0%
ATGAGCAGTACGCCTTTGAG+GGG + chr5_2:29585460-29585479 None:intergenic 50.0%
GCATAGAGCACAAACGCACT+CGG + chr5_2:29585890-29585909 None:intergenic 50.0%
GCGTTTGTGCTCTATGCTTC+GGG - chr5_2:29585893-29585912 Msa0767060:intron 50.0%
CAGAGGGATGAAATGGTCCA+AGG + chr5_2:29586126-29586145 None:intergenic 50.0%
AGTGGCGTGATCGACAACAT+GGG + chr5_2:29586238-29586257 None:intergenic 50.0%
AAGTGGCGTGATCGACAACA+TGG + chr5_2:29586239-29586258 None:intergenic 50.0%
TGTTGTCGATCACGCCACTT+TGG - chr5_2:29586239-29586258 Msa0767060:intron 50.0%
TAGAACACGGAGGTTTCCGA+GGG + chr5_2:29586396-29586415 None:intergenic 50.0%
TTAGAACACGGAGGTTTCCG+AGG + chr5_2:29586397-29586416 None:intergenic 50.0%
ACTGATCGGTTAGAACACGG+AGG + chr5_2:29586406-29586425 None:intergenic 50.0%
GTTCCAAATGCAATCTGGCC+CGG - chr5_2:29586508-29586527 Msa0767060:intron 50.0%
!! TTTTACATGGGAGACTGGCC+GGG + chr5_2:29586529-29586548 None:intergenic 50.0%
AGTTTCAACACCGAGGTGCA+AGG - chr5_2:29587053-29587072 Msa0767060:intron 50.0%
GTTTCAACACCGAGGTGCAA+GGG - chr5_2:29587054-29587073 Msa0767060:intron 50.0%
AGATGTGGATGTGGAGGACA+AGG - chr5_2:29587268-29587287 Msa0767060:intron 50.0%
TGGATGTGGAGGACAAGGAA+GGG - chr5_2:29587273-29587292 Msa0767060:intron 50.0%
GTCCTGTGATGCATCTGCTG+AGG - chr5_2:29583044-29583063 Msa0767060:intron 55.0%
CACCTCAGCAGATGCATCAC+AGG + chr5_2:29583049-29583068 None:intergenic 55.0%
GTGTCGTGTCAGGTGTGTGT+GGG + chr5_2:29584287-29584306 None:intergenic 55.0%
TGTGTCGTGTCAGGTGTGTG+TGG + chr5_2:29584288-29584307 None:intergenic 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr5_2:29584436-29584455 None:intergenic 55.0%
! TGTCAGTGTCGTGTCGGTGT+TGG - chr5_2:29584739-29584758 Msa0767060:intron 55.0%
TTGGTTCCACCCCGTTGCAT+CGG - chr5_2:29585115-29585134 Msa0767060:intron 55.0%
! CGCCTTTGAGGGGAAAGTGA+AGG + chr5_2:29585450-29585469 None:intergenic 55.0%
! TTTCAAGTCACGGGGCAGCA+AGG + chr5_2:29585841-29585860 None:intergenic 55.0%
CTCTATGCTTCGGGTGTGTG+TGG - chr5_2:29585902-29585921 Msa0767060:intron 55.0%
GCATGGAGCAGATGTGGATG+TGG - chr5_2:29587259-29587278 Msa0767060:intron 55.0%
TGGAGCAGATGTGGATGTGG+AGG - chr5_2:29587262-29587281 Msa0767060:intron 55.0%
GTGGATGTGGAGGACAAGGA+AGG - chr5_2:29587272-29587291 Msa0767060:intron 55.0%
! GGAGGACAAGGAAGGGTACA+CGG - chr5_2:29587280-29587299 Msa0767060:intron 55.0%
! AAGGAAGGGTACACGGTGCT+TGG - chr5_2:29587287-29587306 Msa0767060:intron 55.0%
TGGTTCCACCCCGTTGCATC+GGG - chr5_2:29585116-29585135 Msa0767060:intron 60.0%
TGCTAGCTGCCCGATGCAAC+GGG + chr5_2:29585128-29585147 None:intergenic 60.0%
GTGCTAGCTGCCCGATGCAA+CGG + chr5_2:29585129-29585148 None:intergenic 60.0%
TTGCATCGGGCAGCTAGCAC+TGG - chr5_2:29585129-29585148 Msa0767060:intron 60.0%
TGCATCGGGCAGCTAGCACT+GGG - chr5_2:29585130-29585149 Msa0767060:intron 60.0%
TCAGCCGATGAGCCGCATTC+AGG - chr5_2:29586308-29586327 Msa0767060:intron 60.0%
GCCTCCTGAATGCGGCTCAT+CGG + chr5_2:29586315-29586334 None:intergenic 60.0%
AGTGGCACGCCTCCTGAATG+CGG + chr5_2:29586323-29586342 None:intergenic 60.0%
! TTCAGGAGGCGTGCCACTCA+TGG - chr5_2:29586325-29586344 Msa0767060:intron 60.0%
TGGCCGGGCCAGATTGCATT+TGG + chr5_2:29586514-29586533 None:intergenic 60.0%
TTCCCTTGGCCCTTGCACCT+CGG + chr5_2:29587066-29587085 None:intergenic 60.0%
GCTAGCTGCCCGATGCAACG+GGG + chr5_2:29585127-29585146 None:intergenic 65.0%
GCCGATGAGCCGCATTCAGG+AGG - chr5_2:29586311-29586330 Msa0767060:intron 65.0%
ACACCGAGGTGCAAGGGCCA+AGG - chr5_2:29587060-29587079 Msa0767060:intron 65.0%
CACCGAGGTGCAAGGGCCAA+GGG - chr5_2:29587061-29587080 Msa0767060:intron 65.0%
AGCTGCCCGATGCAACGGGG+TGG + chr5_2:29585124-29585143 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29582214 29587572 29582214 ID=Msa0767060;Name=Msa0767060
chr5_2 mRNA 29582214 29587572 29582214 ID=Msa0767060-mRNA-1;Parent=Msa0767060;Name=Msa0767060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=33|0.5|0.71|0.71|1|1|7|199|326
chr5_2 exon 29582214 29582547 29582214 ID=Msa0767060-mRNA-1:exon:11288;Parent=Msa0767060-mRNA-1
chr5_2 exon 29583205 29583318 29583205 ID=Msa0767060-mRNA-1:exon:11287;Parent=Msa0767060-mRNA-1
chr5_2 exon 29583440 29583574 29583440 ID=Msa0767060-mRNA-1:exon:11286;Parent=Msa0767060-mRNA-1
chr5_2 exon 29584526 29584672 29584526 ID=Msa0767060-mRNA-1:exon:11285;Parent=Msa0767060-mRNA-1
chr5_2 exon 29584812 29584936 29584812 ID=Msa0767060-mRNA-1:exon:11284;Parent=Msa0767060-mRNA-1
chr5_2 exon 29586627 29586759 29586627 ID=Msa0767060-mRNA-1:exon:11283;Parent=Msa0767060-mRNA-1
chr5_2 exon 29587348 29587572 29587348 ID=Msa0767060-mRNA-1:exon:11282;Parent=Msa0767060-mRNA-1
chr5_2 five_prime_UTR 29587540 29587572 29587540 ID=Msa0767060-mRNA-1:five_prime_utr;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29587348 29587539 29587348 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29586627 29586759 29586627 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29584812 29584936 29584812 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29584526 29584672 29584526 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29583440 29583574 29583440 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29583205 29583318 29583205 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 CDS 29582413 29582547 29582413 ID=Msa0767060-mRNA-1:cds;Parent=Msa0767060-mRNA-1
chr5_2 three_prime_UTR 29582214 29582412 29582214 ID=Msa0767060-mRNA-1:three_prime_utr;Parent=Msa0767060-mRNA-1
Gene Sequence

>Msa0767060

ATGAACATGGAAGTAGACACTGAGAACAAACAAGAAACCATAGAAGAGAAGGATTTATTCAAAGCAGCAGAAGAAGGAGATTCTTCAACCTTCGAATCATTGTCCTCTGAATCACTCTCCAAAGCACTTTCTCTAAGAAACGAAGACGATCGTTCTCTTCTTCATGTTGCCGCTTCTTTTGGTCACTCTCAGGTGGTGAAGATATTGTTGTCCTGTGATGCATCTGCTGAGGTGATAAATAGTGGTGATGAAGAAAGTTGGGCACCGATTCATTCTGCTGCCAGCATTGGGAATTCGGAGATTCTGGAGGCTTTGTTGAACAAAGGAGCTGATGTTAATATTAAAAACAATGGGGGACGCACTGCCTTACACTATGCAGCCAGCAAAGGTCGGATGAAGATTGCTGAAATACTCATCTCCCATAATGCCAACATTAATATTAAGGACAAGGTTGGTTCCACCCCGTTGCATCGGGCAGCTAGCACTGGGAATTCTGAGTTGTGTGAACTTTTGATTGAAGAAGGAGCTGATGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAGTGCCGTGATTTGTTATAACAAAGAGACCTACTCATCAGTCAAGGTGCGCCCATGTTGTCGATCACGCCACTTTGGCTTGCAATTACGGAATTGCAGAGTGACGGCATCTTCTGCGACGAGTTCAGCCGATGAGCCGCATTCAGGAGGCGTGCCACTCATGTCTCAGTGTTTGCCTAAGATGTGGTATGCACTCGAATTTTGTTCCAAATGCAATCTGGCCCGGCCAGTCTCCCATGTAAAATTATGTTCTTTTTCTCTTGCAACTGTTCCATCTGTAGCACTCCTTCTTATAAGGCATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACGGTGCTTGGTCGAATTACTGACGATGAGTTTAGATCAATATTGATTGATGCTGCCAAGGCCATGCTTGAATGA
Protein sequence

>Msa0767060

MNMEVDTENKQETIEEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASFGHSQVVKILLSCDASAEVINSGDEESWAPIHSAASIGNSEILEALLNKGADVNIKNNGGRTALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRAASTGNSELCELLIEEGADVDAVDRAGQTPLMSAVICYNKETYSSVKVRPCCRSRHFGLQLRNCRVTASSATSSADEPHSGGVPLMSQCLPKMWYALEFCSKCNLARPVSHVKLCSFSLATVPSVALLLIRHGADVDVEDKEGYTVLGRITDDEFRSILIDAAKAMLE*