AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846830 MtrunA17_Chr5g0418551 95.500 200 9 0 1 200 5 204 1.63e-125 359
Msa0846830 MtrunA17_Chr5g0418551 36.429 140 84 2 19 158 94 228 2.30e-16 77.4
Msa0846830 MtrunA17_Chr7g0263471 33.690 187 119 4 9 192 117 301 8.05e-20 90.1
Msa0846830 MtrunA17_Chr5g0405451 28.235 170 86 3 85 218 268 437 3.70e-17 81.6
Msa0846830 MtrunA17_Chr2g0303671 35.659 129 80 3 75 202 170 296 3.44e-16 77.8
Msa0846830 MtrunA17_Chr1g0211241 33.121 157 96 4 47 199 199 350 7.09e-16 78.6
Msa0846830 MtrunA17_Chr1g0211241 29.193 161 106 3 33 192 123 276 1.11e-12 68.6
Msa0846830 MtrunA17_Chr1g0212971 32.447 188 120 5 9 192 125 309 8.13e-16 78.2
Msa0846830 MtrunA17_Chr1g0196261 30.539 167 92 2 47 192 250 413 9.44e-16 77.8
Msa0846830 MtrunA17_Chr1g0211231 35.099 151 92 3 45 192 58 205 1.68e-15 77.0
Msa0846830 MtrunA17_Chr7g0276681 37.143 140 81 5 54 189 154 290 2.82e-15 76.6
Msa0846830 MtrunA17_Chr7g0276681 35.088 171 102 6 37 205 171 334 3.68e-15 76.3
Msa0846830 MtrunA17_Chr3g0079591 38.889 126 70 1 71 189 202 327 3.27e-15 75.5
Msa0846830 MtrunA17_Chr3g0127131 34.821 112 70 1 90 201 241 349 3.31e-15 75.5
Msa0846830 MtrunA17_Chr3g0127131 41.860 86 50 0 69 154 253 338 1.29e-12 67.8
Msa0846830 MtrunA17_Chr5g0409271 34.559 136 87 1 54 189 15 148 2.08e-14 72.0
Msa0846830 MtrunA17_Chr5g0409271 34.899 149 91 4 9 156 5 148 1.01e-11 64.3
Msa0846830 MtrunA17_Chr5g0406201 30.303 165 111 2 43 206 294 455 3.37e-14 73.2
Msa0846830 MtrunA17_Chr6g0461061 29.891 184 110 4 6 189 303 467 3.92e-14 73.2
Msa0846830 MtrunA17_Chr6g0461061 30.061 163 91 2 48 189 274 434 8.43e-13 68.9
Msa0846830 MtrunA17_Chr6g0461061 31.008 129 89 0 65 193 156 284 3.33e-11 63.9
Msa0846830 MtrunA17_Chr4g0031491 33.163 196 103 6 15 189 12 200 4.40e-14 72.8
Msa0846830 MtrunA17_Chr4g0064931 35.461 141 85 3 51 188 104 241 6.60e-14 72.4
Msa0846830 MtrunA17_Chr4g0064931 28.671 143 99 2 51 192 37 177 9.63e-12 65.9
Msa0846830 MtrunA17_Chr8g0361891 29.146 199 115 4 22 194 139 337 8.74e-14 71.2
Msa0846830 MtrunA17_Chr5g0434371 36.036 111 66 1 61 171 632 737 1.73e-13 71.2
Msa0846830 MtrunA17_Chr5g0434371 33.553 152 96 2 47 198 585 731 1.51e-12 68.6
Msa0846830 MtrunA17_Chr4g0049351 33.333 117 75 2 79 192 116 232 3.17e-13 70.1
Msa0846830 MtrunA17_Chr4g0073161 33.333 153 76 6 54 192 122 262 6.87e-13 69.3
Msa0846830 MtrunA17_Chr1g0148981 31.579 152 100 2 37 184 559 710 7.30e-13 69.3
Msa0846830 MtrunA17_Chr1g0148981 29.577 142 94 3 47 187 642 778 5.35e-11 63.9
Msa0846830 MtrunA17_Chr5g0409081 37.000 100 57 2 83 176 26 125 2.13e-12 64.7
Msa0846830 MtrunA17_Chr2g0328031 30.319 188 111 5 19 189 15 199 3.34e-12 67.0
Msa0846830 MtrunA17_Chr5g0443471 38.554 83 51 0 94 176 58 140 3.48e-12 67.0
Msa0846830 MtrunA17_Chr3g0125011 40.000 90 54 0 104 193 38 127 4.34e-12 63.2
Msa0846830 MtrunA17_Chr3g0125011 30.882 136 87 3 1 136 8 136 6.15e-11 60.1
Msa0846830 MtrunA17_Chr1g0161231 32.258 186 109 6 16 192 57 234 5.13e-12 66.6
Msa0846830 MtrunA17_Chr7g0263421 31.694 183 120 4 10 189 44 224 6.24e-12 66.2
Msa0846830 MtrunA17_Chr8g0380551 39.583 96 55 1 97 192 117 209 6.48e-12 66.2
Msa0846830 MtrunA17_Chr7g0226271 29.609 179 113 5 19 192 447 617 6.88e-12 66.2
Msa0846830 MtrunA17_Chr7g0274241 32.278 158 103 4 37 193 41 195 1.23e-11 65.5
Msa0846830 MtrunA17_Chr2g0277651 30.070 143 98 1 34 176 486 626 2.70e-11 64.7
Msa0846830 MtrunA17_Chr3g0138141 38.542 96 57 1 89 182 102 197 3.06e-11 63.9
Msa0846830 MtrunA17_Chr4g0030551 29.944 177 113 5 1 175 131 298 5.31e-11 63.5
Msa0846830 MtrunA17_Chr2g0327711 31.579 171 103 6 37 199 53 217 8.79e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846830 AT2G03430.1 65.990 197 66 1 3 199 1 196 5.61e-90 269
Msa0846830 AT5G02620.4 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0846830 AT5G02620.4 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0846830 AT5G02620.1 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0846830 AT5G02620.1 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0846830 AT5G02620.3 33.831 201 127 5 16 213 57 254 1.34e-18 86.7
Msa0846830 AT5G02620.3 31.188 202 129 6 7 199 7 207 6.91e-14 72.8
Msa0846830 AT5G02620.5 34.807 181 113 4 16 193 57 235 2.36e-18 86.3
Msa0846830 AT5G02620.5 31.188 202 129 6 7 199 7 207 6.49e-14 72.8
Msa0846830 AT5G02620.2 34.807 181 113 4 16 193 57 235 2.36e-18 86.3
Msa0846830 AT5G02620.2 31.188 202 129 6 7 199 7 207 6.49e-14 72.8
Msa0846830 AT4G19150.1 33.333 147 93 2 54 200 20 161 4.37e-16 77.0
Msa0846830 AT4G19150.1 33.152 184 110 7 18 197 19 193 1.61e-13 69.7
Msa0846830 AT4G35450.5 41.000 100 59 0 90 189 230 329 2.19e-15 76.3
Msa0846830 AT4G35450.4 41.000 100 59 0 90 189 184 283 2.25e-15 75.9
Msa0846830 AT4G27780.1 38.000 100 62 0 90 189 237 336 2.61e-15 76.3
Msa0846830 AT4G27780.1 41.237 97 57 0 60 156 240 336 3.01e-13 70.1
Msa0846830 AT4G35450.2 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0846830 AT4G35450.3 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0846830 AT4G35450.1 41.000 100 59 0 90 189 222 321 2.96e-15 75.9
Msa0846830 AT1G07710.2 32.597 181 116 5 22 199 108 285 4.05e-15 76.3
Msa0846830 AT1G07710.1 32.597 181 116 5 22 199 108 285 4.05e-15 76.3
Msa0846830 AT3G02850.1 34.211 152 98 2 34 185 497 646 9.16e-15 75.5
Msa0846830 AT3G02850.1 36.842 152 91 2 47 198 578 724 1.09e-14 75.5
Msa0846830 AT3G02850.2 34.211 152 98 2 34 185 497 646 1.16e-14 75.1
Msa0846830 AT3G02850.2 36.842 152 91 2 47 198 578 724 1.46e-14 75.1
Msa0846830 AT5G53470.1 39.796 98 59 0 59 156 224 321 1.41e-14 73.9
Msa0846830 AT5G53470.1 38.000 100 62 0 90 189 222 321 2.30e-14 73.2
Msa0846830 AT5G20350.1 34.752 141 86 3 51 188 99 236 3.13e-14 73.9
Msa0846830 AT5G20350.1 29.012 162 104 4 35 192 18 172 1.32e-13 72.0
Msa0846830 AT2G17390.1 39.000 100 61 0 90 189 224 323 3.20e-14 72.8
Msa0846830 AT5G66055.1 34.862 109 71 0 85 193 259 367 5.22e-14 72.8
Msa0846830 AT5G66055.1 30.061 163 109 3 54 214 264 423 8.44e-13 69.3
Msa0846830 AT2G31820.1 32.051 156 99 5 54 205 262 414 6.18e-14 73.2
Msa0846830 AT2G31820.1 31.694 183 120 4 10 189 184 364 2.01e-13 71.6
Msa0846830 AT2G31820.1 36.154 130 79 3 49 176 291 418 5.37e-13 70.1
Msa0846830 AT5G37500.1 30.899 178 116 3 22 199 538 708 7.54e-14 72.8
Msa0846830 AT5G37500.1 33.113 151 96 2 34 182 480 627 6.35e-13 70.1
Msa0846830 AT3G12360.2 29.940 167 113 3 9 173 111 275 1.57e-13 71.6
Msa0846830 AT3G12360.1 29.940 167 113 3 9 173 123 287 1.65e-13 71.6
Msa0846830 AT5G60070.1 31.122 196 118 8 22 207 115 303 1.65e-13 71.6
Msa0846830 AT5G60070.1 29.444 180 113 5 1 175 134 304 3.13e-12 67.8
Msa0846830 AT1G05640.1 31.720 186 122 4 10 192 148 331 2.59e-13 71.2
Msa0846830 AT1G05640.1 36.641 131 77 4 49 176 255 382 1.94e-12 68.6
Msa0846830 AT3G09550.2 30.435 184 123 4 9 189 144 325 2.61e-13 70.9
Msa0846830 AT3G09550.1 30.435 184 123 4 9 189 137 318 3.20e-13 70.9
Msa0846830 AT3G09550.3 30.435 184 123 4 9 189 137 318 3.20e-13 70.9
Msa0846830 AT5G40160.2 30.579 121 77 3 79 198 178 292 3.42e-13 69.3
Msa0846830 AT5G40160.2 28.696 115 82 0 85 199 151 265 1.55e-11 64.7
Msa0846830 AT5G57740.1 33.553 152 76 6 54 192 122 261 4.95e-13 70.1
Msa0846830 AT5G40160.1 29.771 131 87 4 79 206 178 306 6.63e-13 68.9
Msa0846830 AT2G14255.1 28.358 201 136 4 3 199 9 205 1.81e-12 68.6
Msa0846830 AT2G14255.1 26.582 158 113 2 57 213 31 186 5.53e-12 67.0
Msa0846830 AT2G14255.1 32.374 139 88 3 54 189 95 230 6.63e-12 66.6
Msa0846830 AT2G14255.1 27.132 129 82 2 90 206 28 156 2.68e-11 64.7
Msa0846830 AT3G04710.1 28.511 235 106 6 44 243 49 256 1.92e-12 68.2
Msa0846830 AT3G04710.3 27.803 223 89 5 44 199 273 490 2.22e-12 68.2
Msa0846830 AT3G04710.2 28.511 235 105 6 44 243 49 255 2.76e-12 67.8
Msa0846830 AT4G19150.2 32.759 116 74 2 86 200 26 138 6.97e-12 64.7
Msa0846830 AT3G59830.1 31.579 171 108 3 24 187 9 177 7.47e-12 66.2
Msa0846830 AT2G26650.1 40.244 82 49 0 101 182 533 614 9.79e-12 66.2
Msa0846830 AT2G26650.1 31.081 148 88 4 47 188 545 684 1.46e-11 65.9
Msa0846830 AT5G37500.2 31.034 145 95 2 55 199 591 730 1.03e-11 66.2
Msa0846830 AT5G37500.3 31.034 145 95 2 55 199 537 676 1.04e-11 66.2
Msa0846830 AT2G26650.2 40.244 82 49 0 101 182 428 509 1.08e-11 66.2
Msa0846830 AT2G26650.2 31.081 148 88 4 47 188 440 579 1.49e-11 65.9
Msa0846830 AT5G61230.1 37.000 100 57 2 83 176 26 125 1.11e-11 63.2
Msa0846830 AT5G66055.2 32.673 101 68 0 85 185 259 359 1.20e-11 65.5
Msa0846830 AT2G01680.1 30.939 181 112 5 16 189 60 234 1.41e-11 65.5
Msa0846830 AT2G25600.1 31.690 142 92 2 47 188 574 710 1.53e-11 65.9
Msa0846830 AT5G12320.1 35.644 101 65 0 93 193 18 118 5.93e-11 60.1
Msa0846830 AT2G31800.1 37.500 96 57 1 97 192 86 178 7.21e-11 63.5
Msa0846830 AT5G07270.1 30.872 149 84 4 51 189 113 252 8.46e-11 63.2
Msa0846830 AT3G24530.2 32.867 143 87 4 54 187 6 148 9.61e-11 62.8

Find 86 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTAATGTTGGCATTA+TGG 0.170106 5_4:-27609106 None:intergenic
CATTGGGAATTCGGAGATTC+TGG 0.207112 5_4:+27607281 Msa0846830:CDS
CTTCATGTTGCCGCTTCTTT+TGG 0.229765 5_4:+27606568 Msa0846830:CDS
AATATTAATGTTGGCATTAT+GGG 0.246874 5_4:-27609105 None:intergenic
GAATAAATCCTTCTCTTCTA+TGG 0.255756 5_4:-27606446 None:intergenic
GCCACTTTGGCTTGCAATTA+CGG 0.256239 5_4:+27610415 Msa0846830:CDS
AATCTTCATCCGACCTTTGC+TGG 0.277498 5_4:-27609066 None:intergenic
TAATGCCAACATTAATATTA+AGG 0.292110 5_4:+27609109 Msa0846830:CDS
AGGTAGCACTCCTTCTTATA+AGG 0.293510 5_4:+27611400 Msa0846830:intron
TGCTGCCAGCATTGGGAATT+CGG 0.328342 5_4:+27607272 Msa0846830:CDS
TGCTAGCTGCCCGATGCAAC+GGG 0.338078 5_4:-27609287 None:intergenic
TGGCCGGGCCAGATTGCATT+TGG 0.380923 5_4:-27610674 None:intergenic
AACTAATGTTTATGATCCTT+CGG 0.384179 5_4:+27611706 Msa0846830:three_prime_UTR
TTGCATCGGGCAGCTAGCAC+TGG 0.385320 5_4:+27609291 Msa0846830:CDS
TCAGCCGATGAGCCGCATTC+AGG 0.385366 5_4:+27610471 Msa0846830:CDS
ATTCATTCTGCTGCCAGCAT+TGG 0.404125 5_4:+27607264 Msa0846830:CDS
TTCATTCTGCTGCCAGCATT+GGG 0.422094 5_4:+27607265 Msa0846830:CDS
TGGTTCCACCCCGTTGCATC+GGG 0.426096 5_4:+27609278 Msa0846830:CDS
CAAATCACGGCACTCATTAG+AGG 0.434441 5_4:-27609387 None:intergenic
TTGGTTCCACCCCGTTGCAT+CGG 0.439880 5_4:+27609277 Msa0846830:CDS
GTATCATTCAAGCATGGCCT+TGG 0.445360 5_4:-27611517 None:intergenic
TCGAGTGCATACCACATCTT+AGG 0.453106 5_4:-27610643 None:intergenic
CTTGTCCTTAATATTAATGT+TGG 0.455131 5_4:-27609114 None:intergenic
AATGGTCATACACATAAAAC+AGG 0.457405 5_4:-27611577 None:intergenic
GCATTCTTAACCAGTATTTG+AGG 0.457637 5_4:+27611663 Msa0846830:three_prime_UTR
GTTTCTTAGAGAAAGTGCTT+TGG 0.459972 5_4:-27606527 None:intergenic
TAGTGGTGATGAAGAAAGTT+GGG 0.461931 5_4:+27607236 Msa0846830:CDS
GTGCTAGCTGCCCGATGCAA+CGG 0.466543 5_4:-27609288 None:intergenic
GTGACAATAACCTCAAATAC+TGG 0.472834 5_4:-27611673 None:intergenic
ATAGTGGTGATGAAGAAAGT+TGG 0.474854 5_4:+27607235 Msa0846830:CDS
CTGCTCCATGCCTTATAAGA+AGG 0.504054 5_4:-27611410 None:intergenic
GTTCCAAATGCAATCTGGCC+CGG 0.508184 5_4:+27610671 Msa0846830:CDS
GTGGATGTGGAGGACAAGGA+AGG 0.514850 5_4:+27611435 Msa0846830:CDS
TTTGCTGGCTGCATAGTGTA+AGG 0.518159 5_4:-27609051 None:intergenic
CTCTTTGTTATAACAAATCA+CGG 0.520454 5_4:-27609400 None:intergenic
CACCTCAGCAGATGCATCAC+AGG 0.522750 5_4:-27607208 None:intergenic
GCCTCCTGAATGCGGCTCAT+CGG 0.529675 5_4:-27610475 None:intergenic
GTGTTTGTATCATTCAAGCA+TGG 0.530236 5_4:-27611523 None:intergenic
AAGGAAGGGTACACGGTGCT+TGG 0.531206 5_4:+27611450 Msa0846830:CDS
CGTGATTTGTTATAACAAAG+AGG 0.532092 5_4:+27609401 Msa0846830:CDS
TTATTCAAAGCAGCAGAAGA+AGG 0.534236 5_4:+27606463 Msa0846830:CDS
GATACAAACACAAGAGAATG+AGG 0.535878 5_4:+27611535 Msa0846830:exon
AATCTCCGAATTCCCAATGC+TGG 0.540552 5_4:-27607277 None:intergenic
TTCAGGAGGCGTGCCACTCA+TGG 0.540890 5_4:+27610488 Msa0846830:CDS
AAGAGACAGATATGCAAGGT+TGG 0.541804 5_4:-27611631 None:intergenic
TGACCATTGAGAGCATTCAA+TGG 0.542257 5_4:+27611592 Msa0846830:three_prime_UTR
TGTTGTCGATCACGCCACTT+TGG 0.547842 5_4:+27610402 Msa0846830:CDS
TGCATCGGGCAGCTAGCACT+GGG 0.548238 5_4:+27609292 Msa0846830:CDS
AAGCCATTGAATGCTCTCAA+TGG 0.548310 5_4:-27611595 None:intergenic
AAGTGGCGTGATCGACAACA+TGG 0.549497 5_4:-27610399 None:intergenic
CTGGAGGCTTTGTTGAACAA+AGG 0.556222 5_4:+27607300 Msa0846830:CDS
GCACTCCTTCTTATAAGGCA+TGG 0.559998 5_4:+27611405 Msa0846830:CDS
TACGATATTCTCAAATCCGA+AGG 0.561962 5_4:-27611722 None:intergenic
TATAAGGCATGGAGCAGATG+TGG 0.564074 5_4:+27611416 Msa0846830:CDS
AGATGTGGATGTGGAGGACA+AGG 0.564628 5_4:+27611431 Msa0846830:CDS
CAACATTAATATTAAGGACA+AGG 0.567959 5_4:+27609115 Msa0846830:CDS
ACAAGAAACCATAGAAGAGA+AGG 0.572266 5_4:+27606438 Msa0846830:CDS
TCCGTAATTGCAAGCCAAAG+TGG 0.574370 5_4:-27610416 None:intergenic
GTTGATGCTGTTGATAGAGC+TGG 0.574506 5_4:+27609357 Msa0846830:CDS
TTCAGAGGACAATGATTCGA+AGG 0.582576 5_4:-27606497 None:intergenic
GACAGATATGCAAGGTTGGT+AGG 0.582866 5_4:-27611627 None:intergenic
TGCTTTGGAGAGTGATTCAG+AGG 0.583109 5_4:-27606512 None:intergenic
AATATTGATTGATGCTGCCA+AGG 0.587026 5_4:+27611500 Msa0846830:CDS
TTACACTATGCAGCCAGCAA+AGG 0.589849 5_4:+27609053 Msa0846830:CDS
GCCGATGAGCCGCATTCAGG+AGG 0.590125 5_4:+27610474 Msa0846830:CDS
GCATGGAGCAGATGTGGATG+TGG 0.603022 5_4:+27611422 Msa0846830:CDS
CTCAGTGTTTGCCTAAGATG+TGG 0.603766 5_4:+27610632 Msa0846830:CDS
GCGCACCTTGACTGATGAGT+AGG 0.605713 5_4:-27610376 None:intergenic
TCTGCTGAGGTGATAAATAG+TGG 0.606346 5_4:+27607219 Msa0846830:CDS
ATGCTGGCAGCAGAATGAAT+CGG 0.606631 5_4:-27607261 None:intergenic
GTCCTGTGATGCATCTGCTG+AGG 0.610566 5_4:+27607206 Msa0846830:CDS
AGCTGCCCGATGCAACGGGG+TGG 0.618931 5_4:-27609283 None:intergenic
ACTATGCAGCCAGCAAAGGT+CGG 0.624620 5_4:+27609057 Msa0846830:CDS
AGTGGCACGCCTCCTGAATG+CGG 0.627127 5_4:-27610483 None:intergenic
TGGGAATTCGGAGATTCTGG+AGG 0.634438 5_4:+27607284 Msa0846830:CDS
AATCAAAGTAAACATGAACA+TGG 0.634829 5_4:+27606396 Msa0846830:exon
CTGAGAGTGACCAAAAGAAG+CGG 0.635993 5_4:-27606578 None:intergenic
GGAGGACAAGGAAGGGTACA+CGG 0.639207 5_4:+27611443 Msa0846830:CDS
ATTACGGAATTGCAGAGTGA+CGG 0.641799 5_4:+27610431 Msa0846830:CDS
TGGATGTGGAGGACAAGGAA+GGG 0.643078 5_4:+27611436 Msa0846830:CDS
ACTAACGATTTGACCATGAG+TGG 0.658513 5_4:-27610501 None:intergenic
TGGAGCAGATGTGGATGTGG+AGG 0.658645 5_4:+27611425 Msa0846830:CDS
GCAGACCTACTCATCAGTCA+AGG 0.659449 5_4:+27610371 Msa0846830:intron
AGTGGCGTGATCGACAACAT+GGG 0.670830 5_4:-27610398 None:intergenic
ACACAAGAGAATGAGGAACA+AGG 0.671800 5_4:+27611542 Msa0846830:three_prime_UTR
GCTAGCTGCCCGATGCAACG+GGG 0.716203 5_4:-27609286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTATGCAATTTA+AGG - chr5_4:27606638-27606657 None:intergenic 10.0%
!!! CATAAAAATTTAATCTTTTT+TGG + chr5_4:27606645-27606664 Msa0846830:intron 10.0%
!! ATGTTAATATTAAAAACAAT+GGG + chr5_4:27609018-27609037 Msa0846830:CDS 10.0%
!! ATTCCAAAAATAAAATAAAA+TGG + chr5_4:27611000-27611019 Msa0846830:intron 10.0%
!!! AATCCATTTTATTTTATTTT+TGG - chr5_4:27611006-27611025 None:intergenic 10.0%
!! AACATAAAAGCTTATTTATT+TGG + chr5_4:27606849-27606868 Msa0846830:intron 15.0%
!! GATGTTAATATTAAAAACAA+TGG + chr5_4:27609017-27609036 Msa0846830:CDS 15.0%
!! TGTTAATATTAAAAACAATG+GGG + chr5_4:27609019-27609038 Msa0846830:CDS 15.0%
!! AATGTGATTATAATGAAAAT+GGG - chr5_4:27609199-27609218 None:intergenic 15.0%
!! TAATGTGATTATAATGAAAA+TGG - chr5_4:27609200-27609219 None:intergenic 15.0%
!! TATGATAAATTATACTCAAT+CGG - chr5_4:27609847-27609866 None:intergenic 15.0%
!!! AATAAATTGATTACAAGTTT+TGG + chr5_4:27609875-27609894 Msa0846830:intron 15.0%
!!! AAAAGAACATAATTTTACAT+GGG - chr5_4:27610704-27610723 None:intergenic 15.0%
!!! AAAAAGAACATAATTTTACA+TGG - chr5_4:27610705-27610724 None:intergenic 15.0%
!! ATAAAAATCTATTATGTGTT+TGG + chr5_4:27611372-27611391 Msa0846830:intron 15.0%
!!! TTCTGTTTTTTATAATGAGT+CGG + chr5_4:27607049-27607068 Msa0846830:intron 20.0%
!!! TAAGAGATTTAGAATCTATT+TGG + chr5_4:27607351-27607370 Msa0846830:intron 20.0%
!! ATAATCACTTGTACTATAAA+TGG + chr5_4:27607556-27607575 Msa0846830:intron 20.0%
!! ATTAACTTCTGATAGATTTA+GGG + chr5_4:27607613-27607632 Msa0846830:intron 20.0%
!! AATAAGGTAAAAATAGCTTA+TGG - chr5_4:27607891-27607910 None:intergenic 20.0%
!! ATGGAACTATTTGTATAAAT+AGG - chr5_4:27608691-27608710 None:intergenic 20.0%
!! ATTTAGTTAGTTAGTTAGTT+GGG - chr5_4:27608757-27608776 None:intergenic 20.0%
!! AATTTAGTTAGTTAGTTAGT+TGG - chr5_4:27608758-27608777 None:intergenic 20.0%
!! ATATCCTAACAGTAATAATT+TGG + chr5_4:27608847-27608866 Msa0846830:intron 20.0%
!! TATCCTAACAGTAATAATTT+GGG + chr5_4:27608848-27608867 Msa0846830:intron 20.0%
!! GTTAATATTAAAAACAATGG+GGG + chr5_4:27609020-27609039 Msa0846830:CDS 20.0%
!! AATATTAATGTTGGCATTAT+GGG - chr5_4:27609108-27609127 None:intergenic 20.0%
!! TAATATTAATGTTGGCATTA+TGG - chr5_4:27609109-27609128 None:intergenic 20.0%
!! TAATGCCAACATTAATATTA+AGG + chr5_4:27609109-27609128 Msa0846830:CDS 20.0%
!!! AATCATTCATATTAAGCTTT+TGG + chr5_4:27609911-27609930 Msa0846830:intron 20.0%
!! TAATGTGAAGAAATATTGTT+GGG - chr5_4:27610185-27610204 None:intergenic 20.0%
!! ATAATGTGAAGAAATATTGT+TGG - chr5_4:27610186-27610205 None:intergenic 20.0%
!!! TAATCGTATCAATTTTGTTT+TGG + chr5_4:27610597-27610616 Msa0846830:intron 20.0%
!!! TTTAAGATAATATAACAGTG+TGG - chr5_4:27610797-27610816 None:intergenic 20.0%
!!! ATTTGTTTCCATTTTTAATG+AGG + chr5_4:27610853-27610872 Msa0846830:intron 20.0%
!!! TTTGTTTCCATTTTTAATGA+GGG + chr5_4:27610854-27610873 Msa0846830:intron 20.0%
!! GAAAACAAAATAATAGAAAC+TGG - chr5_4:27610942-27610961 None:intergenic 20.0%
!! TCTTCTATTTAGTACTTAAA+AGG + chr5_4:27611069-27611088 Msa0846830:intron 20.0%
! AATCAAAGTAAACATGAACA+TGG + chr5_4:27606396-27606415 Msa0846830:exon 25.0%
! TTTGTATCAAAACCCTAAAT+TGG + chr5_4:27606669-27606688 Msa0846830:intron 25.0%
! TTGTATCAAAACCCTAAATT+GGG + chr5_4:27606670-27606689 Msa0846830:intron 25.0%
!!! TCTGTTTTTTATAATGAGTC+GGG + chr5_4:27607050-27607069 Msa0846830:intron 25.0%
!!! TTGGGTATTATTTTTTGTGA+AGG + chr5_4:27607079-27607098 Msa0846830:intron 25.0%
! TCAAAAGTAAAGACTCAATT+TGG - chr5_4:27607135-27607154 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCGAT+TGG + chr5_4:27607378-27607397 Msa0846830:intron 25.0%
! CATTAACTTCTGATAGATTT+AGG + chr5_4:27607612-27607631 Msa0846830:intron 25.0%
! TTTCATTTGTGATTATCTGT+TGG + chr5_4:27607810-27607829 Msa0846830:intron 25.0%
! CTAAAGATCATATGGAAATA+AGG - chr5_4:27607907-27607926 None:intergenic 25.0%
! CTTATTTCCATATGATCTTT+AGG + chr5_4:27607905-27607924 Msa0846830:intron 25.0%
! TTCATATCCTAAAGATCATA+TGG - chr5_4:27607915-27607934 None:intergenic 25.0%
!!! TTATGCTTTTTTATCGAAAC+AGG + chr5_4:27607977-27607996 Msa0846830:intron 25.0%
!!! TATGCTTTTTTATCGAAACA+GGG + chr5_4:27607978-27607997 Msa0846830:intron 25.0%
!!! GTTGGACTTTATTTTAAGAA+AGG + chr5_4:27608115-27608134 Msa0846830:intron 25.0%
!!! TATTTTAAGAAAGGTTCATG+TGG + chr5_4:27608124-27608143 Msa0846830:intron 25.0%
! AAGTACAATAATTAGATGAG+TGG + chr5_4:27608159-27608178 Msa0846830:intron 25.0%
!! AGTAAACCTTTAAGAACTAT+GGG - chr5_4:27608397-27608416 None:intergenic 25.0%
! CATAGACATTTGTAATTGTT+AGG + chr5_4:27608474-27608493 Msa0846830:intron 25.0%
!! TCTTTTGAATTTAATTCCCT+GGG - chr5_4:27608501-27608520 None:intergenic 25.0%
!! TTCTTTTGAATTTAATTCCC+TGG - chr5_4:27608502-27608521 None:intergenic 25.0%
! TATAGAAAAGTGGTATAGAA+TGG - chr5_4:27608830-27608849 None:intergenic 25.0%
! TTTCCCAAATTATTACTGTT+AGG - chr5_4:27608854-27608873 None:intergenic 25.0%
!! ACGTTCTTATTCTTCATTTT+TGG + chr5_4:27608986-27609005 Msa0846830:intron 25.0%
!!! TCTTATTCTTCATTTTTGGT+AGG + chr5_4:27608990-27609009 Msa0846830:intron 25.0%
! CTTGTCCTTAATATTAATGT+TGG - chr5_4:27609117-27609136 None:intergenic 25.0%
! CAACATTAATATTAAGGACA+AGG + chr5_4:27609115-27609134 Msa0846830:CDS 25.0%
! TGATCATATTACAGTTTACA+AGG - chr5_4:27609255-27609274 None:intergenic 25.0%
! TTGTAAACTGTAATATGATC+AGG + chr5_4:27609254-27609273 Msa0846830:intron 25.0%
!! CTCTTTGTTATAACAAATCA+CGG - chr5_4:27609403-27609422 None:intergenic 25.0%
!! GTTCTTACAATTTTTATCGT+AGG + chr5_4:27609447-27609466 Msa0846830:intron 25.0%
!!! CAGTTGATTTTTCAATCAAT+GGG + chr5_4:27609580-27609599 Msa0846830:intron 25.0%
! GAAAACAAAATCACAATCTT+TGG - chr5_4:27609690-27609709 None:intergenic 25.0%
!!! TATTAAGCTTTTGGAATAGA+TGG + chr5_4:27609920-27609939 Msa0846830:intron 25.0%
!!! TCAACTTTTATTTCAAGTCA+CGG - chr5_4:27610014-27610033 None:intergenic 25.0%
! CGATTAAAAAAGAAACTGAT+CGG - chr5_4:27610583-27610602 None:intergenic 25.0%
! CAGAATTATATAATTTCCCT+TGG - chr5_4:27611243-27611262 None:intergenic 25.0%
!! CTAAGATGAGAAATATGTTT+TGG + chr5_4:27611294-27611313 Msa0846830:intron 25.0%
!! TATTGGAGTCTTCATAATTT+TGG + chr5_4:27611326-27611345 Msa0846830:intron 25.0%
! AACTAATGTTTATGATCCTT+CGG + chr5_4:27611706-27611725 Msa0846830:three_prime_UTR 25.0%
GAATAAATCCTTCTCTTCTA+TGG - chr5_4:27606449-27606468 None:intergenic 30.0%
TGTATCAAAACCCTAAATTG+GGG + chr5_4:27606671-27606690 Msa0846830:intron 30.0%
CTAAAATAAGCCAATCCAAA+CGG - chr5_4:27606717-27606736 None:intergenic 30.0%
CTCCTAATTCAATAGACTAA+GGG - chr5_4:27606920-27606939 None:intergenic 30.0%
ACTCCTAATTCAATAGACTA+AGG - chr5_4:27606921-27606940 None:intergenic 30.0%
TTAGTCTATTGAATTAGGAG+TGG + chr5_4:27606920-27606939 Msa0846830:intron 30.0%
TTAGGAGTGGAAACAAAATT+TGG + chr5_4:27606933-27606952 Msa0846830:intron 30.0%
TTAATCGCGACAAAAACTAA+TGG + chr5_4:27606983-27607002 Msa0846830:intron 30.0%
! AGTCGTTGACATTTTCAAAT+TGG + chr5_4:27607012-27607031 Msa0846830:intron 30.0%
! TTTTTGTGAAGGACTGAATT+TGG + chr5_4:27607090-27607109 Msa0846830:intron 30.0%
!! AAGTTGAAGCTTTGTTTATC+AGG + chr5_4:27607167-27607186 Msa0846830:intron 30.0%
AAGCTCTCATGAAAAGTTTA+TGG - chr5_4:27607448-27607467 None:intergenic 30.0%
! TGATAGATTTAGGGTATGTT+TGG + chr5_4:27607622-27607641 Msa0846830:intron 30.0%
TAAACACTTGTCAGATTGTT+TGG + chr5_4:27607835-27607854 Msa0846830:intron 30.0%
AAACACTTGTCAGATTGTTT+GGG + chr5_4:27607836-27607855 Msa0846830:intron 30.0%
AACTTAACAGTCTCAACTAA+AGG - chr5_4:27608077-27608096 None:intergenic 30.0%
TTTAGTTGAGACTGTTAAGT+TGG + chr5_4:27608076-27608095 Msa0846830:intron 30.0%
!! TTGTCGTGTTTGTGTTTTTA+TGG + chr5_4:27608309-27608328 Msa0846830:intron 30.0%
! CAGTAAACCTTTAAGAACTA+TGG - chr5_4:27608398-27608417 None:intergenic 30.0%
! TAGCTAGTTTAGTTAGTTGA+GGG - chr5_4:27608718-27608737 None:intergenic 30.0%
! TTAGCTAGTTTAGTTAGTTG+AGG - chr5_4:27608719-27608738 None:intergenic 30.0%
AGTTAGTTGGGATTGTTATA+GGG - chr5_4:27608745-27608764 None:intergenic 30.0%
TAGTTAGTTGGGATTGTTAT+AGG - chr5_4:27608746-27608765 None:intergenic 30.0%
ACTGTTAGGATATAGAAAAG+TGG - chr5_4:27608840-27608859 None:intergenic 30.0%
TGAATCTTTCTATCTTCAGA+TGG - chr5_4:27608953-27608972 None:intergenic 30.0%
AAGAATAAGAACGTTCAAGA+TGG - chr5_4:27608980-27608999 None:intergenic 30.0%
AAACTGTAATATGATCAGGT+TGG + chr5_4:27609258-27609277 Msa0846830:intron 30.0%
!! TGTGAACTTTTGATTGAAGA+AGG + chr5_4:27609327-27609346 Msa0846830:CDS 30.0%
!! CGTGATTTGTTATAACAAAG+AGG + chr5_4:27609401-27609420 Msa0846830:CDS 30.0%
! AACCATTGATTGACCATTAA+CGG + chr5_4:27609496-27609515 Msa0846830:intron 30.0%
!! GCAGTTGATTTTTCAATCAA+TGG + chr5_4:27609579-27609598 Msa0846830:intron 30.0%
!! AACTTTTATTTCAAGTCACG+GGG - chr5_4:27610012-27610031 None:intergenic 30.0%
!! CAACTTTTATTTCAAGTCAC+GGG - chr5_4:27610013-27610032 None:intergenic 30.0%
!!! CTTTTCAGGTATATGGTTTA+TGG + chr5_4:27610148-27610167 Msa0846830:intron 30.0%
GTCAAAAAGTTTAAGCAAAC+AGG + chr5_4:27610246-27610265 Msa0846830:intron 30.0%
ATTGGTGCAAAACTACATTT+GGG - chr5_4:27610332-27610351 None:intergenic 30.0%
AATTGGTGCAAAACTACATT+TGG - chr5_4:27610333-27610352 None:intergenic 30.0%
! ATTTTGTTCCAAATGCAATC+TGG + chr5_4:27610666-27610685 Msa0846830:CDS 30.0%
AGCTTAGTATGCTTAACTTT+GGG + chr5_4:27610750-27610769 Msa0846830:intron 30.0%
!! TTCCATTTTTAATGAGGGTA+AGG + chr5_4:27610859-27610878 Msa0846830:intron 30.0%
!! TCCATTTTTAATGAGGGTAA+GGG + chr5_4:27610860-27610879 Msa0846830:intron 30.0%
ATCCATTCTTTAGGTATACA+AGG - chr5_4:27610973-27610992 None:intergenic 30.0%
ATACTGTCAATCCATTCTTT+AGG - chr5_4:27610982-27611001 None:intergenic 30.0%
AACTTGTAAGACGTTATAGA+AGG + chr5_4:27611112-27611131 Msa0846830:intron 30.0%
CTGAATACTAAACAGTATGA+TGG - chr5_4:27611170-27611189 None:intergenic 30.0%
!!! TGTTTTGGTAGTTCTGTTAT+TGG + chr5_4:27611309-27611328 Msa0846830:intron 30.0%
! CTATTATGTGTTTGGTTTAC+AGG + chr5_4:27611380-27611399 Msa0846830:intron 30.0%
AATGGTCATACACATAAAAC+AGG - chr5_4:27611580-27611599 None:intergenic 30.0%
AAAAAAGAGACAGATATGCA+AGG - chr5_4:27611638-27611657 None:intergenic 30.0%
ACAAGAAACCATAGAAGAGA+AGG + chr5_4:27606438-27606457 Msa0846830:CDS 35.0%
TTATTCAAAGCAGCAGAAGA+AGG + chr5_4:27606463-27606482 Msa0846830:CDS 35.0%
!! GTTTCTTAGAGAAAGTGCTT+TGG - chr5_4:27606530-27606549 None:intergenic 35.0%
! AGGTACTCTTTTCCTCAAAA+GGG + chr5_4:27606599-27606618 Msa0846830:intron 35.0%
! AAAAGAAAGAGACCCTTTTG+AGG - chr5_4:27606614-27606633 None:intergenic 35.0%
TGCCCTTAGTCTATTGAATT+AGG + chr5_4:27606915-27606934 Msa0846830:intron 35.0%
! GGTCTTTGACAATTTTCTCA+CGG + chr5_4:27606954-27606973 Msa0846830:intron 35.0%
ATAATGAGTCGGGACTAATT+TGG + chr5_4:27607060-27607079 Msa0846830:intron 35.0%
TAATGAGTCGGGACTAATTT+GGG + chr5_4:27607061-27607080 Msa0846830:intron 35.0%
!! TTGAAGCTTTGTTTATCAGG+TGG + chr5_4:27607170-27607189 Msa0846830:intron 35.0%
! ATAGTGGTGATGAAGAAAGT+TGG + chr5_4:27607235-27607254 Msa0846830:CDS 35.0%
! TAGTGGTGATGAAGAAAGTT+GGG + chr5_4:27607236-27607255 Msa0846830:CDS 35.0%
GGTATGTTTGGATTGATTGA+GGG + chr5_4:27607634-27607653 Msa0846830:intron 35.0%
!!! GATTGATTGAGGGTTTTGAA+GGG + chr5_4:27607644-27607663 Msa0846830:intron 35.0%
!!! ATTGATTGAGGGTTTTGAAG+GGG + chr5_4:27607645-27607664 Msa0846830:intron 35.0%
TAAAGATCTGTTTGGGAGTA+GGG - chr5_4:27607769-27607788 None:intergenic 35.0%
TACTCCCAAACAGATCTTTA+GGG + chr5_4:27607769-27607788 Msa0846830:intron 35.0%
ATAGCTTATGGACATGTCAT+CGG - chr5_4:27607879-27607898 None:intergenic 35.0%
TAATTGTACTGTGAGCTAAG+TGG + chr5_4:27608039-27608058 Msa0846830:intron 35.0%
GGTTTAGTTAACTTAAGCGT+TGG + chr5_4:27608097-27608116 Msa0846830:intron 35.0%
CTGCATTCAATCAAGTTACA+CGG - chr5_4:27608367-27608386 None:intergenic 35.0%
CTAGTACCCATAGTTCTTAA+AGG + chr5_4:27608388-27608407 Msa0846830:intron 35.0%
ATTTGTAATTGTTAGGACCC+AGG + chr5_4:27608481-27608500 Msa0846830:intron 35.0%
TTTGTAATTGTTAGGACCCA+GGG + chr5_4:27608482-27608501 Msa0846830:intron 35.0%
AGTAGTAACTCTACTGTGAA+GGG - chr5_4:27608612-27608631 None:intergenic 35.0%
!! TTAGTTAGTTGAGGGTGTTA+TGG - chr5_4:27608710-27608729 None:intergenic 35.0%
TCTTTCTATCTTCAGATGGA+AGG - chr5_4:27608949-27608968 None:intergenic 35.0%
TATTTAGTTGCACAGTGCTA+AGG + chr5_4:27609660-27609679 Msa0846830:intron 35.0%
ATTTAGTTGCACAGTGCTAA+GGG + chr5_4:27609661-27609680 Msa0846830:intron 35.0%
!!! TTTGTTTTAGTCACTTGCAC+TGG + chr5_4:27609724-27609743 Msa0846830:intron 35.0%
GTTGAAAACAAAACCTCTCA+TGG + chr5_4:27609790-27609809 Msa0846830:intron 35.0%
GTGGAATTATAAACCATGAG+AGG - chr5_4:27609806-27609825 None:intergenic 35.0%
TTAGATCCTTTATGACCAAG+TGG + chr5_4:27609957-27609976 Msa0846830:intron 35.0%
GCTAGGTAAAGACATATGTA+TGG - chr5_4:27610123-27610142 None:intergenic 35.0%
! TTACCTAGCTAAAGCTTTTC+AGG + chr5_4:27610134-27610153 Msa0846830:intron 35.0%
! ATACCTGAAAAGCTTTAGCT+AGG - chr5_4:27610140-27610159 None:intergenic 35.0%
!!! GCTAAAGCTTTTCAGGTATA+TGG + chr5_4:27610141-27610160 Msa0846830:intron 35.0%
GATATTACAGAGGGATGAAA+TGG - chr5_4:27610296-27610315 None:intergenic 35.0%
CTGAAAGAGGATATTACAGA+GGG - chr5_4:27610305-27610324 None:intergenic 35.0%
ACTGAAAGAGGATATTACAG+AGG - chr5_4:27610306-27610325 None:intergenic 35.0%
! ACCAATTTTTCCATCGTTGT+TGG + chr5_4:27610346-27610365 Msa0846830:intron 35.0%
! CCAATTTTTCCATCGTTGTT+GGG + chr5_4:27610347-27610366 Msa0846830:intron 35.0%
! CAATTTTTCCATCGTTGTTG+GGG + chr5_4:27610348-27610367 Msa0846830:intron 35.0%
! AATTTTTCCATCGTTGTTGG+GGG + chr5_4:27610349-27610368 Msa0846830:intron 35.0%
GTTAAACACAAGAAATCCCT+CGG + chr5_4:27610540-27610559 Msa0846830:intron 35.0%
! CATAATTTTACATGGGAGAC+TGG - chr5_4:27610697-27610716 None:intergenic 35.0%
CAGCTTAGTATGCTTAACTT+TGG + chr5_4:27610749-27610768 Msa0846830:intron 35.0%
ACCCTTACCCTCATTAAAAA+TGG - chr5_4:27610864-27610883 None:intergenic 35.0%
! TTTTTAATGAGGGTAAGGGT+AGG + chr5_4:27610864-27610883 Msa0846830:intron 35.0%
TAAGTGATGAGATGATGTGT+TGG - chr5_4:27610909-27610928 None:intergenic 35.0%
CTCCTTGTATACCTAAAGAA+TGG + chr5_4:27610968-27610987 Msa0846830:intron 35.0%
AATAGAAGAAAGCAGTAAGC+TGG - chr5_4:27611058-27611077 None:intergenic 35.0%
TAGAAGGTTGAAAATGCAGT+TGG + chr5_4:27611128-27611147 Msa0846830:intron 35.0%
!!! AACTTTTAGTTTCAACACCG+AGG + chr5_4:27611209-27611228 Msa0846830:intron 35.0%
! AATATTGATTGATGCTGCCA+AGG + chr5_4:27611500-27611519 Msa0846830:CDS 35.0%
GTGTTTGTATCATTCAAGCA+TGG - chr5_4:27611526-27611545 None:intergenic 35.0%
GATACAAACACAAGAGAATG+AGG + chr5_4:27611535-27611554 Msa0846830:exon 35.0%
!!! TGAGGAACAAGGTTTTGTTT+AGG + chr5_4:27611553-27611572 Msa0846830:three_prime_UTR 35.0%
GCATTCTTAACCAGTATTTG+AGG + chr5_4:27611663-27611682 Msa0846830:three_prime_UTR 35.0%
GTGACAATAACCTCAAATAC+TGG - chr5_4:27611676-27611695 None:intergenic 35.0%
TTCAGAGGACAATGATTCGA+AGG - chr5_4:27606500-27606519 None:intergenic 40.0%
! CAGGTACTCTTTTCCTCAAA+AGG + chr5_4:27606598-27606617 Msa0846830:intron 40.0%
GGAAGTAGAACCCCAATTTA+GGG - chr5_4:27606684-27606703 None:intergenic 40.0%
AGGAAGTAGAACCCCAATTT+AGG - chr5_4:27606685-27606704 None:intergenic 40.0%
GGGTTCTACTTCCTAGTTAA+GGG + chr5_4:27606691-27606710 Msa0846830:intron 40.0%
! CAATAGACTAAGGGCATGTT+TGG - chr5_4:27606911-27606930 None:intergenic 40.0%
ATTTGGCCGAGAAAATTGTG+AGG + chr5_4:27607107-27607126 Msa0846830:intron 40.0%
TTTGGCCGAGAAAATTGTGA+GGG + chr5_4:27607108-27607127 Msa0846830:intron 40.0%
! TTGGTCCCTCACAATTTTCT+CGG - chr5_4:27607116-27607135 None:intergenic 40.0%
TCTGCTGAGGTGATAAATAG+TGG + chr5_4:27607219-27607238 Msa0846830:CDS 40.0%
TGAACACTTGTGAGACTGTT+TGG + chr5_4:27607403-27607422 Msa0846830:intron 40.0%
GAACACTTGTGAGACTGTTT+GGG + chr5_4:27607404-27607423 Msa0846830:intron 40.0%
GGGTATGTTTGGATTGATTG+AGG + chr5_4:27607633-27607652 Msa0846830:intron 40.0%
!! GGATTGATTGAGGGTTTTGA+AGG + chr5_4:27607643-27607662 Msa0846830:intron 40.0%
CTAAAGATCTGTTTGGGAGT+AGG - chr5_4:27607770-27607789 None:intergenic 40.0%
CTACTCCCAAACAGATCTTT+AGG + chr5_4:27607768-27607787 Msa0846830:intron 40.0%
CAGACCCTAAAGATCTGTTT+GGG - chr5_4:27607776-27607795 None:intergenic 40.0%
ACAGACCCTAAAGATCTGTT+TGG - chr5_4:27607777-27607796 None:intergenic 40.0%
!! ACAGATCTTTAGGGTCTGTT+TGG + chr5_4:27607778-27607797 Msa0846830:intron 40.0%
AGAAGATGCTGCTAGACATT+AGG - chr5_4:27608004-27608023 None:intergenic 40.0%
GACAATGCAACACAGAAACA+TGG - chr5_4:27608288-27608307 None:intergenic 40.0%
GAGAGAGAGAGAGTAAGAAT+AGG + chr5_4:27608560-27608579 Msa0846830:intron 40.0%
GAAAGAAATCTCTCCTCCAA+GGG + chr5_4:27608582-27608601 Msa0846830:intron 40.0%
GTAGTAACTCTACTGTGAAG+GGG - chr5_4:27608611-27608630 None:intergenic 40.0%
GAGTAGTAACTCTACTGTGA+AGG - chr5_4:27608613-27608632 None:intergenic 40.0%
TCTTCAGATGGAAGGATTGA+CGG - chr5_4:27608941-27608960 None:intergenic 40.0%
TTAAGGACAAGGTTGTAGCT+TGG + chr5_4:27609126-27609145 Msa0846830:intron 40.0%
TGCCGTTAATGGTCAATCAA+TGG - chr5_4:27609501-27609520 None:intergenic 40.0%
ATTGATTGACCATTAACGGC+AGG + chr5_4:27609500-27609519 Msa0846830:intron 40.0%
TTGATTGACCATTAACGGCA+GGG + chr5_4:27609501-27609520 Msa0846830:intron 40.0%
GCATTTCGTTTATAGCAAGG+TGG - chr5_4:27609825-27609844 None:intergenic 40.0%
TCGGCATTTCGTTTATAGCA+AGG - chr5_4:27609828-27609847 None:intergenic 40.0%
TCAAGACCACTTGGTCATAA+AGG - chr5_4:27609966-27609985 None:intergenic 40.0%
GTATTGAACTCAAGACCACT+TGG - chr5_4:27609975-27609994 None:intergenic 40.0%
AAGTTGAATTTCAGCGCACA+TGG + chr5_4:27610027-27610046 Msa0846830:intron 40.0%
AGACGTTGTGGTTGTGTAAA+TGG - chr5_4:27610225-27610244 None:intergenic 40.0%
! AACTTTTTGACGAGACGTTG+TGG - chr5_4:27610237-27610256 None:intergenic 40.0%
CTCTTAGAACTTAGAAGCCT+TGG + chr5_4:27610269-27610288 Msa0846830:intron 40.0%
! ACATTTGGGACTACTGAAAG+AGG - chr5_4:27610318-27610337 None:intergenic 40.0%
CCCAACAACGATGGAAAAAT+TGG - chr5_4:27610350-27610369 None:intergenic 40.0%
ATTACGGAATTGCAGAGTGA+CGG + chr5_4:27610431-27610450 Msa0846830:CDS 40.0%
ACTAACGATTTGACCATGAG+TGG - chr5_4:27610504-27610523 None:intergenic 40.0%
! GTTAGTTTGAGTCAGCAATC+AGG + chr5_4:27610518-27610537 Msa0846830:intron 40.0%
GAAACTGATCGGTTAGAACA+CGG - chr5_4:27610572-27610591 None:intergenic 40.0%
GCATACTAAGCTGTTACAGA+TGG - chr5_4:27610742-27610761 None:intergenic 40.0%
! AGTAAGCTGGAGTCTTGTAA+AGG - chr5_4:27611045-27611064 None:intergenic 40.0%
AGGTAGCACTCCTTCTTATA+AGG + chr5_4:27611400-27611419 Msa0846830:intron 40.0%
ACACAAGAGAATGAGGAACA+AGG + chr5_4:27611542-27611561 Msa0846830:three_prime_UTR 40.0%
!! TGACCATTGAGAGCATTCAA+TGG + chr5_4:27611592-27611611 Msa0846830:three_prime_UTR 40.0%
AAGCCATTGAATGCTCTCAA+TGG - chr5_4:27611598-27611617 None:intergenic 40.0%
AAGAGACAGATATGCAAGGT+TGG - chr5_4:27611634-27611653 None:intergenic 40.0%
!! TGCTTTGGAGAGTGATTCAG+AGG - chr5_4:27606515-27606534 None:intergenic 45.0%
!! CTTCATGTTGCCGCTTCTTT+TGG + chr5_4:27606568-27606587 Msa0846830:CDS 45.0%
CTGAGAGTGACCAAAAGAAG+CGG - chr5_4:27606581-27606600 None:intergenic 45.0%
GGGGTTCTACTTCCTAGTTA+AGG + chr5_4:27606690-27606709 Msa0846830:intron 45.0%
AATCCAAACGGCCCTTAACT+AGG - chr5_4:27606705-27606724 None:intergenic 45.0%
TAGTTAAGGGCCGTTTGGAT+TGG + chr5_4:27606704-27606723 Msa0846830:intron 45.0%
ATGCTGGCAGCAGAATGAAT+CGG - chr5_4:27607264-27607283 None:intergenic 45.0%
ATTCATTCTGCTGCCAGCAT+TGG + chr5_4:27607264-27607283 Msa0846830:CDS 45.0%
TTCATTCTGCTGCCAGCATT+GGG + chr5_4:27607265-27607284 Msa0846830:CDS 45.0%
AATCTCCGAATTCCCAATGC+TGG - chr5_4:27607280-27607299 None:intergenic 45.0%
CATTGGGAATTCGGAGATTC+TGG + chr5_4:27607281-27607300 Msa0846830:CDS 45.0%
!! CTGGAGGCTTTGTTGAACAA+AGG + chr5_4:27607300-27607319 Msa0846830:CDS 45.0%
!!! ATTGAGGGTTTTGAAGGGGA+GGG + chr5_4:27607649-27607668 Msa0846830:intron 45.0%
TTTGGGAGTAGGGTTATGGA+GGG - chr5_4:27607759-27607778 None:intergenic 45.0%
TCTGTTTGGGAGTAGGGTTA+TGG - chr5_4:27607763-27607782 None:intergenic 45.0%
CTATGTGTTTGTGTCGTGTC+AGG - chr5_4:27608459-27608478 None:intergenic 45.0%
GGAAAGAAATCTCTCCTCCA+AGG + chr5_4:27608581-27608600 Msa0846830:intron 45.0%
! TTTGCTGGCTGCATAGTGTA+AGG - chr5_4:27609054-27609073 None:intergenic 45.0%
TTACACTATGCAGCCAGCAA+AGG + chr5_4:27609053-27609072 Msa0846830:CDS 45.0%
AATCTTCATCCGACCTTTGC+TGG - chr5_4:27609069-27609088 None:intergenic 45.0%
! GTTGATGCTGTTGATAGAGC+TGG + chr5_4:27609357-27609376 Msa0846830:CDS 45.0%
CAAATCACGGCACTCATTAG+AGG - chr5_4:27609390-27609409 None:intergenic 45.0%
ATCACAATCCCTGCCGTTAA+TGG - chr5_4:27609512-27609531 None:intergenic 45.0%
AACCTTCACTTTCCCCTCAA+AGG + chr5_4:27609607-27609626 Msa0846830:intron 45.0%
AATGAGCAGTACGCCTTTGA+GGG - chr5_4:27609623-27609642 None:intergenic 45.0%
AAATGAGCAGTACGCCTTTG+AGG - chr5_4:27609624-27609643 None:intergenic 45.0%
GGAATAGATGGTTCGTGACA+TGG + chr5_4:27609932-27609951 Msa0846830:intron 45.0%
TGCGTTTGTGCTCTATGCTT+CGG + chr5_4:27610055-27610074 Msa0846830:intron 45.0%
!! GCCACTTTGGCTTGCAATTA+CGG + chr5_4:27610415-27610434 Msa0846830:CDS 45.0%
TCCGTAATTGCAAGCCAAAG+TGG - chr5_4:27610419-27610438 None:intergenic 45.0%
CTCAGTGTTTGCCTAAGATG+TGG + chr5_4:27610632-27610651 Msa0846830:CDS 45.0%
TCGAGTGCATACCACATCTT+AGG - chr5_4:27610646-27610665 None:intergenic 45.0%
! ATTTTACATGGGAGACTGGC+CGG - chr5_4:27610693-27610712 None:intergenic 45.0%
TTAGGTATACAAGGAGAGCG+AGG - chr5_4:27610964-27610983 None:intergenic 45.0%
GCACTCCTTCTTATAAGGCA+TGG + chr5_4:27611405-27611424 Msa0846830:CDS 45.0%
CTGCTCCATGCCTTATAAGA+AGG - chr5_4:27611413-27611432 None:intergenic 45.0%
TATAAGGCATGGAGCAGATG+TGG + chr5_4:27611416-27611435 Msa0846830:CDS 45.0%
GTATCATTCAAGCATGGCCT+TGG - chr5_4:27611520-27611539 None:intergenic 45.0%
! GACAGATATGCAAGGTTGGT+AGG - chr5_4:27611630-27611649 None:intergenic 45.0%
!!! TATTATTTATAAATTTGTTA+AGG + chr5_4:27606765-27606784 Msa0846830:intron 5.0%
! CGCTTCTTTTGGTCACTCTC+AGG + chr5_4:27606579-27606598 Msa0846830:CDS 50.0%
CTTCCTAGTTAAGGGCCGTT+TGG + chr5_4:27606699-27606718 Msa0846830:intron 50.0%
! TGCTGCCAGCATTGGGAATT+CGG + chr5_4:27607272-27607291 Msa0846830:CDS 50.0%
TGGGAATTCGGAGATTCTGG+AGG + chr5_4:27607284-27607303 Msa0846830:CDS 50.0%
CTTGTGAGACTGTTTGGGAG+AGG + chr5_4:27607409-27607428 Msa0846830:intron 50.0%
!!! GATTGAGGGTTTTGAAGGGG+AGG + chr5_4:27607648-27607667 Msa0846830:intron 50.0%
GTTTGGGAGTAGGGTTATGG+AGG - chr5_4:27607760-27607779 None:intergenic 50.0%
! GTCAGGTGTGTGTGGGTTAT+TGG - chr5_4:27608442-27608461 None:intergenic 50.0%
TACTGTGAAGGGGAAACCCT+TGG - chr5_4:27608601-27608620 None:intergenic 50.0%
CACAAGTGTCAGTGTCGTGT+CGG + chr5_4:27608895-27608914 Msa0846830:intron 50.0%
ACTATGCAGCCAGCAAAGGT+CGG + chr5_4:27609057-27609076 Msa0846830:CDS 50.0%
ATGAGCAGTACGCCTTTGAG+GGG - chr5_4:27609622-27609641 None:intergenic 50.0%
GCATAGAGCACAAACGCACT+CGG - chr5_4:27610053-27610072 None:intergenic 50.0%
GCGTTTGTGCTCTATGCTTC+GGG + chr5_4:27610056-27610075 Msa0846830:intron 50.0%
CAGAGGGATGAAATGGTCCA+AGG - chr5_4:27610289-27610308 None:intergenic 50.0%
AGTGGCGTGATCGACAACAT+GGG - chr5_4:27610401-27610420 None:intergenic 50.0%
AAGTGGCGTGATCGACAACA+TGG - chr5_4:27610402-27610421 None:intergenic 50.0%
TGTTGTCGATCACGCCACTT+TGG + chr5_4:27610402-27610421 Msa0846830:CDS 50.0%
TAGAACACGGAGGTTTCCGA+GGG - chr5_4:27610559-27610578 None:intergenic 50.0%
TTAGAACACGGAGGTTTCCG+AGG - chr5_4:27610560-27610579 None:intergenic 50.0%
ACTGATCGGTTAGAACACGG+AGG - chr5_4:27610569-27610588 None:intergenic 50.0%
GTTCCAAATGCAATCTGGCC+CGG + chr5_4:27610671-27610690 Msa0846830:CDS 50.0%
!! TTTTACATGGGAGACTGGCC+GGG - chr5_4:27610692-27610711 None:intergenic 50.0%
AGTTTCAACACCGAGGTGCA+AGG + chr5_4:27611216-27611235 Msa0846830:intron 50.0%
GTTTCAACACCGAGGTGCAA+GGG + chr5_4:27611217-27611236 Msa0846830:intron 50.0%
AGATGTGGATGTGGAGGACA+AGG + chr5_4:27611431-27611450 Msa0846830:CDS 50.0%
TGGATGTGGAGGACAAGGAA+GGG + chr5_4:27611436-27611455 Msa0846830:CDS 50.0%
GTCCTGTGATGCATCTGCTG+AGG + chr5_4:27607206-27607225 Msa0846830:CDS 55.0%
CACCTCAGCAGATGCATCAC+AGG - chr5_4:27607211-27607230 None:intergenic 55.0%
GTGTCGTGTCAGGTGTGTGT+GGG - chr5_4:27608449-27608468 None:intergenic 55.0%
TGTGTCGTGTCAGGTGTGTG+TGG - chr5_4:27608450-27608469 None:intergenic 55.0%
TGTGAAGGGGAAACCCTTGG+AGG - chr5_4:27608598-27608617 None:intergenic 55.0%
! TGTCAGTGTCGTGTCGGTGT+TGG + chr5_4:27608901-27608920 Msa0846830:intron 55.0%
TTGGTTCCACCCCGTTGCAT+CGG + chr5_4:27609277-27609296 Msa0846830:CDS 55.0%
! CGCCTTTGAGGGGAAAGTGA+AGG - chr5_4:27609612-27609631 None:intergenic 55.0%
! TTTCAAGTCACGGGGCAGCA+AGG - chr5_4:27610004-27610023 None:intergenic 55.0%
CTCTATGCTTCGGGTGTGTG+TGG + chr5_4:27610065-27610084 Msa0846830:intron 55.0%
GCGCACCTTGACTGATGAGT+AGG - chr5_4:27610379-27610398 None:intergenic 55.0%
GCATGGAGCAGATGTGGATG+TGG + chr5_4:27611422-27611441 Msa0846830:CDS 55.0%
TGGAGCAGATGTGGATGTGG+AGG + chr5_4:27611425-27611444 Msa0846830:CDS 55.0%
GTGGATGTGGAGGACAAGGA+AGG + chr5_4:27611435-27611454 Msa0846830:CDS 55.0%
! GGAGGACAAGGAAGGGTACA+CGG + chr5_4:27611443-27611462 Msa0846830:CDS 55.0%
! AAGGAAGGGTACACGGTGCT+TGG + chr5_4:27611450-27611469 Msa0846830:CDS 55.0%
TGGTTCCACCCCGTTGCATC+GGG + chr5_4:27609278-27609297 Msa0846830:CDS 60.0%
TGCTAGCTGCCCGATGCAAC+GGG - chr5_4:27609290-27609309 None:intergenic 60.0%
GTGCTAGCTGCCCGATGCAA+CGG - chr5_4:27609291-27609310 None:intergenic 60.0%
TTGCATCGGGCAGCTAGCAC+TGG + chr5_4:27609291-27609310 Msa0846830:CDS 60.0%
TGCATCGGGCAGCTAGCACT+GGG + chr5_4:27609292-27609311 Msa0846830:CDS 60.0%
TCAGCCGATGAGCCGCATTC+AGG + chr5_4:27610471-27610490 Msa0846830:CDS 60.0%
GCCTCCTGAATGCGGCTCAT+CGG - chr5_4:27610478-27610497 None:intergenic 60.0%
AGTGGCACGCCTCCTGAATG+CGG - chr5_4:27610486-27610505 None:intergenic 60.0%
! TTCAGGAGGCGTGCCACTCA+TGG + chr5_4:27610488-27610507 Msa0846830:CDS 60.0%
TGGCCGGGCCAGATTGCATT+TGG - chr5_4:27610677-27610696 None:intergenic 60.0%
TTCCCTTGGCCCTTGCACCT+CGG - chr5_4:27611229-27611248 None:intergenic 60.0%
GCTAGCTGCCCGATGCAACG+GGG - chr5_4:27609289-27609308 None:intergenic 65.0%
GCCGATGAGCCGCATTCAGG+AGG + chr5_4:27610474-27610493 Msa0846830:CDS 65.0%
ACACCGAGGTGCAAGGGCCA+AGG + chr5_4:27611223-27611242 Msa0846830:intron 65.0%
CACCGAGGTGCAAGGGCCAA+GGG + chr5_4:27611224-27611243 Msa0846830:intron 65.0%
AGCTGCCCGATGCAACGGGG+TGG - chr5_4:27609286-27609305 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 27606376 27611735 27606376 ID=Msa0846830;Name=Msa0846830
chr5_4 mRNA 27606376 27611735 27606376 ID=Msa0846830-mRNA-1;Parent=Msa0846830;Name=Msa0846830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=33|0.5|0.71|0.71|1|1|7|199|326
chr5_4 exon 27606376 27606600 27606376 ID=Msa0846830-mRNA-1:exon:10596;Parent=Msa0846830-mRNA-1
chr5_4 exon 27607189 27607321 27607189 ID=Msa0846830-mRNA-1:exon:10597;Parent=Msa0846830-mRNA-1
chr5_4 exon 27609012 27609136 27609012 ID=Msa0846830-mRNA-1:exon:10598;Parent=Msa0846830-mRNA-1
chr5_4 exon 27609276 27609422 27609276 ID=Msa0846830-mRNA-1:exon:10599;Parent=Msa0846830-mRNA-1
chr5_4 exon 27610375 27610509 27610375 ID=Msa0846830-mRNA-1:exon:10600;Parent=Msa0846830-mRNA-1
chr5_4 exon 27610631 27610744 27610631 ID=Msa0846830-mRNA-1:exon:10601;Parent=Msa0846830-mRNA-1
chr5_4 exon 27611402 27611735 27611402 ID=Msa0846830-mRNA-1:exon:10602;Parent=Msa0846830-mRNA-1
chr5_4 five_prime_UTR 27606376 27606408 27606376 ID=Msa0846830-mRNA-1:five_prime_utr;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27606409 27606600 27606409 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27607189 27607321 27607189 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27609012 27609136 27609012 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27609276 27609422 27609276 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27610375 27610509 27610375 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27610631 27610744 27610631 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 CDS 27611402 27611536 27611402 ID=Msa0846830-mRNA-1:cds;Parent=Msa0846830-mRNA-1
chr5_4 three_prime_UTR 27611537 27611735 27611537 ID=Msa0846830-mRNA-1:three_prime_utr;Parent=Msa0846830-mRNA-1
Gene Sequence

>Msa0846830

ATGAACATGGAAGTAGACACTGAGAACAAACAAGAAACCATAGAAGAGAAGGATTTATTCAAAGCAGCAGAAGAAGGAGATTCTTCAACCTTCGAATCATTGTCCTCTGAATCACTCTCCAAAGCACTTTCTCTAAGAAACGAAGACGATCGTTCTCTTCTTCATGTTGCCGCTTCTTTTGGTCACTCTCAGGTGGTGAAGATATTGTTGTCCTGTGATGCATCTGCTGAGGTGATAAATAGTGGTGATGAAGAAAGTTGGGCACCGATTCATTCTGCTGCCAGCATTGGGAATTCGGAGATTCTGGAGGCTTTGTTGAACAAAGGAGCTGATGTTAATATTAAAAACAATGGGGGACGCACTGCCTTACACTATGCAGCCAGCAAAGGTCGGATGAAGATTGCTGAAATACTCATCTCCCATAATGCCAACATTAATATTAAGGACAAGGTTGGTTCCACCCCGTTGCATCGGGCAGCTAGCACTGGGAATTCTGAGTTGTGTGAACTTTTGATTGAAGAAGGAGCTGATGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAGTGCCGTGATTTGTTATAACAAAGAGACCTACTCATCAGTCAAGGTGCGCCCATGTTGTCGATCACGCCACTTTGGCTTGCAATTACGGAATTGCAGAGTGACGGCATCTTCTGCGACGAGTTCAGCCGATGAGCCGCATTCAGGAGGCGTGCCACTCATGTCTCAGTGTTTGCCTAAGATGTGGTATGCACTCGAATTTTGTTCCAAATGCAATCTGGCCCGGCCAGTCTCCCATGTAAAATTATGTTCTTTTTCTCTTGCAACTGTTCCATCTGTAGCACTCCTTCTTATAAGGCATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACGGTGCTTGGTCGAATTACTGACGATGAGTTTAGATCAATATTGATTGATGCTGCCAAGGCCATGCTTGAATGA
Protein sequence

>Msa0846830

MNMEVDTENKQETIEEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASFGHSQVVKILLSCDASAEVINSGDEESWAPIHSAASIGNSEILEALLNKGADVNIKNNGGRTALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRAASTGNSELCELLIEEGADVDAVDRAGQTPLMSAVICYNKETYSSVKVRPCCRSRHFGLQLRNCRVTASSATSSADEPHSGGVPLMSQCLPKMWYALEFCSKCNLARPVSHVKLCSFSLATVPSVALLLIRHGADVDVEDKEGYTVLGRITDDEFRSILIDAAKAMLE*