Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769630 | A0A396GG85 | 46.207 | 145 | 54 | 3 | 169 | 309 | 5 | 129 | 3.37e-15 | 81.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0769630 | Msa0800030 | 0.842856 | 2.002629e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769630 | MtrunA17_Chr8g0341401 | 46.207 | 145 | 54 | 3 | 169 | 309 | 5 | 129 | 6.49e-19 | 81.3 |
| Msa0769630 | MtrunA17_Chr8g0358441 | 41.212 | 165 | 76 | 6 | 162 | 308 | 89 | 250 | 3.12e-18 | 82.8 |
| Msa0769630 | MtrunA17_Chr8g0341371 | 53.153 | 111 | 37 | 4 | 209 | 308 | 93 | 199 | 1.15e-17 | 80.9 |
| Msa0769630 | MtrunA17_Chr8g0356721 | 47.015 | 134 | 51 | 5 | 192 | 308 | 62 | 192 | 1.42e-17 | 79.7 |
| Msa0769630 | MtrunA17_Chr8g0356751 | 47.015 | 134 | 51 | 5 | 192 | 308 | 62 | 192 | 1.42e-17 | 79.7 |
| Msa0769630 | MtrunA17_Chr8g0356791 | 41.401 | 157 | 68 | 3 | 157 | 309 | 26 | 162 | 2.57e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGCTTCTTTCTCTTTCTT+TGG | 0.142893 | 5_2:+38222384 | None:intergenic |
| TTGTATTGCTTTCAGTTATT+TGG | 0.167940 | 5_2:-38222714 | Msa0769630:CDS |
| GGTAAAAGGTTCTCTGTTTC+CGG | 0.179246 | 5_2:+38223247 | None:intergenic |
| ATCCTCTTGAGCGCTATTTA+AGG | 0.187026 | 5_2:+38222673 | None:intergenic |
| CAGCCTGACGTAGGTATTTA+TGG | 0.245558 | 5_2:+38223226 | None:intergenic |
| GGAAGAGTTGGATGCTGATA+TGG | 0.261335 | 5_2:-38222621 | Msa0769630:CDS |
| CCTCTTCTTTCATCAGCTCC+TGG | 0.271580 | 5_2:+38222596 | None:intergenic |
| ACGTAGGTATTTATGGTAAA+AGG | 0.273045 | 5_2:+38223233 | None:intergenic |
| TTATTTGGAGACTTGTCTTT+TGG | 0.275995 | 5_2:-38222699 | Msa0769630:CDS |
| TAAGGCCATCACAACTGATA+TGG | 0.290060 | 5_2:-38222549 | Msa0769630:CDS |
| GTGCTTCTTTCTCTTTCTTT+GGG | 0.299866 | 5_2:+38222385 | None:intergenic |
| CTCTTCTTTCATCAGCTCCT+GGG | 0.315736 | 5_2:+38222597 | None:intergenic |
| GGCTATACTCAAGTGTTTAA+AGG | 0.322143 | 5_2:-38223112 | Msa0769630:CDS |
| TCTTCTGAGGCAAGTTTCTC+TGG | 0.340128 | 5_2:-38222915 | Msa0769630:CDS |
| CTCTGTTTCCGGGTCAAATC+AGG | 0.347338 | 5_2:+38223258 | None:intergenic |
| AAGAGTTGGTGGAGGCTGAT+AGG | 0.362424 | 5_2:-38222475 | Msa0769630:CDS |
| GAGCATCTTGAAATTCTTCT+CGG | 0.376887 | 5_2:+38222753 | None:intergenic |
| ACGCATGGGGCCAGAGAACT+TGG | 0.377428 | 5_2:+38223290 | None:intergenic |
| TTCCCACGTCGTCCTGCGTT+TGG | 0.380194 | 5_2:-38223501 | Msa0769630:CDS |
| GGTTTCAAGTGTCGCATTGA+TGG | 0.389397 | 5_2:-38222942 | Msa0769630:CDS |
| GTAAAAGGTTCTCTGTTTCC+GGG | 0.398083 | 5_2:+38223248 | None:intergenic |
| TTCCTTCTTTCTCTTTCTCT+CGG | 0.405594 | 5_2:+38222496 | None:intergenic |
| ACCTTCAACTTGCCGCTAAA+GGG | 0.417139 | 5_2:-38223075 | Msa0769630:intron |
| GTCCTGCGTTTGGTTTGGTT+TGG | 0.421826 | 5_2:-38223491 | Msa0769630:CDS |
| ATGAATGAATGAATGAATTT+CGG | 0.422001 | 5_2:+38223553 | None:intergenic |
| CATTGATGGCCTTTCTTCTG+AGG | 0.428624 | 5_2:-38222928 | Msa0769630:CDS |
| TCTTCTTTCATCAGCTCCTA+TGG | 0.432107 | 5_2:+38222427 | None:intergenic |
| AACCTTCAACTTGCCGCTAA+AGG | 0.433311 | 5_2:-38223076 | Msa0769630:CDS |
| GAATGAGATGGAGGCTGATA+AGG | 0.433374 | 5_2:-38222567 | Msa0769630:CDS |
| TCTATCAATCCCAAGTTCTC+TGG | 0.433691 | 5_2:-38223300 | Msa0769630:CDS |
| ACGTCGTCCTGCGTTTGGTT+TGG | 0.451137 | 5_2:-38223496 | Msa0769630:CDS |
| AAAGAGAAAGAAGGAAGAGT+TGG | 0.456774 | 5_2:-38222489 | Msa0769630:CDS |
| GTCTTTAGCCTTACAAAAGA+AGG | 0.467568 | 5_2:-38222642 | Msa0769630:CDS |
| GAGAAAGAAGGAAGAGTTGG+TGG | 0.470031 | 5_2:-38222486 | Msa0769630:CDS |
| ACCCTTTAGCGGCAAGTTGA+AGG | 0.470251 | 5_2:+38223074 | None:intergenic |
| AAGGCCATCACAACTGATAT+GGG | 0.471581 | 5_2:-38222548 | Msa0769630:CDS |
| GCAGCAGCACCATCACCATC+TGG | 0.481182 | 5_2:+38223183 | None:intergenic |
| GGTTTGGTTTGGTTTGCTCA+AGG | 0.485052 | 5_2:-38223480 | Msa0769630:intron |
| AGAGTTGGTGGAGGCTGATA+GGG | 0.498363 | 5_2:-38222474 | Msa0769630:CDS |
| TTACCATAAATACCTACGTC+AGG | 0.499994 | 5_2:-38223229 | Msa0769630:CDS |
| ATAGAGCGCTTCATAACTGA+TGG | 0.501066 | 5_2:+38223318 | None:intergenic |
| AGAAACTTGCCTCAGAAGAA+AGG | 0.502767 | 5_2:+38222919 | None:intergenic |
| TTTCATCAGCTCCTATGGCT+CGG | 0.502971 | 5_2:+38222432 | None:intergenic |
| AAAGAAGGAAGAGTTGGTGG+AGG | 0.503176 | 5_2:-38222483 | Msa0769630:CDS |
| TGATTTGAGTTACCCTTTAG+CGG | 0.504537 | 5_2:+38223063 | None:intergenic |
| TTGGATGCTGATATGGGCCC+AGG | 0.504712 | 5_2:-38222614 | Msa0769630:CDS |
| GAAGAGTTGGATGCTGATAT+GGG | 0.510628 | 5_2:-38222620 | Msa0769630:CDS |
| AAGAAGCTCAGCCGAGCCAT+AGG | 0.520622 | 5_2:-38222443 | Msa0769630:CDS |
| TGTTTAAAGGAGGCTTCGAA+TGG | 0.535251 | 5_2:-38223099 | Msa0769630:CDS |
| AAGAAGACGCGATGAGCGAG+TGG | 0.535591 | 5_2:+38223525 | None:intergenic |
| ATCAGGACCTCTGTAACGCA+TGG | 0.535954 | 5_2:+38223275 | None:intergenic |
| ATACCTACGTCAGGCTGCCA+TGG | 0.536209 | 5_2:-38223220 | Msa0769630:CDS |
| TTGGCCCATATCAGTTGTGA+TGG | 0.547379 | 5_2:+38222544 | None:intergenic |
| CTTACAAAAGAAGGAAGAGT+TGG | 0.558318 | 5_2:-38222633 | Msa0769630:CDS |
| AAGAATTTCAAGATGCTCGA+AGG | 0.559260 | 5_2:-38222748 | Msa0769630:CDS |
| TCAGGACCTCTGTAACGCAT+GGG | 0.567181 | 5_2:+38223276 | None:intergenic |
| AAACCAAACGCAGGACGACG+TGG | 0.571605 | 5_2:+38223498 | None:intergenic |
| GGTGGAGGCTGATAGGGCTA+TGG | 0.577374 | 5_2:-38222468 | Msa0769630:CDS |
| TTATCAGACAAAACTGAACA+TGG | 0.580893 | 5_2:-38222963 | Msa0769630:intron |
| TGCCTTAAATAGCGCTCAAG+AGG | 0.593957 | 5_2:-38222675 | Msa0769630:CDS |
| GGCCGAGAGAAAGAGAAAGA+AGG | 0.595246 | 5_2:-38222498 | Msa0769630:CDS |
| CCAGGAGCTGATGAAAGAAG+AGG | 0.599571 | 5_2:-38222596 | Msa0769630:CDS |
| TATACTCAAGTGTTTAAAGG+AGG | 0.607573 | 5_2:-38223109 | Msa0769630:CDS |
| ATCACAACTGATATGGGCCA+AGG | 0.613279 | 5_2:-38222542 | Msa0769630:CDS |
| ACAGAGGTCCTGATTTGACC+CGG | 0.613628 | 5_2:-38223266 | Msa0769630:CDS |
| TTTAACCCTCCAGATGGTGA+TGG | 0.616009 | 5_2:-38223192 | Msa0769630:CDS |
| CAGGAGCTGATGAAAGAAGA+GGG | 0.617975 | 5_2:-38222595 | Msa0769630:CDS |
| TGGAGGGTTAAAGACATCCA+TGG | 0.629527 | 5_2:+38223203 | None:intergenic |
| TCTGGCCCCATGCGTTACAG+AGG | 0.633689 | 5_2:-38223282 | Msa0769630:CDS |
| GATGTCTTTAACCCTCCAGA+TGG | 0.640094 | 5_2:-38223198 | Msa0769630:CDS |
| GCAGCACCATCACCATCTGG+AGG | 0.644876 | 5_2:+38223186 | None:intergenic |
| CGCATGGGGCCAGAGAACTT+GGG | 0.645492 | 5_2:+38223291 | None:intergenic |
| AGCTGTTGAAAAGAATGAGA+TGG | 0.645663 | 5_2:-38222519 | Msa0769630:CDS |
| AACCAAACGCAGGACGACGT+GGG | 0.646179 | 5_2:+38223499 | None:intergenic |
| AACCAAACCAAACCAAACGC+AGG | 0.657560 | 5_2:+38223489 | None:intergenic |
| CAGGACCTCTGTAACGCATG+GGG | 0.658738 | 5_2:+38223277 | None:intergenic |
| CATCCATGGCAGCCTGACGT+AGG | 0.659417 | 5_2:+38223217 | None:intergenic |
| ATATCAATCTCTAAACACGC+AGG | 0.676167 | 5_2:-38222801 | Msa0769630:CDS |
| CAGCACCATCACCATCTGGA+GGG | 0.677504 | 5_2:+38223187 | None:intergenic |
| TCATAACTGATGGATTGACA+CGG | 0.686861 | 5_2:+38223328 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGATAAAATGAAAAAG+AGG | + | chr5_2:38222906-38222925 | None:intergenic | 15.0% |
| !! | ATAAAGATAAAATGAAAAAG+AGG | + | chr5_2:38222906-38222925 | None:intergenic | 15.0% |
| !! | ATGAATGAATGAATGAATTT+CGG | + | chr5_2:38222393-38222412 | None:intergenic | 20.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | + | chr5_2:38222494-38222513 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | + | chr5_2:38222495-38222514 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+AGG | - | chr5_2:38222783-38222802 | Msa0769630:CDS | 20.0% |
| !!! | TCATTTTATCTTTATTGATC+AGG | - | chr5_2:38222911-38222930 | Msa0769630:CDS | 20.0% |
| !!! | CATTTTATCTTTATTGATCA+GGG | - | chr5_2:38222912-38222931 | Msa0769630:CDS | 20.0% |
| !! | ATGAATGAATGAATGAATTT+CGG | + | chr5_2:38222393-38222412 | None:intergenic | 20.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | + | chr5_2:38222494-38222513 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | + | chr5_2:38222495-38222514 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+AGG | - | chr5_2:38222783-38222802 | Msa0769630:CDS | 20.0% |
| !!! | TCATTTTATCTTTATTGATC+AGG | - | chr5_2:38222911-38222930 | Msa0769630:CDS | 20.0% |
| !!! | CATTTTATCTTTATTGATCA+GGG | - | chr5_2:38222912-38222931 | Msa0769630:CDS | 20.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | + | chr5_2:38222590-38222609 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | - | chr5_2:38222589-38222608 | Msa0769630:CDS | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | - | chr5_2:38222590-38222609 | Msa0769630:CDS | 25.0% |
| ! | TTGTATTGCTTTCAGTTATT+TGG | - | chr5_2:38223229-38223248 | Msa0769630:CDS | 25.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | + | chr5_2:38222590-38222609 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | - | chr5_2:38222589-38222608 | Msa0769630:CDS | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | - | chr5_2:38222590-38222609 | Msa0769630:CDS | 25.0% |
| ! | TTGTATTGCTTTCAGTTATT+TGG | - | chr5_2:38223229-38223248 | Msa0769630:CDS | 25.0% |
| TCATAATATCTTCTGTGAAC+TGG | - | chr5_2:38222521-38222540 | Msa0769630:CDS | 30.0% | |
| CATAATATCTTCTGTGAACT+GGG | - | chr5_2:38222522-38222541 | Msa0769630:CDS | 30.0% | |
| ATAATATCTTCTGTGAACTG+GGG | - | chr5_2:38222523-38222542 | Msa0769630:CDS | 30.0% | |
| ! | AAATAAGAAAGCATAGGGTA+AGG | + | chr5_2:38222564-38222583 | None:intergenic | 30.0% |
| ACGTAGGTATTTATGGTAAA+AGG | + | chr5_2:38222713-38222732 | None:intergenic | 30.0% | |
| !!! | ACAATTGAAGGTTACTTTTC+AGG | - | chr5_2:38222795-38222814 | Msa0769630:CDS | 30.0% |
| TATACTCAAGTGTTTAAAGG+AGG | - | chr5_2:38222834-38222853 | Msa0769630:intron | 30.0% | |
| TTATCAGACAAAACTGAACA+TGG | - | chr5_2:38222980-38222999 | Msa0769630:intron | 30.0% | |
| ! | TTATTTGGAGACTTGTCTTT+TGG | - | chr5_2:38223244-38223263 | Msa0769630:CDS | 30.0% |
| TCATAATATCTTCTGTGAAC+TGG | - | chr5_2:38222521-38222540 | Msa0769630:CDS | 30.0% | |
| CATAATATCTTCTGTGAACT+GGG | - | chr5_2:38222522-38222541 | Msa0769630:CDS | 30.0% | |
| ATAATATCTTCTGTGAACTG+GGG | - | chr5_2:38222523-38222542 | Msa0769630:CDS | 30.0% | |
| ! | AAATAAGAAAGCATAGGGTA+AGG | + | chr5_2:38222564-38222583 | None:intergenic | 30.0% |
| ACGTAGGTATTTATGGTAAA+AGG | + | chr5_2:38222713-38222732 | None:intergenic | 30.0% | |
| !!! | ACAATTGAAGGTTACTTTTC+AGG | - | chr5_2:38222795-38222814 | Msa0769630:CDS | 30.0% |
| TATACTCAAGTGTTTAAAGG+AGG | - | chr5_2:38222834-38222853 | Msa0769630:intron | 30.0% | |
| TTATCAGACAAAACTGAACA+TGG | - | chr5_2:38222980-38222999 | Msa0769630:intron | 30.0% | |
| ! | TTATTTGGAGACTTGTCTTT+TGG | - | chr5_2:38223244-38223263 | Msa0769630:CDS | 30.0% |
| ! | GGAGCAAATAAGAAAGCATA+GGG | + | chr5_2:38222569-38222588 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | + | chr5_2:38222570-38222589 | None:intergenic | 35.0% |
| !! | TCATAACTGATGGATTGACA+CGG | + | chr5_2:38222618-38222637 | None:intergenic | 35.0% |
| TTACCATAAATACCTACGTC+AGG | - | chr5_2:38222714-38222733 | Msa0769630:CDS | 35.0% | |
| GGCTATACTCAAGTGTTTAA+AGG | - | chr5_2:38222831-38222850 | Msa0769630:CDS | 35.0% | |
| ! | TGATTTGAGTTACCCTTTAG+CGG | + | chr5_2:38222883-38222902 | None:intergenic | 35.0% |
| !! | TCAGGGCTTTATTCAATTCT+TGG | - | chr5_2:38222929-38222948 | Msa0769630:CDS | 35.0% |
| ATATCAATCTCTAAACACGC+AGG | - | chr5_2:38223142-38223161 | Msa0769630:intron | 35.0% | |
| !! | AGCAAGCTGTAACTTTTTCT+TGG | + | chr5_2:38223168-38223187 | None:intergenic | 35.0% |
| GAGCATCTTGAAATTCTTCT+CGG | + | chr5_2:38223193-38223212 | None:intergenic | 35.0% | |
| AAGAATTTCAAGATGCTCGA+AGG | - | chr5_2:38223195-38223214 | Msa0769630:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | - | chr5_2:38223301-38223320 | Msa0769630:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | + | chr5_2:38223312-38223331 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | - | chr5_2:38223310-38223329 | Msa0769630:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | - | chr5_2:38223364-38223383 | Msa0769630:intron | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | - | chr5_2:38223424-38223443 | Msa0769630:intron | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | + | chr5_2:38223450-38223469 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | - | chr5_2:38223454-38223473 | Msa0769630:intron | 35.0% | |
| GTGCTTCTTTCTCTTTCTTT+GGG | + | chr5_2:38223561-38223580 | None:intergenic | 35.0% | |
| TGTGCTTCTTTCTCTTTCTT+TGG | + | chr5_2:38223562-38223581 | None:intergenic | 35.0% | |
| ! | GGAGCAAATAAGAAAGCATA+GGG | + | chr5_2:38222569-38222588 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | + | chr5_2:38222570-38222589 | None:intergenic | 35.0% |
| !! | TCATAACTGATGGATTGACA+CGG | + | chr5_2:38222618-38222637 | None:intergenic | 35.0% |
| TTACCATAAATACCTACGTC+AGG | - | chr5_2:38222714-38222733 | Msa0769630:CDS | 35.0% | |
| GGCTATACTCAAGTGTTTAA+AGG | - | chr5_2:38222831-38222850 | Msa0769630:CDS | 35.0% | |
| ! | TGATTTGAGTTACCCTTTAG+CGG | + | chr5_2:38222883-38222902 | None:intergenic | 35.0% |
| !! | TCAGGGCTTTATTCAATTCT+TGG | - | chr5_2:38222929-38222948 | Msa0769630:CDS | 35.0% |
| ATATCAATCTCTAAACACGC+AGG | - | chr5_2:38223142-38223161 | Msa0769630:intron | 35.0% | |
| !! | AGCAAGCTGTAACTTTTTCT+TGG | + | chr5_2:38223168-38223187 | None:intergenic | 35.0% |
| GAGCATCTTGAAATTCTTCT+CGG | + | chr5_2:38223193-38223212 | None:intergenic | 35.0% | |
| AAGAATTTCAAGATGCTCGA+AGG | - | chr5_2:38223195-38223214 | Msa0769630:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | - | chr5_2:38223301-38223320 | Msa0769630:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | + | chr5_2:38223312-38223331 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | - | chr5_2:38223310-38223329 | Msa0769630:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | - | chr5_2:38223364-38223383 | Msa0769630:intron | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | - | chr5_2:38223424-38223443 | Msa0769630:intron | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | + | chr5_2:38223450-38223469 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | - | chr5_2:38223454-38223473 | Msa0769630:intron | 35.0% | |
| GTGCTTCTTTCTCTTTCTTT+GGG | + | chr5_2:38223561-38223580 | None:intergenic | 35.0% | |
| TGTGCTTCTTTCTCTTTCTT+TGG | + | chr5_2:38223562-38223581 | None:intergenic | 35.0% | |
| ! | ATAGAGCGCTTCATAACTGA+TGG | + | chr5_2:38222628-38222647 | None:intergenic | 40.0% |
| TCTATCAATCCCAAGTTCTC+TGG | - | chr5_2:38222643-38222662 | Msa0769630:CDS | 40.0% | |
| GTAAAAGGTTCTCTGTTTCC+GGG | + | chr5_2:38222698-38222717 | None:intergenic | 40.0% | |
| GGTAAAAGGTTCTCTGTTTC+CGG | + | chr5_2:38222699-38222718 | None:intergenic | 40.0% | |
| TGTTTAAAGGAGGCTTCGAA+TGG | - | chr5_2:38222844-38222863 | Msa0769630:intron | 40.0% | |
| AGAAACTTGCCTCAGAAGAA+AGG | + | chr5_2:38223027-38223046 | None:intergenic | 40.0% | |
| ATCCTCTTGAGCGCTATTTA+AGG | + | chr5_2:38223273-38223292 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | - | chr5_2:38223323-38223342 | Msa0769630:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | - | chr5_2:38223367-38223386 | Msa0769630:intron | 40.0% | |
| TAAGGCCATCACAACTGATA+TGG | - | chr5_2:38223394-38223413 | Msa0769630:intron | 40.0% | |
| AAGGCCATCACAACTGATAT+GGG | - | chr5_2:38223395-38223414 | Msa0769630:intron | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | + | chr5_2:38223421-38223440 | None:intergenic | 40.0% |
| TCTTCTTTCATCAGCTCCTA+TGG | + | chr5_2:38223519-38223538 | None:intergenic | 40.0% | |
| ! | ATAGAGCGCTTCATAACTGA+TGG | + | chr5_2:38222628-38222647 | None:intergenic | 40.0% |
| TCTATCAATCCCAAGTTCTC+TGG | - | chr5_2:38222643-38222662 | Msa0769630:CDS | 40.0% | |
| GTAAAAGGTTCTCTGTTTCC+GGG | + | chr5_2:38222698-38222717 | None:intergenic | 40.0% | |
| GGTAAAAGGTTCTCTGTTTC+CGG | + | chr5_2:38222699-38222718 | None:intergenic | 40.0% | |
| TGTTTAAAGGAGGCTTCGAA+TGG | - | chr5_2:38222844-38222863 | Msa0769630:intron | 40.0% | |
| AGAAACTTGCCTCAGAAGAA+AGG | + | chr5_2:38223027-38223046 | None:intergenic | 40.0% | |
| ATCCTCTTGAGCGCTATTTA+AGG | + | chr5_2:38223273-38223292 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | - | chr5_2:38223323-38223342 | Msa0769630:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | - | chr5_2:38223367-38223386 | Msa0769630:intron | 40.0% | |
| TAAGGCCATCACAACTGATA+TGG | - | chr5_2:38223394-38223413 | Msa0769630:intron | 40.0% | |
| AAGGCCATCACAACTGATAT+GGG | - | chr5_2:38223395-38223414 | Msa0769630:intron | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | + | chr5_2:38223421-38223440 | None:intergenic | 40.0% |
| TCTTCTTTCATCAGCTCCTA+TGG | + | chr5_2:38223519-38223538 | None:intergenic | 40.0% | |
| AACCAAACCAAACCAAACGC+AGG | + | chr5_2:38222457-38222476 | None:intergenic | 45.0% | |
| !! | GGTTTGGTTTGGTTTGCTCA+AGG | - | chr5_2:38222463-38222482 | Msa0769630:CDS | 45.0% |
| CAGCCTGACGTAGGTATTTA+TGG | + | chr5_2:38222720-38222739 | None:intergenic | 45.0% | |
| TGGAGGGTTAAAGACATCCA+TGG | + | chr5_2:38222743-38222762 | None:intergenic | 45.0% | |
| GATGTCTTTAACCCTCCAGA+TGG | - | chr5_2:38222745-38222764 | Msa0769630:CDS | 45.0% | |
| TTTAACCCTCCAGATGGTGA+TGG | - | chr5_2:38222751-38222770 | Msa0769630:CDS | 45.0% | |
| !! | TTTTCAGGCTGTCTTTCGAG+AGG | - | chr5_2:38222810-38222829 | Msa0769630:CDS | 45.0% |
| AACCTTCAACTTGCCGCTAA+AGG | - | chr5_2:38222867-38222886 | Msa0769630:intron | 45.0% | |
| ACCTTCAACTTGCCGCTAAA+GGG | - | chr5_2:38222868-38222887 | Msa0769630:intron | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | - | chr5_2:38223001-38223020 | Msa0769630:intron | 45.0% |
| ! | CATTGATGGCCTTTCTTCTG+AGG | - | chr5_2:38223015-38223034 | Msa0769630:intron | 45.0% |
| !! | TCTTCTGAGGCAAGTTTCTC+TGG | - | chr5_2:38223028-38223047 | Msa0769630:intron | 45.0% |
| TGCCTTAAATAGCGCTCAAG+AGG | - | chr5_2:38223268-38223287 | Msa0769630:CDS | 45.0% | |
| GGAAGAGTTGGATGCTGATA+TGG | - | chr5_2:38223322-38223341 | Msa0769630:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | + | chr5_2:38223349-38223368 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | - | chr5_2:38223348-38223367 | Msa0769630:intron | 45.0% | |
| GAATGAGATGGAGGCTGATA+AGG | - | chr5_2:38223376-38223395 | Msa0769630:intron | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | + | chr5_2:38223402-38223421 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | - | chr5_2:38223401-38223420 | Msa0769630:intron | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | - | chr5_2:38223457-38223476 | Msa0769630:intron | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | - | chr5_2:38223460-38223479 | Msa0769630:intron | 45.0% |
| TTTCATCAGCTCCTATGGCT+CGG | + | chr5_2:38223514-38223533 | None:intergenic | 45.0% | |
| AACCAAACCAAACCAAACGC+AGG | + | chr5_2:38222457-38222476 | None:intergenic | 45.0% | |
| !! | GGTTTGGTTTGGTTTGCTCA+AGG | - | chr5_2:38222463-38222482 | Msa0769630:CDS | 45.0% |
| CAGCCTGACGTAGGTATTTA+TGG | + | chr5_2:38222720-38222739 | None:intergenic | 45.0% | |
| TGGAGGGTTAAAGACATCCA+TGG | + | chr5_2:38222743-38222762 | None:intergenic | 45.0% | |
| GATGTCTTTAACCCTCCAGA+TGG | - | chr5_2:38222745-38222764 | Msa0769630:CDS | 45.0% | |
| TTTAACCCTCCAGATGGTGA+TGG | - | chr5_2:38222751-38222770 | Msa0769630:CDS | 45.0% | |
| !! | TTTTCAGGCTGTCTTTCGAG+AGG | - | chr5_2:38222810-38222829 | Msa0769630:CDS | 45.0% |
| AACCTTCAACTTGCCGCTAA+AGG | - | chr5_2:38222867-38222886 | Msa0769630:intron | 45.0% | |
| ACCTTCAACTTGCCGCTAAA+GGG | - | chr5_2:38222868-38222887 | Msa0769630:intron | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | - | chr5_2:38223001-38223020 | Msa0769630:intron | 45.0% |
| ! | CATTGATGGCCTTTCTTCTG+AGG | - | chr5_2:38223015-38223034 | Msa0769630:intron | 45.0% |
| !! | TCTTCTGAGGCAAGTTTCTC+TGG | - | chr5_2:38223028-38223047 | Msa0769630:intron | 45.0% |
| TGCCTTAAATAGCGCTCAAG+AGG | - | chr5_2:38223268-38223287 | Msa0769630:CDS | 45.0% | |
| GGAAGAGTTGGATGCTGATA+TGG | - | chr5_2:38223322-38223341 | Msa0769630:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | + | chr5_2:38223349-38223368 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | - | chr5_2:38223348-38223367 | Msa0769630:intron | 45.0% | |
| GAATGAGATGGAGGCTGATA+AGG | - | chr5_2:38223376-38223395 | Msa0769630:intron | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | + | chr5_2:38223402-38223421 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | - | chr5_2:38223401-38223420 | Msa0769630:intron | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | - | chr5_2:38223457-38223476 | Msa0769630:intron | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | - | chr5_2:38223460-38223479 | Msa0769630:intron | 45.0% |
| TTTCATCAGCTCCTATGGCT+CGG | + | chr5_2:38223514-38223533 | None:intergenic | 45.0% | |
| !! | GTCCTGCGTTTGGTTTGGTT+TGG | - | chr5_2:38222452-38222471 | Msa0769630:CDS | 50.0% |
| TCAGGACCTCTGTAACGCAT+GGG | + | chr5_2:38222670-38222689 | None:intergenic | 50.0% | |
| ATCAGGACCTCTGTAACGCA+TGG | + | chr5_2:38222671-38222690 | None:intergenic | 50.0% | |
| ! | ACAGAGGTCCTGATTTGACC+CGG | - | chr5_2:38222677-38222696 | Msa0769630:CDS | 50.0% |
| CTCTGTTTCCGGGTCAAATC+AGG | + | chr5_2:38222688-38222707 | None:intergenic | 50.0% | |
| ! | ACCCTTTAGCGGCAAGTTGA+AGG | + | chr5_2:38222872-38222891 | None:intergenic | 50.0% |
| CCTCTTCTTTCATCAGCTCC+TGG | + | chr5_2:38223350-38223369 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | - | chr5_2:38223347-38223366 | Msa0769630:intron | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | - | chr5_2:38223445-38223464 | Msa0769630:intron | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | - | chr5_2:38223468-38223487 | Msa0769630:intron | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | - | chr5_2:38223469-38223488 | Msa0769630:intron | 50.0% |
| !! | GTCCTGCGTTTGGTTTGGTT+TGG | - | chr5_2:38222452-38222471 | Msa0769630:CDS | 50.0% |
| TCAGGACCTCTGTAACGCAT+GGG | + | chr5_2:38222670-38222689 | None:intergenic | 50.0% | |
| ATCAGGACCTCTGTAACGCA+TGG | + | chr5_2:38222671-38222690 | None:intergenic | 50.0% | |
| ! | ACAGAGGTCCTGATTTGACC+CGG | - | chr5_2:38222677-38222696 | Msa0769630:CDS | 50.0% |
| CTCTGTTTCCGGGTCAAATC+AGG | + | chr5_2:38222688-38222707 | None:intergenic | 50.0% | |
| ! | ACCCTTTAGCGGCAAGTTGA+AGG | + | chr5_2:38222872-38222891 | None:intergenic | 50.0% |
| CCTCTTCTTTCATCAGCTCC+TGG | + | chr5_2:38223350-38223369 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | - | chr5_2:38223347-38223366 | Msa0769630:intron | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | - | chr5_2:38223445-38223464 | Msa0769630:intron | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | - | chr5_2:38223468-38223487 | Msa0769630:intron | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | - | chr5_2:38223469-38223488 | Msa0769630:intron | 50.0% |
| AAGAAGACGCGATGAGCGAG+TGG | + | chr5_2:38222421-38222440 | None:intergenic | 55.0% | |
| AACCAAACGCAGGACGACGT+GGG | + | chr5_2:38222447-38222466 | None:intergenic | 55.0% | |
| AAACCAAACGCAGGACGACG+TGG | + | chr5_2:38222448-38222467 | None:intergenic | 55.0% | |
| ACGTCGTCCTGCGTTTGGTT+TGG | - | chr5_2:38222447-38222466 | Msa0769630:CDS | 55.0% | |
| CAGGACCTCTGTAACGCATG+GGG | + | chr5_2:38222669-38222688 | None:intergenic | 55.0% | |
| ATACCTACGTCAGGCTGCCA+TGG | - | chr5_2:38222723-38222742 | Msa0769630:CDS | 55.0% | |
| CAGCACCATCACCATCTGGA+GGG | + | chr5_2:38222759-38222778 | None:intergenic | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | - | chr5_2:38223329-38223348 | Msa0769630:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+AGG | - | chr5_2:38223500-38223519 | Msa0769630:CDS | 55.0% | |
| AAGAAGACGCGATGAGCGAG+TGG | + | chr5_2:38222421-38222440 | None:intergenic | 55.0% | |
| AACCAAACGCAGGACGACGT+GGG | + | chr5_2:38222447-38222466 | None:intergenic | 55.0% | |
| AAACCAAACGCAGGACGACG+TGG | + | chr5_2:38222448-38222467 | None:intergenic | 55.0% | |
| ACGTCGTCCTGCGTTTGGTT+TGG | - | chr5_2:38222447-38222466 | Msa0769630:CDS | 55.0% | |
| CAGGACCTCTGTAACGCATG+GGG | + | chr5_2:38222669-38222688 | None:intergenic | 55.0% | |
| ATACCTACGTCAGGCTGCCA+TGG | - | chr5_2:38222723-38222742 | Msa0769630:CDS | 55.0% | |
| CAGCACCATCACCATCTGGA+GGG | + | chr5_2:38222759-38222778 | None:intergenic | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | - | chr5_2:38223329-38223348 | Msa0769630:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+AGG | - | chr5_2:38223500-38223519 | Msa0769630:CDS | 55.0% | |
| TTCCCACGTCGTCCTGCGTT+TGG | - | chr5_2:38222442-38222461 | Msa0769630:CDS | 60.0% | |
| CGCATGGGGCCAGAGAACTT+GGG | + | chr5_2:38222655-38222674 | None:intergenic | 60.0% | |
| ACGCATGGGGCCAGAGAACT+TGG | + | chr5_2:38222656-38222675 | None:intergenic | 60.0% | |
| TCTGGCCCCATGCGTTACAG+AGG | - | chr5_2:38222661-38222680 | Msa0769630:CDS | 60.0% | |
| CATCCATGGCAGCCTGACGT+AGG | + | chr5_2:38222729-38222748 | None:intergenic | 60.0% | |
| GCAGCACCATCACCATCTGG+AGG | + | chr5_2:38222760-38222779 | None:intergenic | 60.0% | |
| GCAGCAGCACCATCACCATC+TGG | + | chr5_2:38222763-38222782 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | - | chr5_2:38223475-38223494 | Msa0769630:intron | 60.0% | |
| TTCCCACGTCGTCCTGCGTT+TGG | - | chr5_2:38222442-38222461 | Msa0769630:CDS | 60.0% | |
| CGCATGGGGCCAGAGAACTT+GGG | + | chr5_2:38222655-38222674 | None:intergenic | 60.0% | |
| ACGCATGGGGCCAGAGAACT+TGG | + | chr5_2:38222656-38222675 | None:intergenic | 60.0% | |
| TCTGGCCCCATGCGTTACAG+AGG | - | chr5_2:38222661-38222680 | Msa0769630:CDS | 60.0% | |
| CATCCATGGCAGCCTGACGT+AGG | + | chr5_2:38222729-38222748 | None:intergenic | 60.0% | |
| GCAGCACCATCACCATCTGG+AGG | + | chr5_2:38222760-38222779 | None:intergenic | 60.0% | |
| GCAGCAGCACCATCACCATC+TGG | + | chr5_2:38222763-38222782 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | - | chr5_2:38223475-38223494 | Msa0769630:intron | 60.0% | |
| GGATTGACACGGCGCCCTTC+AGG | + | chr5_2:38222607-38222626 | None:intergenic | 65.0% | |
| GGATTGACACGGCGCCCTTC+AGG | + | chr5_2:38222607-38222626 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 38222376 | 38223589 | 38222376 | ID=Msa0769630;Name=Msa0769630 |
| chr5_2 | mRNA | 38222376 | 38223589 | 38222376 | ID=Msa0769630-mRNA-1;Parent=Msa0769630;Name=Msa0769630-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.2|0.75|0.6|5|0|309 |
| chr5_2 | exon | 38223481 | 38223589 | 38223481 | ID=Msa0769630-mRNA-1:exon:12541;Parent=Msa0769630-mRNA-1 |
| chr5_2 | exon | 38223161 | 38223354 | 38223161 | ID=Msa0769630-mRNA-1:exon:12540;Parent=Msa0769630-mRNA-1 |
| chr5_2 | exon | 38223076 | 38223148 | 38223076 | ID=Msa0769630-mRNA-1:exon:12539;Parent=Msa0769630-mRNA-1 |
| chr5_2 | exon | 38222902 | 38222978 | 38222902 | ID=Msa0769630-mRNA-1:exon:12538;Parent=Msa0769630-mRNA-1 |
| chr5_2 | exon | 38222376 | 38222852 | 38222376 | ID=Msa0769630-mRNA-1:exon:12537;Parent=Msa0769630-mRNA-1 |
| chr5_2 | CDS | 38223481 | 38223589 | 38223481 | ID=Msa0769630-mRNA-1:cds;Parent=Msa0769630-mRNA-1 |
| chr5_2 | CDS | 38223161 | 38223354 | 38223161 | ID=Msa0769630-mRNA-1:cds;Parent=Msa0769630-mRNA-1 |
| chr5_2 | CDS | 38223076 | 38223148 | 38223076 | ID=Msa0769630-mRNA-1:cds;Parent=Msa0769630-mRNA-1 |
| chr5_2 | CDS | 38222902 | 38222978 | 38222902 | ID=Msa0769630-mRNA-1:cds;Parent=Msa0769630-mRNA-1 |
| chr5_2 | CDS | 38222376 | 38222852 | 38222376 | ID=Msa0769630-mRNA-1:cds;Parent=Msa0769630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
