Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800030 | RHN39211.1 | 46.207 | 145 | 54 | 3 | 4 | 144 | 5 | 129 | 2.02e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800030 | A0A396GG85 | 46.207 | 145 | 54 | 3 | 4 | 144 | 5 | 129 | 9.66e-18 | 83.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0800030 | 0.804051 | 2.600884e-49 | -8.615850e-47 |
| Msa0701010 | Msa0800030 | 0.805494 | 1.299321e-49 | -8.615850e-47 |
| Msa0769630 | Msa0800030 | 0.842856 | 2.002629e-58 | -8.615850e-47 |
| Msa0784380 | Msa0800030 | 0.801754 | 7.756220e-49 | -8.615850e-47 |
| Msa0800030 | Msa0820850 | 0.807892 | 4.047905e-50 | -8.615850e-47 |
| Msa0800030 | Msa0861130 | 0.807115 | 5.918527e-50 | -8.615850e-47 |
| Msa0800030 | Msa0936300 | 0.806153 | 9.443721e-50 | -8.615850e-47 |
| Msa0800030 | Msa0973100 | 0.808204 | 3.474606e-50 | -8.615850e-47 |
| Msa0800030 | Msa1014540 | 0.808148 | 3.571265e-50 | -8.615850e-47 |
| Msa0800030 | Msa1104090 | 0.801720 | 7.882141e-49 | -8.615850e-47 |
| Msa0800030 | Msa1238930 | 0.801905 | 7.222126e-49 | -8.615850e-47 |
| Msa0800030 | Msa1277660 | 0.809272 | 2.054043e-50 | -8.615850e-47 |
| Msa0800030 | Msa1284680 | 0.800382 | 1.479800e-48 | -8.615850e-47 |
| Msa0171540 | Msa0800030 | 0.803198 | 3.908067e-49 | -8.615850e-47 |
| Msa0180500 | Msa0800030 | 0.806672 | 7.341199e-50 | -8.615850e-47 |
| Msa0197660 | Msa0800030 | 0.802184 | 6.328321e-49 | -8.615850e-47 |
| Msa0479340 | Msa0800030 | 0.808484 | 3.028324e-50 | -8.615850e-47 |
| Msa0275000 | Msa0800030 | 0.812747 | 3.628844e-51 | -8.615850e-47 |
| Msa0321310 | Msa0800030 | 0.827415 | 1.584217e-54 | -8.615850e-47 |
| Msa0330340 | Msa0800030 | 0.803580 | 3.256985e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800030 | MtrunA17_Chr8g0341401 | 46.207 | 145 | 54 | 3 | 4 | 144 | 5 | 129 | 1.86e-21 | 83.6 |
| Msa0800030 | MtrunA17_Chr8g0341371 | 52.679 | 112 | 36 | 5 | 44 | 143 | 93 | 199 | 6.17e-19 | 79.7 |
| Msa0800030 | MtrunA17_Chr8g0356721 | 42.236 | 161 | 72 | 6 | 1 | 143 | 35 | 192 | 1.24e-18 | 78.6 |
| Msa0800030 | MtrunA17_Chr8g0356751 | 42.236 | 161 | 72 | 6 | 1 | 143 | 35 | 192 | 1.24e-18 | 78.6 |
| Msa0800030 | MtrunA17_Chr8g0358441 | 42.857 | 161 | 71 | 6 | 1 | 143 | 93 | 250 | 1.32e-18 | 79.3 |
| Msa0800030 | MtrunA17_Chr8g0356791 | 44.138 | 145 | 57 | 3 | 4 | 144 | 38 | 162 | 1.43e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGCTTCTTTCTCTTTCTT+TGG | 0.142893 | 5_3:-13429344 | None:intergenic |
| TTGTATTGCTTTCAGTTATT+TGG | 0.167940 | 5_3:+13429014 | Msa0800030:CDS |
| ATCCTCTTGAGCGCTATTTA+AGG | 0.187026 | 5_3:-13429055 | None:intergenic |
| GGAAGAGTTGGATGCTGATA+TGG | 0.261335 | 5_3:+13429107 | Msa0800030:CDS |
| CCTCTTCTTTCATCAGCTCC+TGG | 0.271580 | 5_3:-13429132 | None:intergenic |
| TTATTTGGAGACTTGTCTTT+TGG | 0.275995 | 5_3:+13429029 | Msa0800030:CDS |
| TAAGGCCATCACAACTGATA+TGG | 0.290060 | 5_3:+13429179 | Msa0800030:CDS |
| GTGCTTCTTTCTCTTTCTTT+GGG | 0.299866 | 5_3:-13429343 | None:intergenic |
| CTCTTCTTTCATCAGCTCCT+GGG | 0.315736 | 5_3:-13429131 | None:intergenic |
| AAGAGTTGGTGGAGGCTGAT+AGG | 0.362424 | 5_3:+13429253 | Msa0800030:CDS |
| GAGCATCTTGAAATTCTTCT+CGG | 0.376887 | 5_3:-13428975 | None:intergenic |
| TTCCTTCTTTCTCTTTCTCT+CGG | 0.405594 | 5_3:-13429232 | None:intergenic |
| TCTTCTTTCATCAGCTCCTA+TGG | 0.432107 | 5_3:-13429301 | None:intergenic |
| GAATGAGATGGAGGCTGATA+AGG | 0.433374 | 5_3:+13429161 | Msa0800030:CDS |
| AAAGAGAAAGAAGGAAGAGT+TGG | 0.456774 | 5_3:+13429239 | Msa0800030:CDS |
| GTCTTTAGCCTTACAAAAGA+AGG | 0.467568 | 5_3:+13429086 | Msa0800030:CDS |
| GAGAAAGAAGGAAGAGTTGG+TGG | 0.470031 | 5_3:+13429242 | Msa0800030:CDS |
| AAGGCCATCACAACTGATAT+GGG | 0.471581 | 5_3:+13429180 | Msa0800030:CDS |
| AGAGTTGGTGGAGGCTGATA+GGG | 0.498363 | 5_3:+13429254 | Msa0800030:CDS |
| TTTCATCAGCTCCTATGGCT+CGG | 0.502971 | 5_3:-13429296 | None:intergenic |
| AAAGAAGGAAGAGTTGGTGG+AGG | 0.503176 | 5_3:+13429245 | Msa0800030:CDS |
| TTGGATGCTGATATGGGCCC+AGG | 0.504712 | 5_3:+13429114 | Msa0800030:CDS |
| GAAGAGTTGGATGCTGATAT+GGG | 0.510628 | 5_3:+13429108 | Msa0800030:CDS |
| AAGAAGCTCAGCCGAGCCAT+AGG | 0.520622 | 5_3:+13429285 | Msa0800030:CDS |
| TTGGCCCATATCAGTTGTGA+TGG | 0.547379 | 5_3:-13429184 | None:intergenic |
| CTTACAAAAGAAGGAAGAGT+TGG | 0.558318 | 5_3:+13429095 | Msa0800030:CDS |
| AAGAATTTCAAGATGCTCGA+AGG | 0.559260 | 5_3:+13428980 | Msa0800030:CDS |
| GGTGGAGGCTGATAGGGCTA+TGG | 0.577374 | 5_3:+13429260 | Msa0800030:CDS |
| TGCCTTAAATAGCGCTCAAG+AGG | 0.593957 | 5_3:+13429053 | Msa0800030:CDS |
| GGCCGAGAGAAAGAGAAAGA+AGG | 0.595246 | 5_3:+13429230 | Msa0800030:CDS |
| CCAGGAGCTGATGAAAGAAG+AGG | 0.599571 | 5_3:+13429132 | Msa0800030:CDS |
| ATCACAACTGATATGGGCCA+AGG | 0.613279 | 5_3:+13429186 | Msa0800030:CDS |
| CAGGAGCTGATGAAAGAAGA+GGG | 0.617975 | 5_3:+13429133 | Msa0800030:CDS |
| AGCTGTTGAAAAGAATGAGA+TGG | 0.645663 | 5_3:+13429209 | Msa0800030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGATAAAATGAAAAAG+AGG | - | chr5_3:13428691-13428710 | None:intergenic | 15.0% |
| !! | ATAAAGATAAAATGAAAAAG+AGG | - | chr5_3:13428691-13428710 | None:intergenic | 15.0% |
| !! | ATGAATGAATGAATGAATTT+CGG | - | chr5_3:13428178-13428197 | None:intergenic | 20.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | - | chr5_3:13428279-13428298 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | - | chr5_3:13428280-13428299 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+AGG | + | chr5_3:13428568-13428587 | Msa0800030:intron | 20.0% |
| !!! | TCATTTTATCTTTATTGATC+AGG | + | chr5_3:13428696-13428715 | Msa0800030:intron | 20.0% |
| !!! | CATTTTATCTTTATTGATCA+GGG | + | chr5_3:13428697-13428716 | Msa0800030:intron | 20.0% |
| !! | ATGAATGAATGAATGAATTT+CGG | - | chr5_3:13428178-13428197 | None:intergenic | 20.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | - | chr5_3:13428279-13428298 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | - | chr5_3:13428280-13428299 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+AGG | + | chr5_3:13428568-13428587 | Msa0800030:intron | 20.0% |
| !!! | TCATTTTATCTTTATTGATC+AGG | + | chr5_3:13428696-13428715 | Msa0800030:intron | 20.0% |
| !!! | CATTTTATCTTTATTGATCA+GGG | + | chr5_3:13428697-13428716 | Msa0800030:intron | 20.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | - | chr5_3:13428375-13428394 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | + | chr5_3:13428374-13428393 | Msa0800030:intron | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | + | chr5_3:13428375-13428394 | Msa0800030:intron | 25.0% |
| ! | TTGTATTGCTTTCAGTTATT+TGG | + | chr5_3:13429014-13429033 | Msa0800030:CDS | 25.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | - | chr5_3:13428375-13428394 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | + | chr5_3:13428374-13428393 | Msa0800030:intron | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | + | chr5_3:13428375-13428394 | Msa0800030:intron | 25.0% |
| ! | TTGTATTGCTTTCAGTTATT+TGG | + | chr5_3:13429014-13429033 | Msa0800030:CDS | 25.0% |
| TCATAATATCTTCTGTGAAC+TGG | + | chr5_3:13428306-13428325 | Msa0800030:intron | 30.0% | |
| CATAATATCTTCTGTGAACT+GGG | + | chr5_3:13428307-13428326 | Msa0800030:intron | 30.0% | |
| ATAATATCTTCTGTGAACTG+GGG | + | chr5_3:13428308-13428327 | Msa0800030:intron | 30.0% | |
| ! | AAATAAGAAAGCATAGGGTA+AGG | - | chr5_3:13428349-13428368 | None:intergenic | 30.0% |
| ACGTAGGTATTTATGGTAAA+AGG | - | chr5_3:13428498-13428517 | None:intergenic | 30.0% | |
| !!! | ACAATTGAAGGTTACTTTTC+AGG | + | chr5_3:13428580-13428599 | Msa0800030:intron | 30.0% |
| TATACTCAAGTGTTTAAAGG+AGG | + | chr5_3:13428619-13428638 | Msa0800030:intron | 30.0% | |
| TTATCAGACAAAACTGAACA+TGG | + | chr5_3:13428765-13428784 | Msa0800030:intron | 30.0% | |
| ! | TTATTTGGAGACTTGTCTTT+TGG | + | chr5_3:13429029-13429048 | Msa0800030:CDS | 30.0% |
| TCATAATATCTTCTGTGAAC+TGG | + | chr5_3:13428306-13428325 | Msa0800030:intron | 30.0% | |
| CATAATATCTTCTGTGAACT+GGG | + | chr5_3:13428307-13428326 | Msa0800030:intron | 30.0% | |
| ATAATATCTTCTGTGAACTG+GGG | + | chr5_3:13428308-13428327 | Msa0800030:intron | 30.0% | |
| ! | AAATAAGAAAGCATAGGGTA+AGG | - | chr5_3:13428349-13428368 | None:intergenic | 30.0% |
| ACGTAGGTATTTATGGTAAA+AGG | - | chr5_3:13428498-13428517 | None:intergenic | 30.0% | |
| !!! | ACAATTGAAGGTTACTTTTC+AGG | + | chr5_3:13428580-13428599 | Msa0800030:intron | 30.0% |
| TATACTCAAGTGTTTAAAGG+AGG | + | chr5_3:13428619-13428638 | Msa0800030:intron | 30.0% | |
| TTATCAGACAAAACTGAACA+TGG | + | chr5_3:13428765-13428784 | Msa0800030:intron | 30.0% | |
| ! | TTATTTGGAGACTTGTCTTT+TGG | + | chr5_3:13429029-13429048 | Msa0800030:CDS | 30.0% |
| ! | GGAGCAAATAAGAAAGCATA+GGG | - | chr5_3:13428354-13428373 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | - | chr5_3:13428355-13428374 | None:intergenic | 35.0% |
| !! | TCATAACTGATGGATTGACA+CGG | - | chr5_3:13428403-13428422 | None:intergenic | 35.0% |
| TTACCATAAATACCTACGTC+AGG | + | chr5_3:13428499-13428518 | Msa0800030:intron | 35.0% | |
| GGCTATACTCAAGTGTTTAA+AGG | + | chr5_3:13428616-13428635 | Msa0800030:intron | 35.0% | |
| ! | TGATTTGAGTTACCCTTTAG+CGG | - | chr5_3:13428668-13428687 | None:intergenic | 35.0% |
| !! | TCAGGGCTTTATTCAATTCT+TGG | + | chr5_3:13428714-13428733 | Msa0800030:intron | 35.0% |
| ATATCAATCTCTAAACACGC+AGG | + | chr5_3:13428927-13428946 | Msa0800030:intron | 35.0% | |
| !! | AGCAAGCTGTAACTTTTTCT+TGG | - | chr5_3:13428953-13428972 | None:intergenic | 35.0% |
| GAGCATCTTGAAATTCTTCT+CGG | - | chr5_3:13428978-13428997 | None:intergenic | 35.0% | |
| AAGAATTTCAAGATGCTCGA+AGG | + | chr5_3:13428980-13428999 | Msa0800030:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | + | chr5_3:13429086-13429105 | Msa0800030:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | - | chr5_3:13429097-13429116 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | + | chr5_3:13429095-13429114 | Msa0800030:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | + | chr5_3:13429149-13429168 | Msa0800030:CDS | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | + | chr5_3:13429209-13429228 | Msa0800030:CDS | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | - | chr5_3:13429235-13429254 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | + | chr5_3:13429239-13429258 | Msa0800030:CDS | 35.0% | |
| GTGCTTCTTTCTCTTTCTTT+GGG | - | chr5_3:13429346-13429365 | None:intergenic | 35.0% | |
| TGTGCTTCTTTCTCTTTCTT+TGG | - | chr5_3:13429347-13429366 | None:intergenic | 35.0% | |
| ! | GGAGCAAATAAGAAAGCATA+GGG | - | chr5_3:13428354-13428373 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | - | chr5_3:13428355-13428374 | None:intergenic | 35.0% |
| !! | TCATAACTGATGGATTGACA+CGG | - | chr5_3:13428403-13428422 | None:intergenic | 35.0% |
| TTACCATAAATACCTACGTC+AGG | + | chr5_3:13428499-13428518 | Msa0800030:intron | 35.0% | |
| GGCTATACTCAAGTGTTTAA+AGG | + | chr5_3:13428616-13428635 | Msa0800030:intron | 35.0% | |
| ! | TGATTTGAGTTACCCTTTAG+CGG | - | chr5_3:13428668-13428687 | None:intergenic | 35.0% |
| !! | TCAGGGCTTTATTCAATTCT+TGG | + | chr5_3:13428714-13428733 | Msa0800030:intron | 35.0% |
| ATATCAATCTCTAAACACGC+AGG | + | chr5_3:13428927-13428946 | Msa0800030:intron | 35.0% | |
| !! | AGCAAGCTGTAACTTTTTCT+TGG | - | chr5_3:13428953-13428972 | None:intergenic | 35.0% |
| GAGCATCTTGAAATTCTTCT+CGG | - | chr5_3:13428978-13428997 | None:intergenic | 35.0% | |
| AAGAATTTCAAGATGCTCGA+AGG | + | chr5_3:13428980-13428999 | Msa0800030:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | + | chr5_3:13429086-13429105 | Msa0800030:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | - | chr5_3:13429097-13429116 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | + | chr5_3:13429095-13429114 | Msa0800030:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | + | chr5_3:13429149-13429168 | Msa0800030:CDS | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | + | chr5_3:13429209-13429228 | Msa0800030:CDS | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | - | chr5_3:13429235-13429254 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | + | chr5_3:13429239-13429258 | Msa0800030:CDS | 35.0% | |
| GTGCTTCTTTCTCTTTCTTT+GGG | - | chr5_3:13429346-13429365 | None:intergenic | 35.0% | |
| TGTGCTTCTTTCTCTTTCTT+TGG | - | chr5_3:13429347-13429366 | None:intergenic | 35.0% | |
| ! | ATAGAGCGCTTCATAACTGA+TGG | - | chr5_3:13428413-13428432 | None:intergenic | 40.0% |
| TCTATCAATCCCAAGTTCTC+TGG | + | chr5_3:13428428-13428447 | Msa0800030:intron | 40.0% | |
| GTAAAAGGTTCTCTGTTTCC+GGG | - | chr5_3:13428483-13428502 | None:intergenic | 40.0% | |
| GGTAAAAGGTTCTCTGTTTC+CGG | - | chr5_3:13428484-13428503 | None:intergenic | 40.0% | |
| TGTTTAAAGGAGGCTTCGAA+TGG | + | chr5_3:13428629-13428648 | Msa0800030:intron | 40.0% | |
| AGAAACTTGCCTCAGAAGAA+AGG | - | chr5_3:13428812-13428831 | None:intergenic | 40.0% | |
| ATCCTCTTGAGCGCTATTTA+AGG | - | chr5_3:13429058-13429077 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | + | chr5_3:13429108-13429127 | Msa0800030:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | + | chr5_3:13429152-13429171 | Msa0800030:CDS | 40.0% | |
| TAAGGCCATCACAACTGATA+TGG | + | chr5_3:13429179-13429198 | Msa0800030:CDS | 40.0% | |
| AAGGCCATCACAACTGATAT+GGG | + | chr5_3:13429180-13429199 | Msa0800030:CDS | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | - | chr5_3:13429206-13429225 | None:intergenic | 40.0% |
| TCTTCTTTCATCAGCTCCTA+TGG | - | chr5_3:13429304-13429323 | None:intergenic | 40.0% | |
| ! | ATAGAGCGCTTCATAACTGA+TGG | - | chr5_3:13428413-13428432 | None:intergenic | 40.0% |
| TCTATCAATCCCAAGTTCTC+TGG | + | chr5_3:13428428-13428447 | Msa0800030:intron | 40.0% | |
| GTAAAAGGTTCTCTGTTTCC+GGG | - | chr5_3:13428483-13428502 | None:intergenic | 40.0% | |
| GGTAAAAGGTTCTCTGTTTC+CGG | - | chr5_3:13428484-13428503 | None:intergenic | 40.0% | |
| TGTTTAAAGGAGGCTTCGAA+TGG | + | chr5_3:13428629-13428648 | Msa0800030:intron | 40.0% | |
| AGAAACTTGCCTCAGAAGAA+AGG | - | chr5_3:13428812-13428831 | None:intergenic | 40.0% | |
| ATCCTCTTGAGCGCTATTTA+AGG | - | chr5_3:13429058-13429077 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | + | chr5_3:13429108-13429127 | Msa0800030:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | + | chr5_3:13429152-13429171 | Msa0800030:CDS | 40.0% | |
| TAAGGCCATCACAACTGATA+TGG | + | chr5_3:13429179-13429198 | Msa0800030:CDS | 40.0% | |
| AAGGCCATCACAACTGATAT+GGG | + | chr5_3:13429180-13429199 | Msa0800030:CDS | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | - | chr5_3:13429206-13429225 | None:intergenic | 40.0% |
| TCTTCTTTCATCAGCTCCTA+TGG | - | chr5_3:13429304-13429323 | None:intergenic | 40.0% | |
| AACCAAACCAAACCAAACGC+AGG | - | chr5_3:13428242-13428261 | None:intergenic | 45.0% | |
| !! | GGTTTGGTTTGGTTTGCTCA+AGG | + | chr5_3:13428248-13428267 | Msa0800030:intron | 45.0% |
| CAGCCTGACGTAGGTATTTA+TGG | - | chr5_3:13428505-13428524 | None:intergenic | 45.0% | |
| TGGAGGGTTAAAGACATCCA+TGG | - | chr5_3:13428528-13428547 | None:intergenic | 45.0% | |
| GATGTCTTTAACCCTCCAGA+TGG | + | chr5_3:13428530-13428549 | Msa0800030:intron | 45.0% | |
| TTTAACCCTCCAGATGGTGA+TGG | + | chr5_3:13428536-13428555 | Msa0800030:intron | 45.0% | |
| !! | TTTTCAGGCTGTCTTTCGAG+AGG | + | chr5_3:13428595-13428614 | Msa0800030:intron | 45.0% |
| AACCTTCAACTTGCCGCTAA+AGG | + | chr5_3:13428652-13428671 | Msa0800030:intron | 45.0% | |
| ACCTTCAACTTGCCGCTAAA+GGG | + | chr5_3:13428653-13428672 | Msa0800030:intron | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | + | chr5_3:13428786-13428805 | Msa0800030:intron | 45.0% |
| ! | CATTGATGGCCTTTCTTCTG+AGG | + | chr5_3:13428800-13428819 | Msa0800030:intron | 45.0% |
| !! | TCTTCTGAGGCAAGTTTCTC+TGG | + | chr5_3:13428813-13428832 | Msa0800030:intron | 45.0% |
| TGCCTTAAATAGCGCTCAAG+AGG | + | chr5_3:13429053-13429072 | Msa0800030:CDS | 45.0% | |
| GGAAGAGTTGGATGCTGATA+TGG | + | chr5_3:13429107-13429126 | Msa0800030:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | - | chr5_3:13429134-13429153 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | + | chr5_3:13429133-13429152 | Msa0800030:CDS | 45.0% | |
| GAATGAGATGGAGGCTGATA+AGG | + | chr5_3:13429161-13429180 | Msa0800030:CDS | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | - | chr5_3:13429187-13429206 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | + | chr5_3:13429186-13429205 | Msa0800030:CDS | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | + | chr5_3:13429242-13429261 | Msa0800030:CDS | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | + | chr5_3:13429245-13429264 | Msa0800030:CDS | 45.0% |
| TTTCATCAGCTCCTATGGCT+CGG | - | chr5_3:13429299-13429318 | None:intergenic | 45.0% | |
| AACCAAACCAAACCAAACGC+AGG | - | chr5_3:13428242-13428261 | None:intergenic | 45.0% | |
| !! | GGTTTGGTTTGGTTTGCTCA+AGG | + | chr5_3:13428248-13428267 | Msa0800030:intron | 45.0% |
| CAGCCTGACGTAGGTATTTA+TGG | - | chr5_3:13428505-13428524 | None:intergenic | 45.0% | |
| TGGAGGGTTAAAGACATCCA+TGG | - | chr5_3:13428528-13428547 | None:intergenic | 45.0% | |
| GATGTCTTTAACCCTCCAGA+TGG | + | chr5_3:13428530-13428549 | Msa0800030:intron | 45.0% | |
| TTTAACCCTCCAGATGGTGA+TGG | + | chr5_3:13428536-13428555 | Msa0800030:intron | 45.0% | |
| !! | TTTTCAGGCTGTCTTTCGAG+AGG | + | chr5_3:13428595-13428614 | Msa0800030:intron | 45.0% |
| AACCTTCAACTTGCCGCTAA+AGG | + | chr5_3:13428652-13428671 | Msa0800030:intron | 45.0% | |
| ACCTTCAACTTGCCGCTAAA+GGG | + | chr5_3:13428653-13428672 | Msa0800030:intron | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | + | chr5_3:13428786-13428805 | Msa0800030:intron | 45.0% |
| ! | CATTGATGGCCTTTCTTCTG+AGG | + | chr5_3:13428800-13428819 | Msa0800030:intron | 45.0% |
| !! | TCTTCTGAGGCAAGTTTCTC+TGG | + | chr5_3:13428813-13428832 | Msa0800030:intron | 45.0% |
| TGCCTTAAATAGCGCTCAAG+AGG | + | chr5_3:13429053-13429072 | Msa0800030:CDS | 45.0% | |
| GGAAGAGTTGGATGCTGATA+TGG | + | chr5_3:13429107-13429126 | Msa0800030:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | - | chr5_3:13429134-13429153 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | + | chr5_3:13429133-13429152 | Msa0800030:CDS | 45.0% | |
| GAATGAGATGGAGGCTGATA+AGG | + | chr5_3:13429161-13429180 | Msa0800030:CDS | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | - | chr5_3:13429187-13429206 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | + | chr5_3:13429186-13429205 | Msa0800030:CDS | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | + | chr5_3:13429242-13429261 | Msa0800030:CDS | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | + | chr5_3:13429245-13429264 | Msa0800030:CDS | 45.0% |
| TTTCATCAGCTCCTATGGCT+CGG | - | chr5_3:13429299-13429318 | None:intergenic | 45.0% | |
| !! | GTCCTGCGTTTGGTTTGGTT+TGG | + | chr5_3:13428237-13428256 | Msa0800030:intron | 50.0% |
| TCAGGACCTCTGTAACGCAT+GGG | - | chr5_3:13428455-13428474 | None:intergenic | 50.0% | |
| ATCAGGACCTCTGTAACGCA+TGG | - | chr5_3:13428456-13428475 | None:intergenic | 50.0% | |
| ! | ACAGAGGTCCTGATTTGACC+CGG | + | chr5_3:13428462-13428481 | Msa0800030:intron | 50.0% |
| CTCTGTTTCCGGGTCAAATC+AGG | - | chr5_3:13428473-13428492 | None:intergenic | 50.0% | |
| ! | ACCCTTTAGCGGCAAGTTGA+AGG | - | chr5_3:13428657-13428676 | None:intergenic | 50.0% |
| CCTCTTCTTTCATCAGCTCC+TGG | - | chr5_3:13429135-13429154 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | + | chr5_3:13429132-13429151 | Msa0800030:CDS | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | + | chr5_3:13429230-13429249 | Msa0800030:CDS | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | + | chr5_3:13429253-13429272 | Msa0800030:CDS | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | + | chr5_3:13429254-13429273 | Msa0800030:CDS | 50.0% |
| !! | GTCCTGCGTTTGGTTTGGTT+TGG | + | chr5_3:13428237-13428256 | Msa0800030:intron | 50.0% |
| TCAGGACCTCTGTAACGCAT+GGG | - | chr5_3:13428455-13428474 | None:intergenic | 50.0% | |
| ATCAGGACCTCTGTAACGCA+TGG | - | chr5_3:13428456-13428475 | None:intergenic | 50.0% | |
| ! | ACAGAGGTCCTGATTTGACC+CGG | + | chr5_3:13428462-13428481 | Msa0800030:intron | 50.0% |
| CTCTGTTTCCGGGTCAAATC+AGG | - | chr5_3:13428473-13428492 | None:intergenic | 50.0% | |
| ! | ACCCTTTAGCGGCAAGTTGA+AGG | - | chr5_3:13428657-13428676 | None:intergenic | 50.0% |
| CCTCTTCTTTCATCAGCTCC+TGG | - | chr5_3:13429135-13429154 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | + | chr5_3:13429132-13429151 | Msa0800030:CDS | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | + | chr5_3:13429230-13429249 | Msa0800030:CDS | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | + | chr5_3:13429253-13429272 | Msa0800030:CDS | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | + | chr5_3:13429254-13429273 | Msa0800030:CDS | 50.0% |
| AAGAAGACGCGATGAGCGAG+TGG | - | chr5_3:13428206-13428225 | None:intergenic | 55.0% | |
| AACCAAACGCAGGACGACGT+GGG | - | chr5_3:13428232-13428251 | None:intergenic | 55.0% | |
| AAACCAAACGCAGGACGACG+TGG | - | chr5_3:13428233-13428252 | None:intergenic | 55.0% | |
| ACGTCGTCCTGCGTTTGGTT+TGG | + | chr5_3:13428232-13428251 | Msa0800030:intron | 55.0% | |
| CAGGACCTCTGTAACGCATG+GGG | - | chr5_3:13428454-13428473 | None:intergenic | 55.0% | |
| ATACCTACGTCAGGCTGCCA+TGG | + | chr5_3:13428508-13428527 | Msa0800030:intron | 55.0% | |
| CAGCACCATCACCATCTGGA+GGG | - | chr5_3:13428544-13428563 | None:intergenic | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | + | chr5_3:13429114-13429133 | Msa0800030:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+AGG | + | chr5_3:13429285-13429304 | Msa0800030:CDS | 55.0% | |
| AAGAAGACGCGATGAGCGAG+TGG | - | chr5_3:13428206-13428225 | None:intergenic | 55.0% | |
| AACCAAACGCAGGACGACGT+GGG | - | chr5_3:13428232-13428251 | None:intergenic | 55.0% | |
| AAACCAAACGCAGGACGACG+TGG | - | chr5_3:13428233-13428252 | None:intergenic | 55.0% | |
| ACGTCGTCCTGCGTTTGGTT+TGG | + | chr5_3:13428232-13428251 | Msa0800030:intron | 55.0% | |
| CAGGACCTCTGTAACGCATG+GGG | - | chr5_3:13428454-13428473 | None:intergenic | 55.0% | |
| ATACCTACGTCAGGCTGCCA+TGG | + | chr5_3:13428508-13428527 | Msa0800030:intron | 55.0% | |
| CAGCACCATCACCATCTGGA+GGG | - | chr5_3:13428544-13428563 | None:intergenic | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | + | chr5_3:13429114-13429133 | Msa0800030:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+AGG | + | chr5_3:13429285-13429304 | Msa0800030:CDS | 55.0% | |
| TTCCCACGTCGTCCTGCGTT+TGG | + | chr5_3:13428227-13428246 | Msa0800030:intron | 60.0% | |
| CGCATGGGGCCAGAGAACTT+GGG | - | chr5_3:13428440-13428459 | None:intergenic | 60.0% | |
| ACGCATGGGGCCAGAGAACT+TGG | - | chr5_3:13428441-13428460 | None:intergenic | 60.0% | |
| TCTGGCCCCATGCGTTACAG+AGG | + | chr5_3:13428446-13428465 | Msa0800030:intron | 60.0% | |
| CATCCATGGCAGCCTGACGT+AGG | - | chr5_3:13428514-13428533 | None:intergenic | 60.0% | |
| GCAGCACCATCACCATCTGG+AGG | - | chr5_3:13428545-13428564 | None:intergenic | 60.0% | |
| GCAGCAGCACCATCACCATC+TGG | - | chr5_3:13428548-13428567 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | + | chr5_3:13429260-13429279 | Msa0800030:CDS | 60.0% | |
| TTCCCACGTCGTCCTGCGTT+TGG | + | chr5_3:13428227-13428246 | Msa0800030:intron | 60.0% | |
| CGCATGGGGCCAGAGAACTT+GGG | - | chr5_3:13428440-13428459 | None:intergenic | 60.0% | |
| ACGCATGGGGCCAGAGAACT+TGG | - | chr5_3:13428441-13428460 | None:intergenic | 60.0% | |
| TCTGGCCCCATGCGTTACAG+AGG | + | chr5_3:13428446-13428465 | Msa0800030:intron | 60.0% | |
| CATCCATGGCAGCCTGACGT+AGG | - | chr5_3:13428514-13428533 | None:intergenic | 60.0% | |
| GCAGCACCATCACCATCTGG+AGG | - | chr5_3:13428545-13428564 | None:intergenic | 60.0% | |
| GCAGCAGCACCATCACCATC+TGG | - | chr5_3:13428548-13428567 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | + | chr5_3:13429260-13429279 | Msa0800030:CDS | 60.0% | |
| GGATTGACACGGCGCCCTTC+AGG | - | chr5_3:13428392-13428411 | None:intergenic | 65.0% | |
| GGATTGACACGGCGCCCTTC+AGG | - | chr5_3:13428392-13428411 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13428161 | 13429374 | 13428161 | ID=Msa0800030;Name=Msa0800030 |
| chr5_3 | mRNA | 13428161 | 13429374 | 13428161 | ID=Msa0800030-mRNA-1;Parent=Msa0800030;Name=Msa0800030-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|1|1|2|0|144 |
| chr5_3 | exon | 13428161 | 13428169 | 13428161 | ID=Msa0800030-mRNA-1:exon:5507;Parent=Msa0800030-mRNA-1 |
| chr5_3 | exon | 13428949 | 13429374 | 13428949 | ID=Msa0800030-mRNA-1:exon:5508;Parent=Msa0800030-mRNA-1 |
| chr5_3 | CDS | 13428161 | 13428169 | 13428161 | ID=Msa0800030-mRNA-1:cds;Parent=Msa0800030-mRNA-1 |
| chr5_3 | CDS | 13428949 | 13429374 | 13428949 | ID=Msa0800030-mRNA-1:cds;Parent=Msa0800030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
