Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769790 | sp|P87242|HDD1_SCHPO | 46.073 | 191 | 98 | 3 | 57 | 243 | 2 | 191 | 9.28e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769790 | A0A072TGE2 | 90.726 | 248 | 6 | 4 | 1 | 245 | 1 | 234 | 2.26e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0769790 | Msa1040120 | 0.801377 | 9.267128e-49 | -8.615850e-47 |
| Msa0222920 | Msa0769790 | 0.804964 | 1.677273e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769790 | MtrunA17_Chr0c01g0489471 | 90.726 | 248 | 6 | 4 | 1 | 245 | 1 | 234 | 4.35e-158 | 437 |
| Msa0769790 | MtrunA17_Chr2g0305421 | 73.143 | 175 | 47 | 0 | 64 | 238 | 69 | 243 | 1.84e-92 | 272 |
| Msa0769790 | MtrunA17_Chr4g0073361 | 62.871 | 202 | 69 | 2 | 43 | 238 | 15 | 216 | 1.43e-88 | 261 |
| Msa0769790 | MtrunA17_Chr4g0073371 | 65.761 | 184 | 61 | 1 | 57 | 238 | 34 | 217 | 1.86e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769790 | AT1G26160.1 | 70.168 | 238 | 56 | 4 | 15 | 240 | 17 | 251 | 5.36e-114 | 327 |
| Msa0769790 | AT2G23820.2 | 69.714 | 175 | 53 | 0 | 65 | 239 | 80 | 254 | 3.35e-89 | 265 |
| Msa0769790 | AT1G26160.2 | 64.583 | 192 | 53 | 4 | 15 | 194 | 17 | 205 | 1.11e-79 | 239 |
| Msa0769790 | AT2G23820.1 | 68.987 | 158 | 49 | 0 | 65 | 222 | 80 | 237 | 1.34e-77 | 234 |
Find 82 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATTGCTTCTGATGTTCC+TGG | 0.220721 | 5_2:+39096057 | Msa0769790:CDS |
| CATACTCCAACCACAGTTCT+TGG | 0.247596 | 5_2:-39096908 | None:intergenic |
| TGAAAACAATTCTTCTTTAG+AGG | 0.265718 | 5_2:+39096929 | Msa0769790:CDS |
| AACCCATCCTTTCCTCTTTG+TGG | 0.273114 | 5_2:-39095971 | None:intergenic |
| AACAAAATGTGCCAAGTTCT+AGG | 0.294970 | 5_2:+39096766 | Msa0769790:CDS |
| CGAATAATACATACAGTATT+AGG | 0.297736 | 5_2:+39095563 | Msa0769790:five_prime_UTR |
| GGGAAGTTCCAAACTGAAAT+AGG | 0.300209 | 5_2:+39098089 | Msa0769790:intron |
| AAAATTCTACAACCAAGTTC+TGG | 0.302414 | 5_2:-39098271 | None:intergenic |
| CAATTAGACCTGGTCTGGTT+TGG | 0.355726 | 5_2:+39098246 | Msa0769790:three_prime_UTR |
| TGGTGCCACATTGCTCATTC+TGG | 0.356906 | 5_2:+39098191 | Msa0769790:three_prime_UTR |
| ACAAGCACTGGAATATGAAA+TGG | 0.360466 | 5_2:+39097751 | Msa0769790:CDS |
| TGGGTTAATCATGGGATTAA+AGG | 0.371640 | 5_2:+39095988 | Msa0769790:CDS |
| CAACTACGCTCCTCTCGTTA+TGG | 0.382582 | 5_2:+39095760 | Msa0769790:CDS |
| TCATTCTGGTCGGTGAGATT+TGG | 0.382607 | 5_2:+39098205 | Msa0769790:three_prime_UTR |
| GCCAACAATTAGACCTGGTC+TGG | 0.397169 | 5_2:+39098241 | Msa0769790:three_prime_UTR |
| GTAAATTATTGTCAAATACT+TGG | 0.411519 | 5_2:+39098443 | Msa0769790:three_prime_UTR |
| ATTGTCTCAATAGCTATTGT+AGG | 0.413224 | 5_2:+39096679 | Msa0769790:intron |
| AAACTGAAATAGGTAAAAGT+TGG | 0.421614 | 5_2:+39098099 | Msa0769790:CDS |
| CAATAATTTACAGTCAATGT+TGG | 0.437734 | 5_2:-39098431 | None:intergenic |
| GGGTTAATCATGGGATTAAA+GGG | 0.440585 | 5_2:+39095989 | Msa0769790:CDS |
| TTAAAGCTTCCTGCTCCATT+CGG | 0.449281 | 5_2:-39096744 | None:intergenic |
| TCTGGTTTGGATCCAGAACT+TGG | 0.458729 | 5_2:+39098259 | Msa0769790:three_prime_UTR |
| GGAGGAGGAGGAGGTGTGAG+AGG | 0.460553 | 5_2:-39095810 | None:intergenic |
| AGGAAAGGATGGGTTAATCA+TGG | 0.468444 | 5_2:+39095979 | Msa0769790:CDS |
| ATCGATAGCAGAGGAGGAGG+AGG | 0.471179 | 5_2:-39095831 | None:intergenic |
| TCAAAGCCATACGGTACATA+TGG | 0.474924 | 5_2:-39096029 | None:intergenic |
| AACTGAAATAGGTAAAAGTT+GGG | 0.477183 | 5_2:+39098100 | Msa0769790:CDS |
| TTGTCTCAATAGCTATTGTA+GGG | 0.482982 | 5_2:+39096680 | Msa0769790:intron |
| TGAAATGATTCTACAAGCAC+TGG | 0.492894 | 5_2:+39097739 | Msa0769790:CDS |
| TCATCCCTCCACCTAGAACT+TGG | 0.493188 | 5_2:-39096777 | None:intergenic |
| TGAAAAGAGCCGAATGGAGC+AGG | 0.493928 | 5_2:+39096735 | Msa0769790:CDS |
| GATAGCAGAGGAGGAGGAGG+AGG | 0.495854 | 5_2:-39095828 | None:intergenic |
| CAAGCACTGGAATATGAAAT+GGG | 0.501459 | 5_2:+39097752 | Msa0769790:CDS |
| ACCAGACCAGGTCTAATTGT+TGG | 0.501689 | 5_2:-39098242 | None:intergenic |
| ACATACCTTCTGCAATATCA+TGG | 0.513774 | 5_2:-39096197 | None:intergenic |
| TTCTGGATCCAAACCAGACC+AGG | 0.516430 | 5_2:-39098254 | None:intergenic |
| GAGGAGGAGGAGGTGTGAGA+GGG | 0.516567 | 5_2:-39095809 | None:intergenic |
| TAAATTATTGTCAAATACTT+GGG | 0.516908 | 5_2:+39098444 | Msa0769790:three_prime_UTR |
| TGCAGAGCATGGAAAAGTAC+TGG | 0.522727 | 5_2:+39097954 | Msa0769790:intron |
| TTAATAATTACGCAAGCAGT+CGG | 0.524958 | 5_2:+39095663 | Msa0769790:CDS |
| AAAATCGATAGCAGAGGAGG+AGG | 0.525616 | 5_2:-39095834 | None:intergenic |
| ATGTGCCAAGTTCTAGGTGG+AGG | 0.526012 | 5_2:+39096772 | Msa0769790:CDS |
| TTCCTGGATTGAGTAGAGAA+AGG | 0.528805 | 5_2:+39096073 | Msa0769790:CDS |
| ATACTGTATGTATTATTCGT+CGG | 0.529626 | 5_2:-39095559 | None:intergenic |
| ACCATCTGATGGTGTGCCTA+AGG | 0.532689 | 5_2:+39096711 | Msa0769790:CDS |
| AATTGCACAACTTTCAACTC+TGG | 0.532940 | 5_2:-39098500 | None:intergenic |
| GAGAGCATACCTTGAGAGTG+TGG | 0.537102 | 5_2:-39095868 | None:intergenic |
| GAGAAAATCGATAGCAGAGG+AGG | 0.543157 | 5_2:-39095837 | None:intergenic |
| ACGGTACATATGGTCAGCTA+TGG | 0.543472 | 5_2:-39096019 | None:intergenic |
| TAACGAGAGGAGCGTAGTTG+CGG | 0.548111 | 5_2:-39095757 | None:intergenic |
| GTCAAATTTAAATGCGTCAA+CGG | 0.548197 | 5_2:-39098384 | None:intergenic |
| GTTGATAAAATGGCTAAAAG+TGG | 0.550713 | 5_2:+39098171 | Msa0769790:exon |
| AACCTTTCTCTACTCAATCC+AGG | 0.552687 | 5_2:-39096075 | None:intergenic |
| GGAAAGGATGGGTTAATCAT+GGG | 0.554187 | 5_2:+39095980 | Msa0769790:CDS |
| AGCTGACCATATGTACCGTA+TGG | 0.583476 | 5_2:+39096023 | Msa0769790:CDS |
| CACTCTCTGCCACACTCTCA+AGG | 0.588274 | 5_2:+39095859 | Msa0769790:CDS |
| CTCGTCCATGATATTGCAGA+AGG | 0.591615 | 5_2:+39096192 | Msa0769790:CDS |
| GTTCTAGGTGGAGGGATGAG+AGG | 0.595451 | 5_2:+39096781 | Msa0769790:CDS |
| AGACCACAAAGAGGAAAGGA+TGG | 0.598959 | 5_2:+39095968 | Msa0769790:intron |
| TAGTTGCGGAGAAGAACAAA+GGG | 0.603756 | 5_2:-39095743 | None:intergenic |
| CACCACTGCATCATCATCAA+CGG | 0.612278 | 5_2:+39095696 | Msa0769790:CDS |
| GTGTAGACCACAAAGAGGAA+AGG | 0.612615 | 5_2:+39095964 | Msa0769790:intron |
| GTAGTTGCGGAGAAGAACAA+AGG | 0.624490 | 5_2:-39095744 | None:intergenic |
| GCCTTAGGCACACCATCAGA+TGG | 0.628508 | 5_2:-39096712 | None:intergenic |
| TGAGATCCAAGAACTGTGGT+TGG | 0.629105 | 5_2:+39096902 | Msa0769790:CDS |
| TGTGCCAAGTTCTAGGTGGA+GGG | 0.631106 | 5_2:+39096773 | Msa0769790:CDS |
| GGGGATATAACACCATCTGA+TGG | 0.638298 | 5_2:+39096700 | Msa0769790:CDS |
| AGTGAGAAAATCGATAGCAG+AGG | 0.638772 | 5_2:-39095840 | None:intergenic |
| CGCCGTTGATGATGATGCAG+TGG | 0.639668 | 5_2:-39095698 | None:intergenic |
| TAAGGCTGAAAAGAGCCGAA+TGG | 0.640673 | 5_2:+39096729 | Msa0769790:CDS |
| GCCACATTGCTCATTCTGGT+CGG | 0.640875 | 5_2:+39098195 | Msa0769790:three_prime_UTR |
| TTATTGCCAACAATTAGACC+TGG | 0.642757 | 5_2:+39098236 | Msa0769790:three_prime_UTR |
| GACCACAAAGAGGAAAGGAT+GGG | 0.643435 | 5_2:+39095969 | Msa0769790:intron |
| TGAGTGACATCAAAGCCATA+CGG | 0.663318 | 5_2:-39096038 | None:intergenic |
| GGTTAATCATGGGATTAAAG+GGG | 0.672063 | 5_2:+39095990 | Msa0769790:CDS |
| TGTCTCAATAGCTATTGTAG+GGG | 0.685024 | 5_2:+39096681 | Msa0769790:intron |
| GTATTGTGTAGACCACAAAG+AGG | 0.700403 | 5_2:+39095959 | Msa0769790:intron |
| AAAATGTGCCAAGTTCTAGG+TGG | 0.701147 | 5_2:+39096769 | Msa0769790:CDS |
| TGTGAACGAACCATAACGAG+AGG | 0.701189 | 5_2:-39095770 | None:intergenic |
| CACTGCATCATCATCAACGG+CGG | 0.717600 | 5_2:+39095699 | Msa0769790:CDS |
| CTGATGAGATCCAAGAACTG+TGG | 0.731755 | 5_2:+39096898 | Msa0769790:CDS |
| ACCGACCAGAATGAGCAATG+TGG | 0.752818 | 5_2:-39098196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTATTTCTTAATAAAT+TGG | + | chr5_2:39096543-39096562 | Msa0769790:intron | 10.0% |
| !!! | TAGAATTTTAAACAATATTT+GGG | + | chr5_2:39098285-39098304 | Msa0769790:three_prime_UTR | 10.0% |
| !! | AAAAGAAAAAAGACAAAAAA+TGG | + | chr5_2:39095637-39095656 | Msa0769790:exon | 15.0% |
| !!! | ATGTCTAAAATAAAGATAAA+AGG | + | chr5_2:39096620-39096639 | Msa0769790:intron | 15.0% |
| !! | AAATAAAGATAAAAGGAATT+TGG | + | chr5_2:39096627-39096646 | Msa0769790:intron | 15.0% |
| !!! | CAAATCAGAATATATTTTTA+TGG | + | chr5_2:39097559-39097578 | Msa0769790:intron | 15.0% |
| !!! | TATTTTTTAGCATTACAAAA+CGG | - | chr5_2:39097913-39097932 | None:intergenic | 15.0% |
| !!! | TAATTTTTTGTTTTGTATTC+AGG | + | chr5_2:39098068-39098087 | Msa0769790:intron | 15.0% |
| !!! | AATTTTTTGTTTTGTATTCA+GGG | + | chr5_2:39098069-39098088 | Msa0769790:intron | 15.0% |
| !!! | AAAAAGTTAAGTTGATAAAA+TGG | + | chr5_2:39098161-39098180 | Msa0769790:exon | 15.0% |
| !!! | GTAGAATTTTAAACAATATT+TGG | + | chr5_2:39098284-39098303 | Msa0769790:three_prime_UTR | 15.0% |
| !! | ATAAAACATCATTAAAAAAG+GGG | - | chr5_2:39098356-39098375 | None:intergenic | 15.0% |
| !! | GATAAAACATCATTAAAAAA+GGG | - | chr5_2:39098357-39098376 | None:intergenic | 15.0% |
| !! | AGATAAAACATCATTAAAAA+AGG | - | chr5_2:39098358-39098377 | None:intergenic | 15.0% |
| !! | TAAATTATTGTCAAATACTT+GGG | + | chr5_2:39098444-39098463 | Msa0769790:three_prime_UTR | 15.0% |
| !!! | AATTTGGAACATTAAAAACT+TGG | + | chr5_2:39097163-39097182 | Msa0769790:intron | 20.0% |
| !!! | TGATTTTGTAGATAATATGA+AGG | + | chr5_2:39097188-39097207 | Msa0769790:intron | 20.0% |
| !! | TAGATCTGTAATATGAAAAT+TGG | + | chr5_2:39097674-39097693 | Msa0769790:intron | 20.0% |
| !! | AAAAATTATGTGATTGACTA+AGG | - | chr5_2:39098056-39098075 | None:intergenic | 20.0% |
| !!! | TTTTCTTCTTGAAATGATTT+CGG | - | chr5_2:39098129-39098148 | None:intergenic | 20.0% |
| !! | TAAAACATCATTAAAAAAGG+GGG | - | chr5_2:39098355-39098374 | None:intergenic | 20.0% |
| !! | TGGAAAAAAAAAATATGAGA+CGG | - | chr5_2:39098414-39098433 | None:intergenic | 20.0% |
| !! | GTAAATTATTGTCAAATACT+TGG | + | chr5_2:39098443-39098462 | Msa0769790:three_prime_UTR | 20.0% |
| ! | ATACTGTATGTATTATTCGT+CGG | - | chr5_2:39095562-39095581 | None:intergenic | 25.0% |
| ! | CGAATAATACATACAGTATT+AGG | + | chr5_2:39095563-39095582 | Msa0769790:five_prime_UTR | 25.0% |
| ! | CATTCAATTCAATCAGATAA+GGG | - | chr5_2:39095923-39095942 | None:intergenic | 25.0% |
| ! | ACATTCAATTCAATCAGATA+AGG | - | chr5_2:39095924-39095943 | None:intergenic | 25.0% |
| ! | AAATGTAATGTAATGCAATC+AGG | - | chr5_2:39096335-39096354 | None:intergenic | 25.0% |
| ! | CATTGAATAAACAATGTATC+TGG | - | chr5_2:39096448-39096467 | None:intergenic | 25.0% |
| ! | TTGCTTATAAAAGTGATTTG+AGG | + | chr5_2:39096490-39096509 | Msa0769790:intron | 25.0% |
| ! | TGCTTATAAAAGTGATTTGA+GGG | + | chr5_2:39096491-39096510 | Msa0769790:intron | 25.0% |
| !!! | ATTTTTCTTTTAAGTTCCGT+CGG | + | chr5_2:39096817-39096836 | Msa0769790:intron | 25.0% |
| !!! | TTTGAGATGACATTCTTTTT+TGG | + | chr5_2:39096866-39096885 | Msa0769790:intron | 25.0% |
| ! | TGAAAACAATTCTTCTTTAG+AGG | + | chr5_2:39096929-39096948 | Msa0769790:CDS | 25.0% |
| !!! | TGTTGTTAAAGATTTTGACA+AGG | + | chr5_2:39096956-39096975 | Msa0769790:CDS | 25.0% |
| !! | TGACTAAATGATTGATTCTA+GGG | - | chr5_2:39097334-39097353 | None:intergenic | 25.0% |
| ! | CTTTCGTAATATGAATTCAA+AGG | - | chr5_2:39097815-39097834 | None:intergenic | 25.0% |
| !! | AACTTTTACCTATTTCAGTT+TGG | - | chr5_2:39098100-39098119 | None:intergenic | 25.0% |
| ! | AAACTGAAATAGGTAAAAGT+TGG | + | chr5_2:39098099-39098118 | Msa0769790:CDS | 25.0% |
| ! | AACTGAAATAGGTAAAAGTT+GGG | + | chr5_2:39098100-39098119 | Msa0769790:CDS | 25.0% |
| ! | CAATAATTTACAGTCAATGT+TGG | - | chr5_2:39098434-39098453 | None:intergenic | 25.0% |
| TTAATAATTACGCAAGCAGT+CGG | + | chr5_2:39095663-39095682 | Msa0769790:CDS | 30.0% | |
| TTGCTTATAATAGTGACTAG+AGG | - | chr5_2:39096377-39096396 | None:intergenic | 30.0% | |
| GCTTATAAAAGTGATTTGAG+GGG | + | chr5_2:39096492-39096511 | Msa0769790:intron | 30.0% | |
| AGATAAAAGGAATTTGGCTA+AGG | + | chr5_2:39096633-39096652 | Msa0769790:intron | 30.0% | |
| ATTGTCTCAATAGCTATTGT+AGG | + | chr5_2:39096679-39096698 | Msa0769790:intron | 30.0% | |
| TTGTCTCAATAGCTATTGTA+GGG | + | chr5_2:39096680-39096699 | Msa0769790:intron | 30.0% | |
| AACAGAGAAAGGTTTAATGA+AGG | - | chr5_2:39097037-39097056 | None:intergenic | 30.0% | |
| AATTTACTTTGAGTCCAAGA+TGG | - | chr5_2:39097062-39097081 | None:intergenic | 30.0% | |
| ACTCAAAGTAAATTGCACAT+TGG | + | chr5_2:39097068-39097087 | Msa0769790:intron | 30.0% | |
| TGATAACTAATGCTACAAGA+AGG | - | chr5_2:39097096-39097115 | None:intergenic | 30.0% | |
| ! | CTACGATAATAGATTTTCGT+TGG | - | chr5_2:39097133-39097152 | None:intergenic | 30.0% |
| ! | TCGTAGATGTATCTGAAATT+TGG | + | chr5_2:39097147-39097166 | Msa0769790:intron | 30.0% |
| ! | GTGACTAAATGATTGATTCT+AGG | - | chr5_2:39097335-39097354 | None:intergenic | 30.0% |
| ACATAAAAGAAAGCAAGCAT+GGG | - | chr5_2:39097364-39097383 | None:intergenic | 30.0% | |
| ! | TTCTTTTATGTGTAGCCAAT+AGG | + | chr5_2:39097373-39097392 | Msa0769790:intron | 30.0% |
| ! | TCTTTTATGTGTAGCCAATA+GGG | + | chr5_2:39097374-39097393 | Msa0769790:intron | 30.0% |
| CATTAAACATGAATCCCTAT+TGG | - | chr5_2:39097391-39097410 | None:intergenic | 30.0% | |
| CAATAGGGATTCATGTTTAA+TGG | + | chr5_2:39097389-39097408 | Msa0769790:intron | 30.0% | |
| GAAAAAAATGATGATACGCA+TGG | - | chr5_2:39097521-39097540 | None:intergenic | 30.0% | |
| GAGGGAAAAAAACATAGTAA+AGG | - | chr5_2:39097640-39097659 | None:intergenic | 30.0% | |
| ! | TCTAAAGATGCATTTTACGA+GGG | - | chr5_2:39097658-39097677 | None:intergenic | 30.0% |
| ! | ATCTAAAGATGCATTTTACG+AGG | - | chr5_2:39097659-39097678 | None:intergenic | 30.0% |
| !!! | CTAATTGCATTGTTTTGATC+AGG | + | chr5_2:39097715-39097734 | Msa0769790:intron | 30.0% |
| TTGATGAGTTCAACAGTTAA+AGG | - | chr5_2:39097850-39097869 | None:intergenic | 30.0% | |
| ! | GAATTTTTCATTTCAACTGC+AGG | + | chr5_2:39097979-39097998 | Msa0769790:CDS | 30.0% |
| GAAATGCATGAATCCTTATT+TGG | + | chr5_2:39098029-39098048 | Msa0769790:intron | 30.0% | |
| ! | GTTGATAAAATGGCTAAAAG+TGG | + | chr5_2:39098171-39098190 | Msa0769790:exon | 30.0% |
| AAAATTCTACAACCAAGTTC+TGG | - | chr5_2:39098274-39098293 | None:intergenic | 30.0% | |
| GTCAAATTTAAATGCGTCAA+CGG | - | chr5_2:39098387-39098406 | None:intergenic | 30.0% | |
| TCAATCAGATAAGGGATGAA+TGG | - | chr5_2:39095915-39095934 | None:intergenic | 35.0% | |
| TGGGTTAATCATGGGATTAA+AGG | + | chr5_2:39095988-39096007 | Msa0769790:CDS | 35.0% | |
| GGGTTAATCATGGGATTAAA+GGG | + | chr5_2:39095989-39096008 | Msa0769790:CDS | 35.0% | |
| GGTTAATCATGGGATTAAAG+GGG | + | chr5_2:39095990-39096009 | Msa0769790:CDS | 35.0% | |
| ACATACCTTCTGCAATATCA+TGG | - | chr5_2:39096200-39096219 | None:intergenic | 35.0% | |
| ATTAAATGATTGAGCCTACC+TGG | + | chr5_2:39096284-39096303 | Msa0769790:intron | 35.0% | |
| TGTCTCAATAGCTATTGTAG+GGG | + | chr5_2:39096681-39096700 | Msa0769790:intron | 35.0% | |
| AACAAAATGTGCCAAGTTCT+AGG | + | chr5_2:39096766-39096785 | Msa0769790:CDS | 35.0% | |
| TACCTATTACGTAATGCAGA+TGG | + | chr5_2:39096990-39097009 | Msa0769790:intron | 35.0% | |
| ATCCATCTGCATTACGTAAT+AGG | - | chr5_2:39096995-39097014 | None:intergenic | 35.0% | |
| ! | TTTTCCTAATTACTGCCTTG+AGG | - | chr5_2:39097253-39097272 | None:intergenic | 35.0% |
| CAAGGCAGTAATTAGGAAAA+TGG | + | chr5_2:39097253-39097272 | Msa0769790:intron | 35.0% | |
| ! | GATTGATTCTAGGGAAGTTT+AGG | - | chr5_2:39097325-39097344 | None:intergenic | 35.0% |
| CACATAAAAGAAAGCAAGCA+TGG | - | chr5_2:39097365-39097384 | None:intergenic | 35.0% | |
| ! | CATTGACAAGCTTTTATTGC+TGG | - | chr5_2:39097457-39097476 | None:intergenic | 35.0% |
| AAATGATGATACGCATGGAA+GGG | - | chr5_2:39097516-39097535 | None:intergenic | 35.0% | |
| AAAATGATGATACGCATGGA+AGG | - | chr5_2:39097517-39097536 | None:intergenic | 35.0% | |
| TATGAAAATTGGAGACCTTC+TGG | + | chr5_2:39097685-39097704 | Msa0769790:intron | 35.0% | |
| TGAAATGATTCTACAAGCAC+TGG | + | chr5_2:39097739-39097758 | Msa0769790:CDS | 35.0% | |
| !! | ACAAGCACTGGAATATGAAA+TGG | + | chr5_2:39097751-39097770 | Msa0769790:CDS | 35.0% |
| !! | CAAGCACTGGAATATGAAAT+GGG | + | chr5_2:39097752-39097771 | Msa0769790:CDS | 35.0% |
| GATTGACTAAGGTCCAAATA+AGG | - | chr5_2:39098045-39098064 | None:intergenic | 35.0% | |
| TTATTGCCAACAATTAGACC+TGG | + | chr5_2:39098236-39098255 | Msa0769790:three_prime_UTR | 35.0% | |
| !!! | TGTTGTTTTCCCTGTCTAAT+AGG | + | chr5_2:39098322-39098341 | Msa0769790:three_prime_UTR | 35.0% |
| GGCAAAAATCCTATTAGACA+GGG | - | chr5_2:39098334-39098353 | None:intergenic | 35.0% | |
| TAGTTGCGGAGAAGAACAAA+GGG | - | chr5_2:39095746-39095765 | None:intergenic | 40.0% | |
| AGTGAGAAAATCGATAGCAG+AGG | - | chr5_2:39095843-39095862 | None:intergenic | 40.0% | |
| GTATTGTGTAGACCACAAAG+AGG | + | chr5_2:39095959-39095978 | Msa0769790:intron | 40.0% | |
| !! | AGGAAAGGATGGGTTAATCA+TGG | + | chr5_2:39095979-39095998 | Msa0769790:CDS | 40.0% |
| !! | GGAAAGGATGGGTTAATCAT+GGG | + | chr5_2:39095980-39095999 | Msa0769790:CDS | 40.0% |
| TCAAAGCCATACGGTACATA+TGG | - | chr5_2:39096032-39096051 | None:intergenic | 40.0% | |
| TGAGTGACATCAAAGCCATA+CGG | - | chr5_2:39096041-39096060 | None:intergenic | 40.0% | |
| TTCCTGGATTGAGTAGAGAA+AGG | + | chr5_2:39096073-39096092 | Msa0769790:CDS | 40.0% | |
| AACCTTTCTCTACTCAATCC+AGG | - | chr5_2:39096078-39096097 | None:intergenic | 40.0% | |
| CACAACACAGAAGAAAGCAA+AGG | - | chr5_2:39096153-39096172 | None:intergenic | 40.0% | |
| ! | ATTATCAAAGCACTCCAGGT+AGG | - | chr5_2:39096301-39096320 | None:intergenic | 40.0% |
| ! | AACGATTATCAAAGCACTCC+AGG | - | chr5_2:39096305-39096324 | None:intergenic | 40.0% |
| TTAAAGCTTCCTGCTCCATT+CGG | - | chr5_2:39096747-39096766 | None:intergenic | 40.0% | |
| !! | AAAATGTGCCAAGTTCTAGG+TGG | + | chr5_2:39096769-39096788 | Msa0769790:CDS | 40.0% |
| CCAAGATGGTAAACAGAGAA+AGG | - | chr5_2:39097048-39097067 | None:intergenic | 40.0% | |
| CCTTTCTCTGTTTACCATCT+TGG | + | chr5_2:39097045-39097064 | Msa0769790:intron | 40.0% | |
| TCAGTACTATCACCTCTGAA+AGG | + | chr5_2:39097219-39097238 | Msa0769790:intron | 40.0% | |
| CCTCAACATGAAGACTGTTT+GGG | - | chr5_2:39097486-39097505 | None:intergenic | 40.0% | |
| CCAAACAGTCTTCATGTTGA+GGG | + | chr5_2:39097484-39097503 | Msa0769790:intron | 40.0% | |
| GCAATTAGAAAGCAACCAGA+AGG | - | chr5_2:39097703-39097722 | None:intergenic | 40.0% | |
| ATTGTACATTGTGCAGAGCA+TGG | + | chr5_2:39097943-39097962 | Msa0769790:intron | 40.0% | |
| GGGAAGTTCCAAACTGAAAT+AGG | + | chr5_2:39098089-39098108 | Msa0769790:intron | 40.0% | |
| GGGCAAAAATCCTATTAGAC+AGG | - | chr5_2:39098335-39098354 | None:intergenic | 40.0% | |
| CACCACTGCATCATCATCAA+CGG | + | chr5_2:39095696-39095715 | Msa0769790:CDS | 45.0% | |
| GTAGTTGCGGAGAAGAACAA+AGG | - | chr5_2:39095747-39095766 | None:intergenic | 45.0% | |
| TGTGAACGAACCATAACGAG+AGG | - | chr5_2:39095773-39095792 | None:intergenic | 45.0% | |
| AAAATCGATAGCAGAGGAGG+AGG | - | chr5_2:39095837-39095856 | None:intergenic | 45.0% | |
| GAGAAAATCGATAGCAGAGG+AGG | - | chr5_2:39095840-39095859 | None:intergenic | 45.0% | |
| GTGTAGACCACAAAGAGGAA+AGG | + | chr5_2:39095964-39095983 | Msa0769790:intron | 45.0% | |
| AGACCACAAAGAGGAAAGGA+TGG | + | chr5_2:39095968-39095987 | Msa0769790:intron | 45.0% | |
| GACCACAAAGAGGAAAGGAT+GGG | + | chr5_2:39095969-39095988 | Msa0769790:intron | 45.0% | |
| AACCCATCCTTTCCTCTTTG+TGG | - | chr5_2:39095974-39095993 | None:intergenic | 45.0% | |
| ACGGTACATATGGTCAGCTA+TGG | - | chr5_2:39096022-39096041 | None:intergenic | 45.0% | |
| AGCTGACCATATGTACCGTA+TGG | + | chr5_2:39096023-39096042 | Msa0769790:CDS | 45.0% | |
| CTCATTGCTTCTGATGTTCC+TGG | + | chr5_2:39096057-39096076 | Msa0769790:CDS | 45.0% | |
| CTCGTCCATGATATTGCAGA+AGG | + | chr5_2:39096192-39096211 | Msa0769790:CDS | 45.0% | |
| TGAGTAAGTGAGTGAGTGAG+AGG | - | chr5_2:39096228-39096247 | None:intergenic | 45.0% | |
| GGGGATATAACACCATCTGA+TGG | + | chr5_2:39096700-39096719 | Msa0769790:CDS | 45.0% | |
| ! | ATTCGGCTCTTTTCAGCCTT+AGG | - | chr5_2:39096730-39096749 | None:intergenic | 45.0% |
| TAAGGCTGAAAAGAGCCGAA+TGG | + | chr5_2:39096729-39096748 | Msa0769790:CDS | 45.0% | |
| !! | TCCGTCGGAGCTTTGAAATT+TGG | + | chr5_2:39096832-39096851 | Msa0769790:intron | 45.0% |
| GCCAAATTTCAAAGCTCCGA+CGG | - | chr5_2:39096836-39096855 | None:intergenic | 45.0% | |
| CTGATGAGATCCAAGAACTG+TGG | + | chr5_2:39096898-39096917 | Msa0769790:CDS | 45.0% | |
| TGAGATCCAAGAACTGTGGT+TGG | + | chr5_2:39096902-39096921 | Msa0769790:CDS | 45.0% | |
| CATACTCCAACCACAGTTCT+TGG | - | chr5_2:39096911-39096930 | None:intergenic | 45.0% | |
| CTAATTACTGCCTTGAGGAC+AGG | - | chr5_2:39097248-39097267 | None:intergenic | 45.0% | |
| CTGTCCTCAAGGCAGTAATT+AGG | + | chr5_2:39097246-39097265 | Msa0769790:intron | 45.0% | |
| TGGAAGAGGAAAGTAGCACT+GGG | - | chr5_2:39097279-39097298 | None:intergenic | 45.0% | |
| TTGGAAGAGGAAAGTAGCAC+TGG | - | chr5_2:39097280-39097299 | None:intergenic | 45.0% | |
| ! | CAACAACGTCACTTTGGAAG+AGG | - | chr5_2:39097293-39097312 | None:intergenic | 45.0% |
| CTCTTCCAAAGTGACGTTGT+TGG | + | chr5_2:39097291-39097310 | Msa0769790:intron | 45.0% | |
| CCCAAACAGTCTTCATGTTG+AGG | + | chr5_2:39097483-39097502 | Msa0769790:intron | 45.0% | |
| CCCTCAACATGAAGACTGTT+TGG | - | chr5_2:39097487-39097506 | None:intergenic | 45.0% | |
| ! | TGCAGAGCATGGAAAAGTAC+TGG | + | chr5_2:39097954-39097973 | Msa0769790:intron | 45.0% |
| TCATTCTGGTCGGTGAGATT+TGG | + | chr5_2:39098205-39098224 | Msa0769790:three_prime_UTR | 45.0% | |
| ACCAGACCAGGTCTAATTGT+TGG | - | chr5_2:39098245-39098264 | None:intergenic | 45.0% | |
| CAATTAGACCTGGTCTGGTT+TGG | + | chr5_2:39098246-39098265 | Msa0769790:three_prime_UTR | 45.0% | |
| !! | TCTGGTTTGGATCCAGAACT+TGG | + | chr5_2:39098259-39098278 | Msa0769790:three_prime_UTR | 45.0% |
| CACTGCATCATCATCAACGG+CGG | + | chr5_2:39095699-39095718 | Msa0769790:CDS | 50.0% | |
| ! | TAACGAGAGGAGCGTAGTTG+CGG | - | chr5_2:39095760-39095779 | None:intergenic | 50.0% |
| CAACTACGCTCCTCTCGTTA+TGG | + | chr5_2:39095760-39095779 | Msa0769790:CDS | 50.0% | |
| ! | GAGAGCATACCTTGAGAGTG+TGG | - | chr5_2:39095871-39095890 | None:intergenic | 50.0% |
| ! | ACCATCTGATGGTGTGCCTA+AGG | + | chr5_2:39096711-39096730 | Msa0769790:CDS | 50.0% |
| TGAAAAGAGCCGAATGGAGC+AGG | + | chr5_2:39096735-39096754 | Msa0769790:CDS | 50.0% | |
| !! | ATGTGCCAAGTTCTAGGTGG+AGG | + | chr5_2:39096772-39096791 | Msa0769790:CDS | 50.0% |
| !! | TGTGCCAAGTTCTAGGTGGA+GGG | + | chr5_2:39096773-39096792 | Msa0769790:CDS | 50.0% |
| TCATCCCTCCACCTAGAACT+TGG | - | chr5_2:39096780-39096799 | None:intergenic | 50.0% | |
| !! | TGAAAGGTGTCCTGTCCTCA+AGG | + | chr5_2:39097235-39097254 | Msa0769790:intron | 50.0% |
| GCAAGCCAACAACGTCACTT+TGG | - | chr5_2:39097299-39097318 | None:intergenic | 50.0% | |
| CGATGTTTCGCGGTTGAAGA+AGG | - | chr5_2:39097425-39097444 | None:intergenic | 50.0% | |
| GACAGAGCTACGATGTTTCG+CGG | - | chr5_2:39097435-39097454 | None:intergenic | 50.0% | |
| !! | TGGTGCCACATTGCTCATTC+TGG | + | chr5_2:39098191-39098210 | Msa0769790:three_prime_UTR | 50.0% |
| GCCACATTGCTCATTCTGGT+CGG | + | chr5_2:39098195-39098214 | Msa0769790:three_prime_UTR | 50.0% | |
| ACCGACCAGAATGAGCAATG+TGG | - | chr5_2:39098199-39098218 | None:intergenic | 50.0% | |
| GCCAACAATTAGACCTGGTC+TGG | + | chr5_2:39098241-39098260 | Msa0769790:three_prime_UTR | 50.0% | |
| TTCTGGATCCAAACCAGACC+AGG | - | chr5_2:39098257-39098276 | None:intergenic | 50.0% | |
| !! | CGCCGTTGATGATGATGCAG+TGG | - | chr5_2:39095701-39095720 | None:intergenic | 55.0% |
| ATCGATAGCAGAGGAGGAGG+AGG | - | chr5_2:39095834-39095853 | None:intergenic | 55.0% | |
| CACTCTCTGCCACACTCTCA+AGG | + | chr5_2:39095859-39095878 | Msa0769790:CDS | 55.0% | |
| GCCTTAGGCACACCATCAGA+TGG | - | chr5_2:39096715-39096734 | None:intergenic | 55.0% | |
| ! | GTTCTAGGTGGAGGGATGAG+AGG | + | chr5_2:39096781-39096800 | Msa0769790:CDS | 55.0% |
| GAGGACAGGACACCTTTCAG+AGG | - | chr5_2:39097234-39097253 | None:intergenic | 55.0% | |
| ! | GAGGAGGAGGAGGTGTGAGA+GGG | - | chr5_2:39095812-39095831 | None:intergenic | 60.0% |
| GATAGCAGAGGAGGAGGAGG+AGG | - | chr5_2:39095831-39095850 | None:intergenic | 60.0% | |
| ! | GGAGGAGGAGGAGGTGTGAG+AGG | - | chr5_2:39095813-39095832 | None:intergenic | 65.0% |
| AGAGGAGGAGGAGGAGGAGG+AGG | - | chr5_2:39095825-39095844 | None:intergenic | 65.0% | |
| AGCAGAGGAGGAGGAGGAGG+AGG | - | chr5_2:39095828-39095847 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGGAGGAGG+AGG | - | chr5_2:39095819-39095838 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 39095543 | 39098517 | 39095543 | ID=Msa0769790;Name=Msa0769790 |
| chr5_2 | mRNA | 39095543 | 39098517 | 39095543 | ID=Msa0769790-mRNA-1;Parent=Msa0769790;Name=Msa0769790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|1|1|1|0.85|0.87|8|342|247 |
| chr5_2 | exon | 39095543 | 39095880 | 39095543 | ID=Msa0769790-mRNA-1:exon:12622;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39095970 | 39096094 | 39095970 | ID=Msa0769790-mRNA-1:exon:12623;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39096176 | 39096213 | 39096176 | ID=Msa0769790-mRNA-1:exon:12624;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39096692 | 39096802 | 39096692 | ID=Msa0769790-mRNA-1:exon:12625;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39096898 | 39096977 | 39096898 | ID=Msa0769790-mRNA-1:exon:12626;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39097737 | 39097773 | 39097737 | ID=Msa0769790-mRNA-1:exon:12627;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39097959 | 39098000 | 39097959 | ID=Msa0769790-mRNA-1:exon:12628;Parent=Msa0769790-mRNA-1 |
| chr5_2 | exon | 39098090 | 39098517 | 39098090 | ID=Msa0769790-mRNA-1:exon:12629;Parent=Msa0769790-mRNA-1 |
| chr5_2 | five_prime_UTR | 39095543 | 39095655 | 39095543 | ID=Msa0769790-mRNA-1:five_prime_utr;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39095656 | 39095880 | 39095656 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39095970 | 39096094 | 39095970 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39096176 | 39096213 | 39096176 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39096692 | 39096802 | 39096692 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39096898 | 39096977 | 39096898 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39097737 | 39097773 | 39097737 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39097959 | 39098000 | 39097959 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | CDS | 39098090 | 39098175 | 39098090 | ID=Msa0769790-mRNA-1:cds;Parent=Msa0769790-mRNA-1 |
| chr5_2 | three_prime_UTR | 39098176 | 39098517 | 39098176 | ID=Msa0769790-mRNA-1:three_prime_utr;Parent=Msa0769790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
