AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0222920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222920 MtrunA17_Chr2g0328141 97.945 146 3 0 1 146 1 146 4.62e-103 291
Msa0222920 MtrunA17_Chr2g0328131 86.014 143 20 0 1 143 1 143 4.83e-69 205
Msa0222920 MtrunA17_Chr4g0068231 32.680 153 74 3 18 142 24 175 2.76e-20 82.0
Msa0222920 MtrunA17_Chr2g0294641 30.065 153 79 3 18 142 26 178 5.98e-17 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222920 AT2G28900.1 61.111 144 56 0 1 144 1 144 3.58e-65 195
Msa0222920 AT4G16160.1 28.758 153 82 3 18 143 21 173 3.41e-17 74.3
Msa0222920 AT4G16160.2 28.387 155 82 3 18 143 21 175 7.08e-17 73.6

Find 74 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTAATCTAGCTGTTGA+TGG 0.254458 2_1:-72338703 Msa0222920:CDS
TGGTTAGAAAATGATTTAAA+TGG 0.256408 2_1:+72336742 None:intergenic
TTGTTTGTCACTACAAATAT+TGG 0.257864 2_1:+72336551 None:intergenic
ATGCCTTGGAGCAGAATTTC+CGG 0.262488 2_1:-72338775 Msa0222920:CDS
AACCATCAACAGCTAGATTA+AGG 0.310083 2_1:+72338701 None:intergenic
TTTACCTGAATGAACTGAAT+TGG 0.321590 2_1:-72336821 Msa0222920:exon
TAGTTAACAGTATGAGTGTT+AGG 0.331569 2_1:+72338836 None:intergenic
TGTTTAAAACAAACTTTATG+AGG 0.337467 2_1:-72336704 Msa0222920:three_prime_UTR
GTTGATGGTTTCTTGAAGAT+TGG 0.371740 2_1:-72338688 Msa0222920:CDS
TGTGCAAGGAAGGTGCATAC+TGG 0.379148 2_1:-72337449 Msa0222920:CDS
ATGATCGGAGGTGCGGTGAC+AGG 0.380411 2_1:-72336944 Msa0222920:CDS
ATTGCAGTAGATGCCATTAC+AGG 0.382089 2_1:-72336881 Msa0222920:CDS
CTATTATTGCATGTTTGAAA+AGG 0.386937 2_1:-72336787 Msa0222920:three_prime_UTR
GGGTTGAATTGTATTACTAT+TGG 0.413413 2_1:-72336765 Msa0222920:three_prime_UTR
ACATCCAATTCAGTTCATTC+AGG 0.416427 2_1:+72336817 None:intergenic
ACCTCTAGTCCTTCACTTGA+AGG 0.418908 2_1:-72336581 Msa0222920:three_prime_UTR
TATTATTGCATGTTTGAAAA+GGG 0.422205 2_1:-72336786 Msa0222920:three_prime_UTR
GGATCCGTGGCACCAGAGAC+TGG 0.423846 2_1:-72337290 Msa0222920:CDS
TCTACGCTCACAGGAGCTAT+AGG 0.430170 2_1:-72337348 Msa0222920:intron
TGCCTTGGAGCAGAATTTCC+GGG 0.441939 2_1:-72338774 Msa0222920:CDS
GTATATGTTGGAACAGAATA+CGG 0.442517 2_1:-72337321 Msa0222920:CDS
CGGGTCAGTGTCTTCTCCAC+AGG 0.444117 2_1:-72338755 Msa0222920:CDS
AAAATACAAAGTTGAGTTTG+TGG 0.451118 2_1:-72336344 None:intergenic
GTCTTCTCCACAGGTGGATG+TGG 0.452189 2_1:-72338746 Msa0222920:CDS
AAACAAAGGATTGGACGATC+TGG 0.463407 2_1:+72336722 None:intergenic
TGATCGGAGGTGCGGTGACA+GGG 0.467838 2_1:-72336943 Msa0222920:CDS
TGTCACCGCACCTCCGATCA+TGG 0.470776 2_1:+72336946 None:intergenic
GTGCAAGGAAGGTGCATACT+GGG 0.476518 2_1:-72337448 Msa0222920:CDS
TTCAGTTCATTCAGGTAAAG+TGG 0.477368 2_1:+72336825 None:intergenic
ATTCTTTACTCAGCCTCTCC+AGG 0.480324 2_1:-72336526 Msa0222920:three_prime_UTR
TGAGAGAATTACCCAGTCTC+TGG 0.488901 2_1:+72337278 None:intergenic
GGCAATTGCAGCCCCTGTAA+TGG 0.494547 2_1:+72336868 None:intergenic
TAAAGAGTACCTCAGTAGCC+TGG 0.497412 2_1:+72336508 None:intergenic
CTAGAATATGTCTGGTGGTA+CGG 0.518828 2_1:+72336469 None:intergenic
CTGAAGAAGATGTGCAAGGA+AGG 0.520056 2_1:-72337459 Msa0222920:CDS
AGTTAACAGTATGAGTGTTA+GGG 0.522915 2_1:+72338837 None:intergenic
GCTATAGGTGGCGTATATGT+TGG 0.523978 2_1:-72337333 Msa0222920:CDS
TATATGTTGGAACAGAATAC+GGG 0.532988 2_1:-72337320 Msa0222920:CDS
GTTTAAAACAAACTTTATGA+GGG 0.540955 2_1:-72336703 Msa0222920:three_prime_UTR
GTCAGTGTCTTCTCCACAGG+TGG 0.548058 2_1:-72338752 Msa0222920:CDS
TGACAAGACTAGAATATGTC+TGG 0.561645 2_1:+72336461 None:intergenic
TTGCAGTAGATGCCATTACA+GGG 0.565602 2_1:-72336880 Msa0222920:CDS
ACTCAGTTACTCGACGGAGC+AGG 0.574093 2_1:+72336426 None:intergenic
TCCTTCAAGTGAAGGACTAG+AGG 0.578910 2_1:+72336580 None:intergenic
CTGCAGAAGAATGCCATGAT+CGG 0.581201 2_1:-72336959 Msa0222920:intron
GATCGGAGGTGCGGTGACAG+GGG 0.583014 2_1:-72336942 Msa0222920:CDS
ACTCTTTCTGACAATATGAA+AGG 0.589407 2_1:+72338548 None:intergenic
GTTTATGAATTCTGCAGCAG+TGG 0.590673 2_1:+72336847 None:intergenic
TTACCCAGTCTCTGGTGCCA+CGG 0.593471 2_1:+72337286 None:intergenic
GATCCGTGGCACCAGAGACT+GGG 0.594640 2_1:-72337289 Msa0222920:intron
AGCTACAAGGGCACTTGCAG+AGG 0.594831 2_1:-72338574 Msa0222920:CDS
GGATGAAGTCCTTCAAGTGA+AGG 0.595597 2_1:+72336572 None:intergenic
AAAGCAATCCTGTCATGCAT+AGG 0.599403 2_1:+72338925 None:intergenic
GGTGGATGTGGTCATAGACA+TGG 0.601669 2_1:-72338734 Msa0222920:CDS
GAACAGAATACGGGGTAGAG+AGG 0.617900 2_1:-72337311 Msa0222920:CDS
ATTATTGCATGTTTGAAAAG+GGG 0.627567 2_1:-72336785 Msa0222920:three_prime_UTR
CTGTGGAGAAGACACTGACC+CGG 0.631326 2_1:+72338756 None:intergenic
GACCCGGAAATTCTGCTCCA+AGG 0.633432 2_1:+72338772 None:intergenic
GAATGCCATGATCGGAGGTG+CGG 0.635353 2_1:-72336951 Msa0222920:CDS
ACACTACAAAGCAAATGAGA+AGG 0.637754 2_1:-72336653 Msa0222920:three_prime_UTR
AGTACCTCAGTAGCCTGGAG+AGG 0.644631 2_1:+72336513 None:intergenic
CAGAAGAATGCCATGATCGG+AGG 0.646513 2_1:-72336956 Msa0222920:CDS
TCAACAGCTAGATTAAGGAA+AGG 0.647866 2_1:+72338706 None:intergenic
TATAATACTCAGTTACTCGA+CGG 0.658312 2_1:+72336420 None:intergenic
GTGGATGTGGTCATAGACAT+GGG 0.661394 2_1:-72338733 Msa0222920:CDS
TCAGCCTCTCCAGGCTACTG+AGG 0.666168 2_1:-72336517 Msa0222920:three_prime_UTR
TCTATGACCACATCCACCTG+TGG 0.676186 2_1:+72338739 None:intergenic
TACGGGGTAGAGAGGATCCG+TGG 0.679908 2_1:-72337303 Msa0222920:CDS
TGCAAGGAAGGTGCATACTG+GGG 0.686067 2_1:-72337447 Msa0222920:intron
ACGCTCACAGGAGCTATAGG+TGG 0.692992 2_1:-72337345 Msa0222920:intron
TGCAGTAGATGCCATTACAG+GGG 0.693597 2_1:-72336879 Msa0222920:CDS
CAAGACTAGAATATGTCTGG+TGG 0.704683 2_1:+72336464 None:intergenic
GCAGCTGAAGAAGATGTGCA+AGG 0.725846 2_1:-72337463 Msa0222920:intron
ATATGTTGGAACAGAATACG+GGG 0.766118 2_1:-72337319 Msa0222920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAATTCATTAATTAAA+GGG + chr2_1:72337535-72337554 None:intergenic 10.0%
!!! TTTTGACAATTTTAACAAAA+GGG + chr2_1:72336784-72336803 None:intergenic 15.0%
!! GATTGAAATTCATTAATTAA+AGG + chr2_1:72337536-72337555 None:intergenic 15.0%
!!! ATAAAGTTTGTTTTAAACAA+AGG + chr2_1:72338576-72338595 None:intergenic 15.0%
!!! CTTTTGACAATTTTAACAAA+AGG + chr2_1:72336785-72336804 None:intergenic 20.0%
!! AAAGATGAAAAATTTGATTC+TGG - chr2_1:72336801-72336820 Msa0222920:three_prime_UTR 20.0%
!! TAATAACACAAATCTAAACA+AGG + chr2_1:72336848-72336867 None:intergenic 20.0%
!! GAAATTTAACACATTGATAT+TGG + chr2_1:72336875-72336894 None:intergenic 20.0%
!! ACAATACTTCAAAAAGAAAA+AGG + chr2_1:72336905-72336924 None:intergenic 20.0%
!!! ATTTAACATTGTTGTTATCA+TGG - chr2_1:72337026-72337045 Msa0222920:intron 20.0%
!! CAATTAGAAATGTATAAAAC+TGG + chr2_1:72337101-72337120 None:intergenic 20.0%
!!! TAGAGAAAACACTTTATTTT+TGG - chr2_1:72338090-72338109 Msa0222920:intron 20.0%
!! TATTATTGCATGTTTGAAAA+GGG - chr2_1:72338495-72338514 Msa0222920:intron 20.0%
!! TGGTTAGAAAATGATTTAAA+TGG + chr2_1:72338542-72338561 None:intergenic 20.0%
!!! TGTTTAAAACAAACTTTATG+AGG - chr2_1:72338577-72338596 Msa0222920:CDS 20.0%
!!! GTTTAAAACAAACTTTATGA+GGG - chr2_1:72338578-72338597 Msa0222920:CDS 20.0%
!!! TTATCATGGTTGATTCTTTT+GGG - chr2_1:72337040-72337059 Msa0222920:intron 25.0%
!! AAATATCAGCATAGATTTTC+AGG + chr2_1:72337078-72337097 None:intergenic 25.0%
!! ATTGTGAGTATTTTACAGAT+TGG - chr2_1:72337117-72337136 Msa0222920:intron 25.0%
! TAGATAAGCTATGATGAAAA+AGG + chr2_1:72337168-72337187 None:intergenic 25.0%
! CTTAACTGTCAAATCAAAAT+TGG - chr2_1:72337306-72337325 Msa0222920:CDS 25.0%
! GAGAATCTAAATTCTCAAAA+AGG - chr2_1:72337444-72337463 Msa0222920:intron 25.0%
! TGTGAGTAAAATAAGCATTT+CGG - chr2_1:72337477-72337496 Msa0222920:intron 25.0%
!!! ACATATAACCTTTGAAATTG+TGG - chr2_1:72337630-72337649 Msa0222920:intron 25.0%
! ATTTCTGTTTCGTAAATTTG+AGG - chr2_1:72337686-72337705 Msa0222920:intron 25.0%
! TTTCTGTTTCGTAAATTTGA+GGG - chr2_1:72337687-72337706 Msa0222920:intron 25.0%
! AAGATTATCTCTCATTAACA+AGG + chr2_1:72337795-72337814 None:intergenic 25.0%
! TTGTGTTGCATTATGTAATA+TGG - chr2_1:72337863-72337882 Msa0222920:intron 25.0%
! TTATTAACAAGCATCATGTT+TGG - chr2_1:72338159-72338178 Msa0222920:intron 25.0%
! CTATTATTGCATGTTTGAAA+AGG - chr2_1:72338494-72338513 Msa0222920:intron 25.0%
! ATTATTGCATGTTTGAAAAG+GGG - chr2_1:72338496-72338515 Msa0222920:intron 25.0%
!!! GTTTGTTTTAAACAAAGGAT+TGG + chr2_1:72338571-72338590 None:intergenic 25.0%
! TTGTTTGTCACTACAAATAT+TGG + chr2_1:72338733-72338752 None:intergenic 25.0%
!!! ACATTCCTTTTTCACATAAA+AGG - chr2_1:72338895-72338914 Msa0222920:five_prime_UTR 25.0%
!! AACAACCTTTTATGTGAAAA+AGG + chr2_1:72338903-72338922 None:intergenic 25.0%
!!! TTTGTATTTTTACTCGTTAG+AGG + chr2_1:72338927-72338946 None:intergenic 25.0%
! ACAACATCATCTTTTTGTGT+GGG - chr2_1:72336393-72336412 Msa0222920:three_prime_UTR 30.0%
AGTTAACAGTATGAGTGTTA+GGG + chr2_1:72336447-72336466 None:intergenic 30.0%
TAGTTAACAGTATGAGTGTT+AGG + chr2_1:72336448-72336467 None:intergenic 30.0%
ACTCTTTCTGACAATATGAA+AGG + chr2_1:72336736-72336755 None:intergenic 30.0%
!! GTTATCATGGTTGATTCTTT+TGG - chr2_1:72337039-72337058 Msa0222920:intron 30.0%
!! TATCATGGTTGATTCTTTTG+GGG - chr2_1:72337041-72337060 Msa0222920:intron 30.0%
TCTTAGCTAGGGAAAAATAA+TGG - chr2_1:72337217-72337236 Msa0222920:intron 30.0%
! ATCTGGATTCTCTCATTTTA+GGG - chr2_1:72337255-72337274 Msa0222920:intron 30.0%
TATTTATCAAAGTCTGAACG+CGG + chr2_1:72337337-72337356 None:intergenic 30.0%
! GTATCATCATCTTTGCATTT+TGG + chr2_1:72337363-72337382 None:intergenic 30.0%
!! CTTGATTTGTCAGTATAGAT+CGG - chr2_1:72337397-72337416 Msa0222920:intron 30.0%
TCTAAATTCTCAAAAAGGCA+TGG - chr2_1:72337449-72337468 Msa0222920:CDS 30.0%
! CTAAATTCTCAAAAAGGCAT+GGG - chr2_1:72337450-72337469 Msa0222920:CDS 30.0%
!! TTTCATTGACTTTGATAGGA+GGG + chr2_1:72337567-72337586 None:intergenic 30.0%
!! AGTCTTTCATTGACTTTGAT+AGG + chr2_1:72337571-72337590 None:intergenic 30.0%
ACACATAACCTTTCAATTCA+AGG - chr2_1:72337657-72337676 Msa0222920:intron 30.0%
CACATAACCTTTCAATTCAA+GGG - chr2_1:72337658-72337677 Msa0222920:intron 30.0%
ATTTAGTCCCTTGAATTGAA+AGG + chr2_1:72337668-72337687 None:intergenic 30.0%
TTCTGTTTCGTAAATTTGAG+GGG - chr2_1:72337688-72337707 Msa0222920:intron 30.0%
GTATATGTTGGAACAGAATA+CGG - chr2_1:72337960-72337979 Msa0222920:intron 30.0%
TATATGTTGGAACAGAATAC+GGG - chr2_1:72337961-72337980 Msa0222920:intron 30.0%
ATGTTTGGAAATGAATTTGC+TGG - chr2_1:72338174-72338193 Msa0222920:intron 30.0%
! TGTTTGGAAATGAATTTGCT+GGG - chr2_1:72338175-72338194 Msa0222920:intron 30.0%
! TGTGTACACTTTCTTTTAGA+CGG - chr2_1:72338207-72338226 Msa0222920:intron 30.0%
TTTACCTGAATGAACTGAAT+TGG - chr2_1:72338460-72338479 Msa0222920:intron 30.0%
GGGTTGAATTGTATTACTAT+TGG - chr2_1:72338516-72338535 Msa0222920:intron 30.0%
!!! TCTAGTCTTGTCAACATTTT+CGG - chr2_1:72338830-72338849 Msa0222920:five_prime_UTR 30.0%
TATAATACTCAGTTACTCGA+CGG + chr2_1:72338864-72338883 None:intergenic 30.0%
AAAAATGTCCTATGCATGAC+AGG - chr2_1:72336348-72336367 Msa0222920:three_prime_UTR 35.0%
! CACAACATCATCTTTTTGTG+TGG - chr2_1:72336392-72336411 Msa0222920:three_prime_UTR 35.0%
ATGTAGTATCTAGCTAGCAA+GGG + chr2_1:72336423-72336442 None:intergenic 35.0%
AATGTAGTATCTAGCTAGCA+AGG + chr2_1:72336424-72336443 None:intergenic 35.0%
TCAACAGCTAGATTAAGGAA+AGG + chr2_1:72336578-72336597 None:intergenic 35.0%
TTCCTTAATCTAGCTGTTGA+TGG - chr2_1:72336578-72336597 Msa0222920:three_prime_UTR 35.0%
AACCATCAACAGCTAGATTA+AGG + chr2_1:72336583-72336602 None:intergenic 35.0%
!! GTTGATGGTTTCTTGAAGAT+TGG - chr2_1:72336593-72336612 Msa0222920:three_prime_UTR 35.0%
! TGAAAAAGAAGAAGGTTGGT+TGG + chr2_1:72336681-72336700 None:intergenic 35.0%
! AACCAACCTTCTTCTTTTTC+AGG - chr2_1:72336680-72336699 Msa0222920:three_prime_UTR 35.0%
AACCTGAAAAAGAAGAAGGT+TGG + chr2_1:72336685-72336704 None:intergenic 35.0%
TAACAAAACATGTCTGTTCC+AGG - chr2_1:72336952-72336971 Msa0222920:CDS 35.0%
TCATTACTTGAAACACTTCC+TGG + chr2_1:72336973-72336992 None:intergenic 35.0%
CTTATCTAAGAGTAGAGTGT+TGG - chr2_1:72337180-72337199 Msa0222920:intron 35.0%
!! TAAGAGTAGAGTGTTGGATT+GGG - chr2_1:72337186-72337205 Msa0222920:intron 35.0%
! GATCTGGATTCTCTCATTTT+AGG - chr2_1:72337254-72337273 Msa0222920:intron 35.0%
ATTTATCAAAGTCTGAACGC+GGG + chr2_1:72337336-72337355 None:intergenic 35.0%
!! CTTTCATTGACTTTGATAGG+AGG + chr2_1:72337568-72337587 None:intergenic 35.0%
! AACCAGCTTGTACAATTTTG+AGG - chr2_1:72337719-72337738 Msa0222920:intron 35.0%
ATATGTTGGAACAGAATACG+GGG - chr2_1:72337962-72337981 Msa0222920:intron 35.0%
ACTGGGTAATTCTCTCAATA+GGG - chr2_1:72338009-72338028 Msa0222920:intron 35.0%
GCAGTACATCAAAAGACAAA+GGG + chr2_1:72338306-72338325 None:intergenic 35.0%
TGCAGTACATCAAAAGACAA+AGG + chr2_1:72338307-72338326 None:intergenic 35.0%
!!! CTTGTCTTTTTTGTTGTTGC+TGG + chr2_1:72338380-72338399 None:intergenic 35.0%
TTCAGTTCATTCAGGTAAAG+TGG + chr2_1:72338459-72338478 None:intergenic 35.0%
ACATCCAATTCAGTTCATTC+AGG + chr2_1:72338467-72338486 None:intergenic 35.0%
ACACTACAAAGCAAATGAGA+AGG - chr2_1:72338628-72338647 Msa0222920:intron 35.0%
TGACAAGACTAGAATATGTC+TGG + chr2_1:72338823-72338842 None:intergenic 35.0%
AAAGCAATCCTGTCATGCAT+AGG + chr2_1:72336359-72336378 None:intergenic 40.0%
TGTAGTATCTAGCTAGCAAG+GGG + chr2_1:72336422-72336441 None:intergenic 40.0%
AGTGAGTGTGAAAAATGCCT+TGG - chr2_1:72336492-72336511 Msa0222920:three_prime_UTR 40.0%
CTGCAACCTGAAAAAGAAGA+AGG + chr2_1:72336689-72336708 None:intergenic 40.0%
!!! TTTTTCAGGTTGCAGCTACA+AGG - chr2_1:72336694-72336713 Msa0222920:three_prime_UTR 40.0%
!!! TTTTCAGGTTGCAGCTACAA+GGG - chr2_1:72336695-72336714 Msa0222920:three_prime_UTR 40.0%
CAAAAGGGCTATAGCAAAAG+TGG + chr2_1:72336769-72336788 None:intergenic 40.0%
!! CTAAGAGTAGAGTGTTGGAT+TGG - chr2_1:72337185-72337204 Msa0222920:intron 40.0%
AGCTAGGGAAAAATAATGGC+AGG - chr2_1:72337221-72337240 Msa0222920:intron 40.0%
GCTAGGGAAAAATAATGGCA+GGG - chr2_1:72337222-72337241 Msa0222920:intron 40.0%
ATGAGAGAATCCAGATCTAG+AGG + chr2_1:72337251-72337270 None:intergenic 40.0%
TTTCGGTCTTCGAAATTGCA+AGG - chr2_1:72337494-72337513 Msa0222920:intron 40.0%
GTGTAGCACCACAATTTCAA+AGG + chr2_1:72337641-72337660 None:intergenic 40.0%
GTCCTCAAAATTGTACAAGC+TGG + chr2_1:72337724-72337743 None:intergenic 40.0%
! ATTTTCCTTTCTACGCTCAC+AGG - chr2_1:72337924-72337943 Msa0222920:intron 40.0%
GACTGGGTAATTCTCTCAAT+AGG - chr2_1:72338008-72338027 Msa0222920:intron 40.0%
TCAGTTGAGAGTCTTACCTA+AGG - chr2_1:72338269-72338288 Msa0222920:intron 40.0%
AAAAGACAAAGGGAACAGAG+TGG + chr2_1:72338296-72338315 None:intergenic 40.0%
ATTGCAGTAGATGCCATTAC+AGG - chr2_1:72338400-72338419 Msa0222920:intron 40.0%
TTGCAGTAGATGCCATTACA+GGG - chr2_1:72338401-72338420 Msa0222920:intron 40.0%
GTTTATGAATTCTGCAGCAG+TGG + chr2_1:72338437-72338456 None:intergenic 40.0%
AAACAAAGGATTGGACGATC+TGG + chr2_1:72338562-72338581 None:intergenic 40.0%
CTAGAATATGTCTGGTGGTA+CGG + chr2_1:72338815-72338834 None:intergenic 40.0%
CAAGACTAGAATATGTCTGG+TGG + chr2_1:72338820-72338839 None:intergenic 40.0%
ATGCCTTGGAGCAGAATTTC+CGG - chr2_1:72336506-72336525 Msa0222920:three_prime_UTR 45.0%
GTGGATGTGGTCATAGACAT+GGG - chr2_1:72336548-72336567 Msa0222920:three_prime_UTR 45.0%
!! TGGGAGGTTTAGTCTTAGCT+AGG - chr2_1:72337205-72337224 Msa0222920:intron 45.0%
!! GGGAGGTTTAGTCTTAGCTA+GGG - chr2_1:72337206-72337225 Msa0222920:intron 45.0%
CTGAAGAAGATGTGCAAGGA+AGG - chr2_1:72337822-72337841 Msa0222920:intron 45.0%
GCTATAGGTGGCGTATATGT+TGG - chr2_1:72337948-72337967 Msa0222920:intron 45.0%
TGAGAGAATTACCCAGTCTC+TGG + chr2_1:72338006-72338025 None:intergenic 45.0%
GGGTAATTCTCTCAATAGGG+TGG - chr2_1:72338012-72338031 Msa0222920:intron 45.0%
CTGCAGAAGAATGCCATGAT+CGG - chr2_1:72338322-72338341 Msa0222920:intron 45.0%
TGCAGTAGATGCCATTACAG+GGG - chr2_1:72338402-72338421 Msa0222920:intron 45.0%
ACCTCTAGTCCTTCACTTGA+AGG - chr2_1:72338700-72338719 Msa0222920:CDS 45.0%
TCCTTCAAGTGAAGGACTAG+AGG + chr2_1:72338704-72338723 None:intergenic 45.0%
GGATGAAGTCCTTCAAGTGA+AGG + chr2_1:72338712-72338731 None:intergenic 45.0%
ATTCTTTACTCAGCCTCTCC+AGG - chr2_1:72338755-72338774 Msa0222920:CDS 45.0%
!! TAAAGAGTACCTCAGTAGCC+TGG + chr2_1:72338776-72338795 None:intergenic 45.0%
TGCCTTGGAGCAGAATTTCC+GGG - chr2_1:72336507-72336526 Msa0222920:three_prime_UTR 50.0%
TCTATGACCACATCCACCTG+TGG + chr2_1:72336545-72336564 None:intergenic 50.0%
GGTGGATGTGGTCATAGACA+TGG - chr2_1:72336547-72336566 Msa0222920:three_prime_UTR 50.0%
!! GAGTAGAGTGTTGGATTGGG+AGG - chr2_1:72337189-72337208 Msa0222920:intron 50.0%
GCAGCTGAAGAAGATGTGCA+AGG - chr2_1:72337818-72337837 Msa0222920:intron 50.0%
! TGTGCAAGGAAGGTGCATAC+TGG - chr2_1:72337832-72337851 Msa0222920:intron 50.0%
! GTGCAAGGAAGGTGCATACT+GGG - chr2_1:72337833-72337852 Msa0222920:intron 50.0%
! TGCAAGGAAGGTGCATACTG+GGG - chr2_1:72337834-72337853 Msa0222920:intron 50.0%
TAGCTCCTGTGAGCGTAGAA+AGG + chr2_1:72337932-72337951 None:intergenic 50.0%
TCTACGCTCACAGGAGCTAT+AGG - chr2_1:72337933-72337952 Msa0222920:intron 50.0%
GAACAGAATACGGGGTAGAG+AGG - chr2_1:72337970-72337989 Msa0222920:intron 50.0%
TGGACTTGTCGTCAACGTGA+TGG - chr2_1:72338110-72338129 Msa0222920:intron 50.0%
AAGGGAACAGAGTGGTCCTT+AGG + chr2_1:72338288-72338307 None:intergenic 50.0%
CAGAAGAATGCCATGATCGG+AGG - chr2_1:72338325-72338344 Msa0222920:intron 50.0%
GACCCGGAAATTCTGCTCCA+AGG + chr2_1:72336512-72336531 None:intergenic 55.0%
CTGTGGAGAAGACACTGACC+CGG + chr2_1:72336528-72336547 None:intergenic 55.0%
GTCAGTGTCTTCTCCACAGG+TGG - chr2_1:72336529-72336548 Msa0222920:three_prime_UTR 55.0%
GTCTTCTCCACAGGTGGATG+TGG - chr2_1:72336535-72336554 Msa0222920:three_prime_UTR 55.0%
!! AGCTACAAGGGCACTTGCAG+AGG - chr2_1:72336707-72336726 Msa0222920:three_prime_UTR 55.0%
GGCAGGGAAACCTCTAGATC+TGG - chr2_1:72337238-72337257 Msa0222920:intron 55.0%
ACGCTCACAGGAGCTATAGG+TGG - chr2_1:72337936-72337955 Msa0222920:intron 55.0%
! TTACCCAGTCTCTGGTGCCA+CGG + chr2_1:72337998-72338017 None:intergenic 55.0%
GAATGCCATGATCGGAGGTG+CGG - chr2_1:72338330-72338349 Msa0222920:intron 55.0%
GGCAATTGCAGCCCCTGTAA+TGG + chr2_1:72338416-72338435 None:intergenic 55.0%
AGTACCTCAGTAGCCTGGAG+AGG + chr2_1:72338771-72338790 None:intergenic 55.0%
ACTCAGTTACTCGACGGAGC+AGG + chr2_1:72338858-72338877 None:intergenic 55.0%
CGGGTCAGTGTCTTCTCCAC+AGG - chr2_1:72336526-72336545 Msa0222920:three_prime_UTR 60.0%
TACGGGGTAGAGAGGATCCG+TGG - chr2_1:72337978-72337997 Msa0222920:intron 60.0%
GATCCGTGGCACCAGAGACT+GGG - chr2_1:72337992-72338011 Msa0222920:intron 60.0%
TGTCACCGCACCTCCGATCA+TGG + chr2_1:72338338-72338357 None:intergenic 60.0%
! ATGATCGGAGGTGCGGTGAC+AGG - chr2_1:72338337-72338356 Msa0222920:intron 60.0%
! TGATCGGAGGTGCGGTGACA+GGG - chr2_1:72338338-72338357 Msa0222920:intron 60.0%
TCAGCCTCTCCAGGCTACTG+AGG - chr2_1:72338764-72338783 Msa0222920:CDS 60.0%
GGATCCGTGGCACCAGAGAC+TGG - chr2_1:72337991-72338010 Msa0222920:intron 65.0%
! GATCGGAGGTGCGGTGACAG+GGG - chr2_1:72338339-72338358 Msa0222920:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72336347 72338956 72336347 ID=Msa0222920;Name=Msa0222920
chr2_1 mRNA 72336347 72338956 72336347 ID=Msa0222920-mRNA-1;Parent=Msa0222920;Name=Msa0222920-mRNA-1;_AED=0.35;_eAED=0.35;_QI=138|1|1|1|0.83|0.71|7|488|146
chr2_1 exon 72336347 72336975 72336347 ID=Msa0222920-mRNA-1:exon:20951;Parent=Msa0222920-mRNA-1
chr2_1 exon 72337290 72337357 72337290 ID=Msa0222920-mRNA-1:exon:20950;Parent=Msa0222920-mRNA-1
chr2_1 exon 72337448 72337481 72337448 ID=Msa0222920-mRNA-1:exon:20949;Parent=Msa0222920-mRNA-1
chr2_1 exon 72338298 72338329 72338298 ID=Msa0222920-mRNA-1:exon:20948;Parent=Msa0222920-mRNA-1
chr2_1 exon 72338550 72338601 72338550 ID=Msa0222920-mRNA-1:exon:20947;Parent=Msa0222920-mRNA-1
chr2_1 exon 72338684 72338873 72338684 ID=Msa0222920-mRNA-1:exon:20946;Parent=Msa0222920-mRNA-1
chr2_1 exon 72338895 72338956 72338895 ID=Msa0222920-mRNA-1:exon:20945;Parent=Msa0222920-mRNA-1
chr2_1 five_prime_UTR 72338895 72338956 72338895 ID=Msa0222920-mRNA-1:five_prime_utr;Parent=Msa0222920-mRNA-1
chr2_1 five_prime_UTR 72338798 72338873 72338798 ID=Msa0222920-mRNA-1:five_prime_utr;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72338684 72338797 72338684 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72338550 72338601 72338550 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72338298 72338329 72338298 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72337448 72337481 72337448 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72337290 72337357 72337290 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 CDS 72336835 72336975 72336835 ID=Msa0222920-mRNA-1:cds;Parent=Msa0222920-mRNA-1
chr2_1 three_prime_UTR 72336347 72336834 72336347 ID=Msa0222920-mRNA-1:three_prime_utr;Parent=Msa0222920-mRNA-1
Gene Sequence

>Msa0222920

ATGCCTTGGAGCAGAATTTCCGGGTCAGTGTCTTCTCCACAGGTGGATGTGGTCATAGACATGGGAAATCCTTTCCTTAATCTAGCTGTTGATGGTTTCTTGAAGATTGGAACTGTTGCAGCTACAAGGGCACTTGCAGAGGATACCTTTCATATTGTCAGAAAGAGAAGTGTTTCAAGTAATGATTTTGAGAAAACTCTGAAGAAGATGTGCAAGGAAGGTGCATACTGGGGAGCTATAGGTGGCGTATATGTTGGAACAGAATACGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGAAGAATGCCATGATCGGAGGTGCGGTGACAGGGGCTCTAGTATCTGCAGCCAGCAACAACAAAAAAGACAAGATTGCAGTAGATGCCATTACAGGGGCTGCAATTGCCACTGCTGCAGAATTCATAAACCACTTTACCTGA

Protein sequence

>Msa0222920

MPWSRISGSVSSPQVDVVIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKRSVSSNDFEKTLKKMCKEGAYWGAIGGVYVGTEYGVERIRGTRDWKNAMIGGAVTGALVSAASNNKKDKIAVDAITGAAIATAAEFINHFT*