Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771040 | XP_003614785.1 | 97.518 | 282 | 7 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771040 | sp|Q5DWG1|CRJ35_CRYJA | 54.741 | 232 | 99 | 3 | 12 | 239 | 8 | 237 | 8.45e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771040 | G7K8X4 | 97.518 | 282 | 7 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0771040 | Msa0849650 | 0.901908 | 1.664044e-78 | -8.615850e-47 |
| Msa0771040 | Msa1356350 | 0.902190 | 1.248665e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771040 | MtrunA17_Chr5g0424221 | 97.518 | 282 | 7 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| Msa0771040 | MtrunA17_Chr8g0351851 | 52.055 | 219 | 98 | 4 | 28 | 239 | 19 | 237 | 6.91e-77 | 233 |
| Msa0771040 | MtrunA17_Chr8g0392961 | 54.338 | 219 | 93 | 4 | 33 | 244 | 31 | 249 | 9.23e-77 | 234 |
| Msa0771040 | MtrunA17_Chr6g0482741 | 49.372 | 239 | 114 | 4 | 8 | 239 | 1 | 239 | 2.53e-75 | 229 |
| Msa0771040 | MtrunA17_Chr1g0154591 | 51.570 | 223 | 100 | 2 | 27 | 241 | 11 | 233 | 5.34e-74 | 226 |
| Msa0771040 | MtrunA17_Chr8g0371771 | 50.000 | 232 | 108 | 5 | 13 | 239 | 15 | 243 | 2.19e-73 | 227 |
| Msa0771040 | MtrunA17_Chr8g0357311 | 48.548 | 241 | 113 | 6 | 9 | 239 | 7 | 246 | 1.08e-71 | 221 |
| Msa0771040 | MtrunA17_Chr8g0371781 | 49.785 | 233 | 102 | 5 | 27 | 244 | 26 | 258 | 1.11e-71 | 223 |
| Msa0771040 | MtrunA17_Chr8g0352471 | 48.163 | 245 | 116 | 6 | 11 | 245 | 9 | 252 | 5.48e-71 | 221 |
| Msa0771040 | MtrunA17_Chr3g0141341 | 50.679 | 221 | 101 | 3 | 27 | 239 | 10 | 230 | 8.31e-71 | 218 |
| Msa0771040 | MtrunA17_Chr4g0037331 | 51.818 | 220 | 96 | 6 | 27 | 239 | 23 | 239 | 8.91e-71 | 221 |
| Msa0771040 | MtrunA17_Chr5g0405611 | 49.351 | 231 | 108 | 5 | 13 | 239 | 82 | 307 | 1.69e-70 | 222 |
| Msa0771040 | MtrunA17_Chr3g0112091 | 45.228 | 241 | 118 | 5 | 8 | 239 | 1 | 236 | 7.78e-70 | 216 |
| Msa0771040 | MtrunA17_Chr5g0428801 | 47.826 | 230 | 107 | 5 | 28 | 244 | 25 | 254 | 1.64e-69 | 217 |
| Msa0771040 | MtrunA17_Chr5g0405581 | 48.617 | 253 | 113 | 9 | 1 | 239 | 1 | 250 | 8.36e-69 | 215 |
| Msa0771040 | MtrunA17_Chr1g0156711 | 48.996 | 249 | 110 | 10 | 4 | 240 | 3 | 246 | 2.68e-67 | 212 |
| Msa0771040 | MtrunA17_Chr7g0239131 | 46.544 | 217 | 108 | 3 | 31 | 239 | 25 | 241 | 1.54e-66 | 207 |
| Msa0771040 | MtrunA17_Chr6g0452331 | 44.400 | 250 | 118 | 8 | 4 | 239 | 9 | 251 | 2.69e-64 | 202 |
| Msa0771040 | MtrunA17_Chr3g0142781 | 46.341 | 246 | 120 | 8 | 6 | 239 | 3 | 248 | 7.37e-63 | 201 |
| Msa0771040 | MtrunA17_Chr1g0180161 | 47.748 | 222 | 105 | 7 | 32 | 243 | 25 | 245 | 1.59e-59 | 190 |
| Msa0771040 | MtrunA17_Chr1g0180121 | 47.248 | 218 | 104 | 7 | 32 | 239 | 25 | 241 | 1.65e-59 | 189 |
| Msa0771040 | MtrunA17_Chr2g0311561 | 44.105 | 229 | 118 | 6 | 27 | 245 | 9 | 237 | 2.36e-58 | 188 |
| Msa0771040 | MtrunA17_Chr4g0037351 | 43.426 | 251 | 126 | 7 | 1 | 239 | 1 | 247 | 3.05e-58 | 189 |
| Msa0771040 | MtrunA17_Chr2g0312181 | 43.802 | 242 | 122 | 7 | 8 | 239 | 5 | 242 | 3.52e-58 | 186 |
| Msa0771040 | MtrunA17_Chr4g0031221 | 42.739 | 241 | 120 | 9 | 12 | 239 | 16 | 251 | 3.83e-58 | 186 |
| Msa0771040 | MtrunA17_Chr2g0311551 | 41.154 | 260 | 135 | 6 | 15 | 264 | 17 | 268 | 4.67e-58 | 199 |
| Msa0771040 | MtrunA17_Chr1g0179851 | 47.248 | 218 | 104 | 7 | 32 | 239 | 22 | 238 | 1.25e-57 | 184 |
| Msa0771040 | MtrunA17_Chr2g0311521 | 46.429 | 224 | 108 | 6 | 28 | 239 | 23 | 246 | 1.50e-57 | 198 |
| Msa0771040 | MtrunA17_Chr1g0179891 | 42.857 | 245 | 121 | 9 | 5 | 239 | 1 | 236 | 1.02e-56 | 182 |
| Msa0771040 | MtrunA17_Chr1g0180231 | 46.330 | 218 | 106 | 7 | 32 | 239 | 25 | 241 | 1.33e-56 | 182 |
| Msa0771040 | MtrunA17_Chr1g0179871 | 46.330 | 218 | 106 | 7 | 32 | 239 | 25 | 241 | 1.33e-56 | 182 |
| Msa0771040 | MtrunA17_Chr7g0265011 | 40.650 | 246 | 135 | 7 | 4 | 239 | 42 | 286 | 7.21e-56 | 181 |
| Msa0771040 | MtrunA17_Chr1g0180221 | 45.872 | 218 | 107 | 7 | 32 | 239 | 65 | 281 | 1.13e-55 | 181 |
| Msa0771040 | MtrunA17_Chr5g0397821 | 46.544 | 217 | 96 | 7 | 28 | 239 | 23 | 224 | 2.80e-53 | 173 |
| Msa0771040 | MtrunA17_Chr8g0386341 | 42.562 | 242 | 116 | 8 | 3 | 239 | 24 | 247 | 4.83e-52 | 170 |
| Msa0771040 | MtrunA17_Chr5g0397831 | 42.063 | 252 | 116 | 9 | 1 | 239 | 1 | 235 | 9.13e-51 | 167 |
| Msa0771040 | MtrunA17_Chr2g0311531 | 42.523 | 214 | 97 | 7 | 31 | 239 | 29 | 221 | 3.40e-44 | 150 |
| Msa0771040 | MtrunA17_Chr2g0311501 | 40.884 | 181 | 97 | 7 | 68 | 239 | 2 | 181 | 5.42e-39 | 135 |
| Msa0771040 | MtrunA17_Chr5g0406771 | 42.236 | 161 | 81 | 6 | 31 | 179 | 15 | 175 | 1.39e-33 | 120 |
| Msa0771040 | MtrunA17_Chr1g0179911 | 31.174 | 247 | 142 | 9 | 5 | 239 | 7 | 237 | 3.77e-31 | 116 |
| Msa0771040 | MtrunA17_Chr2g0309611 | 30.488 | 246 | 153 | 9 | 7 | 238 | 8 | 249 | 3.82e-31 | 116 |
| Msa0771040 | MtrunA17_Chr8g0386351 | 37.989 | 179 | 98 | 5 | 1 | 175 | 37 | 206 | 1.78e-28 | 108 |
| Msa0771040 | MtrunA17_Chr1g0180181 | 49.412 | 85 | 41 | 2 | 161 | 243 | 18 | 102 | 8.64e-20 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771040 | AT1G77700.2 | 67.164 | 268 | 87 | 1 | 1 | 267 | 33 | 300 | 1.14e-134 | 384 |
| Msa0771040 | AT1G77700.3 | 67.769 | 242 | 78 | 0 | 1 | 242 | 33 | 274 | 4.40e-124 | 357 |
| Msa0771040 | AT1G77700.1 | 62.879 | 264 | 94 | 2 | 20 | 280 | 80 | 342 | 2.78e-120 | 348 |
| Msa0771040 | AT1G19320.1 | 49.798 | 247 | 107 | 4 | 4 | 240 | 8 | 247 | 5.35e-79 | 239 |
| Msa0771040 | AT1G75050.1 | 49.167 | 240 | 115 | 3 | 11 | 243 | 7 | 246 | 8.36e-79 | 239 |
| Msa0771040 | AT1G75030.1 | 51.046 | 239 | 107 | 4 | 13 | 243 | 10 | 246 | 2.96e-78 | 238 |
| Msa0771040 | AT1G75040.1 | 49.794 | 243 | 107 | 4 | 2 | 239 | 6 | 238 | 2.79e-77 | 235 |
| Msa0771040 | AT1G18250.1 | 53.125 | 224 | 98 | 5 | 27 | 243 | 19 | 242 | 5.49e-76 | 232 |
| Msa0771040 | AT1G18250.2 | 52.444 | 225 | 100 | 5 | 26 | 243 | 19 | 243 | 1.09e-75 | 231 |
| Msa0771040 | AT1G73620.1 | 51.556 | 225 | 102 | 4 | 27 | 244 | 40 | 264 | 3.37e-73 | 225 |
| Msa0771040 | AT4G38660.1 | 44.944 | 267 | 134 | 7 | 11 | 268 | 13 | 275 | 5.38e-70 | 220 |
| Msa0771040 | AT5G24620.1 | 45.600 | 250 | 121 | 5 | 11 | 245 | 7 | 256 | 3.20e-69 | 220 |
| Msa0771040 | AT5G24620.4 | 45.600 | 250 | 121 | 5 | 11 | 245 | 62 | 311 | 4.00e-69 | 221 |
| Msa0771040 | AT4G38660.2 | 46.774 | 248 | 120 | 6 | 30 | 268 | 9 | 253 | 4.07e-69 | 217 |
| Msa0771040 | AT5G24620.3 | 45.600 | 250 | 121 | 5 | 11 | 245 | 83 | 332 | 5.74e-69 | 222 |
| Msa0771040 | AT1G75800.1 | 46.212 | 264 | 120 | 9 | 7 | 252 | 1 | 260 | 2.90e-67 | 213 |
| Msa0771040 | AT4G24180.6 | 47.431 | 253 | 111 | 9 | 7 | 244 | 15 | 260 | 2.29e-66 | 208 |
| Msa0771040 | AT4G24180.1 | 47.638 | 254 | 111 | 9 | 7 | 245 | 15 | 261 | 3.38e-66 | 209 |
| Msa0771040 | AT4G24180.2 | 46.124 | 258 | 117 | 9 | 3 | 245 | 6 | 256 | 7.33e-66 | 208 |
| Msa0771040 | AT4G24180.5 | 45.914 | 257 | 117 | 9 | 3 | 244 | 6 | 255 | 1.01e-65 | 206 |
| Msa0771040 | AT2G17860.1 | 47.210 | 233 | 108 | 7 | 27 | 244 | 21 | 253 | 6.46e-65 | 204 |
| Msa0771040 | AT1G20030.1 | 47.280 | 239 | 112 | 8 | 28 | 252 | 2 | 240 | 6.80e-64 | 203 |
| Msa0771040 | AT4G36010.1 | 47.881 | 236 | 107 | 7 | 27 | 246 | 21 | 256 | 7.29e-64 | 203 |
| Msa0771040 | AT4G36010.2 | 47.881 | 236 | 107 | 7 | 27 | 246 | 21 | 256 | 7.29e-64 | 203 |
| Msa0771040 | AT1G20030.2 | 47.280 | 239 | 112 | 8 | 28 | 252 | 19 | 257 | 7.61e-64 | 203 |
| Msa0771040 | AT5G40020.1 | 42.400 | 250 | 130 | 7 | 1 | 239 | 1 | 247 | 9.98e-64 | 201 |
| Msa0771040 | AT5G02140.2 | 45.249 | 221 | 112 | 4 | 31 | 242 | 23 | 243 | 8.47e-63 | 198 |
| Msa0771040 | AT5G02140.1 | 45.249 | 221 | 112 | 4 | 31 | 242 | 23 | 243 | 1.02e-62 | 199 |
| Msa0771040 | AT4G38670.3 | 47.297 | 222 | 104 | 8 | 31 | 239 | 25 | 246 | 2.80e-59 | 190 |
| Msa0771040 | AT4G38670.1 | 47.297 | 222 | 104 | 8 | 31 | 239 | 25 | 246 | 2.80e-59 | 190 |
| Msa0771040 | AT2G28790.2 | 43.443 | 244 | 124 | 9 | 9 | 239 | 31 | 273 | 4.61e-59 | 189 |
| Msa0771040 | AT4G38670.2 | 47.297 | 222 | 104 | 8 | 31 | 239 | 9 | 230 | 5.51e-59 | 189 |
| Msa0771040 | AT2G28790.1 | 43.443 | 244 | 124 | 9 | 9 | 239 | 6 | 248 | 6.47e-59 | 188 |
| Msa0771040 | AT4G24180.3 | 47.436 | 234 | 101 | 9 | 7 | 225 | 15 | 241 | 2.08e-58 | 189 |
| Msa0771040 | AT4G24180.4 | 50.718 | 209 | 85 | 8 | 32 | 225 | 31 | 236 | 4.73e-58 | 188 |
| Msa0771040 | AT4G11650.1 | 43.103 | 232 | 111 | 7 | 27 | 254 | 21 | 235 | 1.12e-52 | 172 |
| Msa0771040 | AT5G38280.1 | 38.519 | 270 | 145 | 10 | 28 | 282 | 24 | 287 | 4.29e-51 | 178 |
| Msa0771040 | AT5G38280.2 | 38.519 | 270 | 145 | 10 | 28 | 282 | 24 | 287 | 5.52e-51 | 177 |
| Msa0771040 | AT4G18253.1 | 37.860 | 243 | 137 | 7 | 9 | 243 | 5 | 241 | 3.32e-48 | 160 |
| Msa0771040 | AT4G36000.2 | 54.545 | 143 | 55 | 4 | 101 | 239 | 1 | 137 | 3.66e-47 | 157 |
| Msa0771040 | AT4G36000.1 | 54.545 | 143 | 55 | 4 | 101 | 239 | 1 | 137 | 3.66e-47 | 157 |
| Msa0771040 | AT4G18250.1 | 39.916 | 238 | 130 | 8 | 10 | 239 | 39 | 271 | 3.61e-42 | 154 |
| Msa0771040 | AT1G70250.1 | 38.667 | 225 | 123 | 7 | 28 | 239 | 144 | 366 | 4.16e-42 | 154 |
| Msa0771040 | AT5G24620.2 | 48.800 | 125 | 57 | 2 | 128 | 245 | 15 | 139 | 4.20e-36 | 131 |
| Msa0771040 | AT2G24810.1 | 56.410 | 78 | 34 | 0 | 163 | 240 | 116 | 193 | 3.24e-24 | 97.1 |
Find 76 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAGGATTGTCCTTGTTTA+AGG | 0.171240 | 5_2:-42990224 | None:intergenic |
| TATTGTTGTAGAGGAAATTT+TGG | 0.182203 | 5_2:+42990612 | Msa0771040:CDS |
| TAAGTTGGAGTGGCCGAATT+TGG | 0.220125 | 5_2:+42990262 | Msa0771040:CDS |
| CTTTGGCCAGCTGTGTTTCC+AGG | 0.226022 | 5_2:+42990174 | Msa0771040:CDS |
| CTTTGGGACAAGTTAATCTT+AGG | 0.252225 | 5_2:-42990518 | None:intergenic |
| AGACTTAACGGAAAGTTCTT+TGG | 0.271584 | 5_2:-42990535 | None:intergenic |
| GGCATTGTCCGTCTCCATTT+TGG | 0.275296 | 5_2:-42990308 | None:intergenic |
| ATATATTGTTCTACATAAAA+AGG | 0.319988 | 5_2:+42991146 | Msa0771040:three_prime_UTR |
| ATTCGGCCACTCCAACTTAC+TGG | 0.329779 | 5_2:-42990258 | None:intergenic |
| GTTTATCGGCTTAACAGAAA+TGG | 0.331307 | 5_2:-42990457 | None:intergenic |
| GGGTGCAACTTTGACCAAAA+TGG | 0.342466 | 5_2:+42990294 | Msa0771040:CDS |
| CTCCTTGCAGTAGTTTACTA+TGG | 0.350015 | 5_2:-42990148 | None:intergenic |
| AATGTTGGTTTACAAGTAGA+AGG | 0.354055 | 5_2:-42990639 | None:intergenic |
| GACTTAACGGAAAGTTCTTT+GGG | 0.366979 | 5_2:-42990534 | None:intergenic |
| GGCCGAATTTGGGCTAGAAC+TGG | 0.380854 | 5_2:+42990273 | Msa0771040:CDS |
| TCAGCTCTTAGTTTGTGAAT+TGG | 0.383275 | 5_2:+42991028 | Msa0771040:exon |
| GGTCTTTCCGTTAGACTTAA+CGG | 0.394785 | 5_2:-42990547 | None:intergenic |
| CAAGGCTTGACGTCGTTGAT+TGG | 0.395425 | 5_2:+42990974 | Msa0771040:CDS |
| AAGTTGGAGTGGCCGAATTT+GGG | 0.395699 | 5_2:+42990263 | Msa0771040:CDS |
| TACAATGAAGTTTGTGATCA+TGG | 0.414865 | 5_2:-42990943 | None:intergenic |
| ATTGCAAGAACCAATGTGAT+TGG | 0.416070 | 5_2:-42989989 | None:intergenic |
| ACCCAGTTCTAGCCCAAATT+CGG | 0.418400 | 5_2:-42990275 | None:intergenic |
| GAGGCTAACATCGTAGAAAT+CGG | 0.419130 | 5_2:-42990415 | None:intergenic |
| ACTACTGCAAGGAGACTCTT+TGG | 0.422300 | 5_2:+42990157 | Msa0771040:CDS |
| AATTATAACAATCACAGTTA+TGG | 0.425143 | 5_2:+42989943 | Msa0771040:exon |
| ATTTCTGTTAAGCCGATAAA+CGG | 0.435167 | 5_2:+42990459 | Msa0771040:CDS |
| AACTTCTTTGAATAAAATGT+TGG | 0.447829 | 5_2:-42990654 | None:intergenic |
| AGCAACAACGTAATCCGTTC+CGG | 0.459270 | 5_2:-42990742 | None:intergenic |
| AAAGGAAATTGCTCAACTGC+TGG | 0.462531 | 5_2:+42990483 | Msa0771040:CDS |
| TTTATCGGCTTAACAGAAAT+GGG | 0.466301 | 5_2:-42990456 | None:intergenic |
| TTTGGCCAGCTGTGTTTCCA+GGG | 0.472817 | 5_2:+42990175 | Msa0771040:CDS |
| GTGAATTCAGCGAGCGATGC+CGG | 0.474866 | 5_2:-42990381 | None:intergenic |
| TTGTTGCTTTCTGTGCTGAC+AGG | 0.489131 | 5_2:+42990757 | Msa0771040:CDS |
| TAATGTGGTGCCGCATGCAC+CGG | 0.497286 | 5_2:-42990334 | None:intergenic |
| TAAGCATAACTATAAGAAGT+TGG | 0.500482 | 5_2:-42990690 | None:intergenic |
| ACATTAAAATGTGGAGGGGC+AGG | 0.501285 | 5_2:+42990351 | Msa0771040:CDS |
| GGAGACGGACAATGCCAAAC+CGG | 0.501682 | 5_2:+42990315 | Msa0771040:CDS |
| GTTAAGCCGATAAACGGAAA+AGG | 0.526454 | 5_2:+42990465 | Msa0771040:CDS |
| GAACTTTCCGTTAAGTCTAA+CGG | 0.532105 | 5_2:+42990540 | Msa0771040:CDS |
| TACGATGTTAGCCTCGTCGA+TGG | 0.533977 | 5_2:+42990423 | Msa0771040:CDS |
| TGGTGCCGCATGCACCGGTT+TGG | 0.537187 | 5_2:-42990329 | None:intergenic |
| TGACGTCGTTGATTGGAAGC+TGG | 0.539285 | 5_2:+42990981 | Msa0771040:CDS |
| GTGCATGTGAAAATACTTGT+TGG | 0.541354 | 5_2:-42990720 | None:intergenic |
| GGGGAACATTTCAACGGCGG+AGG | 0.542017 | 5_2:+42990195 | Msa0771040:CDS |
| AGGCTAACATCGTAGAAATC+GGG | 0.543886 | 5_2:-42990414 | None:intergenic |
| CCGCCGTTGAAATGTTCCCC+TGG | 0.544537 | 5_2:-42990192 | None:intergenic |
| TGTTCACCGCTCCAGTAAGT+TGG | 0.544607 | 5_2:+42990247 | Msa0771040:CDS |
| ATGTTGGTTTACAAGTAGAA+GGG | 0.546520 | 5_2:-42990638 | None:intergenic |
| TGTTCCCCTGGAAACACAGC+TGG | 0.551986 | 5_2:-42990180 | None:intergenic |
| AGTCTAACGGAAAGACCGTT+GGG | 0.555398 | 5_2:+42990553 | Msa0771040:CDS |
| CTTCATTGTAGTGGATCACA+AGG | 0.557221 | 5_2:+42990956 | Msa0771040:CDS |
| CAATGCCAAACCGGTGCATG+CGG | 0.560695 | 5_2:+42990324 | Msa0771040:CDS |
| TTGGCCAGCTGTGTTTCCAG+GGG | 0.561804 | 5_2:+42990176 | Msa0771040:CDS |
| GCCGAATTTGGGCTAGAACT+GGG | 0.568515 | 5_2:+42990274 | Msa0771040:CDS |
| AAAGTTCAGAGAAAATAAAA+CGG | 0.577025 | 5_2:-42991103 | None:intergenic |
| GGCACCACATTAAAATGTGG+AGG | 0.580002 | 5_2:+42990345 | Msa0771040:CDS |
| ACTGATGAGTATTGTTGTAG+AGG | 0.583748 | 5_2:+42990603 | Msa0771040:CDS |
| GCACCACATTAAAATGTGGA+GGG | 0.588374 | 5_2:+42990346 | Msa0771040:CDS |
| GATCACAAACTTCATTGTAG+TGG | 0.593624 | 5_2:+42990947 | Msa0771040:CDS |
| TTTCCAGGGGAACATTTCAA+CGG | 0.596071 | 5_2:+42990189 | Msa0771040:CDS |
| AAGTCTAACGGAAAGACCGT+TGG | 0.602579 | 5_2:+42990552 | Msa0771040:CDS |
| ACCGCTCCAGTAAGTTGGAG+TGG | 0.605036 | 5_2:+42990252 | Msa0771040:CDS |
| CACCACATTAAAATGTGGAG+GGG | 0.610296 | 5_2:+42990347 | Msa0771040:CDS |
| GGAGGATTCGTCCTTAAACA+AGG | 0.613851 | 5_2:+42990213 | Msa0771040:CDS |
| AACTTTGACCAAAATGGAGA+CGG | 0.614713 | 5_2:+42990300 | Msa0771040:CDS |
| CGTCGTTGATTGGAAGCTGG+TGG | 0.618353 | 5_2:+42990984 | Msa0771040:CDS |
| CACCATAGTAAACTACTGCA+AGG | 0.626220 | 5_2:+42990146 | Msa0771040:CDS |
| ACTTACTGGAGCGGTGAACA+CGG | 0.633829 | 5_2:-42990244 | None:intergenic |
| CTGGTGGATAGCAATGATGA+TGG | 0.640894 | 5_2:+42991000 | Msa0771040:CDS |
| GCCACTCCAACTTACTGGAG+CGG | 0.645829 | 5_2:-42990253 | None:intergenic |
| TGCGGCACCACATTAAAATG+TGG | 0.646949 | 5_2:+42990342 | Msa0771040:CDS |
| TTATTCAAAGAAGTTTAAGG+AGG | 0.649542 | 5_2:+42990662 | Msa0771040:CDS |
| CCAGGGGAACATTTCAACGG+CGG | 0.654456 | 5_2:+42990192 | Msa0771040:CDS |
| ACAAGCGCTTCGACACCCAA+CGG | 0.656281 | 5_2:-42990568 | None:intergenic |
| GCACATTGAAGCCATCGACG+AGG | 0.703479 | 5_2:-42990434 | None:intergenic |
| TACTGGAGCGGTGAACACGG+AGG | 0.748549 | 5_2:-42990241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAATAAAAAATTAA+TGG | + | chr5_2:42991229-42991248 | Msa0771040:three_prime_UTR | 0.0% |
| !! | TAAATAAAATAAAAAATTAA+TGG | + | chr5_2:42991229-42991248 | Msa0771040:three_prime_UTR | 0.0% |
| !!! | ATTTTATTCAAAGAAGTTTA+AGG | + | chr5_2:42990659-42990678 | Msa0771040:CDS | 15.0% |
| !!! | TAATGGAATATTTTATTGAT+TGG | + | chr5_2:42990864-42990883 | Msa0771040:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | chr5_2:42991078-42991097 | Msa0771040:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTCTTTTTTGATTG+AGG | + | chr5_2:42991123-42991142 | Msa0771040:three_prime_UTR | 15.0% |
| !! | ATATATTGTTCTACATAAAA+AGG | + | chr5_2:42991146-42991165 | Msa0771040:three_prime_UTR | 15.0% |
| !!! | ATTTTATTCAAAGAAGTTTA+AGG | + | chr5_2:42990659-42990678 | Msa0771040:CDS | 15.0% |
| !!! | TAATGGAATATTTTATTGAT+TGG | + | chr5_2:42990864-42990883 | Msa0771040:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | chr5_2:42991078-42991097 | Msa0771040:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTCTTTTTTGATTG+AGG | + | chr5_2:42991123-42991142 | Msa0771040:three_prime_UTR | 15.0% |
| !! | ATATATTGTTCTACATAAAA+AGG | + | chr5_2:42991146-42991165 | Msa0771040:three_prime_UTR | 15.0% |
| !! | AATTATAACAATCACAGTTA+TGG | + | chr5_2:42989943-42989962 | Msa0771040:exon | 20.0% |
| !!! | AATACAAAAGAATTTGAGTT+TGG | - | chr5_2:42990044-42990063 | None:intergenic | 20.0% |
| !! | AACTTCTTTGAATAAAATGT+TGG | - | chr5_2:42990657-42990676 | None:intergenic | 20.0% |
| !!! | ACTTCTTTTATGTTTTGATT+TGG | + | chr5_2:42990892-42990911 | Msa0771040:intron | 20.0% |
| !! | AAAGTTCAGAGAAAATAAAA+CGG | - | chr5_2:42991106-42991125 | None:intergenic | 20.0% |
| !! | AATTATAACAATCACAGTTA+TGG | + | chr5_2:42989943-42989962 | Msa0771040:exon | 20.0% |
| !!! | AATACAAAAGAATTTGAGTT+TGG | - | chr5_2:42990044-42990063 | None:intergenic | 20.0% |
| !! | AACTTCTTTGAATAAAATGT+TGG | - | chr5_2:42990657-42990676 | None:intergenic | 20.0% |
| !!! | ACTTCTTTTATGTTTTGATT+TGG | + | chr5_2:42990892-42990911 | Msa0771040:intron | 20.0% |
| !! | AAAGTTCAGAGAAAATAAAA+CGG | - | chr5_2:42991106-42991125 | None:intergenic | 20.0% |
| !! | AATGATTTTACCAATCACAT+TGG | + | chr5_2:42989979-42989998 | Msa0771040:CDS | 25.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | chr5_2:42990001-42990020 | Msa0771040:CDS | 25.0% |
| ! | TGCTAAAAAAATTGTTGATG+AGG | + | chr5_2:42990088-42990107 | Msa0771040:intron | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | chr5_2:42990612-42990631 | Msa0771040:CDS | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | chr5_2:42990613-42990632 | Msa0771040:CDS | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | chr5_2:42990662-42990681 | Msa0771040:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | chr5_2:42990693-42990712 | None:intergenic | 25.0% |
| ! | TGTGAAAGTCAAAATGTTAA+TGG | + | chr5_2:42990847-42990866 | Msa0771040:intron | 25.0% |
| !! | AATGATTTTACCAATCACAT+TGG | + | chr5_2:42989979-42989998 | Msa0771040:CDS | 25.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | chr5_2:42990001-42990020 | Msa0771040:CDS | 25.0% |
| ! | TGCTAAAAAAATTGTTGATG+AGG | + | chr5_2:42990088-42990107 | Msa0771040:intron | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | chr5_2:42990612-42990631 | Msa0771040:CDS | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | chr5_2:42990613-42990632 | Msa0771040:CDS | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | chr5_2:42990662-42990681 | Msa0771040:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | chr5_2:42990693-42990712 | None:intergenic | 25.0% |
| ! | TGTGAAAGTCAAAATGTTAA+TGG | + | chr5_2:42990847-42990866 | Msa0771040:intron | 25.0% |
| ! | AAAAAATTGTTGATGAGGAC+AGG | + | chr5_2:42990093-42990112 | Msa0771040:intron | 30.0% |
| ! | AAAAATTGTTGATGAGGACA+GGG | + | chr5_2:42990094-42990113 | Msa0771040:intron | 30.0% |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | chr5_2:42990459-42990478 | None:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | chr5_2:42990459-42990478 | Msa0771040:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | chr5_2:42990474-42990493 | None:intergenic | 30.0% |
| !! | ATGTTGGTTTACAAGTAGAA+GGG | - | chr5_2:42990641-42990660 | None:intergenic | 30.0% |
| !! | AATGTTGGTTTACAAGTAGA+AGG | - | chr5_2:42990642-42990661 | None:intergenic | 30.0% |
| !!! | AAACGACACTCGTTTTAAAA+CGG | + | chr5_2:42990798-42990817 | Msa0771040:intron | 30.0% |
| !!! | TATGTTTTGATTTGGACTTC+AGG | + | chr5_2:42990900-42990919 | Msa0771040:intron | 30.0% |
| TACAATGAAGTTTGTGATCA+TGG | - | chr5_2:42990946-42990965 | None:intergenic | 30.0% | |
| ! | AAAAAATTGTTGATGAGGAC+AGG | + | chr5_2:42990093-42990112 | Msa0771040:intron | 30.0% |
| ! | AAAAATTGTTGATGAGGACA+GGG | + | chr5_2:42990094-42990113 | Msa0771040:intron | 30.0% |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | chr5_2:42990459-42990478 | None:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | chr5_2:42990459-42990478 | Msa0771040:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | chr5_2:42990474-42990493 | None:intergenic | 30.0% |
| !! | ATGTTGGTTTACAAGTAGAA+GGG | - | chr5_2:42990641-42990660 | None:intergenic | 30.0% |
| !! | AATGTTGGTTTACAAGTAGA+AGG | - | chr5_2:42990642-42990661 | None:intergenic | 30.0% |
| !!! | AAACGACACTCGTTTTAAAA+CGG | + | chr5_2:42990798-42990817 | Msa0771040:intron | 30.0% |
| !!! | TATGTTTTGATTTGGACTTC+AGG | + | chr5_2:42990900-42990919 | Msa0771040:intron | 30.0% |
| TACAATGAAGTTTGTGATCA+TGG | - | chr5_2:42990946-42990965 | None:intergenic | 30.0% | |
| ATTGCAAGAACCAATGTGAT+TGG | - | chr5_2:42989992-42990011 | None:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | chr5_2:42990300-42990319 | Msa0771040:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | chr5_2:42990460-42990479 | None:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | chr5_2:42990521-42990540 | None:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | chr5_2:42990537-42990556 | None:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | chr5_2:42990538-42990557 | None:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | chr5_2:42990540-42990559 | Msa0771040:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | chr5_2:42990603-42990622 | Msa0771040:CDS | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | chr5_2:42990723-42990742 | None:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | chr5_2:42990723-42990742 | Msa0771040:CDS | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | chr5_2:42990947-42990966 | Msa0771040:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | chr5_2:42991028-42991047 | Msa0771040:exon | 35.0% |
| ATTGCAAGAACCAATGTGAT+TGG | - | chr5_2:42989992-42990011 | None:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | chr5_2:42990300-42990319 | Msa0771040:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | chr5_2:42990460-42990479 | None:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | chr5_2:42990521-42990540 | None:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | chr5_2:42990537-42990556 | None:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | chr5_2:42990538-42990557 | None:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | chr5_2:42990540-42990559 | Msa0771040:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | chr5_2:42990603-42990622 | Msa0771040:CDS | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | chr5_2:42990723-42990742 | None:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | chr5_2:42990723-42990742 | Msa0771040:CDS | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | chr5_2:42990947-42990966 | Msa0771040:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | chr5_2:42991028-42991047 | Msa0771040:exon | 35.0% |
| CACCATAGTAAACTACTGCA+AGG | + | chr5_2:42990146-42990165 | Msa0771040:CDS | 40.0% | |
| CTCCTTGCAGTAGTTTACTA+TGG | - | chr5_2:42990151-42990170 | None:intergenic | 40.0% | |
| TTTCCAGGGGAACATTTCAA+CGG | + | chr5_2:42990189-42990208 | Msa0771040:CDS | 40.0% | |
| GCACCACATTAAAATGTGGA+GGG | + | chr5_2:42990346-42990365 | Msa0771040:CDS | 40.0% | |
| CACCACATTAAAATGTGGAG+GGG | + | chr5_2:42990347-42990366 | Msa0771040:CDS | 40.0% | |
| AGGCTAACATCGTAGAAATC+GGG | - | chr5_2:42990417-42990436 | None:intergenic | 40.0% | |
| GAGGCTAACATCGTAGAAAT+CGG | - | chr5_2:42990418-42990437 | None:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | chr5_2:42990465-42990484 | Msa0771040:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | chr5_2:42990483-42990502 | Msa0771040:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | chr5_2:42990550-42990569 | None:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | chr5_2:42990728-42990747 | Msa0771040:CDS | 40.0% |
| !!! | GACACTCGTTTTAAAACGGA+TGG | + | chr5_2:42990802-42990821 | Msa0771040:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | chr5_2:42990956-42990975 | Msa0771040:CDS | 40.0% |
| CACCATAGTAAACTACTGCA+AGG | + | chr5_2:42990146-42990165 | Msa0771040:CDS | 40.0% | |
| CTCCTTGCAGTAGTTTACTA+TGG | - | chr5_2:42990151-42990170 | None:intergenic | 40.0% | |
| TTTCCAGGGGAACATTTCAA+CGG | + | chr5_2:42990189-42990208 | Msa0771040:CDS | 40.0% | |
| GCACCACATTAAAATGTGGA+GGG | + | chr5_2:42990346-42990365 | Msa0771040:CDS | 40.0% | |
| CACCACATTAAAATGTGGAG+GGG | + | chr5_2:42990347-42990366 | Msa0771040:CDS | 40.0% | |
| AGGCTAACATCGTAGAAATC+GGG | - | chr5_2:42990417-42990436 | None:intergenic | 40.0% | |
| GAGGCTAACATCGTAGAAAT+CGG | - | chr5_2:42990418-42990437 | None:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | chr5_2:42990465-42990484 | Msa0771040:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | chr5_2:42990483-42990502 | Msa0771040:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | chr5_2:42990550-42990569 | None:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | chr5_2:42990728-42990747 | Msa0771040:CDS | 40.0% |
| !!! | GACACTCGTTTTAAAACGGA+TGG | + | chr5_2:42990802-42990821 | Msa0771040:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | chr5_2:42990956-42990975 | Msa0771040:CDS | 40.0% |
| ACTACTGCAAGGAGACTCTT+TGG | + | chr5_2:42990157-42990176 | Msa0771040:CDS | 45.0% | |
| GGAGGATTCGTCCTTAAACA+AGG | + | chr5_2:42990213-42990232 | Msa0771040:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | chr5_2:42990227-42990246 | None:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | chr5_2:42990262-42990281 | Msa0771040:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | chr5_2:42990263-42990282 | Msa0771040:CDS | 45.0% | |
| ! | ACCCAGTTCTAGCCCAAATT+CGG | - | chr5_2:42990278-42990297 | None:intergenic | 45.0% |
| GGGTGCAACTTTGACCAAAA+TGG | + | chr5_2:42990294-42990313 | Msa0771040:CDS | 45.0% | |
| TGCGGCACCACATTAAAATG+TGG | + | chr5_2:42990342-42990361 | Msa0771040:CDS | 45.0% | |
| GGCACCACATTAAAATGTGG+AGG | + | chr5_2:42990345-42990364 | Msa0771040:CDS | 45.0% | |
| !! | TGCCCCTCCACATTTTAATG+TGG | - | chr5_2:42990352-42990371 | None:intergenic | 45.0% |
| ACATTAAAATGTGGAGGGGC+AGG | + | chr5_2:42990351-42990370 | Msa0771040:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | chr5_2:42990552-42990571 | Msa0771040:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | chr5_2:42990553-42990572 | Msa0771040:CDS | 45.0% | |
| AGCAACAACGTAATCCGTTC+CGG | - | chr5_2:42990745-42990764 | None:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTGTGCTGAC+AGG | + | chr5_2:42990757-42990776 | Msa0771040:CDS | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | chr5_2:42991000-42991019 | Msa0771040:CDS | 45.0% |
| ACTACTGCAAGGAGACTCTT+TGG | + | chr5_2:42990157-42990176 | Msa0771040:CDS | 45.0% | |
| GGAGGATTCGTCCTTAAACA+AGG | + | chr5_2:42990213-42990232 | Msa0771040:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | chr5_2:42990227-42990246 | None:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | chr5_2:42990262-42990281 | Msa0771040:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | chr5_2:42990263-42990282 | Msa0771040:CDS | 45.0% | |
| ! | ACCCAGTTCTAGCCCAAATT+CGG | - | chr5_2:42990278-42990297 | None:intergenic | 45.0% |
| GGGTGCAACTTTGACCAAAA+TGG | + | chr5_2:42990294-42990313 | Msa0771040:CDS | 45.0% | |
| TGCGGCACCACATTAAAATG+TGG | + | chr5_2:42990342-42990361 | Msa0771040:CDS | 45.0% | |
| GGCACCACATTAAAATGTGG+AGG | + | chr5_2:42990345-42990364 | Msa0771040:CDS | 45.0% | |
| !! | TGCCCCTCCACATTTTAATG+TGG | - | chr5_2:42990352-42990371 | None:intergenic | 45.0% |
| ACATTAAAATGTGGAGGGGC+AGG | + | chr5_2:42990351-42990370 | Msa0771040:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | chr5_2:42990552-42990571 | Msa0771040:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | chr5_2:42990553-42990572 | Msa0771040:CDS | 45.0% | |
| AGCAACAACGTAATCCGTTC+CGG | - | chr5_2:42990745-42990764 | None:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTGTGCTGAC+AGG | + | chr5_2:42990757-42990776 | Msa0771040:CDS | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | chr5_2:42991000-42991019 | Msa0771040:CDS | 45.0% |
| TTTGGCCAGCTGTGTTTCCA+GGG | + | chr5_2:42990175-42990194 | Msa0771040:CDS | 50.0% | |
| ACTTACTGGAGCGGTGAACA+CGG | - | chr5_2:42990247-42990266 | None:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | chr5_2:42990247-42990266 | Msa0771040:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | chr5_2:42990261-42990280 | None:intergenic | 50.0% | |
| ! | GCCGAATTTGGGCTAGAACT+GGG | + | chr5_2:42990274-42990293 | Msa0771040:CDS | 50.0% |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | chr5_2:42990311-42990330 | None:intergenic | 50.0% |
| ! | TACGATGTTAGCCTCGTCGA+TGG | + | chr5_2:42990423-42990442 | Msa0771040:CDS | 50.0% |
| CAAGGCTTGACGTCGTTGAT+TGG | + | chr5_2:42990974-42990993 | Msa0771040:CDS | 50.0% | |
| ! | TGACGTCGTTGATTGGAAGC+TGG | + | chr5_2:42990981-42991000 | Msa0771040:CDS | 50.0% |
| TTTGGCCAGCTGTGTTTCCA+GGG | + | chr5_2:42990175-42990194 | Msa0771040:CDS | 50.0% | |
| ACTTACTGGAGCGGTGAACA+CGG | - | chr5_2:42990247-42990266 | None:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | chr5_2:42990247-42990266 | Msa0771040:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | chr5_2:42990261-42990280 | None:intergenic | 50.0% | |
| ! | GCCGAATTTGGGCTAGAACT+GGG | + | chr5_2:42990274-42990293 | Msa0771040:CDS | 50.0% |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | chr5_2:42990311-42990330 | None:intergenic | 50.0% |
| ! | TACGATGTTAGCCTCGTCGA+TGG | + | chr5_2:42990423-42990442 | Msa0771040:CDS | 50.0% |
| CAAGGCTTGACGTCGTTGAT+TGG | + | chr5_2:42990974-42990993 | Msa0771040:CDS | 50.0% | |
| ! | TGACGTCGTTGATTGGAAGC+TGG | + | chr5_2:42990981-42991000 | Msa0771040:CDS | 50.0% |
| CTTTGGCCAGCTGTGTTTCC+AGG | + | chr5_2:42990174-42990193 | Msa0771040:CDS | 55.0% | |
| TTGGCCAGCTGTGTTTCCAG+GGG | + | chr5_2:42990176-42990195 | Msa0771040:CDS | 55.0% | |
| TGTTCCCCTGGAAACACAGC+TGG | - | chr5_2:42990183-42990202 | None:intergenic | 55.0% | |
| CCAGGGGAACATTTCAACGG+CGG | + | chr5_2:42990192-42990211 | Msa0771040:CDS | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | chr5_2:42990252-42990271 | Msa0771040:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | chr5_2:42990256-42990275 | None:intergenic | 55.0% | |
| ! | GGCCGAATTTGGGCTAGAAC+TGG | + | chr5_2:42990273-42990292 | Msa0771040:CDS | 55.0% |
| GGAGACGGACAATGCCAAAC+CGG | + | chr5_2:42990315-42990334 | Msa0771040:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | chr5_2:42990324-42990343 | Msa0771040:CDS | 55.0% | |
| !! | TAATGTGGTGCCGCATGCAC+CGG | - | chr5_2:42990337-42990356 | None:intergenic | 55.0% |
| TGGAGGGGCAGGAAAAACTC+CGG | + | chr5_2:42990362-42990381 | Msa0771040:CDS | 55.0% | |
| GTGAATTCAGCGAGCGATGC+CGG | - | chr5_2:42990384-42990403 | None:intergenic | 55.0% | |
| GCACATTGAAGCCATCGACG+AGG | - | chr5_2:42990437-42990456 | None:intergenic | 55.0% | |
| ACAAGCGCTTCGACACCCAA+CGG | - | chr5_2:42990571-42990590 | None:intergenic | 55.0% | |
| ! | CGTCGTTGATTGGAAGCTGG+TGG | + | chr5_2:42990984-42991003 | Msa0771040:CDS | 55.0% |
| CTTTGGCCAGCTGTGTTTCC+AGG | + | chr5_2:42990174-42990193 | Msa0771040:CDS | 55.0% | |
| TTGGCCAGCTGTGTTTCCAG+GGG | + | chr5_2:42990176-42990195 | Msa0771040:CDS | 55.0% | |
| TGTTCCCCTGGAAACACAGC+TGG | - | chr5_2:42990183-42990202 | None:intergenic | 55.0% | |
| CCAGGGGAACATTTCAACGG+CGG | + | chr5_2:42990192-42990211 | Msa0771040:CDS | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | chr5_2:42990252-42990271 | Msa0771040:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | chr5_2:42990256-42990275 | None:intergenic | 55.0% | |
| ! | GGCCGAATTTGGGCTAGAAC+TGG | + | chr5_2:42990273-42990292 | Msa0771040:CDS | 55.0% |
| GGAGACGGACAATGCCAAAC+CGG | + | chr5_2:42990315-42990334 | Msa0771040:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | chr5_2:42990324-42990343 | Msa0771040:CDS | 55.0% | |
| !! | TAATGTGGTGCCGCATGCAC+CGG | - | chr5_2:42990337-42990356 | None:intergenic | 55.0% |
| TGGAGGGGCAGGAAAAACTC+CGG | + | chr5_2:42990362-42990381 | Msa0771040:CDS | 55.0% | |
| GTGAATTCAGCGAGCGATGC+CGG | - | chr5_2:42990384-42990403 | None:intergenic | 55.0% | |
| GCACATTGAAGCCATCGACG+AGG | - | chr5_2:42990437-42990456 | None:intergenic | 55.0% | |
| ACAAGCGCTTCGACACCCAA+CGG | - | chr5_2:42990571-42990590 | None:intergenic | 55.0% | |
| ! | CGTCGTTGATTGGAAGCTGG+TGG | + | chr5_2:42990984-42991003 | Msa0771040:CDS | 55.0% |
| CCGCCGTTGAAATGTTCCCC+TGG | - | chr5_2:42990195-42990214 | None:intergenic | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | chr5_2:42990195-42990214 | Msa0771040:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | chr5_2:42990244-42990263 | None:intergenic | 60.0% | |
| CCGCCGTTGAAATGTTCCCC+TGG | - | chr5_2:42990195-42990214 | None:intergenic | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | chr5_2:42990195-42990214 | Msa0771040:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | chr5_2:42990244-42990263 | None:intergenic | 60.0% | |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | chr5_2:42990332-42990351 | None:intergenic | 65.0% |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | chr5_2:42990332-42990351 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 42989943 | 42991259 | 42989943 | ID=Msa0771040;Name=Msa0771040 |
| chr5_2 | mRNA | 42989943 | 42991259 | 42989943 | ID=Msa0771040-mRNA-1;Parent=Msa0771040;Name=Msa0771040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=19|1|1|1|1|1|3|214|282 |
| chr5_2 | exon | 42989943 | 42990022 | 42989943 | ID=Msa0771040-mRNA-1:exon:13286;Parent=Msa0771040-mRNA-1 |
| chr5_2 | exon | 42990115 | 42990778 | 42990115 | ID=Msa0771040-mRNA-1:exon:13287;Parent=Msa0771040-mRNA-1 |
| chr5_2 | exon | 42990922 | 42991259 | 42990922 | ID=Msa0771040-mRNA-1:exon:13288;Parent=Msa0771040-mRNA-1 |
| chr5_2 | five_prime_UTR | 42989943 | 42989961 | 42989943 | ID=Msa0771040-mRNA-1:five_prime_utr;Parent=Msa0771040-mRNA-1 |
| chr5_2 | CDS | 42989962 | 42990022 | 42989962 | ID=Msa0771040-mRNA-1:cds;Parent=Msa0771040-mRNA-1 |
| chr5_2 | CDS | 42990115 | 42990778 | 42990115 | ID=Msa0771040-mRNA-1:cds;Parent=Msa0771040-mRNA-1 |
| chr5_2 | CDS | 42990922 | 42991045 | 42990922 | ID=Msa0771040-mRNA-1:cds;Parent=Msa0771040-mRNA-1 |
| chr5_2 | three_prime_UTR | 42991046 | 42991259 | 42991046 | ID=Msa0771040-mRNA-1:three_prime_utr;Parent=Msa0771040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
