Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356350 | XP_003614785.1 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356350 | sp|Q5DWG1|CRJ35_CRYJA | 54.310 | 232 | 100 | 3 | 12 | 239 | 8 | 237 | 2.35e-84 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356350 | G7K8X4 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1356350 | 0.848326 | 6.581228e-60 | -8.615850e-47 |
| Msa0064120 | Msa1356350 | 0.825622 | 4.238735e-54 | -8.615850e-47 |
| Msa0108880 | Msa1356350 | 0.831439 | 1.668471e-55 | -8.615850e-47 |
| Msa1356350 | Msa1429860 | 0.811166 | 8.021127e-51 | -8.615850e-47 |
| Msa1356350 | Msa1435630 | 0.815732 | 7.951202e-52 | -8.615850e-47 |
| Msa0609300 | Msa1356350 | 0.822924 | 1.826062e-53 | -8.615850e-47 |
| Msa0691910 | Msa1356350 | 0.821974 | 3.035658e-53 | -8.615850e-47 |
| Msa0736440 | Msa1356350 | 0.825152 | 5.477728e-54 | -8.615850e-47 |
| Msa0740090 | Msa1356350 | 0.831363 | 1.742167e-55 | -8.615850e-47 |
| Msa0771040 | Msa1356350 | 0.902190 | 1.248665e-78 | -8.615850e-47 |
| Msa0820380 | Msa1356350 | 0.821296 | 4.354443e-53 | -8.615850e-47 |
| Msa0155180 | Msa1356350 | 0.849861 | 2.463158e-60 | -8.615850e-47 |
| Msa0382530 | Msa1356350 | 0.817733 | 2.829500e-52 | -8.615850e-47 |
| Msa0432320 | Msa1356350 | 0.821771 | 3.381167e-53 | -8.615850e-47 |
| Msa0451170 | Msa1356350 | 0.801805 | 7.570682e-49 | -8.615850e-47 |
| Msa1014320 | Msa1356350 | 0.810210 | 1.291060e-50 | -8.615850e-47 |
| Msa0359010 | Msa1356350 | 0.806993 | 6.279434e-50 | -8.615850e-47 |
| Msa0525210 | Msa1356350 | 0.820222 | 7.685976e-53 | -8.615850e-47 |
| Msa0849650 | Msa1356350 | 0.998161 | 1.244090e-257 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356350 | MtrunA17_Chr5g0424221 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| Msa1356350 | MtrunA17_Chr8g0351851 | 52.055 | 219 | 98 | 4 | 28 | 239 | 19 | 237 | 8.79e-77 | 233 |
| Msa1356350 | MtrunA17_Chr8g0392961 | 54.338 | 219 | 93 | 4 | 33 | 244 | 31 | 249 | 1.13e-76 | 233 |
| Msa1356350 | MtrunA17_Chr6g0482741 | 49.372 | 239 | 114 | 4 | 8 | 239 | 1 | 239 | 4.09e-75 | 229 |
| Msa1356350 | MtrunA17_Chr1g0154591 | 51.570 | 223 | 100 | 2 | 27 | 241 | 11 | 233 | 5.45e-74 | 226 |
| Msa1356350 | MtrunA17_Chr8g0371771 | 50.000 | 232 | 108 | 5 | 13 | 239 | 15 | 243 | 2.24e-73 | 227 |
| Msa1356350 | MtrunA17_Chr8g0371781 | 49.785 | 233 | 102 | 5 | 27 | 244 | 26 | 258 | 1.19e-71 | 223 |
| Msa1356350 | MtrunA17_Chr8g0357311 | 48.305 | 236 | 112 | 5 | 14 | 239 | 11 | 246 | 2.21e-71 | 220 |
| Msa1356350 | MtrunA17_Chr3g0141341 | 50.679 | 221 | 101 | 3 | 27 | 239 | 10 | 230 | 7.30e-71 | 218 |
| Msa1356350 | MtrunA17_Chr4g0037331 | 51.818 | 220 | 96 | 6 | 27 | 239 | 23 | 239 | 9.30e-71 | 221 |
| Msa1356350 | MtrunA17_Chr5g0405611 | 49.351 | 231 | 108 | 5 | 13 | 239 | 82 | 307 | 1.38e-70 | 222 |
| Msa1356350 | MtrunA17_Chr8g0352471 | 47.107 | 242 | 118 | 5 | 14 | 245 | 11 | 252 | 1.47e-70 | 220 |
| Msa1356350 | MtrunA17_Chr3g0112091 | 45.228 | 241 | 118 | 5 | 8 | 239 | 1 | 236 | 1.14e-69 | 215 |
| Msa1356350 | MtrunA17_Chr5g0428801 | 47.826 | 230 | 107 | 5 | 28 | 244 | 25 | 254 | 1.55e-69 | 217 |
| Msa1356350 | MtrunA17_Chr5g0405581 | 47.036 | 253 | 117 | 8 | 1 | 239 | 1 | 250 | 1.92e-68 | 214 |
| Msa1356350 | MtrunA17_Chr1g0156711 | 48.996 | 249 | 110 | 10 | 4 | 240 | 3 | 246 | 4.31e-67 | 211 |
| Msa1356350 | MtrunA17_Chr7g0239131 | 46.544 | 217 | 108 | 3 | 31 | 239 | 25 | 241 | 1.76e-66 | 207 |
| Msa1356350 | MtrunA17_Chr6g0452331 | 44.400 | 250 | 118 | 8 | 4 | 239 | 9 | 251 | 2.14e-64 | 203 |
| Msa1356350 | MtrunA17_Chr3g0142781 | 46.341 | 246 | 120 | 8 | 6 | 239 | 3 | 248 | 8.21e-63 | 201 |
| Msa1356350 | MtrunA17_Chr1g0180121 | 47.248 | 218 | 104 | 7 | 32 | 239 | 25 | 241 | 1.51e-59 | 189 |
| Msa1356350 | MtrunA17_Chr1g0180161 | 47.748 | 222 | 105 | 7 | 32 | 243 | 25 | 245 | 1.57e-59 | 190 |
| Msa1356350 | MtrunA17_Chr4g0037351 | 43.825 | 251 | 125 | 7 | 1 | 239 | 1 | 247 | 1.69e-58 | 189 |
| Msa1356350 | MtrunA17_Chr2g0311561 | 44.105 | 229 | 118 | 6 | 27 | 245 | 9 | 237 | 2.23e-58 | 188 |
| Msa1356350 | MtrunA17_Chr2g0312181 | 42.972 | 249 | 125 | 8 | 1 | 239 | 1 | 242 | 2.31e-58 | 186 |
| Msa1356350 | MtrunA17_Chr2g0311521 | 43.902 | 246 | 125 | 7 | 7 | 239 | 1 | 246 | 4.47e-58 | 199 |
| Msa1356350 | MtrunA17_Chr4g0031221 | 44.444 | 225 | 111 | 8 | 28 | 239 | 28 | 251 | 8.63e-58 | 185 |
| Msa1356350 | MtrunA17_Chr2g0311551 | 43.830 | 235 | 114 | 6 | 15 | 239 | 17 | 243 | 1.06e-57 | 199 |
| Msa1356350 | MtrunA17_Chr1g0179851 | 47.248 | 218 | 104 | 7 | 32 | 239 | 22 | 238 | 1.30e-57 | 184 |
| Msa1356350 | MtrunA17_Chr1g0180231 | 46.330 | 218 | 106 | 7 | 32 | 239 | 25 | 241 | 1.43e-56 | 182 |
| Msa1356350 | MtrunA17_Chr1g0179871 | 46.330 | 218 | 106 | 7 | 32 | 239 | 25 | 241 | 1.43e-56 | 182 |
| Msa1356350 | MtrunA17_Chr1g0179891 | 42.857 | 245 | 121 | 9 | 5 | 239 | 1 | 236 | 1.86e-56 | 181 |
| Msa1356350 | MtrunA17_Chr7g0265011 | 40.650 | 246 | 135 | 7 | 4 | 239 | 42 | 286 | 5.82e-56 | 182 |
| Msa1356350 | MtrunA17_Chr1g0180221 | 45.872 | 218 | 107 | 7 | 32 | 239 | 65 | 281 | 1.13e-55 | 181 |
| Msa1356350 | MtrunA17_Chr5g0397821 | 46.544 | 217 | 96 | 7 | 28 | 239 | 23 | 224 | 3.52e-53 | 173 |
| Msa1356350 | MtrunA17_Chr8g0386341 | 42.562 | 242 | 116 | 8 | 3 | 239 | 24 | 247 | 4.83e-52 | 170 |
| Msa1356350 | MtrunA17_Chr5g0397831 | 42.063 | 252 | 116 | 9 | 1 | 239 | 1 | 235 | 9.03e-51 | 167 |
| Msa1356350 | MtrunA17_Chr2g0311531 | 42.523 | 214 | 97 | 7 | 31 | 239 | 29 | 221 | 2.92e-44 | 150 |
| Msa1356350 | MtrunA17_Chr2g0311501 | 40.884 | 181 | 97 | 7 | 68 | 239 | 2 | 181 | 5.08e-39 | 135 |
| Msa1356350 | MtrunA17_Chr5g0406771 | 42.236 | 161 | 81 | 6 | 31 | 179 | 15 | 175 | 1.16e-33 | 120 |
| Msa1356350 | MtrunA17_Chr2g0309611 | 30.488 | 246 | 153 | 9 | 7 | 238 | 8 | 249 | 6.68e-31 | 115 |
| Msa1356350 | MtrunA17_Chr1g0179911 | 31.174 | 247 | 142 | 9 | 5 | 239 | 7 | 237 | 7.63e-31 | 115 |
| Msa1356350 | MtrunA17_Chr8g0386351 | 37.989 | 179 | 98 | 5 | 1 | 175 | 37 | 206 | 3.25e-28 | 107 |
| Msa1356350 | MtrunA17_Chr1g0180181 | 49.412 | 85 | 41 | 2 | 161 | 243 | 18 | 102 | 8.73e-20 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356350 | AT1G77700.2 | 67.164 | 268 | 87 | 1 | 1 | 267 | 33 | 300 | 6.51e-135 | 384 |
| Msa1356350 | AT1G77700.3 | 67.769 | 242 | 78 | 0 | 1 | 242 | 33 | 274 | 7.77e-124 | 357 |
| Msa1356350 | AT1G77700.1 | 62.879 | 264 | 94 | 2 | 20 | 280 | 80 | 342 | 2.31e-120 | 348 |
| Msa1356350 | AT1G75050.1 | 49.167 | 240 | 115 | 3 | 11 | 243 | 7 | 246 | 5.90e-79 | 239 |
| Msa1356350 | AT1G19320.1 | 50.000 | 238 | 109 | 3 | 13 | 240 | 10 | 247 | 6.16e-79 | 239 |
| Msa1356350 | AT1G75030.1 | 51.046 | 239 | 107 | 4 | 13 | 243 | 10 | 246 | 2.65e-78 | 238 |
| Msa1356350 | AT1G75040.1 | 49.383 | 243 | 108 | 4 | 2 | 239 | 6 | 238 | 8.28e-77 | 234 |
| Msa1356350 | AT1G18250.1 | 53.125 | 224 | 98 | 5 | 27 | 243 | 19 | 242 | 5.93e-76 | 232 |
| Msa1356350 | AT1G18250.2 | 52.444 | 225 | 100 | 5 | 26 | 243 | 19 | 243 | 1.24e-75 | 231 |
| Msa1356350 | AT1G73620.1 | 51.556 | 225 | 102 | 4 | 27 | 244 | 40 | 264 | 3.75e-73 | 225 |
| Msa1356350 | AT4G38660.1 | 44.610 | 269 | 134 | 7 | 9 | 268 | 13 | 275 | 1.33e-69 | 219 |
| Msa1356350 | AT5G24620.1 | 45.600 | 250 | 121 | 5 | 11 | 245 | 7 | 256 | 2.91e-69 | 220 |
| Msa1356350 | AT4G38660.2 | 46.774 | 248 | 120 | 6 | 30 | 268 | 9 | 253 | 3.54e-69 | 217 |
| Msa1356350 | AT5G24620.4 | 45.600 | 250 | 121 | 5 | 11 | 245 | 62 | 311 | 3.60e-69 | 222 |
| Msa1356350 | AT5G24620.3 | 45.600 | 250 | 121 | 5 | 11 | 245 | 83 | 332 | 4.69e-69 | 222 |
| Msa1356350 | AT1G75800.1 | 46.212 | 264 | 120 | 9 | 7 | 252 | 1 | 260 | 2.34e-67 | 213 |
| Msa1356350 | AT4G24180.6 | 48.387 | 248 | 106 | 9 | 7 | 239 | 15 | 255 | 3.65e-66 | 207 |
| Msa1356350 | AT4G24180.1 | 47.638 | 254 | 111 | 9 | 7 | 245 | 15 | 261 | 4.68e-66 | 209 |
| Msa1356350 | AT4G24180.2 | 50.216 | 231 | 97 | 8 | 30 | 245 | 29 | 256 | 8.72e-66 | 208 |
| Msa1356350 | AT4G24180.5 | 51.111 | 225 | 92 | 8 | 30 | 239 | 29 | 250 | 9.36e-66 | 206 |
| Msa1356350 | AT2G17860.1 | 47.210 | 233 | 108 | 7 | 27 | 244 | 21 | 253 | 6.05e-65 | 204 |
| Msa1356350 | AT1G20030.1 | 47.280 | 239 | 112 | 8 | 28 | 252 | 2 | 240 | 6.51e-64 | 203 |
| Msa1356350 | AT4G36010.1 | 47.881 | 236 | 107 | 7 | 27 | 246 | 21 | 256 | 6.68e-64 | 203 |
| Msa1356350 | AT4G36010.2 | 47.881 | 236 | 107 | 7 | 27 | 246 | 21 | 256 | 6.68e-64 | 203 |
| Msa1356350 | AT1G20030.2 | 47.280 | 239 | 112 | 8 | 28 | 252 | 19 | 257 | 7.45e-64 | 203 |
| Msa1356350 | AT5G40020.1 | 42.400 | 250 | 130 | 7 | 1 | 239 | 1 | 247 | 1.12e-63 | 201 |
| Msa1356350 | AT5G02140.2 | 45.249 | 221 | 112 | 4 | 31 | 242 | 23 | 243 | 9.75e-63 | 198 |
| Msa1356350 | AT5G02140.1 | 45.249 | 221 | 112 | 4 | 31 | 242 | 23 | 243 | 1.19e-62 | 199 |
| Msa1356350 | AT4G38670.3 | 47.297 | 222 | 104 | 8 | 31 | 239 | 25 | 246 | 2.92e-59 | 190 |
| Msa1356350 | AT4G38670.1 | 47.297 | 222 | 104 | 8 | 31 | 239 | 25 | 246 | 2.92e-59 | 190 |
| Msa1356350 | AT2G28790.2 | 43.443 | 244 | 124 | 9 | 9 | 239 | 31 | 273 | 3.87e-59 | 190 |
| Msa1356350 | AT2G28790.1 | 43.443 | 244 | 124 | 9 | 9 | 239 | 6 | 248 | 5.63e-59 | 189 |
| Msa1356350 | AT4G38670.2 | 47.297 | 222 | 104 | 8 | 31 | 239 | 9 | 230 | 8.76e-59 | 189 |
| Msa1356350 | AT4G24180.3 | 47.436 | 234 | 101 | 9 | 7 | 225 | 15 | 241 | 3.00e-58 | 189 |
| Msa1356350 | AT4G24180.4 | 50.718 | 209 | 85 | 8 | 32 | 225 | 31 | 236 | 4.53e-58 | 189 |
| Msa1356350 | AT4G11650.1 | 43.103 | 232 | 111 | 7 | 27 | 254 | 21 | 235 | 1.40e-52 | 172 |
| Msa1356350 | AT5G38280.1 | 41.202 | 233 | 123 | 8 | 28 | 246 | 24 | 256 | 8.50e-51 | 177 |
| Msa1356350 | AT5G38280.2 | 41.202 | 233 | 123 | 8 | 28 | 246 | 24 | 256 | 1.06e-50 | 177 |
| Msa1356350 | AT4G18253.1 | 39.013 | 223 | 127 | 5 | 27 | 243 | 22 | 241 | 5.00e-48 | 160 |
| Msa1356350 | AT4G36000.2 | 54.545 | 143 | 55 | 4 | 101 | 239 | 1 | 137 | 3.62e-47 | 157 |
| Msa1356350 | AT4G36000.1 | 54.545 | 143 | 55 | 4 | 101 | 239 | 1 | 137 | 3.62e-47 | 157 |
| Msa1356350 | AT1G70250.1 | 38.667 | 225 | 123 | 7 | 28 | 239 | 144 | 366 | 3.81e-42 | 154 |
| Msa1356350 | AT4G18250.1 | 39.916 | 238 | 130 | 8 | 10 | 239 | 39 | 271 | 5.53e-42 | 153 |
| Msa1356350 | AT5G24620.2 | 48.800 | 125 | 57 | 2 | 128 | 245 | 15 | 139 | 4.42e-36 | 131 |
| Msa1356350 | AT2G24810.1 | 56.410 | 78 | 34 | 0 | 163 | 240 | 116 | 193 | 3.01e-24 | 97.1 |
Find 78 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAGGATTGTCCTTGTTTA+AGG | 0.171240 | tig0015626:-21541 | Msa1356350:intergenic |
| TATTGTTGTAGAGGAAATTT+TGG | 0.182203 | tig0015626:+21929 | Msa1356350:CDS |
| TAAGTTGGAGTGGCCGAATT+TGG | 0.220125 | tig0015626:+21579 | Msa1356350:CDS |
| CTTTGGCCAGCTGTGTTTCC+CGG | 0.242405 | tig0015626:+21491 | Msa1356350:CDS |
| CTTTGGGACAAGTTAATCTT+AGG | 0.252225 | tig0015626:-21835 | Msa1356350:intergenic |
| AGACTTAACGGAAAGTTCTT+TGG | 0.271584 | tig0015626:-21852 | Msa1356350:intergenic |
| GGCATTGTCCGTCTCCATTT+TGG | 0.275296 | tig0015626:-21625 | Msa1356350:intergenic |
| ATATATTGTTCTACATAAAA+AGG | 0.319988 | tig0015626:+22462 | Msa1356350:three_prime_UTR |
| ATTCGGCCACTCCAACTTAC+TGG | 0.329779 | tig0015626:-21575 | Msa1356350:intergenic |
| GTTTATCGGCTTAACAGAAA+TGG | 0.331307 | tig0015626:-21774 | Msa1356350:intergenic |
| GGGTGCAACTTTGACCAAAA+TGG | 0.342466 | tig0015626:+21611 | Msa1356350:CDS |
| CTCCTTGCAATAGTTTACTA+TGG | 0.349337 | tig0015626:-21465 | Msa1356350:intergenic |
| AATGTTGGTTTACAAGTAGA+AGG | 0.354055 | tig0015626:-21956 | Msa1356350:intergenic |
| ACTATTGCAAGGAGACTCTT+TGG | 0.364386 | tig0015626:+21474 | Msa1356350:CDS |
| GACTTAACGGAAAGTTCTTT+GGG | 0.366979 | tig0015626:-21851 | Msa1356350:intergenic |
| GGCCGAATTTGGGCTAGAAC+TGG | 0.380854 | tig0015626:+21590 | Msa1356350:CDS |
| TCAGCTCTTAGTTTGTGAAT+TGG | 0.383275 | tig0015626:+22344 | Msa1356350:exon |
| GGTCTTTCCGTTAGACTTAA+CGG | 0.394785 | tig0015626:-21864 | Msa1356350:intergenic |
| AAGTTGGAGTGGCCGAATTT+GGG | 0.395699 | tig0015626:+21580 | Msa1356350:CDS |
| TACAATGAAGTTTGTGATCA+TGG | 0.414865 | tig0015626:-22259 | Msa1356350:intergenic |
| ACCCAGTTCTAGCCCAAATT+CGG | 0.418400 | tig0015626:-21592 | Msa1356350:intergenic |
| GAGGCTAACATCGTAGAAAT+CGG | 0.419130 | tig0015626:-21732 | Msa1356350:intergenic |
| CAAGGCTTGAGGTCGTTGAT+TGG | 0.419545 | tig0015626:+22290 | Msa1356350:CDS |
| TTTGGCCAGCTGTGTTTCCC+GGG | 0.425002 | tig0015626:+21492 | Msa1356350:CDS |
| ATTTCTGTTAAGCCGATAAA+CGG | 0.435167 | tig0015626:+21776 | Msa1356350:CDS |
| ATTGCAAGAACCAACGAGAT+AGG | 0.440008 | tig0015626:-21317 | Msa1356350:intergenic |
| AACTTCTTTGAATAAAATGT+TGG | 0.447829 | tig0015626:-21971 | Msa1356350:intergenic |
| AGCAACAACGTAATCCGTTC+CGG | 0.459270 | tig0015626:-22059 | Msa1356350:intergenic |
| AAAGGAAATTGCTCAACTGC+TGG | 0.462531 | tig0015626:+21800 | Msa1356350:CDS |
| TTTATCGGCTTAACAGAAAT+GGG | 0.466301 | tig0015626:-21773 | Msa1356350:intergenic |
| GTGAATTCAGCGAGCGATGC+CGG | 0.474866 | tig0015626:-21698 | Msa1356350:intergenic |
| TTGTTGCTTTCTGTGCTGAC+AGG | 0.489131 | tig0015626:+22074 | Msa1356350:CDS |
| TAATGTGGTGCCGCATGCAC+CGG | 0.497286 | tig0015626:-21651 | Msa1356350:intergenic |
| TAAGCATAACTATAAGAAGT+TGG | 0.500482 | tig0015626:-22007 | Msa1356350:intergenic |
| ACATTAAAATGTGGAGGGGC+AGG | 0.501285 | tig0015626:+21668 | Msa1356350:CDS |
| GGAGACGGACAATGCCAAAC+CGG | 0.501682 | tig0015626:+21632 | Msa1356350:CDS |
| TCCGCCGTTGAAATGTTCCC+CGG | 0.513240 | tig0015626:-21510 | Msa1356350:intergenic |
| TGTTCCCCGGGAAACACAGC+TGG | 0.524773 | tig0015626:-21497 | Msa1356350:intergenic |
| GTTAAGCCGATAAACGGAAA+AGG | 0.526454 | tig0015626:+21782 | Msa1356350:CDS |
| GAACTTTCCGTTAAGTCTAA+CGG | 0.532105 | tig0015626:+21857 | Msa1356350:CDS |
| TACGATGTTAGCCTCGTCGA+TGG | 0.533977 | tig0015626:+21740 | Msa1356350:CDS |
| TGGTGCCGCATGCACCGGTT+TGG | 0.537187 | tig0015626:-21646 | Msa1356350:intergenic |
| GTGCATGTGAAAATACTTGT+TGG | 0.541354 | tig0015626:-22037 | Msa1356350:intergenic |
| TGAGGTCGTTGATTGGAAGC+TGG | 0.542937 | tig0015626:+22297 | Msa1356350:CDS |
| AGGCTAACATCGTAGAAATC+GGG | 0.543886 | tig0015626:-21731 | Msa1356350:intergenic |
| TGTTCACCGCTCCAGTAAGT+TGG | 0.544607 | tig0015626:+21564 | Msa1356350:CDS |
| ATGTTGGTTTACAAGTAGAA+GGG | 0.546520 | tig0015626:-21955 | Msa1356350:intergenic |
| GGGGAACATTTCAACGGCGG+AGG | 0.548739 | tig0015626:+21512 | Msa1356350:CDS |
| AGTCTAACGGAAAGACCGTT+GGG | 0.555398 | tig0015626:+21870 | Msa1356350:CDS |
| CTTCATTGTAGTGGATCACA+AGG | 0.557221 | tig0015626:+22272 | Msa1356350:CDS |
| CAATGCCAAACCGGTGCATG+CGG | 0.560695 | tig0015626:+21641 | Msa1356350:CDS |
| CCGCCGTTGAAATGTTCCCC+GGG | 0.567095 | tig0015626:-21509 | Msa1356350:intergenic |
| GCCGAATTTGGGCTAGAACT+GGG | 0.568515 | tig0015626:+21591 | Msa1356350:CDS |
| TGTGACTGCTATGATTGATA+AGG | 0.574826 | tig0015626:-21222 | Msa1356350:intergenic |
| AAAGTTCAGAGAAAATAAAA+CGG | 0.577025 | tig0015626:-22419 | Msa1356350:intergenic |
| GGCACCACATTAAAATGTGG+AGG | 0.580002 | tig0015626:+21662 | Msa1356350:CDS |
| ACTGATGAGTATTGTTGTAG+AGG | 0.583748 | tig0015626:+21920 | Msa1356350:CDS |
| CACCATAGTAAACTATTGCA+AGG | 0.587972 | tig0015626:+21463 | Msa1356350:CDS |
| GCACCACATTAAAATGTGGA+GGG | 0.588374 | tig0015626:+21663 | Msa1356350:CDS |
| GATCACAAACTTCATTGTAG+TGG | 0.593624 | tig0015626:+22263 | Msa1356350:CDS |
| AAGTCTAACGGAAAGACCGT+TGG | 0.602579 | tig0015626:+21869 | Msa1356350:CDS |
| ACCGCTCCAGTAAGTTGGAG+TGG | 0.605036 | tig0015626:+21569 | Msa1356350:CDS |
| TTTCCCGGGGAACATTTCAA+CGG | 0.606157 | tig0015626:+21506 | Msa1356350:CDS |
| CACCACATTAAAATGTGGAG+GGG | 0.610296 | tig0015626:+21664 | Msa1356350:CDS |
| TTGGCCAGCTGTGTTTCCCG+GGG | 0.612779 | tig0015626:+21493 | Msa1356350:CDS |
| GGAGGATTCGTCCTTAAACA+AGG | 0.613851 | tig0015626:+21530 | Msa1356350:CDS |
| AACTTTGACCAAAATGGAGA+CGG | 0.614713 | tig0015626:+21617 | Msa1356350:CDS |
| ACTTACTGGAGCGGTGAACA+CGG | 0.633829 | tig0015626:-21561 | Msa1356350:intergenic |
| CCCGGGGAACATTTCAACGG+CGG | 0.639776 | tig0015626:+21509 | Msa1356350:CDS |
| CTGGTGGATAGCAATGATGA+TGG | 0.640894 | tig0015626:+22316 | Msa1356350:CDS |
| GCCACTCCAACTTACTGGAG+CGG | 0.645829 | tig0015626:-21570 | Msa1356350:intergenic |
| TGCGGCACCACATTAAAATG+TGG | 0.646949 | tig0015626:+21659 | Msa1356350:CDS |
| TTATTCAAAGAAGTTTAAGG+AGG | 0.649542 | tig0015626:+21979 | Msa1356350:CDS |
| GGTCGTTGATTGGAAGCTGG+TGG | 0.649593 | tig0015626:+22300 | Msa1356350:CDS |
| ACAAGCGCTTCGACACCCAA+CGG | 0.656281 | tig0015626:-21885 | Msa1356350:intergenic |
| GTAGTGGATCACAAGGCTTG+AGG | 0.661274 | tig0015626:+22279 | Msa1356350:CDS |
| GCACATTGAAGCCATCGACG+AGG | 0.703479 | tig0015626:-21751 | None:intergenic |
| TACTGGAGCGGTGAACACGG+AGG | 0.748549 | tig0015626:-21558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAATAAAAAATTAA+TGG | + | tig0015626:22545-22564 | Msa1356350:three_prime_UTR | 0.0% |
| !! | TAAATAAAATAAAAAATTAA+TGG | + | tig0015626:22545-22564 | Msa1356350:three_prime_UTR | 0.0% |
| !!! | TTTTTTTTTTCTTTTTCAAG+AGG | - | tig0015626:21256-21275 | Msa1306930:intergenic | 15.0% |
| !!! | ATTTTATTCAAAGAAGTTTA+AGG | + | tig0015626:21976-21995 | Msa1356350:CDS | 15.0% |
| !!! | TAATGGAATATTTTATTGAT+TGG | + | tig0015626:22180-22199 | Msa1356350:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | tig0015626:22394-22413 | Msa1356350:three_prime_UTR | 15.0% |
| !! | ATATATTGTTCTACATAAAA+AGG | + | tig0015626:22462-22481 | Msa1356350:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTCTTTTTCAAG+AGG | - | tig0015626:21256-21275 | Msa1356350:intergenic | 15.0% |
| !!! | ATTTTATTCAAAGAAGTTTA+AGG | + | tig0015626:21976-21995 | Msa1356350:CDS | 15.0% |
| !!! | TAATGGAATATTTTATTGAT+TGG | + | tig0015626:22180-22199 | Msa1356350:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | tig0015626:22394-22413 | Msa1356350:three_prime_UTR | 15.0% |
| !! | ATATATTGTTCTACATAAAA+AGG | + | tig0015626:22462-22481 | Msa1356350:three_prime_UTR | 15.0% |
| !! | AACTTCTTTGAATAAAATGT+TGG | - | tig0015626:21974-21993 | Msa1356350:intergenic | 20.0% |
| !!! | ACTTCTTTTATGTTTTGATT+TGG | + | tig0015626:22208-22227 | Msa1356350:intron | 20.0% |
| !! | AAAGTTCAGAGAAAATAAAA+CGG | - | tig0015626:22422-22441 | Msa1356350:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTTTTGATTG+AGG | + | tig0015626:22439-22458 | Msa1356350:three_prime_UTR | 20.0% |
| !! | AATATATCCTCAATCAAAAA+AGG | - | tig0015626:22449-22468 | Msa1356350:intergenic | 20.0% |
| !! | AACTTCTTTGAATAAAATGT+TGG | - | tig0015626:21974-21993 | Msa1356350:intergenic | 20.0% |
| !!! | ACTTCTTTTATGTTTTGATT+TGG | + | tig0015626:22208-22227 | Msa1356350:intron | 20.0% |
| !! | AAAGTTCAGAGAAAATAAAA+CGG | - | tig0015626:22422-22441 | Msa1356350:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTTTTGATTG+AGG | + | tig0015626:22439-22458 | Msa1356350:three_prime_UTR | 20.0% |
| !! | AATATATCCTCAATCAAAAA+AGG | - | tig0015626:22449-22468 | Msa1356350:intergenic | 20.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | tig0015626:21329-21348 | Msa1356350:CDS | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | tig0015626:21929-21948 | Msa1356350:CDS | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | tig0015626:21930-21949 | Msa1356350:CDS | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | tig0015626:21979-21998 | Msa1356350:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | tig0015626:22010-22029 | Msa1356350:intergenic | 25.0% |
| ! | TGTGAAAGTCAAAATGTTAA+TGG | + | tig0015626:22163-22182 | Msa1356350:intron | 25.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | tig0015626:21329-21348 | Msa1356350:CDS | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | tig0015626:21929-21948 | Msa1356350:CDS | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | tig0015626:21930-21949 | Msa1356350:CDS | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | tig0015626:21979-21998 | Msa1356350:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | tig0015626:22010-22029 | Msa1356350:intergenic | 25.0% |
| ! | TGTGAAAGTCAAAATGTTAA+TGG | + | tig0015626:22163-22182 | Msa1356350:intron | 25.0% |
| ! | AATGATTTTACCTATCTCGT+TGG | + | tig0015626:21307-21326 | Msa1356350:CDS | 30.0% |
| TGCCAAAAAAATTGTTGATG+AGG | + | tig0015626:21405-21424 | Msa1356350:intron | 30.0% | |
| !!! | GTCCTCATCAACAATTTTTT+TGG | - | tig0015626:21410-21429 | Msa1356350:intergenic | 30.0% |
| ! | AAAAAATTGTTGATGAGGAC+AGG | + | tig0015626:21410-21429 | Msa1356350:intron | 30.0% |
| ! | AAAAATTGTTGATGAGGACA+GGG | + | tig0015626:21411-21430 | Msa1356350:intron | 30.0% |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | tig0015626:21776-21795 | Msa1356350:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | tig0015626:21776-21795 | Msa1356350:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | tig0015626:21791-21810 | Msa1356350:intergenic | 30.0% |
| !! | ATGTTGGTTTACAAGTAGAA+GGG | - | tig0015626:21958-21977 | Msa1356350:intergenic | 30.0% |
| !! | AATGTTGGTTTACAAGTAGA+AGG | - | tig0015626:21959-21978 | Msa1356350:intergenic | 30.0% |
| !!! | AAACGACACTCGTTTTAAAA+CGG | + | tig0015626:22115-22134 | Msa1356350:intron | 30.0% |
| !!! | TATGTTTTGATTTGGACTTC+AGG | + | tig0015626:22216-22235 | Msa1356350:intron | 30.0% |
| TACAATGAAGTTTGTGATCA+TGG | - | tig0015626:22262-22281 | Msa1356350:intergenic | 30.0% | |
| ! | AATGATTTTACCTATCTCGT+TGG | + | tig0015626:21307-21326 | Msa1356350:CDS | 30.0% |
| TGCCAAAAAAATTGTTGATG+AGG | + | tig0015626:21405-21424 | Msa1356350:intron | 30.0% | |
| !!! | GTCCTCATCAACAATTTTTT+TGG | - | tig0015626:21410-21429 | Msa1356350:intergenic | 30.0% |
| ! | AAAAAATTGTTGATGAGGAC+AGG | + | tig0015626:21410-21429 | Msa1356350:intron | 30.0% |
| ! | AAAAATTGTTGATGAGGACA+GGG | + | tig0015626:21411-21430 | Msa1356350:intron | 30.0% |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | tig0015626:21776-21795 | Msa1356350:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | tig0015626:21776-21795 | Msa1356350:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | tig0015626:21791-21810 | Msa1356350:intergenic | 30.0% |
| !! | ATGTTGGTTTACAAGTAGAA+GGG | - | tig0015626:21958-21977 | Msa1356350:intergenic | 30.0% |
| !! | AATGTTGGTTTACAAGTAGA+AGG | - | tig0015626:21959-21978 | Msa1356350:intergenic | 30.0% |
| !!! | AAACGACACTCGTTTTAAAA+CGG | + | tig0015626:22115-22134 | Msa1356350:intron | 30.0% |
| !!! | TATGTTTTGATTTGGACTTC+AGG | + | tig0015626:22216-22235 | Msa1356350:intron | 30.0% |
| TACAATGAAGTTTGTGATCA+TGG | - | tig0015626:22262-22281 | Msa1356350:intergenic | 30.0% | |
| TGTGACTGCTATGATTGATA+AGG | - | tig0015626:21225-21244 | Msa1306930:intergenic | 35.0% | |
| AAAAATCTAGCAGTCACACA+TGG | + | tig0015626:21271-21290 | Msa1356350:exon | 35.0% | |
| CACCATAGTAAACTATTGCA+AGG | + | tig0015626:21463-21482 | Msa1356350:CDS | 35.0% | |
| CTCCTTGCAATAGTTTACTA+TGG | - | tig0015626:21468-21487 | Msa1356350:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | tig0015626:21617-21636 | Msa1356350:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | tig0015626:21777-21796 | Msa1356350:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | tig0015626:21838-21857 | Msa1356350:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | tig0015626:21854-21873 | Msa1356350:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | tig0015626:21855-21874 | Msa1356350:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | tig0015626:21857-21876 | Msa1356350:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | tig0015626:21920-21939 | Msa1356350:CDS | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | tig0015626:22040-22059 | Msa1356350:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | tig0015626:22040-22059 | Msa1356350:CDS | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | tig0015626:22263-22282 | Msa1356350:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | tig0015626:22344-22363 | Msa1356350:exon | 35.0% |
| TGTGACTGCTATGATTGATA+AGG | - | tig0015626:21225-21244 | Msa1356350:intergenic | 35.0% | |
| AAAAATCTAGCAGTCACACA+TGG | + | tig0015626:21271-21290 | Msa1356350:exon | 35.0% | |
| CACCATAGTAAACTATTGCA+AGG | + | tig0015626:21463-21482 | Msa1356350:CDS | 35.0% | |
| CTCCTTGCAATAGTTTACTA+TGG | - | tig0015626:21468-21487 | Msa1356350:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | tig0015626:21617-21636 | Msa1356350:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | tig0015626:21777-21796 | Msa1356350:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | tig0015626:21838-21857 | Msa1356350:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | tig0015626:21854-21873 | Msa1356350:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | tig0015626:21855-21874 | Msa1356350:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | tig0015626:21857-21876 | Msa1356350:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | tig0015626:21920-21939 | Msa1356350:CDS | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | tig0015626:22040-22059 | Msa1356350:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | tig0015626:22040-22059 | Msa1356350:CDS | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | tig0015626:22263-22282 | Msa1356350:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | tig0015626:22344-22363 | Msa1356350:exon | 35.0% |
| ATTGCAAGAACCAACGAGAT+AGG | - | tig0015626:21320-21339 | Msa1356350:intergenic | 40.0% | |
| ACTATTGCAAGGAGACTCTT+TGG | + | tig0015626:21474-21493 | Msa1356350:CDS | 40.0% | |
| GCACCACATTAAAATGTGGA+GGG | + | tig0015626:21663-21682 | Msa1356350:CDS | 40.0% | |
| CACCACATTAAAATGTGGAG+GGG | + | tig0015626:21664-21683 | Msa1356350:CDS | 40.0% | |
| AGGCTAACATCGTAGAAATC+GGG | - | tig0015626:21734-21753 | Msa1356350:intergenic | 40.0% | |
| GAGGCTAACATCGTAGAAAT+CGG | - | tig0015626:21735-21754 | Msa1356350:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | tig0015626:21782-21801 | Msa1356350:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | tig0015626:21800-21819 | Msa1356350:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | tig0015626:21867-21886 | Msa1356350:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | tig0015626:22045-22064 | Msa1356350:CDS | 40.0% |
| !!! | GACACTCGTTTTAAAACGGA+TGG | + | tig0015626:22119-22138 | Msa1356350:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | tig0015626:22272-22291 | Msa1356350:CDS | 40.0% |
| ATTGCAAGAACCAACGAGAT+AGG | - | tig0015626:21320-21339 | Msa1356350:intergenic | 40.0% | |
| ACTATTGCAAGGAGACTCTT+TGG | + | tig0015626:21474-21493 | Msa1356350:CDS | 40.0% | |
| GCACCACATTAAAATGTGGA+GGG | + | tig0015626:21663-21682 | Msa1356350:CDS | 40.0% | |
| CACCACATTAAAATGTGGAG+GGG | + | tig0015626:21664-21683 | Msa1356350:CDS | 40.0% | |
| AGGCTAACATCGTAGAAATC+GGG | - | tig0015626:21734-21753 | Msa1356350:intergenic | 40.0% | |
| GAGGCTAACATCGTAGAAAT+CGG | - | tig0015626:21735-21754 | Msa1356350:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | tig0015626:21782-21801 | Msa1356350:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | tig0015626:21800-21819 | Msa1356350:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | tig0015626:21867-21886 | Msa1356350:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | tig0015626:22045-22064 | Msa1356350:CDS | 40.0% |
| !!! | GACACTCGTTTTAAAACGGA+TGG | + | tig0015626:22119-22138 | Msa1356350:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | tig0015626:22272-22291 | Msa1356350:CDS | 40.0% |
| TTTCCCGGGGAACATTTCAA+CGG | + | tig0015626:21506-21525 | Msa1356350:CDS | 45.0% | |
| GGAGGATTCGTCCTTAAACA+AGG | + | tig0015626:21530-21549 | Msa1356350:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | tig0015626:21544-21563 | Msa1356350:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | tig0015626:21579-21598 | Msa1356350:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | tig0015626:21580-21599 | Msa1356350:CDS | 45.0% | |
| ! | ACCCAGTTCTAGCCCAAATT+CGG | - | tig0015626:21595-21614 | Msa1356350:intergenic | 45.0% |
| GGGTGCAACTTTGACCAAAA+TGG | + | tig0015626:21611-21630 | Msa1356350:CDS | 45.0% | |
| TGCGGCACCACATTAAAATG+TGG | + | tig0015626:21659-21678 | Msa1356350:CDS | 45.0% | |
| GGCACCACATTAAAATGTGG+AGG | + | tig0015626:21662-21681 | Msa1356350:CDS | 45.0% | |
| !! | TGCCCCTCCACATTTTAATG+TGG | - | tig0015626:21669-21688 | Msa1356350:intergenic | 45.0% |
| ACATTAAAATGTGGAGGGGC+AGG | + | tig0015626:21668-21687 | Msa1356350:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | tig0015626:21869-21888 | Msa1356350:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | tig0015626:21870-21889 | Msa1356350:CDS | 45.0% | |
| AGCAACAACGTAATCCGTTC+CGG | - | tig0015626:22062-22081 | Msa1356350:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTGTGCTGAC+AGG | + | tig0015626:22074-22093 | Msa1356350:CDS | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | tig0015626:22316-22335 | Msa1356350:CDS | 45.0% |
| TTTCCCGGGGAACATTTCAA+CGG | + | tig0015626:21506-21525 | Msa1356350:CDS | 45.0% | |
| GGAGGATTCGTCCTTAAACA+AGG | + | tig0015626:21530-21549 | Msa1356350:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | tig0015626:21544-21563 | Msa1356350:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | tig0015626:21579-21598 | Msa1356350:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | tig0015626:21580-21599 | Msa1356350:CDS | 45.0% | |
| ! | ACCCAGTTCTAGCCCAAATT+CGG | - | tig0015626:21595-21614 | Msa1356350:intergenic | 45.0% |
| GGGTGCAACTTTGACCAAAA+TGG | + | tig0015626:21611-21630 | Msa1356350:CDS | 45.0% | |
| TGCGGCACCACATTAAAATG+TGG | + | tig0015626:21659-21678 | Msa1356350:CDS | 45.0% | |
| GGCACCACATTAAAATGTGG+AGG | + | tig0015626:21662-21681 | Msa1356350:CDS | 45.0% | |
| !! | TGCCCCTCCACATTTTAATG+TGG | - | tig0015626:21669-21688 | Msa1356350:intergenic | 45.0% |
| ACATTAAAATGTGGAGGGGC+AGG | + | tig0015626:21668-21687 | Msa1356350:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | tig0015626:21869-21888 | Msa1356350:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | tig0015626:21870-21889 | Msa1356350:CDS | 45.0% | |
| AGCAACAACGTAATCCGTTC+CGG | - | tig0015626:22062-22081 | Msa1356350:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTGTGCTGAC+AGG | + | tig0015626:22074-22093 | Msa1356350:CDS | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | tig0015626:22316-22335 | Msa1356350:CDS | 45.0% |
| ACTTACTGGAGCGGTGAACA+CGG | - | tig0015626:21564-21583 | Msa1356350:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | tig0015626:21564-21583 | Msa1356350:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | tig0015626:21578-21597 | Msa1356350:intergenic | 50.0% | |
| ! | GCCGAATTTGGGCTAGAACT+GGG | + | tig0015626:21591-21610 | Msa1356350:CDS | 50.0% |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | tig0015626:21628-21647 | Msa1356350:intergenic | 50.0% |
| ! | TACGATGTTAGCCTCGTCGA+TGG | + | tig0015626:21740-21759 | Msa1356350:CDS | 50.0% |
| !! | GTAGTGGATCACAAGGCTTG+AGG | + | tig0015626:22279-22298 | Msa1356350:CDS | 50.0% |
| CAAGGCTTGAGGTCGTTGAT+TGG | + | tig0015626:22290-22309 | Msa1356350:CDS | 50.0% | |
| ! | TGAGGTCGTTGATTGGAAGC+TGG | + | tig0015626:22297-22316 | Msa1356350:CDS | 50.0% |
| ACTTACTGGAGCGGTGAACA+CGG | - | tig0015626:21564-21583 | Msa1356350:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | tig0015626:21564-21583 | Msa1356350:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | tig0015626:21578-21597 | Msa1356350:intergenic | 50.0% | |
| ! | GCCGAATTTGGGCTAGAACT+GGG | + | tig0015626:21591-21610 | Msa1356350:CDS | 50.0% |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | tig0015626:21628-21647 | Msa1356350:intergenic | 50.0% |
| ! | TACGATGTTAGCCTCGTCGA+TGG | + | tig0015626:21740-21759 | Msa1356350:CDS | 50.0% |
| !! | GTAGTGGATCACAAGGCTTG+AGG | + | tig0015626:22279-22298 | Msa1356350:CDS | 50.0% |
| CAAGGCTTGAGGTCGTTGAT+TGG | + | tig0015626:22290-22309 | Msa1356350:CDS | 50.0% | |
| ! | TGAGGTCGTTGATTGGAAGC+TGG | + | tig0015626:22297-22316 | Msa1356350:CDS | 50.0% |
| CTTTGGCCAGCTGTGTTTCC+CGG | + | tig0015626:21491-21510 | Msa1356350:CDS | 55.0% | |
| TTTGGCCAGCTGTGTTTCCC+GGG | + | tig0015626:21492-21511 | Msa1356350:CDS | 55.0% | |
| TCCGCCGTTGAAATGTTCCC+CGG | - | tig0015626:21513-21532 | Msa1356350:intergenic | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | tig0015626:21569-21588 | Msa1356350:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | tig0015626:21573-21592 | Msa1356350:intergenic | 55.0% | |
| ! | GGCCGAATTTGGGCTAGAAC+TGG | + | tig0015626:21590-21609 | Msa1356350:CDS | 55.0% |
| GGAGACGGACAATGCCAAAC+CGG | + | tig0015626:21632-21651 | Msa1356350:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | tig0015626:21641-21660 | Msa1356350:CDS | 55.0% | |
| !! | TAATGTGGTGCCGCATGCAC+CGG | - | tig0015626:21654-21673 | Msa1356350:intergenic | 55.0% |
| TGGAGGGGCAGGAAAAACTC+CGG | + | tig0015626:21679-21698 | Msa1356350:CDS | 55.0% | |
| GTGAATTCAGCGAGCGATGC+CGG | - | tig0015626:21701-21720 | Msa1356350:intergenic | 55.0% | |
| GCACATTGAAGCCATCGACG+AGG | - | tig0015626:21754-21773 | Msa1356350:intergenic | 55.0% | |
| ACAAGCGCTTCGACACCCAA+CGG | - | tig0015626:21888-21907 | Msa1356350:intergenic | 55.0% | |
| ! | GGTCGTTGATTGGAAGCTGG+TGG | + | tig0015626:22300-22319 | Msa1356350:CDS | 55.0% |
| CTTTGGCCAGCTGTGTTTCC+CGG | + | tig0015626:21491-21510 | Msa1356350:CDS | 55.0% | |
| TTTGGCCAGCTGTGTTTCCC+GGG | + | tig0015626:21492-21511 | Msa1356350:CDS | 55.0% | |
| TCCGCCGTTGAAATGTTCCC+CGG | - | tig0015626:21513-21532 | Msa1356350:intergenic | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | tig0015626:21569-21588 | Msa1356350:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | tig0015626:21573-21592 | Msa1356350:intergenic | 55.0% | |
| ! | GGCCGAATTTGGGCTAGAAC+TGG | + | tig0015626:21590-21609 | Msa1356350:CDS | 55.0% |
| GGAGACGGACAATGCCAAAC+CGG | + | tig0015626:21632-21651 | Msa1356350:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | tig0015626:21641-21660 | Msa1356350:CDS | 55.0% | |
| !! | TAATGTGGTGCCGCATGCAC+CGG | - | tig0015626:21654-21673 | Msa1356350:intergenic | 55.0% |
| TGGAGGGGCAGGAAAAACTC+CGG | + | tig0015626:21679-21698 | Msa1356350:CDS | 55.0% | |
| GTGAATTCAGCGAGCGATGC+CGG | - | tig0015626:21701-21720 | Msa1356350:intergenic | 55.0% | |
| GCACATTGAAGCCATCGACG+AGG | - | tig0015626:21754-21773 | Msa1356350:intergenic | 55.0% | |
| ACAAGCGCTTCGACACCCAA+CGG | - | tig0015626:21888-21907 | Msa1356350:intergenic | 55.0% | |
| ! | GGTCGTTGATTGGAAGCTGG+TGG | + | tig0015626:22300-22319 | Msa1356350:CDS | 55.0% |
| TTGGCCAGCTGTGTTTCCCG+GGG | + | tig0015626:21493-21512 | Msa1356350:CDS | 60.0% | |
| TGTTCCCCGGGAAACACAGC+TGG | - | tig0015626:21500-21519 | Msa1356350:intergenic | 60.0% | |
| CCGCCGTTGAAATGTTCCCC+GGG | - | tig0015626:21512-21531 | Msa1356350:intergenic | 60.0% | |
| CCCGGGGAACATTTCAACGG+CGG | + | tig0015626:21509-21528 | Msa1356350:CDS | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | tig0015626:21512-21531 | Msa1356350:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | tig0015626:21561-21580 | Msa1356350:intergenic | 60.0% | |
| TTGGCCAGCTGTGTTTCCCG+GGG | + | tig0015626:21493-21512 | Msa1356350:CDS | 60.0% | |
| TGTTCCCCGGGAAACACAGC+TGG | - | tig0015626:21500-21519 | Msa1356350:intergenic | 60.0% | |
| CCGCCGTTGAAATGTTCCCC+GGG | - | tig0015626:21512-21531 | Msa1356350:intergenic | 60.0% | |
| CCCGGGGAACATTTCAACGG+CGG | + | tig0015626:21509-21528 | Msa1356350:CDS | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | tig0015626:21512-21531 | Msa1356350:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | tig0015626:21561-21580 | Msa1356350:intergenic | 60.0% | |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | tig0015626:21649-21668 | Msa1356350:intergenic | 65.0% |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | tig0015626:21649-21668 | Msa1356350:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015626 | gene | 21210 | 22575 | 21210 | ID=Msa1356350;Name=Msa1356350 |
| tig0015626 | mRNA | 21210 | 22575 | 21210 | ID=Msa1356350-mRNA-1;Parent=Msa1356350;Name=Msa1356350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|1|1|3|214|282 |
| tig0015626 | exon | 21210 | 21350 | 21210 | ID=Msa1356350-mRNA-1:exon:9849;Parent=Msa1356350-mRNA-1 |
| tig0015626 | exon | 21432 | 22095 | 21432 | ID=Msa1356350-mRNA-1:exon:9850;Parent=Msa1356350-mRNA-1 |
| tig0015626 | exon | 22238 | 22575 | 22238 | ID=Msa1356350-mRNA-1:exon:9851;Parent=Msa1356350-mRNA-1 |
| tig0015626 | five_prime_UTR | 21210 | 21289 | 21210 | ID=Msa1356350-mRNA-1:five_prime_utr;Parent=Msa1356350-mRNA-1 |
| tig0015626 | CDS | 21290 | 21350 | 21290 | ID=Msa1356350-mRNA-1:cds;Parent=Msa1356350-mRNA-1 |
| tig0015626 | CDS | 21432 | 22095 | 21432 | ID=Msa1356350-mRNA-1:cds;Parent=Msa1356350-mRNA-1 |
| tig0015626 | CDS | 22238 | 22361 | 22238 | ID=Msa1356350-mRNA-1:cds;Parent=Msa1356350-mRNA-1 |
| tig0015626 | three_prime_UTR | 22362 | 22575 | 22362 | ID=Msa1356350-mRNA-1:three_prime_utr;Parent=Msa1356350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
