Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772940 | XP_003615144.1 | 96.519 | 316 | 11 | 0 | 1 | 316 | 1 | 316 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772940 | sp|O82161|PHI1_TOBAC | 74.038 | 312 | 72 | 4 | 9 | 316 | 7 | 313 | 1.16e-164 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772940 | G7KBC1 | 96.519 | 316 | 11 | 0 | 1 | 316 | 1 | 316 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731900 | Msa0772940 | 0.836315 | 1.005471e-56 | -8.615850e-47 |
| Msa0772940 | Msa0810190 | 0.843696 | 1.195542e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772940 | MtrunA17_Chr5g0426441 | 96.463 | 311 | 11 | 0 | 6 | 316 | 648 | 958 | 0.0 | 617 |
| Msa0772940 | MtrunA17_Chr5g0426441 | 93.038 | 316 | 21 | 1 | 1 | 316 | 25 | 339 | 0.0 | 602 |
| Msa0772940 | MtrunA17_Chr5g0426441 | 93.891 | 311 | 18 | 1 | 6 | 316 | 339 | 648 | 0.0 | 598 |
| Msa0772940 | MtrunA17_Chr3g0116001 | 79.461 | 297 | 48 | 3 | 20 | 316 | 21 | 304 | 1.22e-172 | 480 |
| Msa0772940 | MtrunA17_Chr3g0116011 | 79.125 | 297 | 49 | 4 | 20 | 316 | 21 | 304 | 3.32e-171 | 477 |
| Msa0772940 | MtrunA17_Chr3g0115951 | 71.383 | 311 | 85 | 3 | 9 | 316 | 8 | 317 | 8.45e-156 | 438 |
| Msa0772940 | MtrunA17_Chr4g0050321 | 61.053 | 285 | 97 | 3 | 32 | 316 | 30 | 300 | 6.60e-122 | 352 |
| Msa0772940 | MtrunA17_Chr2g0279311 | 53.145 | 318 | 132 | 7 | 1 | 316 | 2 | 304 | 2.82e-118 | 343 |
| Msa0772940 | MtrunA17_Chr4g0018171 | 36.458 | 288 | 161 | 8 | 25 | 301 | 53 | 329 | 1.80e-47 | 163 |
| Msa0772940 | MtrunA17_Chr1g0188071 | 35.179 | 307 | 178 | 7 | 6 | 301 | 33 | 329 | 1.64e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772940 | AT4G08950.1 | 71.906 | 299 | 74 | 6 | 24 | 316 | 20 | 314 | 1.18e-148 | 421 |
| Msa0772940 | AT1G35140.1 | 65.079 | 315 | 103 | 3 | 1 | 315 | 1 | 308 | 1.34e-143 | 407 |
| Msa0772940 | AT5G64260.1 | 57.468 | 308 | 121 | 4 | 10 | 316 | 7 | 305 | 2.04e-121 | 351 |
| Msa0772940 | AT5G09440.1 | 55.482 | 301 | 100 | 7 | 18 | 316 | 10 | 278 | 5.11e-102 | 301 |
| Msa0772940 | AT5G51550.1 | 35.738 | 305 | 174 | 8 | 20 | 313 | 38 | 331 | 2.00e-49 | 168 |
| Msa0772940 | AT3G02970.1 | 31.544 | 298 | 166 | 7 | 49 | 314 | 39 | 330 | 1.05e-44 | 155 |
| Msa0772940 | AT2G35150.1 | 34.154 | 325 | 187 | 11 | 6 | 312 | 1 | 316 | 8.39e-43 | 150 |
| Msa0772940 | AT2G17230.1 | 32.237 | 304 | 184 | 9 | 22 | 313 | 64 | 357 | 9.17e-41 | 146 |
Find 68 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_2:+47389959 | Msa0772940:CDS |
| TCTTATGGTGCACGCGTAAA+TGG | 0.225421 | 5_2:+47389866 | Msa0772940:CDS |
| TCAAGACCCACATCATTATT+TGG | 0.238207 | 5_2:-47390007 | None:intergenic |
| GGAACTCATGGTTCTTCTTA+TGG | 0.256364 | 5_2:+47389851 | Msa0772940:CDS |
| AATCAGTTATGATGACTCTT+TGG | 0.275197 | 5_2:-47389538 | None:intergenic |
| GAAACAAATTTGCGTACATT+TGG | 0.281754 | 5_2:+47389894 | Msa0772940:CDS |
| CTCGATGAGAATTACTCTTT+AGG | 0.297921 | 5_2:+47389707 | Msa0772940:CDS |
| TGGTTATGCTGGGGACCTTT+TGG | 0.299405 | 5_2:+47390171 | Msa0772940:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_2:-47389971 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_2:-47390106 | None:intergenic |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5_2:-47389748 | None:intergenic |
| AAACAAATTTGCGTACATTT+GGG | 0.353432 | 5_2:+47389895 | Msa0772940:CDS |
| GTACTGGTGTTTATGCTAAA+GGG | 0.358568 | 5_2:+47390140 | Msa0772940:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_2:+47390102 | Msa0772940:CDS |
| GGGGCTTATCCTGGTTATGC+TGG | 0.376447 | 5_2:+47390160 | Msa0772940:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_2:-47389959 | None:intergenic |
| AAATCTCAATCAACCTCATT+TGG | 0.389896 | 5_2:+47389495 | Msa0772940:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_2:+47390217 | Msa0772940:CDS |
| ATCAGTTATGATGACTCTTT+GGG | 0.405878 | 5_2:-47389537 | None:intergenic |
| AATAATGATGTGGGTCTTGA+TGG | 0.406282 | 5_2:+47390010 | Msa0772940:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.411734 | 5_2:-47389469 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+AGG | 0.430957 | 5_2:+47390139 | Msa0772940:CDS |
| GAAGCTGCTTCAGCTTGTAC+TGG | 0.441264 | 5_2:+47390124 | Msa0772940:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_2:-47389448 | None:intergenic |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5_2:-47389802 | None:intergenic |
| GGAACCGTAACGAATCCTTT+TGG | 0.451430 | 5_2:+47390064 | Msa0772940:CDS |
| TTTAAGTTGTTGGTCCGATT+CGG | 0.453958 | 5_2:-47389438 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_2:-47390079 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_2:-47389983 | None:intergenic |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5_2:+47389752 | Msa0772940:CDS |
| TATGCTAAAGGGGCTTATCC+TGG | 0.476402 | 5_2:+47390151 | Msa0772940:CDS |
| GGGCTTATCCTGGTTATGCT+GGG | 0.476504 | 5_2:+47390161 | Msa0772940:CDS |
| AAATTTGCGTACATTTGGGT+TGG | 0.481339 | 5_2:+47389899 | Msa0772940:CDS |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5_2:-47389789 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5_2:+47389500 | Msa0772940:CDS |
| GACGTGGTTGTTCCTCGTTT+AGG | 0.494909 | 5_2:-47389581 | None:intergenic |
| TGCAAGAAAACTCACCGAAT+CGG | 0.499245 | 5_2:+47389424 | Msa0772940:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_2:+47389979 | Msa0772940:CDS |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5_2:+47389809 | Msa0772940:CDS |
| TACTGGTGTTTATGCTAAAG+GGG | 0.514152 | 5_2:+47390141 | Msa0772940:CDS |
| AACCTCAGTTTGTTCTACAT+TGG | 0.515995 | 5_2:+47390276 | Msa0772940:CDS |
| TCATTATTTGGTGCAACCAA+TGG | 0.521248 | 5_2:-47389995 | None:intergenic |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_2:+47390208 | Msa0772940:CDS |
| TCAAGTAGGTGTGGAACTCA+TGG | 0.533684 | 5_2:+47389839 | Msa0772940:CDS |
| TCCTCGTTTAGGAGAAGAGA+GGG | 0.533776 | 5_2:-47389570 | None:intergenic |
| ATTACCAAAAGGATTCGTTA+CGG | 0.540975 | 5_2:-47390068 | None:intergenic |
| GCTAAACTAGCTCTCTCACT+AGG | 0.543046 | 5_2:+47389674 | Msa0772940:CDS |
| TGATGTGGGTCTTGATGGAA+TGG | 0.547316 | 5_2:+47390015 | Msa0772940:CDS |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_2:+47390221 | Msa0772940:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.566674 | 5_2:-47390169 | None:intergenic |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_2:-47389608 | None:intergenic |
| GGCTTATCCTGGTTATGCTG+GGG | 0.583253 | 5_2:+47390162 | Msa0772940:CDS |
| CAAGCTGAAGCAGCTTCCAA+AGG | 0.594382 | 5_2:-47390118 | None:intergenic |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_2:+47389923 | Msa0772940:CDS |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_2:+47389606 | Msa0772940:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_2:-47389967 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_2:+47389455 | Msa0772940:CDS |
| TTCCTCGTTTAGGAGAAGAG+AGG | 0.628736 | 5_2:-47389571 | None:intergenic |
| GTTATGATGACTCTTTGGGA+CGG | 0.628949 | 5_2:-47389533 | None:intergenic |
| TACCAATGTAGAACAAACTG+AGG | 0.629361 | 5_2:-47390278 | None:intergenic |
| GGTTGCACCAAATAATGATG+TGG | 0.630115 | 5_2:+47390000 | Msa0772940:CDS |
| TCGTTTAGGAGAAGAGAGGG+AGG | 0.643573 | 5_2:-47389567 | None:intergenic |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_2:-47389618 | None:intergenic |
| GGCAACTGATGGTTGTGACG+TGG | 0.693973 | 5_2:-47389597 | None:intergenic |
| GTTGCACCAAATAATGATGT+GGG | 0.702712 | 5_2:+47390001 | Msa0772940:CDS |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_2:+47389603 | Msa0772940:CDS |
| TCCCTCTCTTCTCCTAAACG+AGG | 0.714038 | 5_2:+47389569 | Msa0772940:CDS |
| AATGTGCTGGTCAATGCGCG+TGG | 0.729505 | 5_2:+47389936 | Msa0772940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_2:47389451-47389470 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_2:47389455-47389474 | Msa0772940:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_2:47389660-47389679 | None:intergenic | 25.0% |
| ! | AAACAAATTTGCGTACATTT+GGG | + | chr5_2:47389895-47389914 | Msa0772940:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_2:47390082-47390101 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_2:47390082-47390101 | Msa0772940:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_2:47389451-47389470 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_2:47389455-47389474 | Msa0772940:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_2:47389660-47389679 | None:intergenic | 25.0% |
| ! | AAACAAATTTGCGTACATTT+GGG | + | chr5_2:47389895-47389914 | Msa0772940:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_2:47390082-47390101 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_2:47390082-47390101 | Msa0772940:CDS | 25.0% |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_2:47389495-47389514 | Msa0772940:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_2:47389511-47389530 | None:intergenic | 30.0% |
| ATCAGTTATGATGACTCTTT+GGG | - | chr5_2:47389540-47389559 | None:intergenic | 30.0% | |
| AATCAGTTATGATGACTCTT+TGG | - | chr5_2:47389541-47389560 | None:intergenic | 30.0% | |
| !! | ACTTTTTATTGTTGGTGAGT+TGG | - | chr5_2:47389652-47389671 | None:intergenic | 30.0% |
| GAAACAAATTTGCGTACATT+TGG | + | chr5_2:47389894-47389913 | Msa0772940:CDS | 30.0% | |
| ATTACCAAAAGGATTCGTTA+CGG | - | chr5_2:47390071-47390090 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_2:47390217-47390236 | Msa0772940:CDS | 30.0% | |
| AAATCTCAATCAACCTCATT+TGG | + | chr5_2:47389495-47389514 | Msa0772940:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_2:47389511-47389530 | None:intergenic | 30.0% |
| ATCAGTTATGATGACTCTTT+GGG | - | chr5_2:47389540-47389559 | None:intergenic | 30.0% | |
| AATCAGTTATGATGACTCTT+TGG | - | chr5_2:47389541-47389560 | None:intergenic | 30.0% | |
| !! | ACTTTTTATTGTTGGTGAGT+TGG | - | chr5_2:47389652-47389671 | None:intergenic | 30.0% |
| GAAACAAATTTGCGTACATT+TGG | + | chr5_2:47389894-47389913 | Msa0772940:CDS | 30.0% | |
| ATTACCAAAAGGATTCGTTA+CGG | - | chr5_2:47390071-47390090 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_2:47390217-47390236 | Msa0772940:CDS | 30.0% | |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_2:47389441-47389460 | None:intergenic | 35.0% |
| ! | AGATTTTGTCAGTGAGAAGA+GGG | - | chr5_2:47389481-47389500 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_2:47389500-47389519 | Msa0772940:CDS | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_2:47389707-47389726 | Msa0772940:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_2:47389751-47389770 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_2:47389752-47389771 | Msa0772940:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_2:47389825-47389844 | Msa0772940:CDS | 35.0% |
| AAATTTGCGTACATTTGGGT+TGG | + | chr5_2:47389899-47389918 | Msa0772940:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_2:47389962-47389981 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_2:47389959-47389978 | Msa0772940:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_2:47389970-47389989 | None:intergenic | 35.0% | |
| !! | TCATTATTTGGTGCAACCAA+TGG | - | chr5_2:47389998-47390017 | None:intergenic | 35.0% |
| GTTGCACCAAATAATGATGT+GGG | + | chr5_2:47390001-47390020 | Msa0772940:CDS | 35.0% | |
| TCAAGACCCACATCATTATT+TGG | - | chr5_2:47390010-47390029 | None:intergenic | 35.0% | |
| AATAATGATGTGGGTCTTGA+TGG | + | chr5_2:47390010-47390029 | Msa0772940:CDS | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_2:47390043-47390062 | Msa0772940:CDS | 35.0% |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_2:47390070-47390089 | Msa0772940:CDS | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_2:47390139-47390158 | Msa0772940:CDS | 35.0% |
| ! | GTACTGGTGTTTATGCTAAA+GGG | + | chr5_2:47390140-47390159 | Msa0772940:CDS | 35.0% |
| TACTGGTGTTTATGCTAAAG+GGG | + | chr5_2:47390141-47390160 | Msa0772940:CDS | 35.0% | |
| ! | GTAGAACAAACTGAGGTTTT+AGG | - | chr5_2:47390274-47390293 | None:intergenic | 35.0% |
| ! | AACCTCAGTTTGTTCTACAT+TGG | + | chr5_2:47390276-47390295 | Msa0772940:CDS | 35.0% |
| TACCAATGTAGAACAAACTG+AGG | - | chr5_2:47390281-47390300 | None:intergenic | 35.0% | |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_2:47389441-47389460 | None:intergenic | 35.0% |
| ! | AGATTTTGTCAGTGAGAAGA+GGG | - | chr5_2:47389481-47389500 | None:intergenic | 35.0% |
| TCAATCAACCTCATTTGGTA+TGG | + | chr5_2:47389500-47389519 | Msa0772940:CDS | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_2:47389707-47389726 | Msa0772940:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | chr5_2:47389751-47389770 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | chr5_2:47389752-47389771 | Msa0772940:CDS | 35.0% | |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_2:47389825-47389844 | Msa0772940:CDS | 35.0% |
| AAATTTGCGTACATTTGGGT+TGG | + | chr5_2:47389899-47389918 | Msa0772940:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_2:47389962-47389981 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_2:47389959-47389978 | Msa0772940:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_2:47389970-47389989 | None:intergenic | 35.0% | |
| !! | TCATTATTTGGTGCAACCAA+TGG | - | chr5_2:47389998-47390017 | None:intergenic | 35.0% |
| GTTGCACCAAATAATGATGT+GGG | + | chr5_2:47390001-47390020 | Msa0772940:CDS | 35.0% | |
| TCAAGACCCACATCATTATT+TGG | - | chr5_2:47390010-47390029 | None:intergenic | 35.0% | |
| AATAATGATGTGGGTCTTGA+TGG | + | chr5_2:47390010-47390029 | Msa0772940:CDS | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_2:47390043-47390062 | Msa0772940:CDS | 35.0% |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | chr5_2:47390070-47390089 | Msa0772940:CDS | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_2:47390139-47390158 | Msa0772940:CDS | 35.0% |
| ! | GTACTGGTGTTTATGCTAAA+GGG | + | chr5_2:47390140-47390159 | Msa0772940:CDS | 35.0% |
| TACTGGTGTTTATGCTAAAG+GGG | + | chr5_2:47390141-47390160 | Msa0772940:CDS | 35.0% | |
| ! | GTAGAACAAACTGAGGTTTT+AGG | - | chr5_2:47390274-47390293 | None:intergenic | 35.0% |
| ! | AACCTCAGTTTGTTCTACAT+TGG | + | chr5_2:47390276-47390295 | Msa0772940:CDS | 35.0% |
| TACCAATGTAGAACAAACTG+AGG | - | chr5_2:47390281-47390300 | None:intergenic | 35.0% | |
| TGCAAGAAAACTCACCGAAT+CGG | + | chr5_2:47389424-47389443 | Msa0772940:CDS | 40.0% | |
| ! | GAGATTTTGTCAGTGAGAAG+AGG | - | chr5_2:47389482-47389501 | None:intergenic | 40.0% |
| ! | GTTATGATGACTCTTTGGGA+CGG | - | chr5_2:47389536-47389555 | None:intergenic | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_2:47389757-47389776 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_2:47389830-47389849 | Msa0772940:CDS | 40.0% |
| GGAACTCATGGTTCTTCTTA+TGG | + | chr5_2:47389851-47389870 | Msa0772940:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_2:47389923-47389942 | Msa0772940:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_2:47389974-47389993 | None:intergenic | 40.0% | |
| GGTTGCACCAAATAATGATG+TGG | + | chr5_2:47390000-47390019 | Msa0772940:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_2:47390189-47390208 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_2:47390187-47390206 | Msa0772940:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_2:47390221-47390240 | Msa0772940:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_2:47390259-47390278 | None:intergenic | 40.0% |
| TGCAAGAAAACTCACCGAAT+CGG | + | chr5_2:47389424-47389443 | Msa0772940:CDS | 40.0% | |
| ! | GAGATTTTGTCAGTGAGAAG+AGG | - | chr5_2:47389482-47389501 | None:intergenic | 40.0% |
| ! | GTTATGATGACTCTTTGGGA+CGG | - | chr5_2:47389536-47389555 | None:intergenic | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | chr5_2:47389757-47389776 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_2:47389830-47389849 | Msa0772940:CDS | 40.0% |
| GGAACTCATGGTTCTTCTTA+TGG | + | chr5_2:47389851-47389870 | Msa0772940:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_2:47389923-47389942 | Msa0772940:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_2:47389974-47389993 | None:intergenic | 40.0% | |
| GGTTGCACCAAATAATGATG+TGG | + | chr5_2:47390000-47390019 | Msa0772940:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_2:47390189-47390208 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_2:47390187-47390206 | Msa0772940:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_2:47390221-47390240 | Msa0772940:CDS | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | chr5_2:47390259-47390278 | None:intergenic | 40.0% |
| TCCTCGTTTAGGAGAAGAGA+GGG | - | chr5_2:47389573-47389592 | None:intergenic | 45.0% | |
| TTCCTCGTTTAGGAGAAGAG+AGG | - | chr5_2:47389574-47389593 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_2:47389621-47389640 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_2:47389674-47389693 | Msa0772940:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | chr5_2:47389792-47389811 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | chr5_2:47389805-47389824 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_2:47389809-47389828 | Msa0772940:CDS | 45.0% | |
| TCAAGTAGGTGTGGAACTCA+TGG | + | chr5_2:47389839-47389858 | Msa0772940:CDS | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_2:47389866-47389885 | Msa0772940:CDS | 45.0% | |
| TGATGTGGGTCTTGATGGAA+TGG | + | chr5_2:47390015-47390034 | Msa0772940:CDS | 45.0% | |
| ! | GGAACCGTAACGAATCCTTT+TGG | + | chr5_2:47390064-47390083 | Msa0772940:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_2:47390102-47390121 | Msa0772940:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_2:47390109-47390128 | None:intergenic | 45.0% |
| TATGCTAAAGGGGCTTATCC+TGG | + | chr5_2:47390151-47390170 | Msa0772940:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_2:47390208-47390227 | Msa0772940:CDS | 45.0% | |
| TCCTCGTTTAGGAGAAGAGA+GGG | - | chr5_2:47389573-47389592 | None:intergenic | 45.0% | |
| TTCCTCGTTTAGGAGAAGAG+AGG | - | chr5_2:47389574-47389593 | None:intergenic | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_2:47389621-47389640 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_2:47389674-47389693 | Msa0772940:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | chr5_2:47389792-47389811 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | chr5_2:47389805-47389824 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_2:47389809-47389828 | Msa0772940:CDS | 45.0% | |
| TCAAGTAGGTGTGGAACTCA+TGG | + | chr5_2:47389839-47389858 | Msa0772940:CDS | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_2:47389866-47389885 | Msa0772940:CDS | 45.0% | |
| TGATGTGGGTCTTGATGGAA+TGG | + | chr5_2:47390015-47390034 | Msa0772940:CDS | 45.0% | |
| ! | GGAACCGTAACGAATCCTTT+TGG | + | chr5_2:47390064-47390083 | Msa0772940:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_2:47390102-47390121 | Msa0772940:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_2:47390109-47390128 | None:intergenic | 45.0% |
| TATGCTAAAGGGGCTTATCC+TGG | + | chr5_2:47390151-47390170 | Msa0772940:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_2:47390208-47390227 | Msa0772940:CDS | 45.0% | |
| TCGTTTAGGAGAAGAGAGGG+AGG | - | chr5_2:47389570-47389589 | None:intergenic | 50.0% | |
| TCCCTCTCTTCTCCTAAACG+AGG | + | chr5_2:47389569-47389588 | Msa0772940:CDS | 50.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | - | chr5_2:47389584-47389603 | None:intergenic | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_2:47389979-47389998 | Msa0772940:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_2:47389986-47390005 | None:intergenic | 50.0% | |
| CAAGCTGAAGCAGCTTCCAA+AGG | - | chr5_2:47390121-47390140 | None:intergenic | 50.0% | |
| GAAGCTGCTTCAGCTTGTAC+TGG | + | chr5_2:47390124-47390143 | Msa0772940:CDS | 50.0% | |
| GGGCTTATCCTGGTTATGCT+GGG | + | chr5_2:47390161-47390180 | Msa0772940:CDS | 50.0% | |
| GGCTTATCCTGGTTATGCTG+GGG | + | chr5_2:47390162-47390181 | Msa0772940:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_2:47390172-47390191 | None:intergenic | 50.0% | |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | chr5_2:47390171-47390190 | Msa0772940:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | chr5_2:47390174-47390193 | Msa0772940:CDS | 50.0% |
| TCGTTTAGGAGAAGAGAGGG+AGG | - | chr5_2:47389570-47389589 | None:intergenic | 50.0% | |
| TCCCTCTCTTCTCCTAAACG+AGG | + | chr5_2:47389569-47389588 | Msa0772940:CDS | 50.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | - | chr5_2:47389584-47389603 | None:intergenic | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_2:47389979-47389998 | Msa0772940:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_2:47389986-47390005 | None:intergenic | 50.0% | |
| CAAGCTGAAGCAGCTTCCAA+AGG | - | chr5_2:47390121-47390140 | None:intergenic | 50.0% | |
| GAAGCTGCTTCAGCTTGTAC+TGG | + | chr5_2:47390124-47390143 | Msa0772940:CDS | 50.0% | |
| GGGCTTATCCTGGTTATGCT+GGG | + | chr5_2:47390161-47390180 | Msa0772940:CDS | 50.0% | |
| GGCTTATCCTGGTTATGCTG+GGG | + | chr5_2:47390162-47390181 | Msa0772940:CDS | 50.0% | |
| AAAAGGTCCCCAGCATAACC+AGG | - | chr5_2:47390172-47390191 | None:intergenic | 50.0% | |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | chr5_2:47390171-47390190 | Msa0772940:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | chr5_2:47390174-47390193 | Msa0772940:CDS | 50.0% |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_2:47389472-47389491 | None:intergenic | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_2:47389600-47389619 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_2:47389603-47389622 | Msa0772940:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_2:47389606-47389625 | Msa0772940:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_2:47389611-47389630 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_2:47389936-47389955 | Msa0772940:CDS | 55.0% |
| GGGGCTTATCCTGGTTATGC+TGG | + | chr5_2:47390160-47390179 | Msa0772940:CDS | 55.0% | |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_2:47389472-47389491 | None:intergenic | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_2:47389600-47389619 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_2:47389603-47389622 | Msa0772940:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_2:47389606-47389625 | Msa0772940:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_2:47389611-47389630 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_2:47389936-47389955 | Msa0772940:CDS | 55.0% |
| GGGGCTTATCCTGGTTATGC+TGG | + | chr5_2:47390160-47390179 | Msa0772940:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47389353 | 47390312 | 47389353 | ID=Msa0772940;Name=Msa0772940 |
| chr5_2 | mRNA | 47389353 | 47390312 | 47389353 | ID=Msa0772940-mRNA-1;Parent=Msa0772940;Name=Msa0772940-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|319 |
| chr5_2 | exon | 47389353 | 47390312 | 47389353 | ID=Msa0772940-mRNA-1:exon:14235;Parent=Msa0772940-mRNA-1 |
| chr5_2 | CDS | 47389353 | 47390312 | 47389353 | ID=Msa0772940-mRNA-1:cds;Parent=Msa0772940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
