Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775720 | sp|P32291|FAD3E_VIGRR | 73.315 | 356 | 64 | 1 | 30 | 354 | 18 | 373 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775720 | G7JZI3 | 87.724 | 391 | 15 | 2 | 1 | 358 | 1 | 391 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0734300 | Msa0775720 | 0.836888 | 7.187826e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775720 | MtrunA17_Chr5g0430241 | 87.724 | 391 | 15 | 2 | 1 | 358 | 1 | 391 | 0.0 | 697 |
| Msa0775720 | MtrunA17_Chr3g0105171 | 70.248 | 363 | 77 | 1 | 24 | 355 | 17 | 379 | 0.0 | 509 |
| Msa0775720 | MtrunA17_Chr7g0242601 | 66.477 | 352 | 87 | 1 | 33 | 353 | 89 | 440 | 0.0 | 508 |
| Msa0775720 | MtrunA17_Chr4g0006241 | 67.330 | 352 | 84 | 1 | 33 | 353 | 83 | 434 | 5.48e-172 | 486 |
| Msa0775720 | MtrunA17_Chr1g0175301 | 35.671 | 328 | 162 | 6 | 30 | 310 | 20 | 345 | 1.63e-63 | 207 |
| Msa0775720 | MtrunA17_Chr7g0258651 | 37.500 | 328 | 153 | 9 | 36 | 314 | 25 | 349 | 1.42e-61 | 202 |
| Msa0775720 | MtrunA17_Chr1g0210511 | 37.991 | 229 | 100 | 5 | 123 | 311 | 15 | 241 | 1.48e-38 | 139 |
| Msa0775720 | MtrunA17_Chr4g0074071 | 26.480 | 321 | 185 | 10 | 29 | 312 | 91 | 397 | 1.04e-25 | 107 |
| Msa0775720 | MtrunA17_Chr2g0305881 | 29.752 | 121 | 84 | 1 | 29 | 149 | 89 | 208 | 1.40e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775720 | AT5G05580.1 | 66.384 | 354 | 88 | 1 | 33 | 355 | 80 | 433 | 2.21e-179 | 504 |
| Msa0775720 | AT3G11170.1 | 65.819 | 354 | 90 | 1 | 30 | 352 | 84 | 437 | 4.88e-176 | 496 |
| Msa0775720 | AT2G29980.1 | 66.667 | 351 | 86 | 1 | 33 | 352 | 25 | 375 | 6.14e-170 | 479 |
| Msa0775720 | AT5G05580.2 | 66.555 | 299 | 69 | 1 | 33 | 300 | 80 | 378 | 1.22e-148 | 424 |
| Msa0775720 | AT2G29980.2 | 64.143 | 251 | 59 | 1 | 33 | 252 | 25 | 275 | 9.08e-109 | 320 |
| Msa0775720 | AT3G12120.1 | 35.802 | 324 | 157 | 8 | 36 | 311 | 25 | 345 | 1.11e-61 | 202 |
| Msa0775720 | AT3G12120.2 | 35.802 | 324 | 157 | 8 | 36 | 311 | 25 | 345 | 1.11e-61 | 202 |
| Msa0775720 | AT4G30950.1 | 25.749 | 334 | 193 | 9 | 11 | 309 | 82 | 395 | 5.23e-26 | 108 |
Find 75 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTTGAGTTATGTTCTT+AGG | 0.111843 | 5_2:-52837408 | Msa0775720:CDS |
| TAAAATCTACGGTTATATTT+TGG | 0.150055 | 5_2:-52835403 | Msa0775720:intron |
| CTTATTCATTGTGCTTCTTT+TGG | 0.180794 | 5_2:+52835475 | None:intergenic |
| CTCTTCAAGGCACAATGTTT+TGG | 0.195045 | 5_2:-52837309 | Msa0775720:CDS |
| GTTTGCATATCCAATTTATT+TGG | 0.197044 | 5_2:-52836627 | Msa0775720:intron |
| TGTTATGTAGTTACTCTTAA+TGG | 0.206096 | 5_2:-52835219 | Msa0775720:three_prime_UTR |
| CTAATATCTGCTATCTTAAA+TGG | 0.240528 | 5_2:+52837472 | None:intergenic |
| TTCTTAACCCAACAATGTTT+TGG | 0.291986 | 5_2:+52837439 | None:intergenic |
| TCAATTCTTGTTCCTTATCA+TGG | 0.324234 | 5_2:-52837072 | Msa0775720:CDS |
| CGCTATTCCAAAACATTGTT+GGG | 0.334170 | 5_2:-52837446 | Msa0775720:CDS |
| TGGTTACAACCATTGTTTCT+TGG | 0.351671 | 5_2:+52837539 | None:intergenic |
| CCTTGAAGAGGCCAATAAAT+TGG | 0.355834 | 5_2:+52837322 | None:intergenic |
| AAGCTTCTCAGATAGTTCTT+TGG | 0.357997 | 5_2:-52837127 | Msa0775720:CDS |
| AAGTATTTAATTAGTTGAAA+TGG | 0.361740 | 5_2:+52835573 | None:intergenic |
| CCGCTATTCCAAAACATTGT+TGG | 0.368317 | 5_2:-52837447 | Msa0775720:CDS |
| CCAATTTATTGGCCTCTTCA+AGG | 0.375978 | 5_2:-52837322 | Msa0775720:CDS |
| GGGTGAGAACAAGTCGCTAT+AGG | 0.376935 | 5_2:+52836448 | None:intergenic |
| AGTAGAAGTCCTGGAAAATC+AGG | 0.381452 | 5_2:-52836485 | Msa0775720:CDS |
| GAATTGAGGAATGCAAAATA+TGG | 0.383781 | 5_2:+52837088 | None:intergenic |
| ATCTTTGAGTTATGTTCTTA+GGG | 0.388238 | 5_2:-52837407 | Msa0775720:CDS |
| ACAACAGTTGATCGTGACTA+TGG | 0.390768 | 5_2:-52835889 | Msa0775720:CDS |
| TTCTTTGGTGAATAACTTTG+TGG | 0.401476 | 5_2:-52837112 | Msa0775720:CDS |
| TTCAGATATGTGGTGAATAG+AGG | 0.413103 | 5_2:+52837579 | None:intergenic |
| GTTGGTAGTTGCTGCATTGA+TGG | 0.420417 | 5_2:-52837380 | Msa0775720:CDS |
| GGTGAGAACAAGTCGCTATA+GGG | 0.420549 | 5_2:+52836449 | None:intergenic |
| CATCCTTCTCAACATTTCCA+TGG | 0.444146 | 5_2:+52836899 | None:intergenic |
| CTGCAACTCGGTTTGATAGC+TGG | 0.459516 | 5_2:-52837354 | Msa0775720:CDS |
| AGGTGATAATGAGGAATTTG+AGG | 0.460595 | 5_2:+52835811 | None:intergenic |
| ATTATCTTAGTTGACAGAAA+AGG | 0.475863 | 5_2:-52836708 | Msa0775720:intron |
| GTCACATACTTGCACCATCA+TGG | 0.478383 | 5_2:-52836092 | Msa0775720:CDS |
| TTCTTGTTCCTTATCATGGA+TGG | 0.478850 | 5_2:-52837068 | Msa0775720:intron |
| CACTAGGGTCAAATTCACTA+TGG | 0.482540 | 5_2:+52837503 | None:intergenic |
| AGTTGTGGTTTATGTTTGCT+AGG | 0.483165 | 5_2:-52835362 | Msa0775720:three_prime_UTR |
| TTAAATGGTGGAGGAGCACT+AGG | 0.483704 | 5_2:+52837487 | None:intergenic |
| TCTTTGGTGAATAACTTTGT+GGG | 0.492978 | 5_2:-52837111 | Msa0775720:CDS |
| TTCACTAACCATCCATGATA+AGG | 0.496041 | 5_2:+52837060 | None:intergenic |
| TTAATTAGTTGAAATGGAAG+TGG | 0.500852 | 5_2:+52835579 | None:intergenic |
| GGATATGCAAACAATGGTAA+AGG | 0.503671 | 5_2:+52836638 | None:intergenic |
| AACTATCTGAGAAGCTTCCA+TGG | 0.506224 | 5_2:+52837133 | None:intergenic |
| GGTGATAATGAGGAATTTGA+GGG | 0.507016 | 5_2:+52835812 | None:intergenic |
| AAAGAATGGGTGTCACTGCT+TGG | 0.522059 | 5_2:-52835309 | Msa0775720:three_prime_UTR |
| TTTCAGTGGAGTAGAAGTCC+TGG | 0.522116 | 5_2:-52836494 | Msa0775720:intron |
| ACTATGGTTGTAGCCACCAT+TGG | 0.526256 | 5_2:+52837519 | None:intergenic |
| TCATTATCACCTTGTTGAAG+CGG | 0.530017 | 5_2:-52835800 | Msa0775720:intron |
| AATAATATTCATCATGACAT+TGG | 0.533900 | 5_2:-52835859 | Msa0775720:CDS |
| TTATGTTCTTAGGGATGTGT+TGG | 0.534219 | 5_2:-52837398 | Msa0775720:CDS |
| CAAAACATTGTGCCTTGAAG+AGG | 0.537908 | 5_2:+52837310 | None:intergenic |
| CATTGATGGTAGCTGCAACT+CGG | 0.542877 | 5_2:-52837366 | Msa0775720:CDS |
| ATGATAAGGAACAAGAATTG+AGG | 0.557614 | 5_2:+52837074 | None:intergenic |
| CAGTTGATCGTGACTATGGT+TGG | 0.558183 | 5_2:-52835885 | Msa0775720:CDS |
| TCTGCTATCTTAAATGGTGG+AGG | 0.559855 | 5_2:+52837478 | None:intergenic |
| GAAACAATGGTTGTAACCAA+TGG | 0.561552 | 5_2:-52837535 | Msa0775720:CDS |
| TGTTGAGAAGGATGAGTCAT+GGG | 0.562849 | 5_2:-52836890 | Msa0775720:CDS |
| GATCACTTCGTAAGTGACAC+TGG | 0.567578 | 5_2:-52835531 | Msa0775720:CDS |
| CAGGAATGGAGTTATCTAAG+AGG | 0.577271 | 5_2:-52835919 | Msa0775720:CDS |
| AAACCATGGAAATGTTGAGA+AGG | 0.578515 | 5_2:-52836902 | Msa0775720:CDS |
| ATGTTGAGAAGGATGAGTCA+TGG | 0.582381 | 5_2:-52836891 | Msa0775720:CDS |
| GCTTCAACAAGGTGATAATG+AGG | 0.594371 | 5_2:+52835802 | None:intergenic |
| TTTACCTTGCCACGGTACCA+TGG | 0.598110 | 5_2:+52836053 | None:intergenic |
| AAAACACATCATCAAAACCA+TGG | 0.601612 | 5_2:-52836916 | Msa0775720:CDS |
| TAAATTGGATATGCAAACAA+TGG | 0.608374 | 5_2:+52836632 | None:intergenic |
| AACACTAGGCCAAGAAACAA+TGG | 0.614089 | 5_2:-52837548 | Msa0775720:CDS |
| ATTGTTGGGTTAAGAACACA+TGG | 0.614576 | 5_2:-52837432 | Msa0775720:CDS |
| GAATGGAGTTATCTAAGAGG+TGG | 0.617906 | 5_2:-52835916 | Msa0775720:CDS |
| ATATCTGCTATCTTAAATGG+TGG | 0.622664 | 5_2:+52837475 | None:intergenic |
| ACAATGGTTGTAACCAATGG+TGG | 0.624372 | 5_2:-52837532 | Msa0775720:CDS |
| ATTACCATGGTACCGTGGCA+AGG | 0.629596 | 5_2:-52836057 | Msa0775720:intron |
| CAATGAGAGAAAAGAAGTGA+CGG | 0.642724 | 5_2:-52836426 | Msa0775720:CDS |
| TTTGTTTGGAATAGTGGCCA+TGG | 0.643837 | 5_2:-52837150 | Msa0775720:intron |
| GTAGAAGTCCTGGAAAATCA+GGG | 0.649940 | 5_2:-52836484 | Msa0775720:CDS |
| AAGTAATTACCGCTTCAACA+AGG | 0.661057 | 5_2:+52835791 | None:intergenic |
| ATTTCTGCGTGTAACCATGA+TGG | 0.688984 | 5_2:+52836078 | None:intergenic |
| CAGAAATTACCATGGTACCG+TGG | 0.699527 | 5_2:-52836062 | Msa0775720:CDS |
| TAAATGGTGGAGGAGCACTA+GGG | 0.705178 | 5_2:+52837488 | None:intergenic |
| GTTACACGCAGAAATTACCA+TGG | 0.733077 | 5_2:-52836070 | Msa0775720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTCATAATATTTTTTTTTT+TGG | - | chr5_2:52836024-52836043 | Msa0775720:intron | 10.0% |
| !! | TATAATAATCATTTATAAGA+CGG | + | chr5_2:52836601-52836620 | None:intergenic | 10.0% |
| !!! | TTATTTTTAATTTTGCTTTT+TGG | - | chr5_2:52837513-52837532 | Msa0775720:CDS | 10.0% |
| !! | GTTAAAAATATTTCATCTTA+TGG | - | chr5_2:52835148-52835167 | Msa0775720:three_prime_UTR | 15.0% |
| !!! | TTCATTTTTAAATGCATTTT+TGG | - | chr5_2:52836468-52836487 | Msa0775720:CDS | 15.0% |
| !! | AAGTATTTAATTAGTTGAAA+TGG | + | chr5_2:52837189-52837208 | None:intergenic | 15.0% |
| !! | TATCTACTTTATAAAAAGAA+TGG | - | chr5_2:52837436-52837455 | Msa0775720:CDS | 15.0% |
| !! | ATCTACTTTATAAAAAGAAT+GGG | - | chr5_2:52837437-52837456 | Msa0775720:CDS | 15.0% |
| !! | TATGTTAATGTTATGTCATA+TGG | - | chr5_2:52835546-52835565 | Msa0775720:CDS | 20.0% |
| !! | TCAATAAATAAATCACATAC+TGG | + | chr5_2:52835897-52835916 | None:intergenic | 20.0% |
| !!! | TTATATCATATGCATAGTTT+TGG | - | chr5_2:52835947-52835966 | Msa0775720:intron | 20.0% |
| !! | AAAAAACTCACCAAATAAAT+TGG | + | chr5_2:52836145-52836164 | None:intergenic | 20.0% |
| !! | TAAAGTTTGAGAATTAAAAG+TGG | + | chr5_2:52836421-52836440 | None:intergenic | 20.0% |
| !!! | CTTTTAATTCTCAAACTTTA+TGG | - | chr5_2:52836421-52836440 | Msa0775720:CDS | 20.0% |
| !! | ATAAACAATTGAATGATTGA+AGG | + | chr5_2:52836750-52836769 | None:intergenic | 20.0% |
| !! | AATTGTTTATGTGCATAATT+AGG | - | chr5_2:52836760-52836779 | Msa0775720:intron | 20.0% |
| !! | AATAATATTCATCATGACAT+TGG | - | chr5_2:52836900-52836919 | Msa0775720:CDS | 20.0% |
| !!! | TAAAATCTACGGTTATATTT+TGG | - | chr5_2:52837356-52837375 | Msa0775720:CDS | 20.0% |
| !! | TACTTAGAGACAAAAATATT+TGG | - | chr5_2:52837486-52837505 | Msa0775720:CDS | 20.0% |
| !!! | TTTCTCTTTTTTCAGATATG+TGG | + | chr5_2:52835193-52835212 | None:intergenic | 25.0% |
| ! | CTAATATCTGCTATCTTAAA+TGG | + | chr5_2:52835290-52835309 | None:intergenic | 25.0% |
| !! | ATCTTTGAGTTATGTTCTTA+GGG | - | chr5_2:52835352-52835371 | Msa0775720:three_prime_UTR | 25.0% |
| !! | TTTGCTTGAATGAATTTTTC+AGG | - | chr5_2:52835808-52835827 | Msa0775720:CDS | 25.0% |
| ! | ATTATCTTAGTTGACAGAAA+AGG | - | chr5_2:52836051-52836070 | Msa0775720:intron | 25.0% |
| ! | TAAATTGGATATGCAAACAA+TGG | + | chr5_2:52836130-52836149 | None:intergenic | 25.0% |
| ! | GTTTGCATATCCAATTTATT+TGG | - | chr5_2:52836132-52836151 | Msa0775720:intron | 25.0% |
| ! | GTTTCGATAAACGATAAATT+TGG | + | chr5_2:52836577-52836596 | None:intergenic | 25.0% |
| !!! | ATTATATTTTTACCTTGCCA+CGG | + | chr5_2:52836717-52836736 | None:intergenic | 25.0% |
| ! | TTGGTTAGAGAACTAAAAAT+AGG | + | chr5_2:52837013-52837032 | None:intergenic | 25.0% |
| ! | TTAATTAGTTGAAATGGAAG+TGG | + | chr5_2:52837183-52837202 | None:intergenic | 25.0% |
| !!! | CAATGAATAAGTCACTTTTT+TGG | - | chr5_2:52837296-52837315 | Msa0775720:CDS | 25.0% |
| ! | TGTTATGTAGTTACTCTTAA+TGG | - | chr5_2:52837540-52837559 | Msa0775720:CDS | 25.0% |
| TCTGAAAAAAGAGAAACACT+AGG | - | chr5_2:52835197-52835216 | Msa0775720:three_prime_UTR | 30.0% | |
| ATATCTGCTATCTTAAATGG+TGG | + | chr5_2:52835287-52835306 | None:intergenic | 30.0% | |
| ! | TTCTTAACCCAACAATGTTT+TGG | + | chr5_2:52835323-52835342 | None:intergenic | 30.0% |
| ! | GATCTTTGAGTTATGTTCTT+AGG | - | chr5_2:52835351-52835370 | Msa0775720:three_prime_UTR | 30.0% |
| !!! | GGTATTTTTGGCCAATTTAT+TGG | - | chr5_2:52835426-52835445 | Msa0775720:intron | 30.0% |
| ! | TTTTGGGCAATTTTTGTTCT+TGG | - | chr5_2:52835467-52835486 | Msa0775720:exon | 30.0% |
| ! | TTTTTGTTCTTGGACATGAT+TGG | - | chr5_2:52835477-52835496 | Msa0775720:CDS | 30.0% |
| !!! | TGATGTTTTGTTTGGAATAG+TGG | - | chr5_2:52835603-52835622 | Msa0775720:CDS | 30.0% |
| TTCTTTGGTGAATAACTTTG+TGG | - | chr5_2:52835647-52835666 | Msa0775720:intron | 30.0% | |
| TCTTTGGTGAATAACTTTGT+GGG | - | chr5_2:52835648-52835667 | Msa0775720:intron | 30.0% | |
| GAATTGAGGAATGCAAAATA+TGG | + | chr5_2:52835674-52835693 | None:intergenic | 30.0% | |
| ATGATAAGGAACAAGAATTG+AGG | + | chr5_2:52835688-52835707 | None:intergenic | 30.0% | |
| TCAATTCTTGTTCCTTATCA+TGG | - | chr5_2:52835687-52835706 | Msa0775720:intron | 30.0% | |
| ! | TCAAAGTAAAGTTTTACCCA+TGG | + | chr5_2:52835765-52835784 | None:intergenic | 30.0% |
| AAAACACATCATCAAAACCA+TGG | - | chr5_2:52835843-52835862 | Msa0775720:CDS | 30.0% | |
| !!! | TATCATATGCATAGTTTTGG+TGG | - | chr5_2:52835950-52835969 | Msa0775720:intron | 30.0% |
| TGTCATGTTTAATGTTTCAG+TGG | - | chr5_2:52836251-52836270 | Msa0775720:intron | 30.0% | |
| GAAAGTAACTTTACCCAATA+GGG | + | chr5_2:52836451-52836470 | None:intergenic | 30.0% | |
| TGAAAGTAACTTTACCCAAT+AGG | + | chr5_2:52836452-52836471 | None:intergenic | 30.0% | |
| ! | AAAGCAGCAAAACCAATTTT+TGG | - | chr5_2:52837126-52837145 | Msa0775720:CDS | 30.0% |
| ! | CTTATTCATTGTGCTTCTTT+TGG | + | chr5_2:52837287-52837306 | None:intergenic | 30.0% |
| TTCAGATATGTGGTGAATAG+AGG | + | chr5_2:52835183-52835202 | None:intergenic | 35.0% | |
| ! | TGGTTACAACCATTGTTTCT+TGG | + | chr5_2:52835223-52835242 | None:intergenic | 35.0% |
| GAAACAATGGTTGTAACCAA+TGG | - | chr5_2:52835224-52835243 | Msa0775720:three_prime_UTR | 35.0% | |
| !!! | CCAACAATGTTTTGGAATAG+CGG | + | chr5_2:52835315-52835334 | None:intergenic | 35.0% |
| CGCTATTCCAAAACATTGTT+GGG | - | chr5_2:52835313-52835332 | Msa0775720:three_prime_UTR | 35.0% | |
| ATTGTTGGGTTAAGAACACA+TGG | - | chr5_2:52835327-52835346 | Msa0775720:three_prime_UTR | 35.0% | |
| TTATGTTCTTAGGGATGTGT+TGG | - | chr5_2:52835361-52835380 | Msa0775720:three_prime_UTR | 35.0% | |
| !! | GGTTTGATAGCTGGTATTTT+TGG | - | chr5_2:52835414-52835433 | Msa0775720:intron | 35.0% |
| ! | TCTTCAAGGCACAATGTTTT+GGG | - | chr5_2:52835451-52835470 | Msa0775720:three_prime_UTR | 35.0% |
| !! | GCGAACATTGATGTTTTGTT+TGG | - | chr5_2:52835595-52835614 | Msa0775720:CDS | 35.0% |
| AAGCTTCTCAGATAGTTCTT+TGG | - | chr5_2:52835632-52835651 | Msa0775720:CDS | 35.0% | |
| TTCTTGTTCCTTATCATGGA+TGG | - | chr5_2:52835691-52835710 | Msa0775720:intron | 35.0% | |
| TTCACTAACCATCCATGATA+AGG | + | chr5_2:52835702-52835721 | None:intergenic | 35.0% | |
| !! | TTGTCCATGTTTTTGTTCCA+TGG | - | chr5_2:52835745-52835764 | Msa0775720:intron | 35.0% |
| !! | TGTCCATGTTTTTGTTCCAT+GGG | - | chr5_2:52835746-52835765 | Msa0775720:intron | 35.0% |
| TTACCCATGGAACAAAAACA+TGG | + | chr5_2:52835752-52835771 | None:intergenic | 35.0% | |
| AAACCATGGAAATGTTGAGA+AGG | - | chr5_2:52835857-52835876 | Msa0775720:CDS | 35.0% | |
| GGATATGCAAACAATGGTAA+AGG | + | chr5_2:52836124-52836143 | None:intergenic | 35.0% | |
| ! | GTCACTTCTTTTCTCTCATT+GGG | + | chr5_2:52836334-52836353 | None:intergenic | 35.0% |
| CAATGAGAGAAAAGAAGTGA+CGG | - | chr5_2:52836333-52836352 | Msa0775720:intron | 35.0% | |
| !! | TAAAAGTGGACTAGTTGTGA+AGG | + | chr5_2:52836407-52836426 | None:intergenic | 35.0% |
| AACTTTATGGAGTTCCCTAT+TGG | - | chr5_2:52836434-52836453 | Msa0775720:CDS | 35.0% | |
| ACTTTATGGAGTTCCCTATT+GGG | - | chr5_2:52836435-52836454 | Msa0775720:CDS | 35.0% | |
| ! | AACTGCAGATTTTTGTCATG+TGG | - | chr5_2:52836635-52836654 | Msa0775720:CDS | 35.0% |
| ATCAGACTCAACAAGATTTG+AGG | + | chr5_2:52836796-52836815 | None:intergenic | 35.0% | |
| ACTCACTCATGTGTACAATT+CGG | - | chr5_2:52836817-52836836 | Msa0775720:intron | 35.0% | |
| ! | GGTGATAATGAGGAATTTGA+GGG | + | chr5_2:52836950-52836969 | None:intergenic | 35.0% |
| ! | AGGTGATAATGAGGAATTTG+AGG | + | chr5_2:52836951-52836970 | None:intergenic | 35.0% |
| TCATTATCACCTTGTTGAAG+CGG | - | chr5_2:52836959-52836978 | Msa0775720:intron | 35.0% | |
| AAGTAATTACCGCTTCAACA+AGG | + | chr5_2:52836971-52836990 | None:intergenic | 35.0% | |
| GTTGAAGCGGTAATTACTTA+CGG | - | chr5_2:52836972-52836991 | Msa0775720:intron | 35.0% | |
| CATCTTACGTAAGAAATGAC+CGG | + | chr5_2:52837049-52837068 | None:intergenic | 35.0% | |
| TCAAAAACACGGGTAAGTTT+AGG | + | chr5_2:52837093-52837112 | None:intergenic | 35.0% | |
| TCTGCAATGAGTCAAAAACA+CGG | + | chr5_2:52837104-52837123 | None:intergenic | 35.0% | |
| CGGTAATAGTCTCCAAAAAT+TGG | + | chr5_2:52837141-52837160 | None:intergenic | 35.0% | |
| !!! | GTGATGATTTTTCTGGTTCA+CGG | + | chr5_2:52837161-52837180 | None:intergenic | 35.0% |
| !!! | ACGGTTATATTTTGGAGTTG+TGG | - | chr5_2:52837364-52837383 | Msa0775720:CDS | 35.0% |
| ! | TGTGGTTCATTTTGTAGTTG+TGG | - | chr5_2:52837382-52837401 | Msa0775720:CDS | 35.0% |
| AGTTGTGGTTTATGTTTGCT+AGG | - | chr5_2:52837397-52837416 | Msa0775720:CDS | 35.0% | |
| AACACTAGGCCAAGAAACAA+TGG | - | chr5_2:52835211-52835230 | Msa0775720:three_prime_UTR | 40.0% | |
| ACAATGGTTGTAACCAATGG+TGG | - | chr5_2:52835227-52835246 | Msa0775720:three_prime_UTR | 40.0% | |
| CACTAGGGTCAAATTCACTA+TGG | + | chr5_2:52835259-52835278 | None:intergenic | 40.0% | |
| TCTGCTATCTTAAATGGTGG+AGG | + | chr5_2:52835284-52835303 | None:intergenic | 40.0% | |
| CCGCTATTCCAAAACATTGT+TGG | - | chr5_2:52835312-52835331 | Msa0775720:three_prime_UTR | 40.0% | |
| CCTTGAAGAGGCCAATAAAT+TGG | + | chr5_2:52835440-52835459 | None:intergenic | 40.0% | |
| ! | CCAATTTATTGGCCTCTTCA+AGG | - | chr5_2:52835437-52835456 | Msa0775720:three_prime_UTR | 40.0% |
| CAAAACATTGTGCCTTGAAG+AGG | + | chr5_2:52835452-52835471 | None:intergenic | 40.0% | |
| ! | CTCTTCAAGGCACAATGTTT+TGG | - | chr5_2:52835450-52835469 | Msa0775720:three_prime_UTR | 40.0% |
| ! | TTTGTTTGGAATAGTGGCCA+TGG | - | chr5_2:52835609-52835628 | Msa0775720:CDS | 40.0% |
| AACTATCTGAGAAGCTTCCA+TGG | + | chr5_2:52835629-52835648 | None:intergenic | 40.0% | |
| CATCCTTCTCAACATTTCCA+TGG | + | chr5_2:52835863-52835882 | None:intergenic | 40.0% | |
| ATGTTGAGAAGGATGAGTCA+TGG | - | chr5_2:52835868-52835887 | Msa0775720:CDS | 40.0% | |
| TGTTGAGAAGGATGAGTCAT+GGG | - | chr5_2:52835869-52835888 | Msa0775720:CDS | 40.0% | |
| TGGTGGTTTAATCCCAACAA+AGG | - | chr5_2:52835967-52835986 | Msa0775720:intron | 40.0% | |
| GGTGGTTTAATCCCAACAAA+GGG | - | chr5_2:52835968-52835987 | Msa0775720:intron | 40.0% | |
| GTGGTTTAATCCCAACAAAG+GGG | - | chr5_2:52835969-52835988 | Msa0775720:intron | 40.0% | |
| CTTCATTGTTCCCCTTTGTT+GGG | + | chr5_2:52835982-52836001 | None:intergenic | 40.0% | |
| ACTTCATTGTTCCCCTTTGT+TGG | + | chr5_2:52835983-52836002 | None:intergenic | 40.0% | |
| AGTAGAAGTCCTGGAAAATC+AGG | - | chr5_2:52836274-52836293 | Msa0775720:intron | 40.0% | |
| GTAGAAGTCCTGGAAAATCA+GGG | - | chr5_2:52836275-52836294 | Msa0775720:intron | 40.0% | |
| ! | CGTCACTTCTTTTCTCTCAT+TGG | + | chr5_2:52836335-52836354 | None:intergenic | 40.0% |
| TGACGGTTTCAACAGTTTGT+TGG | - | chr5_2:52836350-52836369 | Msa0775720:intron | 40.0% | |
| ! | GCAGATTTTTGTCATGTGGT+TGG | - | chr5_2:52836639-52836658 | Msa0775720:CDS | 40.0% |
| ATTTCTGCGTGTAACCATGA+TGG | + | chr5_2:52836684-52836703 | None:intergenic | 40.0% | |
| GTTACACGCAGAAATTACCA+TGG | - | chr5_2:52836689-52836708 | Msa0775720:CDS | 40.0% | |
| CAGGAATGGAGTTATCTAAG+AGG | - | chr5_2:52836840-52836859 | Msa0775720:intron | 40.0% | |
| GAATGGAGTTATCTAAGAGG+TGG | - | chr5_2:52836843-52836862 | Msa0775720:intron | 40.0% | |
| ACAACAGTTGATCGTGACTA+TGG | - | chr5_2:52836870-52836889 | Msa0775720:intron | 40.0% | |
| ! | GCTTCAACAAGGTGATAATG+AGG | + | chr5_2:52836960-52836979 | None:intergenic | 40.0% |
| AGTTCTCTAACCAATGTCTC+AGG | - | chr5_2:52837019-52837038 | Msa0775720:intron | 40.0% | |
| CTGCAATGAGTCAAAAACAC+GGG | + | chr5_2:52837103-52837122 | None:intergenic | 40.0% | |
| !! | GGAAGTGGTGATGATTTTTC+TGG | + | chr5_2:52837168-52837187 | None:intergenic | 40.0% |
| ACTATGGTTGTAGCCACCAT+TGG | + | chr5_2:52835243-52835262 | None:intergenic | 45.0% | |
| !! | TAAATGGTGGAGGAGCACTA+GGG | + | chr5_2:52835274-52835293 | None:intergenic | 45.0% |
| !! | TTAAATGGTGGAGGAGCACT+AGG | + | chr5_2:52835275-52835294 | None:intergenic | 45.0% |
| !! | GTTGGTAGTTGCTGCATTGA+TGG | - | chr5_2:52835379-52835398 | Msa0775720:three_prime_UTR | 45.0% |
| ! | CATTGATGGTAGCTGCAACT+CGG | - | chr5_2:52835393-52835412 | Msa0775720:three_prime_UTR | 45.0% |
| TTTCAGTGGAGTAGAAGTCC+TGG | - | chr5_2:52836265-52836284 | Msa0775720:intron | 45.0% | |
| ! | AAGTGTGACCCTGATTTTCC+AGG | + | chr5_2:52836286-52836305 | None:intergenic | 45.0% |
| GGTGAGAACAAGTCGCTATA+GGG | + | chr5_2:52836313-52836332 | None:intergenic | 45.0% | |
| GTCACATACTTGCACCATCA+TGG | - | chr5_2:52836667-52836686 | Msa0775720:CDS | 45.0% | |
| CAGAAATTACCATGGTACCG+TGG | - | chr5_2:52836697-52836716 | Msa0775720:CDS | 45.0% | |
| ACTCATGTGTACAATTCGGC+AGG | - | chr5_2:52836821-52836840 | Msa0775720:intron | 45.0% | |
| TGTGTACAATTCGGCAGGAA+TGG | - | chr5_2:52836826-52836845 | Msa0775720:intron | 45.0% | |
| CAGTTGATCGTGACTATGGT+TGG | - | chr5_2:52836874-52836893 | Msa0775720:intron | 45.0% | |
| AACCAATGTCTCAGGATCAC+CGG | - | chr5_2:52837027-52837046 | Msa0775720:intron | 45.0% | |
| GATCACTTCGTAAGTGACAC+TGG | - | chr5_2:52837228-52837247 | Msa0775720:intron | 45.0% | |
| !!! | TTGTGCTTCTTTTGGAGCTG+AGG | + | chr5_2:52837279-52837298 | None:intergenic | 45.0% |
| !! | AAAGAATGGGTGTCACTGCT+TGG | - | chr5_2:52837450-52837469 | Msa0775720:CDS | 45.0% |
| !!! | TTTTATAAATATTTTTTTAG+AGG | + | chr5_2:52837341-52837360 | None:intergenic | 5.0% |
| !! | AAAAATATTTATAAAATCTA+CGG | - | chr5_2:52837345-52837364 | Msa0775720:CDS | 5.0% |
| ! | CTGCAACTCGGTTTGATAGC+TGG | - | chr5_2:52835405-52835424 | Msa0775720:intron | 50.0% |
| GGGTGAGAACAAGTCGCTAT+AGG | + | chr5_2:52836314-52836333 | None:intergenic | 50.0% | |
| ATTACCATGGTACCGTGGCA+AGG | - | chr5_2:52836702-52836721 | Msa0775720:intron | 50.0% | |
| TTTACCTTGCCACGGTACCA+TGG | + | chr5_2:52836709-52836728 | None:intergenic | 50.0% | |
| GACCGGTGATCCTGAGACAT+TGG | + | chr5_2:52837032-52837051 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 52835142 | 52837639 | 52835142 | ID=Msa0775720;Name=Msa0775720 |
| chr5_2 | mRNA | 52835142 | 52837639 | 52835142 | ID=Msa0775720-mRNA-1;Parent=Msa0775720;Name=Msa0775720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=25|0.87|0.88|1|0.87|0.77|9|313|358 |
| chr5_2 | exon | 52835142 | 52835415 | 52835142 | ID=Msa0775720-mRNA-1:exon:15805;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52835437 | 52835658 | 52835437 | ID=Msa0775720-mRNA-1:exon:15804;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52835801 | 52835938 | 52835801 | ID=Msa0775720-mRNA-1:exon:15803;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52836058 | 52836138 | 52836058 | ID=Msa0775720-mRNA-1:exon:15802;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52836418 | 52836510 | 52836418 | ID=Msa0775720-mRNA-1:exon:15801;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52836628 | 52836720 | 52836628 | ID=Msa0775720-mRNA-1:exon:15800;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52836885 | 52836951 | 52836885 | ID=Msa0775720-mRNA-1:exon:15799;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52837069 | 52837158 | 52837069 | ID=Msa0775720-mRNA-1:exon:15798;Parent=Msa0775720-mRNA-1 |
| chr5_2 | exon | 52837283 | 52837639 | 52837283 | ID=Msa0775720-mRNA-1:exon:15797;Parent=Msa0775720-mRNA-1 |
| chr5_2 | five_prime_UTR | 52837615 | 52837639 | 52837615 | ID=Msa0775720-mRNA-1:five_prime_utr;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52837283 | 52837614 | 52837283 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52837069 | 52837158 | 52837069 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52836885 | 52836951 | 52836885 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52836628 | 52836720 | 52836628 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52836418 | 52836510 | 52836418 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52836058 | 52836138 | 52836058 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52835801 | 52835938 | 52835801 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | CDS | 52835476 | 52835658 | 52835476 | ID=Msa0775720-mRNA-1:cds;Parent=Msa0775720-mRNA-1 |
| chr5_2 | three_prime_UTR | 52835437 | 52835475 | 52835437 | ID=Msa0775720-mRNA-1:three_prime_utr;Parent=Msa0775720-mRNA-1 |
| chr5_2 | three_prime_UTR | 52835142 | 52835415 | 52835142 | ID=Msa0775720-mRNA-1:three_prime_utr;Parent=Msa0775720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
