Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734300 | XP_003615694.1 | 89.003 | 391 | 10 | 2 | 1 | 358 | 1 | 391 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734300 | sp|P32291|FAD3E_VIGRR | 74.157 | 356 | 61 | 1 | 30 | 354 | 18 | 373 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734300 | G7JZI3 | 89.003 | 391 | 10 | 2 | 1 | 358 | 1 | 391 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008830 | Msa0734300 | 0.804457 | 2.140363e-49 | -8.615850e-47 |
| Msa0734300 | Msa0775720 | 0.836888 | 7.187826e-57 | -8.615850e-47 |
| Msa0734300 | Msa0813100 | 0.858012 | 1.103446e-62 | -8.615850e-47 |
| Msa0734300 | Msa1033560 | 0.829295 | 5.577469e-55 | -8.615850e-47 |
| Msa0734300 | Msa1113850 | 0.803375 | 3.592976e-49 | -8.615850e-47 |
| Msa0734300 | Msa1365200 | 0.815559 | 8.687367e-52 | -8.615850e-47 |
| Msa0734300 | Msa1398860 | 0.801476 | 8.843683e-49 | -8.615850e-47 |
| Msa0734300 | Msa1442220 | -0.804251 | 2.362825e-49 | -8.615850e-47 |
| Msa0275400 | Msa0734300 | -0.812137 | 4.932694e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734300 | MtrunA17_Chr5g0430241 | 89.003 | 391 | 10 | 2 | 1 | 358 | 1 | 391 | 0.0 | 705 |
| Msa0734300 | MtrunA17_Chr7g0242601 | 67.236 | 351 | 84 | 1 | 33 | 352 | 89 | 439 | 0.0 | 511 |
| Msa0734300 | MtrunA17_Chr3g0105171 | 71.389 | 360 | 72 | 1 | 24 | 352 | 17 | 376 | 0.0 | 508 |
| Msa0734300 | MtrunA17_Chr4g0006241 | 68.091 | 351 | 81 | 1 | 33 | 352 | 83 | 433 | 1.11e-172 | 488 |
| Msa0734300 | MtrunA17_Chr1g0175301 | 35.366 | 328 | 163 | 6 | 30 | 310 | 20 | 345 | 7.21e-63 | 205 |
| Msa0734300 | MtrunA17_Chr7g0258651 | 36.890 | 328 | 155 | 9 | 36 | 314 | 25 | 349 | 6.05e-61 | 200 |
| Msa0734300 | MtrunA17_Chr1g0210511 | 37.991 | 229 | 100 | 5 | 123 | 311 | 15 | 241 | 1.42e-38 | 139 |
| Msa0734300 | MtrunA17_Chr4g0074071 | 27.103 | 321 | 183 | 10 | 29 | 312 | 91 | 397 | 8.37e-26 | 107 |
| Msa0734300 | MtrunA17_Chr2g0305881 | 30.579 | 121 | 83 | 1 | 29 | 149 | 89 | 208 | 3.18e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734300 | AT5G05580.1 | 66.667 | 354 | 87 | 1 | 33 | 355 | 80 | 433 | 3.27e-180 | 507 |
| Msa0734300 | AT3G11170.1 | 65.546 | 357 | 92 | 1 | 30 | 355 | 84 | 440 | 7.04e-177 | 499 |
| Msa0734300 | AT2G29980.1 | 66.289 | 353 | 88 | 1 | 32 | 353 | 24 | 376 | 1.27e-170 | 481 |
| Msa0734300 | AT5G05580.2 | 66.555 | 299 | 69 | 1 | 33 | 300 | 80 | 378 | 1.11e-148 | 425 |
| Msa0734300 | AT2G29980.2 | 60.294 | 272 | 73 | 2 | 16 | 252 | 4 | 275 | 1.97e-108 | 319 |
| Msa0734300 | AT3G12120.1 | 35.494 | 324 | 158 | 8 | 36 | 311 | 25 | 345 | 6.51e-61 | 200 |
| Msa0734300 | AT3G12120.2 | 35.494 | 324 | 158 | 8 | 36 | 311 | 25 | 345 | 6.51e-61 | 200 |
| Msa0734300 | AT4G30950.1 | 26.205 | 332 | 194 | 8 | 11 | 309 | 82 | 395 | 2.24e-26 | 109 |
Find 80 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGGCACAATGTTT+TGG | 0.195045 | 5_1:-48063393 | Msa0734300:CDS |
| GTTTGCATATCCAATTTATT+TGG | 0.197044 | 5_1:-48062698 | Msa0734300:intron |
| CTAATATCTGCTATCTTAAA+TGG | 0.243193 | 5_1:+48063556 | None:intergenic |
| TAAGTTCTACGGTTATATTT+TGG | 0.255417 | 5_1:-48061471 | Msa0734300:three_prime_UTR |
| GAGTTGTGGTTCATGTTAAC+TGG | 0.258087 | 5_1:-48061449 | Msa0734300:three_prime_UTR |
| AAATATAACCGTAGAACTTA+TGG | 0.277271 | 5_1:+48061474 | None:intergenic |
| TTCTTCACCCAACAATGTTT+TGG | 0.289522 | 5_1:+48063523 | None:intergenic |
| AAGTATTTAATTAGATGAAA+TGG | 0.351127 | 5_1:+48061641 | None:intergenic |
| TGGTTACAACCATTGTTTCT+TGG | 0.351671 | 5_1:+48063623 | None:intergenic |
| CCTTGAAGAGGCCAATAAAT+TGG | 0.355834 | 5_1:+48063406 | None:intergenic |
| AAGCTTCTCAGATAGTTCTT+TGG | 0.357997 | 5_1:-48063211 | Msa0734300:CDS |
| TTTAGAGGCTAGCATTGAAT+TGG | 0.375162 | 5_1:+48061503 | None:intergenic |
| CCAATTTATTGGCCTCTTCA+AGG | 0.375978 | 5_1:-48063406 | Msa0734300:CDS |
| GGGTGAGAACAAGTCGCTAT+AGG | 0.376935 | 5_1:+48062523 | None:intergenic |
| CTGCTATTCCAAAACATTGT+TGG | 0.377085 | 5_1:-48063531 | Msa0734300:CDS |
| AGTAGAAGTCCTGGAAAATC+AGG | 0.381452 | 5_1:-48062560 | Msa0734300:CDS |
| GAATTGAGGAATGCAAAATA+TGG | 0.383781 | 5_1:+48063172 | None:intergenic |
| ACAACCGTTGATCGTGACTA+TGG | 0.392892 | 5_1:-48061960 | Msa0734300:CDS |
| TGCTATTCCAAAACATTGTT+GGG | 0.400992 | 5_1:-48063530 | Msa0734300:CDS |
| TTCTTTGGTGAATAACTTTG+TGG | 0.401476 | 5_1:-48063196 | Msa0734300:CDS |
| TTCAGATATGTGGTGAATAG+AGG | 0.413103 | 5_1:+48063663 | None:intergenic |
| GGTGAGAACAAGTCGCTATA+GGG | 0.420549 | 5_1:+48062524 | None:intergenic |
| CTTATTCATTGTGCTTCTTG+TGG | 0.443124 | 5_1:+48061543 | None:intergenic |
| CTCTTAATGTAATAATATGT+TGG | 0.443150 | 5_1:-48061294 | Msa0734300:three_prime_UTR |
| CATCCTTCTCAACATTTCCA+TGG | 0.444146 | 5_1:+48062963 | None:intergenic |
| TTCTTGTTCCTTACCATGGA+TGG | 0.462110 | 5_1:-48063152 | Msa0734300:intron |
| TCAATTCTTGTTCCTTACCA+TGG | 0.468411 | 5_1:-48063156 | Msa0734300:CDS |
| ATTATCTTAGTTGACAGAAA+AGG | 0.475863 | 5_1:-48062779 | Msa0734300:intron |
| AAGTGATAATGAGGAATTTG+AGG | 0.477418 | 5_1:+48061882 | None:intergenic |
| CACTAGGGTCAAATTCACTA+TGG | 0.482540 | 5_1:+48063587 | None:intergenic |
| TTAAATGGTGGAGGAGCACT+AGG | 0.483704 | 5_1:+48063571 | None:intergenic |
| CTGCAATTCAGTTTGATAGC+TGG | 0.490230 | 5_1:-48063438 | Msa0734300:CDS |
| TCTTTGGTGAATAACTTTGT+GGG | 0.492978 | 5_1:-48063195 | Msa0734300:CDS |
| GGATATGCAAACAATGGTAA+AGG | 0.503671 | 5_1:+48062709 | None:intergenic |
| AACTATCTGAGAAGCTTCCA+TGG | 0.506224 | 5_1:+48063217 | None:intergenic |
| GCAGATATTTGTAATGTGGT+TGG | 0.508431 | 5_1:-48062187 | Msa0734300:intron |
| AAGTAGCAACTGAATTTACT+AGG | 0.508962 | 5_1:+48061381 | None:intergenic |
| AGTGATAATGAGGAATTTGA+GGG | 0.516886 | 5_1:+48061883 | None:intergenic |
| TTAATTAGATGAAATGGAAG+TGG | 0.519942 | 5_1:+48061647 | None:intergenic |
| TTTCAGTGGAGTAGAAGTCC+TGG | 0.522116 | 5_1:-48062569 | Msa0734300:intron |
| ACTATGGTTGTAGCCACCAT+TGG | 0.526256 | 5_1:+48063603 | None:intergenic |
| AACAACATTCACCATGACAT+TGG | 0.529424 | 5_1:-48061930 | Msa0734300:CDS |
| TTGTGCTTCTTGTGGAGCTG+AGG | 0.530462 | 5_1:+48061551 | None:intergenic |
| GATCACTTTGTTAGTGACAC+TGG | 0.533118 | 5_1:-48061599 | Msa0734300:CDS |
| CAAAACATTGTGCCTTGAAG+AGG | 0.537908 | 5_1:+48063394 | None:intergenic |
| TTCACTAACCATCCATGGTA+AGG | 0.541367 | 5_1:+48063144 | None:intergenic |
| TCAAATTCCTCATTATCACT+TGG | 0.546390 | 5_1:-48061880 | Msa0734300:CDS |
| CCGTTGATCGTGACTATGGT+TGG | 0.546535 | 5_1:-48061956 | Msa0734300:CDS |
| TAGGAATGGAGTTATCTAAG+AGG | 0.552803 | 5_1:-48061990 | Msa0734300:CDS |
| TCATTATCACTTGGTTGAAG+CGG | 0.556548 | 5_1:-48061871 | Msa0734300:intron |
| TCTGCTATCTTAAATGGTGG+AGG | 0.559855 | 5_1:+48063562 | None:intergenic |
| GAAACAATGGTTGTAACCAA+TGG | 0.561552 | 5_1:-48063619 | Msa0734300:CDS |
| AAACTTTCACTAACCATCCA+TGG | 0.562222 | 5_1:+48063139 | None:intergenic |
| TGTTGAGAAGGATGAGTCAT+GGG | 0.562849 | 5_1:-48062954 | Msa0734300:CDS |
| AGTTGTGGTTCATGTTAACT+GGG | 0.572169 | 5_1:-48061448 | Msa0734300:three_prime_UTR |
| GCTTCAACCAAGTGATAATG+AGG | 0.573247 | 5_1:+48061873 | None:intergenic |
| AAACCATGGAAATGTTGAGA+AGG | 0.578515 | 5_1:-48062966 | Msa0734300:CDS |
| ATGTTGAGAAGGATGAGTCA+TGG | 0.582381 | 5_1:-48062955 | Msa0734300:CDS |
| AAGTTATGTTCTTAGAGATG+TGG | 0.583661 | 5_1:-48063485 | Msa0734300:CDS |
| TTTACCTTGCCACGGTACCA+TGG | 0.598110 | 5_1:+48062120 | None:intergenic |
| AAAACACATCATCAAAACCA+TGG | 0.601612 | 5_1:-48062980 | Msa0734300:CDS |
| TAAATTGGATATGCAAACAA+TGG | 0.608374 | 5_1:+48062703 | None:intergenic |
| TTATGTTCTTAGAGATGTGG+TGG | 0.609151 | 5_1:-48063482 | Msa0734300:CDS |
| GAATGGAGTTATCTAAGAGG+TGG | 0.609571 | 5_1:-48061987 | Msa0734300:CDS |
| AACTGCAGATATTTGTAATG+TGG | 0.610353 | 5_1:-48062191 | Msa0734300:intron |
| AACACTAGGCCAAGAAACAA+TGG | 0.614089 | 5_1:-48063632 | Msa0734300:CDS |
| ATATCTGCTATCTTAAATGG+TGG | 0.622664 | 5_1:+48063559 | None:intergenic |
| ACAATGGTTGTAACCAATGG+TGG | 0.624372 | 5_1:-48063616 | Msa0734300:CDS |
| GTCACATACTTGCATCACCA+CGG | 0.626452 | 5_1:-48062159 | Msa0734300:CDS |
| ATTACCATGGTACCGTGGCA+AGG | 0.629596 | 5_1:-48062124 | Msa0734300:intron |
| CCAACCATAGTCACGATCAA+CGG | 0.634145 | 5_1:+48061956 | None:intergenic |
| CAACATGTGTGCCAATGTCA+TGG | 0.639198 | 5_1:+48061919 | None:intergenic |
| TTTGTTTGGAATAGTGGCCA+TGG | 0.643837 | 5_1:-48063234 | Msa0734300:intron |
| ATGGTAAGGAACAAGAATTG+AGG | 0.647599 | 5_1:+48063158 | None:intergenic |
| GTAGAAGTCCTGGAAAATCA+GGG | 0.649940 | 5_1:-48062559 | Msa0734300:CDS |
| ATTGTTGGGTGAAGAACACA+TGG | 0.660332 | 5_1:-48063516 | Msa0734300:CDS |
| GTAATTTCTGCGTGTAACCG+TGG | 0.681596 | 5_1:+48062142 | None:intergenic |
| CAGAAATTACCATGGTACCG+TGG | 0.699527 | 5_1:-48062129 | Msa0734300:CDS |
| TAAATGGTGGAGGAGCACTA+GGG | 0.705178 | 5_1:+48063572 | None:intergenic |
| GTTACACGCAGAAATTACCA+TGG | 0.746557 | 5_1:-48062137 | Msa0734300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATCATTTATAAGA+CGG | + | chr5_1:48062706-48062725 | None:intergenic | 10.0% |
| !!! | TAATTTTTAATTTTGCTTTT+TGG | - | chr5_1:48063595-48063614 | Msa0734300:CDS | 10.0% |
| !! | GTTAAAAATATTTCATCTTA+TGG | - | chr5_1:48061236-48061255 | Msa0734300:three_prime_UTR | 15.0% |
| !!! | TTCATTTTTAAATGCATTTT+TGG | - | chr5_1:48062565-48062584 | Msa0734300:CDS | 15.0% |
| !! | TATAAATGATTATTATATGC+TGG | - | chr5_1:48062709-48062728 | Msa0734300:CDS | 15.0% |
| !! | ATAAATAATTGATTGATTGA+AGG | + | chr5_1:48062855-48062874 | None:intergenic | 15.0% |
| !! | AAGTATTTAATTAGATGAAA+TGG | + | chr5_1:48063293-48063312 | None:intergenic | 15.0% |
| !! | TATGTTAATGTTATGTCATA+TGG | - | chr5_1:48061634-48061653 | Msa0734300:CDS | 20.0% |
| !! | TCAATAAATAAATCACATAC+TGG | + | chr5_1:48062005-48062024 | None:intergenic | 20.0% |
| !!! | TGTTATTATATGCATAGTTT+TGG | - | chr5_1:48062050-48062069 | Msa0734300:intron | 20.0% |
| !! | AAAAAACTCACCAAATAAAT+TGG | + | chr5_1:48062246-48062265 | None:intergenic | 20.0% |
| !! | TAAAGTTTGAGAATTAAAAG+TGG | + | chr5_1:48062518-48062537 | None:intergenic | 20.0% |
| !!! | CTTTTAATTCTCAAACTTTA+TGG | - | chr5_1:48062518-48062537 | Msa0734300:CDS | 20.0% |
| !! | AATTATTTATGTGCGTAATT+AGG | - | chr5_1:48062865-48062884 | Msa0734300:intron | 20.0% |
| !!! | AATGAATAAGTCACTTTTTT+TGG | - | chr5_1:48063401-48063420 | Msa0734300:CDS | 20.0% |
| !!! | AACTTATGGATATTTTTTAG+AGG | + | chr5_1:48063446-48063465 | None:intergenic | 20.0% |
| !! | AAAAATATCCATAAGTTCTA+CGG | - | chr5_1:48063449-48063468 | Msa0734300:CDS | 20.0% |
| !! | TGTCTACATTATAAAAAGAA+CGG | - | chr5_1:48063518-48063537 | Msa0734300:CDS | 20.0% |
| !! | TACTTAGAGACAAAAATATT+TGG | - | chr5_1:48063568-48063587 | Msa0734300:CDS | 20.0% |
| !! | ACTTAGAGACAAAAATATTT+GGG | - | chr5_1:48063569-48063588 | Msa0734300:CDS | 20.0% |
| !! | CTCTTAATGTAATAATATGT+TGG | - | chr5_1:48063637-48063656 | Msa0734300:CDS | 20.0% |
| !!! | TTTCTCTTTTTTCAGATATG+TGG | + | chr5_1:48061281-48061300 | None:intergenic | 25.0% |
| ! | CTAATATCTGCTATCTTAAA+TGG | + | chr5_1:48061378-48061397 | None:intergenic | 25.0% |
| !! | TTTGCTTGAATGAATTTTTC+AGG | - | chr5_1:48061916-48061935 | Msa0734300:CDS | 25.0% |
| !!! | TATTATATGCATAGTTTTGG+TGG | - | chr5_1:48062053-48062072 | Msa0734300:intron | 25.0% |
| ! | ATTATCTTAGTTGACAGAAA+AGG | - | chr5_1:48062152-48062171 | Msa0734300:CDS | 25.0% |
| ! | TAAATTGGATATGCAAACAA+TGG | + | chr5_1:48062231-48062250 | None:intergenic | 25.0% |
| ! | GTTTGCATATCCAATTTATT+TGG | - | chr5_1:48062233-48062252 | Msa0734300:intron | 25.0% |
| ! | GTAAAATGTTAATGTTTCAG+TGG | - | chr5_1:48062348-48062367 | Msa0734300:intron | 25.0% |
| !!! | ATTATATTTTTACCTTGCCA+CGG | + | chr5_1:48062822-48062841 | None:intergenic | 25.0% |
| ! | CTGGTTAAAGAAATAAAAGT+AGG | + | chr5_1:48063106-48063125 | None:intergenic | 25.0% |
| ! | AGTCTGCATGAATTAAAAAA+AGG | + | chr5_1:48063210-48063229 | None:intergenic | 25.0% |
| ! | TTAATTAGATGAAATGGAAG+TGG | + | chr5_1:48063287-48063306 | None:intergenic | 25.0% |
| ! | AAATATAACCGTAGAACTTA+TGG | + | chr5_1:48063460-48063479 | None:intergenic | 25.0% |
| !! | TAAGTTCTACGGTTATATTT+TGG | - | chr5_1:48063460-48063479 | Msa0734300:CDS | 25.0% |
| ! | GTCTACATTATAAAAAGAAC+GGG | - | chr5_1:48063519-48063538 | Msa0734300:CDS | 25.0% |
| TCTGAAAAAAGAGAAACACT+AGG | - | chr5_1:48061285-48061304 | Msa0734300:three_prime_UTR | 30.0% | |
| ATATCTGCTATCTTAAATGG+TGG | + | chr5_1:48061375-48061394 | None:intergenic | 30.0% | |
| TGCTATTCCAAAACATTGTT+GGG | - | chr5_1:48061401-48061420 | Msa0734300:three_prime_UTR | 30.0% | |
| AAGTTATGTTCTTAGAGATG+TGG | - | chr5_1:48061446-48061465 | Msa0734300:three_prime_UTR | 30.0% | |
| !! | AGTTTGATAGCTGGTATTTT+TGG | - | chr5_1:48061502-48061521 | Msa0734300:three_prime_UTR | 30.0% |
| !!! | GGTATTTTTGGCCAATTTAT+TGG | - | chr5_1:48061514-48061533 | Msa0734300:three_prime_UTR | 30.0% |
| ! | TTTTGGGCAATTTTTGTTCT+TGG | - | chr5_1:48061555-48061574 | Msa0734300:CDS | 30.0% |
| ! | TTTTTGTTCTTGGACATGAT+TGG | - | chr5_1:48061565-48061584 | Msa0734300:CDS | 30.0% |
| !!! | TGATGTTTTGTTTGGAATAG+TGG | - | chr5_1:48061691-48061710 | Msa0734300:CDS | 30.0% |
| TTCTTTGGTGAATAACTTTG+TGG | - | chr5_1:48061735-48061754 | Msa0734300:intron | 30.0% | |
| TCTTTGGTGAATAACTTTGT+GGG | - | chr5_1:48061736-48061755 | Msa0734300:intron | 30.0% | |
| GAATTGAGGAATGCAAAATA+TGG | + | chr5_1:48061762-48061781 | None:intergenic | 30.0% | |
| ! | TCAAAGTAAAGTTTTACCCA+TGG | + | chr5_1:48061873-48061892 | None:intergenic | 30.0% |
| AAAACACATCATCAAAACCA+TGG | - | chr5_1:48061951-48061970 | Msa0734300:CDS | 30.0% | |
| GAAAGTAACTTTACCCAATA+GGG | + | chr5_1:48062548-48062567 | None:intergenic | 30.0% | |
| TGAAAGTAACTTTACCCAAT+AGG | + | chr5_1:48062549-48062568 | None:intergenic | 30.0% | |
| CGGTAAATTTGGTAGAATTA+CGG | + | chr5_1:48062671-48062690 | None:intergenic | 30.0% | |
| AACTGCAGATATTTGTAATG+TGG | - | chr5_1:48062740-48062759 | Msa0734300:CDS | 30.0% | |
| GATTACTCATGTGTACAATT+TGG | - | chr5_1:48062918-48062937 | Msa0734300:intron | 30.0% | |
| ! | AGTGATAATGAGGAATTTGA+GGG | + | chr5_1:48063051-48063070 | None:intergenic | 30.0% |
| ! | AAGTGATAATGAGGAATTTG+AGG | + | chr5_1:48063052-48063071 | None:intergenic | 30.0% |
| TCAAATTCCTCATTATCACT+TGG | - | chr5_1:48063051-48063070 | Msa0734300:intron | 30.0% | |
| TATCGAACGTATAAAATGAC+CGG | + | chr5_1:48063142-48063161 | None:intergenic | 30.0% | |
| ! | AAAGCAGCAAAACCAATTTT+TGG | - | chr5_1:48063230-48063249 | Msa0734300:intron | 30.0% |
| AAGTAGCAACTGAATTTACT+AGG | + | chr5_1:48063553-48063572 | None:intergenic | 30.0% | |
| TTCAGATATGTGGTGAATAG+AGG | + | chr5_1:48061271-48061290 | None:intergenic | 35.0% | |
| ! | TGGTTACAACCATTGTTTCT+TGG | + | chr5_1:48061311-48061330 | None:intergenic | 35.0% |
| GAAACAATGGTTGTAACCAA+TGG | - | chr5_1:48061312-48061331 | Msa0734300:three_prime_UTR | 35.0% | |
| CTGCTATTCCAAAACATTGT+TGG | - | chr5_1:48061400-48061419 | Msa0734300:three_prime_UTR | 35.0% | |
| ! | TTCTTCACCCAACAATGTTT+TGG | + | chr5_1:48061411-48061430 | None:intergenic | 35.0% |
| TTATGTTCTTAGAGATGTGG+TGG | - | chr5_1:48061449-48061468 | Msa0734300:three_prime_UTR | 35.0% | |
| ! | TCTTCAAGGCACAATGTTTT+GGG | - | chr5_1:48061539-48061558 | Msa0734300:exon | 35.0% |
| !! | GCGAACATTGATGTTTTGTT+TGG | - | chr5_1:48061683-48061702 | Msa0734300:CDS | 35.0% |
| AAGCTTCTCAGATAGTTCTT+TGG | - | chr5_1:48061720-48061739 | Msa0734300:intron | 35.0% | |
| ATGGTAAGGAACAAGAATTG+AGG | + | chr5_1:48061776-48061795 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCTTACCA+TGG | - | chr5_1:48061775-48061794 | Msa0734300:intron | 35.0% | |
| AAACTTTCACTAACCATCCA+TGG | + | chr5_1:48061795-48061814 | None:intergenic | 35.0% | |
| !! | TTGTCCATGTTTTTGTTCCA+TGG | - | chr5_1:48061853-48061872 | Msa0734300:intron | 35.0% |
| !! | TGTCCATGTTTTTGTTCCAT+GGG | - | chr5_1:48061854-48061873 | Msa0734300:intron | 35.0% |
| TTACCCATGGAACAAAAACA+TGG | + | chr5_1:48061860-48061879 | None:intergenic | 35.0% | |
| AAACCATGGAAATGTTGAGA+AGG | - | chr5_1:48061965-48061984 | Msa0734300:CDS | 35.0% | |
| GGATATGCAAACAATGGTAA+AGG | + | chr5_1:48062225-48062244 | None:intergenic | 35.0% | |
| ! | GTCACTTCTTTTCTCTCATT+GGG | + | chr5_1:48062431-48062450 | None:intergenic | 35.0% |
| !! | TGTCACTTCTTTTCTCTCAT+TGG | + | chr5_1:48062432-48062451 | None:intergenic | 35.0% |
| TGACAGTTTCAACAGTTTGT+TGG | - | chr5_1:48062447-48062466 | Msa0734300:intron | 35.0% | |
| !! | TAAAAGTGGACTAGTTGTGA+AGG | + | chr5_1:48062504-48062523 | None:intergenic | 35.0% |
| AACTTTATGGAGTTCCCTAT+TGG | - | chr5_1:48062531-48062550 | Msa0734300:CDS | 35.0% | |
| ACTTTATGGAGTTCCCTATT+GGG | - | chr5_1:48062532-48062551 | Msa0734300:CDS | 35.0% | |
| TTTGGTAGAATTACGGTGAA+AGG | + | chr5_1:48062664-48062683 | None:intergenic | 35.0% | |
| ! | GTGTCGATAAACGGTAAATT+TGG | + | chr5_1:48062682-48062701 | None:intergenic | 35.0% |
| GCAGATATTTGTAATGTGGT+TGG | - | chr5_1:48062744-48062763 | Msa0734300:CDS | 35.0% | |
| ATCAGACTCAACAAGATTTG+AGG | + | chr5_1:48062901-48062920 | None:intergenic | 35.0% | |
| ACTCATGTGTACAATTTGGT+AGG | - | chr5_1:48062922-48062941 | Msa0734300:intron | 35.0% | |
| TGTGTACAATTTGGTAGGAA+TGG | - | chr5_1:48062927-48062946 | Msa0734300:intron | 35.0% | |
| TAGGAATGGAGTTATCTAAG+AGG | - | chr5_1:48062941-48062960 | Msa0734300:intron | 35.0% | |
| AACAACATTCACCATGACAT+TGG | - | chr5_1:48063001-48063020 | Msa0734300:intron | 35.0% | |
| TCATTATCACTTGGTTGAAG+CGG | - | chr5_1:48063060-48063079 | Msa0734300:intron | 35.0% | |
| GTTGAAGCGGTAATTACTTA+CGG | - | chr5_1:48063073-48063092 | Msa0734300:intron | 35.0% | |
| TTGAAGCGGTAATTACTTAC+GGG | - | chr5_1:48063074-48063093 | Msa0734300:intron | 35.0% | |
| ATTTCTTTAACCAGTGTCTC+AGG | - | chr5_1:48063112-48063131 | Msa0734300:intron | 35.0% | |
| TTTCTTTAACCAGTGTCTCA+GGG | - | chr5_1:48063113-48063132 | Msa0734300:intron | 35.0% | |
| CGGTAATAGTCTCCAAAAAT+TGG | + | chr5_1:48063245-48063264 | None:intergenic | 35.0% | |
| CTTATTCATTGTGCTTCTTG+TGG | + | chr5_1:48063391-48063410 | None:intergenic | 35.0% | |
| ! | TTTAGAGGCTAGCATTGAAT+TGG | + | chr5_1:48063431-48063450 | None:intergenic | 35.0% |
| !!! | ACGGTTATATTTTGGAGTTG+TGG | - | chr5_1:48063468-48063487 | Msa0734300:CDS | 35.0% |
| AGTTGTGGTTCATGTTAACT+GGG | - | chr5_1:48063483-48063502 | Msa0734300:CDS | 35.0% | |
| AACACTAGGCCAAGAAACAA+TGG | - | chr5_1:48061299-48061318 | Msa0734300:three_prime_UTR | 40.0% | |
| ACAATGGTTGTAACCAATGG+TGG | - | chr5_1:48061315-48061334 | Msa0734300:three_prime_UTR | 40.0% | |
| CACTAGGGTCAAATTCACTA+TGG | + | chr5_1:48061347-48061366 | None:intergenic | 40.0% | |
| TCTGCTATCTTAAATGGTGG+AGG | + | chr5_1:48061372-48061391 | None:intergenic | 40.0% | |
| ATTGTTGGGTGAAGAACACA+TGG | - | chr5_1:48061415-48061434 | Msa0734300:three_prime_UTR | 40.0% | |
| ! | CTGCAATTCAGTTTGATAGC+TGG | - | chr5_1:48061493-48061512 | Msa0734300:three_prime_UTR | 40.0% |
| CCTTGAAGAGGCCAATAAAT+TGG | + | chr5_1:48061528-48061547 | None:intergenic | 40.0% | |
| ! | CCAATTTATTGGCCTCTTCA+AGG | - | chr5_1:48061525-48061544 | Msa0734300:exon | 40.0% |
| CAAAACATTGTGCCTTGAAG+AGG | + | chr5_1:48061540-48061559 | None:intergenic | 40.0% | |
| ! | CTCTTCAAGGCACAATGTTT+TGG | - | chr5_1:48061538-48061557 | Msa0734300:exon | 40.0% |
| ! | TTTGTTTGGAATAGTGGCCA+TGG | - | chr5_1:48061697-48061716 | Msa0734300:CDS | 40.0% |
| AACTATCTGAGAAGCTTCCA+TGG | + | chr5_1:48061717-48061736 | None:intergenic | 40.0% | |
| TTCTTGTTCCTTACCATGGA+TGG | - | chr5_1:48061779-48061798 | Msa0734300:intron | 40.0% | |
| TTCACTAACCATCCATGGTA+AGG | + | chr5_1:48061790-48061809 | None:intergenic | 40.0% | |
| CATCCTTCTCAACATTTCCA+TGG | + | chr5_1:48061971-48061990 | None:intergenic | 40.0% | |
| ATGTTGAGAAGGATGAGTCA+TGG | - | chr5_1:48061976-48061995 | Msa0734300:CDS | 40.0% | |
| TGTTGAGAAGGATGAGTCAT+GGG | - | chr5_1:48061977-48061996 | Msa0734300:CDS | 40.0% | |
| CTTCATTGTTCCCCTTTGTT+GGG | + | chr5_1:48062085-48062104 | None:intergenic | 40.0% | |
| ACTTCATTGTTCCCCTTTGT+TGG | + | chr5_1:48062086-48062105 | None:intergenic | 40.0% | |
| AGTAGAAGTCCTGGAAAATC+AGG | - | chr5_1:48062371-48062390 | Msa0734300:intron | 40.0% | |
| GTAGAAGTCCTGGAAAATCA+GGG | - | chr5_1:48062372-48062391 | Msa0734300:intron | 40.0% | |
| ! | TAAGACGGTGTGTCGATAAA+CGG | + | chr5_1:48062691-48062710 | None:intergenic | 40.0% |
| GTTACACGCAGAAATTACCA+TGG | - | chr5_1:48062794-48062813 | Msa0734300:intron | 40.0% | |
| GAATGGAGTTATCTAAGAGG+TGG | - | chr5_1:48062944-48062963 | Msa0734300:intron | 40.0% | |
| ! | GCTTCAACCAAGTGATAATG+AGG | + | chr5_1:48063061-48063080 | None:intergenic | 40.0% |
| !!! | GTGATGATTTTTCTGGCTCA+CGG | + | chr5_1:48063265-48063284 | None:intergenic | 40.0% |
| !! | GGAAGTGGTGATGATTTTTC+TGG | + | chr5_1:48063272-48063291 | None:intergenic | 40.0% |
| GATCACTTTGTTAGTGACAC+TGG | - | chr5_1:48063332-48063351 | Msa0734300:intron | 40.0% | |
| GAGTTGTGGTTCATGTTAAC+TGG | - | chr5_1:48063482-48063501 | Msa0734300:CDS | 40.0% | |
| ACTATGGTTGTAGCCACCAT+TGG | + | chr5_1:48061331-48061350 | None:intergenic | 45.0% | |
| !! | TAAATGGTGGAGGAGCACTA+GGG | + | chr5_1:48061362-48061381 | None:intergenic | 45.0% |
| !! | TTAAATGGTGGAGGAGCACT+AGG | + | chr5_1:48061363-48061382 | None:intergenic | 45.0% |
| TGGTGGTTTAGTCCCAACAA+AGG | - | chr5_1:48062070-48062089 | Msa0734300:intron | 45.0% | |
| GGTGGTTTAGTCCCAACAAA+GGG | - | chr5_1:48062071-48062090 | Msa0734300:intron | 45.0% | |
| GTGGTTTAGTCCCAACAAAG+GGG | - | chr5_1:48062072-48062091 | Msa0734300:intron | 45.0% | |
| TTTCAGTGGAGTAGAAGTCC+TGG | - | chr5_1:48062362-48062381 | Msa0734300:intron | 45.0% | |
| ! | AAGTGTGACCCTGATTTTCC+AGG | + | chr5_1:48062383-48062402 | None:intergenic | 45.0% |
| GGTGAGAACAAGTCGCTATA+GGG | + | chr5_1:48062410-48062429 | None:intergenic | 45.0% | |
| GTCACATACTTGCATCACCA+CGG | - | chr5_1:48062772-48062791 | Msa0734300:CDS | 45.0% | |
| GTAATTTCTGCGTGTAACCG+TGG | + | chr5_1:48062792-48062811 | None:intergenic | 45.0% | |
| CAGAAATTACCATGGTACCG+TGG | - | chr5_1:48062802-48062821 | Msa0734300:intron | 45.0% | |
| ACAACCGTTGATCGTGACTA+TGG | - | chr5_1:48062971-48062990 | Msa0734300:CDS | 45.0% | |
| CCAACCATAGTCACGATCAA+CGG | + | chr5_1:48062978-48062997 | None:intergenic | 45.0% | |
| CAACATGTGTGCCAATGTCA+TGG | + | chr5_1:48063015-48063034 | None:intergenic | 45.0% | |
| GGGTGAGAACAAGTCGCTAT+AGG | + | chr5_1:48062411-48062430 | None:intergenic | 50.0% | |
| ATTACCATGGTACCGTGGCA+AGG | - | chr5_1:48062807-48062826 | Msa0734300:intron | 50.0% | |
| TTTACCTTGCCACGGTACCA+TGG | + | chr5_1:48062814-48062833 | None:intergenic | 50.0% | |
| CCGTTGATCGTGACTATGGT+TGG | - | chr5_1:48062975-48062994 | Msa0734300:CDS | 50.0% | |
| TTGTGCTTCTTGTGGAGCTG+AGG | + | chr5_1:48063383-48063402 | None:intergenic | 50.0% | |
| AACCAGTGTCTCAGGGTCAC+CGG | - | chr5_1:48063120-48063139 | Msa0734300:intron | 55.0% | |
| GACCGGTGACCCTGAGACAC+TGG | + | chr5_1:48063125-48063144 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 48061230 | 48063723 | 48061230 | ID=Msa0734300;Name=Msa0734300 |
| chr5_1 | mRNA | 48061230 | 48063723 | 48061230 | ID=Msa0734300-mRNA-1;Parent=Msa0734300;Name=Msa0734300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=25|0.85|0.87|1|1|1|8|314|358 |
| chr5_1 | exon | 48061230 | 48061726 | 48061230 | ID=Msa0734300-mRNA-1:exon:13775;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48061872 | 48062009 | 48061872 | ID=Msa0734300-mRNA-1:exon:13774;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48062125 | 48062205 | 48062125 | ID=Msa0734300-mRNA-1:exon:13773;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48062493 | 48062585 | 48062493 | ID=Msa0734300-mRNA-1:exon:13772;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48062699 | 48062791 | 48062699 | ID=Msa0734300-mRNA-1:exon:13771;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48062949 | 48063015 | 48062949 | ID=Msa0734300-mRNA-1:exon:13770;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48063153 | 48063242 | 48063153 | ID=Msa0734300-mRNA-1:exon:13769;Parent=Msa0734300-mRNA-1 |
| chr5_1 | exon | 48063367 | 48063723 | 48063367 | ID=Msa0734300-mRNA-1:exon:13768;Parent=Msa0734300-mRNA-1 |
| chr5_1 | five_prime_UTR | 48063699 | 48063723 | 48063699 | ID=Msa0734300-mRNA-1:five_prime_utr;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48063367 | 48063698 | 48063367 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48063153 | 48063242 | 48063153 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48062949 | 48063015 | 48062949 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48062699 | 48062791 | 48062699 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48062493 | 48062585 | 48062493 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48062125 | 48062205 | 48062125 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48061872 | 48062009 | 48061872 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | CDS | 48061544 | 48061726 | 48061544 | ID=Msa0734300-mRNA-1:cds;Parent=Msa0734300-mRNA-1 |
| chr5_1 | three_prime_UTR | 48061230 | 48061543 | 48061230 | ID=Msa0734300-mRNA-1:three_prime_utr;Parent=Msa0734300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
