AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777300 MtrunA17_Chr5g0433101 91.094 640 28 1 1 640 1 611 0.0 1199
Msa0777300 MtrunA17_Chr2g0303991 93.191 514 35 0 127 640 1 514 0.0 1003
Msa0777300 MtrunA17_Chr5g0433161 96.460 113 4 0 1 113 1 113 1.86e-72 232
Msa0777300 MtrunA17_Chr7g0236501 24.090 357 223 8 288 600 153 505 7.57e-22 99.4
Msa0777300 MtrunA17_Chr8g0382891 24.868 378 225 12 262 628 101 430 7.91e-20 93.2
Msa0777300 MtrunA17_Chr1g0147201 24.324 370 257 10 243 604 68 422 4.93e-18 87.0
Msa0777300 MtrunA17_Chr3g0099661 23.099 342 248 8 291 626 426 758 1.38e-17 87.0
Msa0777300 MtrunA17_Chr3g0099661 21.767 464 329 12 180 630 110 552 3.38e-13 73.2
Msa0777300 MtrunA17_Chr3g0089851 23.442 337 246 7 285 614 132 463 1.48e-17 85.9
Msa0777300 MtrunA17_Chr3g0089851 24.254 268 194 6 286 548 204 467 1.83e-15 79.3
Msa0777300 MtrunA17_Chr2g0331911 22.286 350 262 6 287 630 162 507 7.23e-17 84.3
Msa0777300 MtrunA17_Chr0c20g0493831 23.881 335 241 7 288 614 142 470 1.12e-15 80.1
Msa0777300 MtrunA17_Chr4g0069231 23.867 331 238 7 288 610 142 466 1.14e-15 80.1
Msa0777300 MtrunA17_Chr3g0141651 50.000 66 32 1 48 113 49 113 2.10e-15 75.5
Msa0777300 MtrunA17_Chr8g0369641 27.749 191 132 5 288 473 597 786 3.07e-14 76.3
Msa0777300 MtrunA17_Chr3g0136851 21.534 339 246 7 304 632 219 547 1.11e-13 74.7
Msa0777300 MtrunA17_Chr4g0059671 29.319 191 124 5 286 469 139 325 1.55e-13 74.3
Msa0777300 MtrunA17_Chr4g0059671 28.571 161 113 2 288 447 282 441 3.03e-11 66.6
Msa0777300 MtrunA17_Chr5g0395201 28.409 176 121 3 281 455 424 595 2.36e-13 73.6
Msa0777300 MtrunA17_Chr1g0210801 22.364 313 222 8 288 591 213 513 3.37e-13 72.8
Msa0777300 MtrunA17_Chr1g0210801 21.646 328 220 6 288 614 175 466 8.81e-11 65.1
Msa0777300 MtrunA17_Chr3g0118171 29.064 203 136 5 280 476 197 397 4.37e-13 72.0
Msa0777300 MtrunA17_Chr6g0458411 35.246 122 76 2 321 441 271 390 4.97e-13 72.0
Msa0777300 MtrunA17_Chr6g0458411 22.817 355 221 9 296 640 208 519 4.11e-12 69.3
Msa0777300 MtrunA17_Chr2g0297991 22.741 343 242 7 303 634 291 621 2.22e-12 70.5
Msa0777300 MtrunA17_Chr7g0215561 25.000 272 183 9 296 555 284 546 4.17e-12 69.3
Msa0777300 MtrunA17_Chr5g0412071 22.973 370 263 10 275 632 318 677 4.42e-12 69.3
Msa0777300 MtrunA17_Chr7g0214351 24.908 273 182 9 296 555 285 547 7.32e-12 68.6
Msa0777300 MtrunA17_Chr7g0257371 22.830 311 230 7 292 597 474 779 7.53e-12 68.6
Msa0777300 MtrunA17_Chr3g0143851 23.442 337 242 8 288 615 212 541 8.31e-12 68.6
Msa0777300 MtrunA17_Chr5g0434021 24.638 207 147 4 267 470 487 687 8.38e-12 68.6
Msa0777300 MtrunA17_Chr1g0147171 28.105 153 107 2 301 453 339 488 9.72e-12 68.2
Msa0777300 MtrunA17_Chr1g0160881 33.537 164 99 5 296 453 496 655 1.09e-11 68.2
Msa0777300 MtrunA17_Chr3g0143411 26.946 167 119 3 288 453 146 310 1.20e-11 67.8
Msa0777300 MtrunA17_Chr7g0231941 28.641 206 120 6 288 476 227 422 3.10e-11 66.6
Msa0777300 MtrunA17_Chr8g0375231 23.123 333 219 6 301 632 270 566 3.32e-11 66.6
Msa0777300 MtrunA17_Chr7g0218641 30.256 195 130 4 264 454 316 508 5.83e-11 65.5
Msa0777300 MtrunA17_Chr6g0478551 27.749 191 134 3 287 474 339 528 8.17e-11 65.1
Msa0777300 MtrunA17_Chr5g0419551 27.848 158 111 3 284 439 423 579 8.23e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777300 AT2G30780.2 44.595 444 227 5 192 630 22 451 5.74e-133 398
Msa0777300 AT2G30780.1 44.595 444 227 5 192 630 22 451 5.74e-133 398
Msa0777300 AT2G48000.1 43.607 438 227 8 203 632 43 468 1.79e-114 351
Msa0777300 AT5G10860.1 70.175 114 33 1 1 113 1 114 2.53e-51 176
Msa0777300 AT5G48730.1 26.377 345 240 7 288 624 153 491 2.56e-22 101
Msa0777300 AT3G53170.4 25.281 356 252 7 288 635 97 446 1.36e-19 92.4
Msa0777300 AT4G39620.2 28.082 292 185 11 214 494 69 346 1.16e-18 90.1
Msa0777300 AT4G39620.2 25.490 204 145 4 292 489 215 417 3.85e-14 75.9
Msa0777300 AT3G53170.2 24.933 373 259 9 262 626 128 487 1.44e-18 89.7
Msa0777300 AT3G53170.1 24.933 373 259 9 262 626 128 487 1.44e-18 89.7
Msa0777300 AT4G39620.1 29.752 242 149 9 262 494 117 346 1.45e-18 90.1
Msa0777300 AT4G39620.1 25.490 204 145 4 292 489 215 417 3.71e-14 76.3
Msa0777300 AT3G53170.3 25.166 302 207 8 262 552 128 421 4.19e-16 82.0
Msa0777300 AT1G74850.1 30.412 194 124 5 286 472 142 331 4.12e-15 79.7
Msa0777300 AT3G16010.1 21.569 357 268 6 289 638 166 517 5.85e-15 79.0
Msa0777300 AT2G35130.3 26.667 210 147 4 288 494 299 504 2.58e-14 76.6
Msa0777300 AT2G35130.1 26.230 244 163 7 288 520 302 539 2.64e-14 76.6
Msa0777300 AT2G35130.2 26.667 210 147 4 288 494 324 529 3.38e-14 76.3
Msa0777300 AT1G47271.1 39.583 96 57 1 18 113 7 101 3.82e-14 72.0
Msa0777300 AT1G03560.1 27.230 213 147 5 354 562 186 394 4.09e-14 76.3
Msa0777300 AT3G06430.1 27.700 213 144 6 288 495 127 334 5.32e-14 75.5
Msa0777300 AT3G06430.1 28.313 166 118 1 288 452 198 363 3.58e-13 72.8
Msa0777300 AT4G11690.2 26.872 227 149 7 296 512 180 399 4.17e-13 72.8
Msa0777300 AT2G17140.1 23.499 383 265 10 262 630 128 496 4.26e-13 73.2
Msa0777300 AT2G17140.2 23.499 383 265 10 262 630 128 496 4.26e-13 73.2
Msa0777300 AT4G11690.1 26.872 227 149 7 296 512 207 426 5.10e-13 72.4
Msa0777300 AT5G50280.1 29.609 179 121 5 310 484 369 546 8.60e-13 72.0
Msa0777300 AT1G09820.1 24.375 320 221 9 321 629 225 534 1.26e-12 71.2
Msa0777300 AT1G12300.1 25.000 288 188 11 232 509 215 484 4.14e-12 69.7
Msa0777300 AT1G63070.1 24.088 274 157 6 242 472 210 475 6.16e-12 68.9
Msa0777300 AT1G12775.1 26.818 220 144 8 283 494 261 471 6.21e-12 69.3
Msa0777300 AT1G74900.1 29.936 157 108 2 288 443 233 388 6.25e-12 68.6
Msa0777300 AT1G20300.1 22.109 294 201 9 286 571 152 425 1.73e-11 67.4
Msa0777300 AT1G12700.1 29.012 162 113 2 288 448 231 391 2.38e-11 67.4
Msa0777300 AT1G12700.3 29.012 162 113 2 288 448 247 407 2.60e-11 67.0
Msa0777300 AT1G12700.2 29.012 162 113 2 288 448 247 407 2.60e-11 67.0
Msa0777300 AT5G02860.1 19.531 384 253 10 291 630 393 764 4.02e-11 66.6
Msa0777300 AT5G02860.4 19.531 384 253 10 291 630 393 764 4.02e-11 66.6
Msa0777300 AT5G02860.2 19.531 384 253 10 291 630 393 764 4.02e-11 66.6
Msa0777300 AT5G02860.5 19.531 384 253 10 291 630 393 764 4.02e-11 66.6
Msa0777300 AT5G02860.3 19.531 384 253 10 291 630 393 764 4.02e-11 66.6
Msa0777300 AT1G73710.1 27.811 169 120 2 287 454 517 684 4.78e-11 66.6
Msa0777300 AT5G39980.1 23.580 352 204 9 288 591 263 597 5.44e-11 66.2
Msa0777300 AT1G64583.2 28.333 180 123 5 296 470 160 338 5.88e-11 65.9
Msa0777300 AT1G64580.1 29.534 193 124 6 296 480 193 381 5.96e-11 65.9
Msa0777300 AT1G64583.1 28.333 180 123 5 296 470 185 363 6.04e-11 65.9
Msa0777300 AT4G19440.4 30.270 185 124 4 273 453 608 791 6.36e-11 66.2
Msa0777300 AT4G19440.2 30.270 185 124 4 273 453 608 791 6.36e-11 66.2
Msa0777300 AT4G19440.3 30.270 185 124 4 273 453 608 791 6.36e-11 66.2
Msa0777300 AT4G19440.1 30.270 185 124 4 273 453 608 791 6.36e-11 66.2
Msa0777300 AT3G59040.1 25.907 193 136 4 297 486 259 447 6.51e-11 65.9
Msa0777300 AT2G18940.1 22.024 336 245 8 307 634 268 594 6.69e-11 66.2
Msa0777300 AT2G15980.1 22.439 205 151 4 319 518 245 446 7.18e-11 65.5
Msa0777300 AT4G31850.1 20.047 424 312 12 220 632 128 535 9.62e-11 65.9
Msa0777300 AT3G22470.1 24.088 274 180 10 232 494 197 453 9.88e-11 65.5

Find 207 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGGTTTCATATATTT+TGG 0.108973 5_2:+56144375 Msa0777300:CDS
CTCTTCTTTAGGAATGTTTA+TGG 0.119753 5_2:+56148347 Msa0777300:three_prime_UTR
CTTGATGGTATTTGCCTATT+TGG 0.140078 5_2:-56146706 None:intergenic
TCCACTTATAATTATTTAAT+TGG 0.148085 5_2:+56145611 Msa0777300:CDS
TCTTGCTGTTGAGCTATTTA+AGG 0.156876 5_2:+56145346 Msa0777300:CDS
TCAACTTTCAGGTGATTAAT+TGG 0.180104 5_2:+56145219 Msa0777300:intron
ATTTAAGGAGGCAGAATTTA+AGG 0.185625 5_2:+56145361 Msa0777300:CDS
ATAATAATACCTCAAGTAAA+AGG 0.201277 5_2:-56144474 None:intergenic
GGTATTTGTTCGGTGGATTC+TGG 0.206398 5_2:-56144253 None:intergenic
TCGCAATCCTCCTTGCATTT+TGG 0.238709 5_2:-56143603 None:intergenic
CCTCTTTGAAAGGCAAATTT+TGG 0.256443 5_2:-56148224 None:intergenic
CAAAGATAATACTCTTCTTT+AGG 0.256834 5_2:+56148336 Msa0777300:three_prime_UTR
AGAGGATAAAGTCGCAATTT+TGG 0.257986 5_2:+56144321 Msa0777300:CDS
CACCTTTCCTTTACTGACTT+TGG 0.260798 5_2:-56148034 None:intergenic
CTAAAACTGTAGACAAATTC+AGG 0.263730 5_2:-56146440 None:intergenic
TAAACGACATGCCAATTATC+AGG 0.267402 5_2:+56145804 Msa0777300:CDS
GTGTAGCTTCTGATTATGTT+AGG 0.292755 5_2:+56144359 Msa0777300:CDS
TTTGTTTCTCGACATGAAAA+AGG 0.297098 5_2:+56145460 Msa0777300:CDS
CACTTGGATGTGGGGTGATA+TGG 0.305183 5_2:+56145646 Msa0777300:CDS
CTGCAGCTAGCAAATGGTTT+TGG 0.307390 5_2:-56146802 None:intergenic
CAGCACTTACAATGCACTAA+TGG 0.312427 5_2:+56145397 Msa0777300:CDS
AACGATCACCGGCTAGAATA+TGG 0.313359 5_2:-56148057 None:intergenic
CGTTGAATATATTTGATGAT+TGG 0.313827 5_2:+56146481 Msa0777300:three_prime_UTR
GTGCTGATGGTTCTTGGCTT+TGG 0.314888 5_2:+56143804 Msa0777300:CDS
CATATCATAACCCTGATAAT+TGG 0.322842 5_2:-56145815 None:intergenic
ACCTTTCCTTTACTGACTTT+GGG 0.323926 5_2:-56148033 None:intergenic
ATGGAATGTGATAGTGAAAA+TGG 0.329548 5_2:+56146757 Msa0777300:three_prime_UTR
ACTAGGTCTAAGACCTTGTT+TGG 0.330658 5_2:-56144196 None:intergenic
TTCAAAAGTTGAATATAAAC+AGG 0.331137 5_2:-56144430 None:intergenic
GCGACTTTATCCTCTTGATT+TGG 0.334524 5_2:-56144313 None:intergenic
GTAAAGGTGCTGATGGTTCT+TGG 0.335998 5_2:+56143798 Msa0777300:CDS
GCAAAATGTCCTTGAGGAAA+TGG 0.336938 5_2:+56146192 Msa0777300:CDS
CAGAATTCTGAATATTTGAT+TGG 0.347821 5_2:+56144400 Msa0777300:CDS
TGTTTATGATGCTGTCAAAT+TGG 0.347937 5_2:+56143844 Msa0777300:CDS
AATGATTTATCAACAGGATT+AGG 0.348504 5_2:+56148161 Msa0777300:three_prime_UTR
ACCAGACGTTCTGTACTTGC+AGG 0.350513 5_2:+56146097 Msa0777300:CDS
GAACGCACCACTCACCAAAT+AGG 0.358076 5_2:+56146692 Msa0777300:three_prime_UTR
CATAACCACGAATCATTAAC+AGG 0.359090 5_2:-56145724 None:intergenic
TTATGCACACTTGGGTAATC+TGG 0.359557 5_2:+56145742 Msa0777300:CDS
GCCAAATGGACTTCTTCAAC+TGG 0.360392 5_2:+56146562 Msa0777300:three_prime_UTR
TGAAGATTGGAAAATGAGAT+TGG 0.363544 5_2:+56147022 Msa0777300:three_prime_UTR
CTCCCTGCTTCAACCTTCTC+CGG 0.364452 5_2:+56143093 Msa0777300:five_prime_UTR
TAATTATAAGTGGATATATT+AGG 0.366802 5_2:-56145602 None:intergenic
AATGACAATGATTTATCAAC+AGG 0.367089 5_2:+56148155 Msa0777300:three_prime_UTR
ATGTTCTCATTCAATCTTGA+TGG 0.372642 5_2:-56146721 None:intergenic
GGAAAACTGTTTGGAGGAAA+TGG 0.385760 5_2:+56145958 Msa0777300:CDS
TTATGCCGAGGAAAACTGTT+TGG 0.389812 5_2:+56145949 Msa0777300:CDS
GACCAGCTTAGAATGATATA+AGG 0.396323 5_2:-56146137 None:intergenic
GGATAATGTACAAAGCTTAC+TGG 0.397961 5_2:+56146251 Msa0777300:CDS
GCAATTGATTTCTCCTCCCC+TGG 0.398515 5_2:-56143995 None:intergenic
TAATAAAAGCATTCCTTGTA+AGG 0.412666 5_2:+56146632 Msa0777300:three_prime_UTR
AGGATAACTGCGTGAACATT+TGG 0.414975 5_2:-56144041 None:intergenic
GATATATCTCCACTTGGATG+TGG 0.417294 5_2:+56145636 Msa0777300:CDS
GGTTGAAGCAGGGAGGTTGT+AGG 0.428726 5_2:-56143085 None:intergenic
TCAGACATCTTGCAAGGAAA+AGG 0.429987 5_2:+56143776 Msa0777300:CDS
AGGCAAAGCTTTGGACTTGA+AGG 0.433387 5_2:+56148247 Msa0777300:three_prime_UTR
CCCAGTTGAAGAAGTCCATT+TGG 0.433970 5_2:-56146563 None:intergenic
CCTTTACTGACTTTGGGTAG+TGG 0.434297 5_2:-56148027 None:intergenic
ACCAATTAAATAATTATAAG+TGG 0.435009 5_2:-56145612 None:intergenic
TTTAAGGAGGCAGAATTTAA+GGG 0.435939 5_2:+56145362 Msa0777300:CDS
GACGTGGTTTGGTATTTGTT+CGG 0.439274 5_2:-56144263 None:intergenic
ATTTGATGATTGGATTGGAT+TGG 0.446876 5_2:+56146491 Msa0777300:three_prime_UTR
AGCACTTACAATGCACTAAT+GGG 0.449145 5_2:+56145398 Msa0777300:CDS
ACTTACCTGTTAATGATTCG+TGG 0.449598 5_2:+56145719 Msa0777300:CDS
AGCCGGTGATCGTTTATGAT+AGG 0.450149 5_2:+56148066 Msa0777300:three_prime_UTR
TCAAAGAGGAGGCAAAGCTT+TGG 0.451398 5_2:+56148238 Msa0777300:three_prime_UTR
CGAATATCGTTTGAAGAATG+TGG 0.451563 5_2:-56144152 None:intergenic
AATATATTTGATGATTGGAT+TGG 0.451802 5_2:+56146486 Msa0777300:three_prime_UTR
TGTAGCTTCTGATTATGTTA+GGG 0.451827 5_2:+56144360 Msa0777300:CDS
ACTTTATCCTCTTGATTTGG+AGG 0.451985 5_2:-56144310 None:intergenic
GGGGAGGAGAAATCAATTGC+TGG 0.452072 5_2:+56143998 Msa0777300:CDS
ACTTATAATTATTTAATTGG+TGG 0.454534 5_2:+56145614 Msa0777300:CDS
GGTGGATTCTGGATTTGAAA+TGG 0.455261 5_2:-56144242 None:intergenic
ACAAGGTCTAAGACGTGGTT+TGG 0.458972 5_2:-56144274 None:intergenic
CCCTGCAAGTACAGAACGTC+TGG 0.460643 5_2:-56146098 None:intergenic
CATTCTAAGCTGGTCATGTA+TGG 0.463012 5_2:+56146145 Msa0777300:CDS
TTATGATGGAAATGCATCAA+TGG 0.464137 5_2:-56146341 None:intergenic
CTCAGCAATATAAATTATGA+TGG 0.465846 5_2:-56146355 None:intergenic
CTTGGGTAATCTGGAGAAGA+TGG 0.466453 5_2:+56145751 Msa0777300:CDS
TATGATGGAAATGCATCAAT+GGG 0.473788 5_2:-56146340 None:intergenic
ACAAAACAATGTTGGAGCTT+TGG 0.474704 5_2:+56143961 Msa0777300:CDS
TCAAACCGTGAAAAGGCAAC+TGG 0.475093 5_2:-56143701 None:intergenic
CCAAATGGACTTCTTCAACT+GGG 0.477458 5_2:+56146563 Msa0777300:three_prime_UTR
TCCATCTTCTTAGAGTGTGA+TGG 0.481799 5_2:+56146871 Msa0777300:three_prime_UTR
AAAGATATATTCGCTGGTAA+AGG 0.483944 5_2:+56145775 Msa0777300:CDS
AAACCGGAGAAGGTTGAAGC+AGG 0.484255 5_2:-56143096 None:intergenic
GCCATCACACTCTAAGAAGA+TGG 0.486403 5_2:-56146872 None:intergenic
ACTTAATTTACATACAGTAC+TGG 0.490613 5_2:+56148459 Msa0777300:three_prime_UTR
CCAAAATTTGCCTTTCAAAG+AGG 0.493003 5_2:+56148224 Msa0777300:three_prime_UTR
CATTAGTGCATTGTAAGTGC+TGG 0.496635 5_2:-56145396 None:intergenic
CAAGAACTGCAGCTAGCAAA+TGG 0.497033 5_2:-56146808 None:intergenic
AGCTTTGCCTCCTCTTTGAA+AGG 0.497065 5_2:-56148234 None:intergenic
TGCTACACCTGCTCGTATTG+AGG 0.498372 5_2:+56143727 Msa0777300:CDS
GCTTTGGTGGTCGTGAAACC+AGG 0.501681 5_2:+56143977 Msa0777300:CDS
CAAATGGACTTCTTCAACTG+GGG 0.503432 5_2:+56146564 Msa0777300:three_prime_UTR
AAGGCAACTGGCTGCAACAA+GGG 0.505517 5_2:-56143689 None:intergenic
GCTGGAATTATTGCAGAAAG+AGG 0.505878 5_2:+56144016 Msa0777300:CDS
GATTCGTGGTTATGCACACT+TGG 0.507360 5_2:+56145733 Msa0777300:CDS
TGCCGAGGAAAACTGTTTGG+AGG 0.507545 5_2:+56145952 Msa0777300:CDS
AAACAATGTTGGAGCTTTGG+TGG 0.508153 5_2:+56143964 Msa0777300:CDS
GGAGGAGTTCATGCAGGTAA+TGG 0.510135 5_2:+56147043 Msa0777300:three_prime_UTR
GAGGTTGTAGGTGGTGGTCG+CGG 0.510509 5_2:-56143073 None:intergenic
AGCAGGGAGGTTGTAGGTGG+TGG 0.510758 5_2:-56143079 None:intergenic
GAATATCGTTTGAAGAATGT+GGG 0.511834 5_2:-56144151 None:intergenic
ATGGGTGCTTATATGTTCAA+TGG 0.512023 5_2:+56145416 Msa0777300:CDS
ACTCTAGCATACTGAGCAGC+AGG 0.512185 5_2:-56148197 None:intergenic
AGTGGATATATTAGGTGCAA+GGG 0.513961 5_2:-56145594 None:intergenic
TACCTACATATTATTTGAGA+TGG 0.516488 5_2:-56146590 None:intergenic
GAGTTGTGGTCAGAGATCCT+TGG 0.518472 5_2:+56146273 Msa0777300:CDS
GATGGAAAAGATATATTCGC+TGG 0.518484 5_2:+56145769 Msa0777300:CDS
GGATTTGAAATGGATGTTGA+AGG 0.518696 5_2:-56144232 None:intergenic
TTGGGTAGTGGAATTATCCA+TGG 0.518936 5_2:-56148015 None:intergenic
CTCCTTATATCATTCTAAGC+TGG 0.521166 5_2:+56146135 Msa0777300:CDS
ACAGAACATGTTTATAGATA+CGG 0.521432 5_2:-56146398 None:intergenic
TAATAATACCTCAAGTAAAA+GGG 0.524445 5_2:-56144473 None:intergenic
TTCAGGTGATTAATTGGAGA+AGG 0.524903 5_2:+56145225 Msa0777300:intron
ATATATCTCCACTTGGATGT+GGG 0.525177 5_2:+56145637 Msa0777300:CDS
AGCAGACTCAAACCGTGAAA+AGG 0.527310 5_2:-56143708 None:intergenic
TCACATGGAAGCAACATTCA+AGG 0.532551 5_2:+56145556 Msa0777300:CDS
GGAAAAGACAACTGGCTGTA+CGG 0.532686 5_2:+56146991 Msa0777300:three_prime_UTR
GAAGAATGTGGGATTCGAAA+GGG 0.533111 5_2:-56144140 None:intergenic
ACTGCAAATTCACCCTTACA+AGG 0.533336 5_2:-56146645 None:intergenic
CCACTACCCAAAGTCAGTAA+AGG 0.535147 5_2:+56148027 Msa0777300:three_prime_UTR
TCAAAGGGCATTAAAGCTGC+AGG 0.537663 5_2:+56145305 Msa0777300:CDS
ATGTCCTTGAGGAAATGGAT+AGG 0.538946 5_2:+56146197 Msa0777300:CDS
CTTGATGCTCACTGATCACA+TGG 0.540039 5_2:+56145541 Msa0777300:CDS
AAATTTGCCTTTCAAAGAGG+AGG 0.540297 5_2:+56148227 Msa0777300:three_prime_UTR
TTGGATTGGATTGCATTCAA+AGG 0.540457 5_2:+56146505 Msa0777300:three_prime_UTR
AAGAATGTGGAAAAGACAAC+TGG 0.541264 5_2:+56146983 Msa0777300:three_prime_UTR
AGCTGCAGTTCTTGAGATGT+CGG 0.544851 5_2:+56146817 Msa0777300:three_prime_UTR
GTGGTTTGGTATTTGTTCGG+TGG 0.549858 5_2:-56144260 None:intergenic
TGAAGCAGGGAGGTTGTAGG+TGG 0.553489 5_2:-56143082 None:intergenic
CAGATGACACAAAACAATGT+TGG 0.553982 5_2:+56143953 Msa0777300:intron
CATCATAATTTATATTGCTG+AGG 0.554019 5_2:+56146356 Msa0777300:exon
AAGGTTTGAGAAATGAAACT+AGG 0.554501 5_2:-56144213 None:intergenic
AAGTGGATATATTAGGTGCA+AGG 0.555542 5_2:-56145595 None:intergenic
TACAAAGCTTACTGGAGTTG+TGG 0.556468 5_2:+56146259 Msa0777300:CDS
TGTCCTTGAGGAAATGGATA+GGG 0.556871 5_2:+56146198 Msa0777300:CDS
TTGGGACAAATGTTCAAGCA+TGG 0.557885 5_2:+56146307 Msa0777300:CDS
GCATGCACATGAGTATTCAA+AGG 0.559247 5_2:+56145289 Msa0777300:CDS
CATGCACATGAGTATTCAAA+GGG 0.559981 5_2:+56145290 Msa0777300:CDS
ATCAACAACACATTTAACCA+TGG 0.560049 5_2:-56145920 None:intergenic
GAAAAGACAACTGGCTGTAC+GGG 0.562405 5_2:+56146992 Msa0777300:three_prime_UTR
ATCCTATCATAAACGATCAC+CGG 0.563205 5_2:-56148068 None:intergenic
TAACGACCATGGGTATTATG+AGG 0.563678 5_2:+56146020 Msa0777300:CDS
AATGGATAATGCAATAAATG+AGG 0.564725 5_2:+56145976 Msa0777300:CDS
TGTTTCATTGTTGATGGTGA+AGG 0.566920 5_2:-56144061 None:intergenic
TGAATACTCATGTGCATGCA+TGG 0.567224 5_2:-56145285 None:intergenic
TGAAGAATGTGGGATTCGAA+AGG 0.568480 5_2:-56144141 None:intergenic
ATCTTGCAAGGAAAAGGTAA+AGG 0.570122 5_2:+56143782 Msa0777300:CDS
TTGCAAGATGTCTGAAATTG+TGG 0.570234 5_2:-56143768 None:intergenic
GCAACAGAAGGATAGCAAGT+TGG 0.570562 5_2:-56145485 None:intergenic
GTATTTGCCTATTTGGTGAG+TGG 0.571782 5_2:-56146699 None:intergenic
CCATGCTCCTCAATACGAGC+AGG 0.573052 5_2:-56143734 None:intergenic
GAGATAGATACTTGAAACCA+TGG 0.574353 5_2:+56147998 Msa0777300:three_prime_UTR
TACCATCTCAAATAATATGT+AGG 0.578630 5_2:+56146588 Msa0777300:three_prime_UTR
CCAGACGTTCTGTACTTGCA+GGG 0.579635 5_2:+56146098 Msa0777300:CDS
GAGATTGGAGGAGTTCATGC+AGG 0.579734 5_2:+56147037 Msa0777300:three_prime_UTR
AAATAAAATGAATAAAGTAA+AGG 0.580387 5_2:+56145862 Msa0777300:CDS
TGGGACAAATGTTCAAGCAT+GGG 0.582380 5_2:+56146308 Msa0777300:CDS
GGAAAAGGTAAAGGTGCTGA+TGG 0.584293 5_2:+56143791 Msa0777300:CDS
AATAAAAGCATTCCTTGTAA+GGG 0.587576 5_2:+56146633 Msa0777300:three_prime_UTR
ACAATTTCAGACATCTTGCA+AGG 0.588745 5_2:+56143770 Msa0777300:CDS
GTTCAAACCTCCAAATCAAG+AGG 0.589014 5_2:+56144303 Msa0777300:CDS
AAAGGCAACTGGCTGCAACA+AGG 0.589130 5_2:-56143690 None:intergenic
GAACATGACCTCTGTTGTGA+TGG 0.592961 5_2:+56146738 Msa0777300:three_prime_UTR
GAAAGGTGCCATATTCTAGC+CGG 0.594557 5_2:+56148049 Msa0777300:three_prime_UTR
GGTATGCATCAATTTGCTGC+TGG 0.600780 5_2:+56146609 Msa0777300:three_prime_UTR
TGCTGTTGAGCTATTTAAGG+AGG 0.601828 5_2:+56145349 Msa0777300:CDS
TGACCCTATCCATTTCCTCA+AGG 0.605293 5_2:-56146201 None:intergenic
AGAACCGTTGTAACGACCAT+GGG 0.607083 5_2:+56146010 Msa0777300:CDS
AGATTGGAAAATGAGATTGG+AGG 0.607467 5_2:+56147025 Msa0777300:three_prime_UTR
ACCCAAAGTCAGTAAAGGAA+AGG 0.610531 5_2:+56148032 Msa0777300:three_prime_UTR
AAACGACATGCCAATTATCA+GGG 0.611162 5_2:+56145805 Msa0777300:CDS
TATTAGACAGCCAAAATGCA+AGG 0.612518 5_2:+56143593 Msa0777300:intron
GTTGATTAAGCTTTATGCCG+AGG 0.612748 5_2:+56145937 Msa0777300:CDS
TTGGTGGATATATCTCCACT+TGG 0.613423 5_2:+56145630 Msa0777300:CDS
CAGAACCGTTGTAACGACCA+TGG 0.617197 5_2:+56146009 Msa0777300:CDS
TATATCTCCACTTGGATGTG+GGG 0.624895 5_2:+56145638 Msa0777300:CDS
CCTGCTCGTATTGAGGAGCA+TGG 0.625826 5_2:+56143734 Msa0777300:CDS
CTTTGGTGGTCGTGAAACCA+GGG 0.626408 5_2:+56143978 Msa0777300:CDS
ATCATAAACAGTGTCATCTG+TGG 0.626836 5_2:-56143831 None:intergenic
GAGGTTTGAACAATGAAACA+AGG 0.626928 5_2:-56144291 None:intergenic
ATTCGTGGTTATGCACACTT+GGG 0.626992 5_2:+56145734 Msa0777300:CDS
AAGTTTGTCTGAAAAGAATG+TGG 0.627730 5_2:+56146970 Msa0777300:three_prime_UTR
GTGGATATATTAGGTGCAAG+GGG 0.635069 5_2:-56145593 None:intergenic
AATACCTCAAGTAAAAGGGA+AGG 0.635615 5_2:-56144469 None:intergenic
TTGAATGATGTCTCTAGCAG+CGG 0.637321 5_2:-56146916 None:intergenic
AATACCCATGGTCGTTACAA+CGG 0.638329 5_2:-56146014 None:intergenic
AGAAATGCAAAATGTCCTTG+AGG 0.641202 5_2:+56146186 Msa0777300:CDS
AACCGGAGAAGGTTGAAGCA+GGG 0.643778 5_2:-56143095 None:intergenic
TATGCACCTCATAATACCCA+TGG 0.645336 5_2:-56146026 None:intergenic
ATATTGTACGTAGCAACAGA+AGG 0.649612 5_2:-56145497 None:intergenic
CATATCACCCCACATCCAAG+TGG 0.651761 5_2:-56145645 None:intergenic
AATTTGACATCATTAAGCTG+AGG 0.670559 5_2:-56148486 None:intergenic
CGGAGAAGGTTGAAGCAGGG+AGG 0.684816 5_2:-56143092 None:intergenic
GACGTTCTGTACTTGCAGGG+TGG 0.688128 5_2:+56146101 Msa0777300:CDS
ATCACATTCCATCACAACAG+AGG 0.691952 5_2:-56146746 None:intergenic
TACGCCGCAAAATCCAAACA+AGG 0.695358 5_2:+56144183 Msa0777300:CDS
GGTGGTCGTGAAACCAGGGG+AGG 0.700076 5_2:+56143982 Msa0777300:CDS
TCAAAAGTTGAATATAAACA+GGG 0.701448 5_2:-56144429 None:intergenic
TTTGGTGGTCGTGAAACCAG+GGG 0.703902 5_2:+56143979 Msa0777300:CDS
TAGACAGCCAAAATGCAAGG+AGG 0.707266 5_2:+56143596 Msa0777300:intron
ATGAAACAAGGTCTAAGACG+TGG 0.712810 5_2:-56144279 None:intergenic
GAATGTGATAGTGAAAATGG+AGG 0.713446 5_2:+56146760 Msa0777300:three_prime_UTR
GCAACAAGGGATTCACCATG+CGG 0.719382 5_2:-56143676 None:intergenic
ATCGCACCAAGAAAACACTG+TGG 0.851223 5_2:+56146230 Msa0777300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATGAATAAAGTAA+AGG + chr5_2:56145862-56145881 Msa0777300:CDS 10.0%
!! AATTCAAAAAAATTCAATAA+AGG - chr5_2:56147130-56147149 None:intergenic 10.0%
!!! TAGTGTTATTTTATATCAAT+TGG + chr5_2:56143380-56143399 Msa0777300:intron 15.0%
!!! AGTGTTATTTTATATCAATT+GGG + chr5_2:56143381-56143400 Msa0777300:intron 15.0%
!!! TAAAGTTATTTTATATGCAT+TGG + chr5_2:56143484-56143503 Msa0777300:intron 15.0%
!!! AATATTGTTATATCTGTTTT+TGG + chr5_2:56145515-56145534 Msa0777300:CDS 15.0%
!! TAATTATAAGTGGATATATT+AGG - chr5_2:56145605-56145624 None:intergenic 15.0%
!! TCCACTTATAATTATTTAAT+TGG + chr5_2:56145611-56145630 Msa0777300:CDS 15.0%
!! ACCAATTAAATAATTATAAG+TGG - chr5_2:56145615-56145634 None:intergenic 15.0%
!! ACTTATAATTATTTAATTGG+TGG + chr5_2:56145614-56145633 Msa0777300:CDS 15.0%
!!! TCATTTATTTGATTTGTTGT+TGG + chr5_2:56143300-56143319 Msa0777300:intron 20.0%
!!! TATTTTATATCAATTGGGTA+AGG + chr5_2:56143386-56143405 Msa0777300:intron 20.0%
!!! ATTTTATATCAATTGGGTAA+GGG + chr5_2:56143387-56143406 Msa0777300:intron 20.0%
!! TCAAAAGTTGAATATAAACA+GGG - chr5_2:56144432-56144451 None:intergenic 20.0%
!! TTCAAAAGTTGAATATAAAC+AGG - chr5_2:56144433-56144452 None:intergenic 20.0%
!! TAATAATACCTCAAGTAAAA+GGG - chr5_2:56144476-56144495 None:intergenic 20.0%
!! ATAATAATACCTCAAGTAAA+AGG - chr5_2:56144477-56144496 None:intergenic 20.0%
!! TGTATTGCAATGTATAATAA+TGG - chr5_2:56144558-56144577 None:intergenic 20.0%
!! TATTATACATTGCAATACAT+AGG + chr5_2:56144559-56144578 Msa0777300:intron 20.0%
!! CTAAAATAAGTTAATCAAAC+AGG - chr5_2:56144585-56144604 None:intergenic 20.0%
!!! TTAACTTATTTTAGACTGTT+TGG + chr5_2:56144591-56144610 Msa0777300:intron 20.0%
!!! ATTTTGTTATTGAAACCATA+AGG + chr5_2:56144719-56144738 Msa0777300:intron 20.0%
!!! TTTTGTTATTGAAACCATAA+GGG + chr5_2:56144720-56144739 Msa0777300:intron 20.0%
!! TAAAACCCAATTTGAATAAA+TGG - chr5_2:56144787-56144806 None:intergenic 20.0%
!!! AAATTGGGTTTTAATACTAA+GGG + chr5_2:56144794-56144813 Msa0777300:intron 20.0%
!!! CAATTCAACTTTATTTTATC+AGG + chr5_2:56144981-56145000 Msa0777300:intron 20.0%
!! TTTATGTAAGTGTATACATA+AGG + chr5_2:56145018-56145037 Msa0777300:intron 20.0%
!! TTATGTAAGTGTATACATAA+GGG + chr5_2:56145019-56145038 Msa0777300:intron 20.0%
!! TGTTAAAAAAATCAACTTTC+AGG + chr5_2:56145208-56145227 Msa0777300:intron 20.0%
!!! AATATATTTGATGATTGGAT+TGG + chr5_2:56146486-56146505 Msa0777300:three_prime_UTR 20.0%
!! TGTATGAAAACATTATATCA+AGG - chr5_2:56147271-56147290 None:intergenic 20.0%
!! TATATCAGAAACATTATCAA+AGG - chr5_2:56147336-56147355 None:intergenic 20.0%
!! CTGAATTCAGATTAATATAA+AGG + chr5_2:56147375-56147394 Msa0777300:intron 20.0%
!!! TTGCAATTTTTTTATACTGT+CGG + chr5_2:56147673-56147692 Msa0777300:intron 20.0%
!! TCCAAAATATCATTCTTAAT+AGG - chr5_2:56147769-56147788 None:intergenic 20.0%
!! ACTTGTTTAACAAACAAATT+TGG - chr5_2:56147818-56147837 None:intergenic 20.0%
! GAATCAAAGAATAGAAAAAC+CGG - chr5_2:56143115-56143134 None:intergenic 25.0%
! TCAAGAAATCAAATAAGAAG+AGG - chr5_2:56143193-56143212 None:intergenic 25.0%
!!! TGATTTTGATTTCGAGATTT+TGG + chr5_2:56143210-56143229 Msa0777300:intron 25.0%
! TAAATTCACATTATAGACTC+TGG + chr5_2:56143270-56143289 Msa0777300:intron 25.0%
! AAGAACATTTATCAAACAGT+TGG - chr5_2:56143333-56143352 None:intergenic 25.0%
!!! AAATTGGTAATGCATTTTGT+TGG + chr5_2:56143860-56143879 Msa0777300:intron 25.0%
! CAAAAATGTTTCATTGTTGA+TGG - chr5_2:56144070-56144089 None:intergenic 25.0%
!! CATCAACAATGAAACATTTT+TGG + chr5_2:56144068-56144087 Msa0777300:CDS 25.0%
!! TGTTAGGGTTTCATATATTT+TGG + chr5_2:56144375-56144394 Msa0777300:CDS 25.0%
! CAGAATTCTGAATATTTGAT+TGG + chr5_2:56144400-56144419 Msa0777300:CDS 25.0%
!!! TTATTTTAGACTGTTTGGAT+TGG + chr5_2:56144596-56144615 Msa0777300:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG + chr5_2:56144637-56144656 Msa0777300:intron 25.0%
!!! ACTGTTTTAATAAGCTAACT+TGG - chr5_2:56144667-56144686 None:intergenic 25.0%
! AATAGGCCATTTATTCAAAT+TGG + chr5_2:56144778-56144797 Msa0777300:intron 25.0%
! ATAGGCCATTTATTCAAATT+GGG + chr5_2:56144779-56144798 Msa0777300:intron 25.0%
!!! CAAATTGGGTTTTAATACTA+AGG + chr5_2:56144793-56144812 Msa0777300:intron 25.0%
! GAATTTAAACAAATCGCTAT+CGG - chr5_2:56145115-56145134 None:intergenic 25.0%
!! ATAGCGATTTGTTTAAATTC+TGG + chr5_2:56145115-56145134 Msa0777300:intron 25.0%
! GTTGTTAAATAGAAGCTATA+GGG - chr5_2:56145149-56145168 None:intergenic 25.0%
! TGTTGTTAAATAGAAGCTAT+AGG - chr5_2:56145150-56145169 None:intergenic 25.0%
!!! GTTTTTCAAGTGTTAAATTC+AGG + chr5_2:56145674-56145693 Msa0777300:CDS 25.0%
!! AACAGGTAAGTTTTCATATT+AGG - chr5_2:56145710-56145729 None:intergenic 25.0%
! AATGGATAATGCAATAAATG+AGG + chr5_2:56145976-56145995 Msa0777300:CDS 25.0%
!!! GCATAATTACAGCTTATTTT+CGG + chr5_2:56146044-56146063 Msa0777300:CDS 25.0%
!!! ATCCTTGGTTTTGAAAATAT+TGG + chr5_2:56146288-56146307 Msa0777300:CDS 25.0%
!!! TCCTTGGTTTTGAAAATATT+GGG + chr5_2:56146289-56146308 Msa0777300:CDS 25.0%
! CTCAGCAATATAAATTATGA+TGG - chr5_2:56146358-56146377 None:intergenic 25.0%
! CATCATAATTTATATTGCTG+AGG + chr5_2:56146356-56146375 Msa0777300:exon 25.0%
! ACAGAACATGTTTATAGATA+CGG - chr5_2:56146401-56146420 None:intergenic 25.0%
!! CGTTGAATATATTTGATGAT+TGG + chr5_2:56146481-56146500 Msa0777300:three_prime_UTR 25.0%
!! TAGATATTTTTCTTGCCAAA+TGG + chr5_2:56146548-56146567 Msa0777300:three_prime_UTR 25.0%
! TACCATCTCAAATAATATGT+AGG + chr5_2:56146588-56146607 Msa0777300:three_prime_UTR 25.0%
! TACCTACATATTATTTGAGA+TGG - chr5_2:56146593-56146612 None:intergenic 25.0%
!!! TAATAAAAGCATTCCTTGTA+AGG + chr5_2:56146632-56146651 Msa0777300:three_prime_UTR 25.0%
!!! AATAAAAGCATTCCTTGTAA+GGG + chr5_2:56146633-56146652 Msa0777300:three_prime_UTR 25.0%
!!! ACATCATTCAATTTTGATTG+AGG + chr5_2:56146928-56146947 Msa0777300:three_prime_UTR 25.0%
! ACACAAACAAACATTTGTAT+GGG - chr5_2:56147435-56147454 None:intergenic 25.0%
!! GTTTAATTTAACGAAAGATG+AGG - chr5_2:56147574-56147593 None:intergenic 25.0%
!! GCCTATTAAGAATGATATTT+TGG + chr5_2:56147765-56147784 Msa0777300:intron 25.0%
!! ATTTGTTTGTTAAACAAGTC+AGG + chr5_2:56147819-56147838 Msa0777300:intron 25.0%
! GATGAACAAGAAACTTAATA+TGG - chr5_2:56147940-56147959 None:intergenic 25.0%
! AATGACAATGATTTATCAAC+AGG + chr5_2:56148155-56148174 Msa0777300:three_prime_UTR 25.0%
! AATGATTTATCAACAGGATT+AGG + chr5_2:56148161-56148180 Msa0777300:three_prime_UTR 25.0%
! GAAGAAGAAAAAATGTAGTA+TGG - chr5_2:56148306-56148325 None:intergenic 25.0%
!!! TTTTTTCTTCTTCAAGTATC+AGG + chr5_2:56148313-56148332 Msa0777300:three_prime_UTR 25.0%
! CAAAGATAATACTCTTCTTT+AGG + chr5_2:56148336-56148355 Msa0777300:three_prime_UTR 25.0%
! ACTTAATTTACATACAGTAC+TGG + chr5_2:56148459-56148478 Msa0777300:three_prime_UTR 25.0%
!!! TGCTGTTTTTATTATTTGTC+TGG - chr5_2:56148522-56148541 None:intergenic 25.0%
AAGAGGAATTTACTCACTAA+TGG - chr5_2:56143170-56143189 None:intergenic 30.0%
AATCAAATAAGAAGAGGAAG+AGG - chr5_2:56143187-56143206 None:intergenic 30.0%
TACAATGTGTTAGTCATGTT+TGG + chr5_2:56143461-56143480 Msa0777300:intron 30.0%
GCACATATTCATGTAAGAAA+AGG - chr5_2:56143529-56143548 None:intergenic 30.0%
!! TTGCGATCATTTTTGTCAAA+CGG + chr5_2:56143620-56143639 Msa0777300:CDS 30.0%
TGTTTATGATGCTGTCAAAT+TGG + chr5_2:56143844-56143863 Msa0777300:CDS 30.0%
GAATATCGTTTGAAGAATGT+GGG - chr5_2:56144154-56144173 None:intergenic 30.0%
AAGGTTTGAGAAATGAAACT+AGG - chr5_2:56144216-56144235 None:intergenic 30.0%
TGTAGCTTCTGATTATGTTA+GGG + chr5_2:56144360-56144379 Msa0777300:CDS 30.0%
TATGCTATAAGCTGCAAAAT+AGG + chr5_2:56144761-56144780 Msa0777300:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr5_2:56144865-56144884 Msa0777300:intron 30.0%
!! GCTATTTTCACAAGTTATCT+TGG - chr5_2:56144943-56144962 None:intergenic 30.0%
! TCAACTTTCAGGTGATTAAT+TGG + chr5_2:56145219-56145238 Msa0777300:intron 30.0%
ATTTAAGGAGGCAGAATTTA+AGG + chr5_2:56145361-56145380 Msa0777300:CDS 30.0%
TTTAAGGAGGCAGAATTTAA+GGG + chr5_2:56145362-56145381 Msa0777300:CDS 30.0%
! TTTGTTTCTCGACATGAAAA+AGG + chr5_2:56145460-56145479 Msa0777300:CDS 30.0%
! TTTTCATATTAGGCTCAACA+GGG - chr5_2:56145700-56145719 None:intergenic 30.0%
AAAGATATATTCGCTGGTAA+AGG + chr5_2:56145775-56145794 Msa0777300:CDS 30.0%
CATATCATAACCCTGATAAT+TGG - chr5_2:56145818-56145837 None:intergenic 30.0%
! TGCATCAGAACTTTTACAAT+AGG - chr5_2:56145843-56145862 None:intergenic 30.0%
!! ATGGCTTGTATTCTTTTTCA+GGG - chr5_2:56145904-56145923 None:intergenic 30.0%
ATCAACAACACATTTAACCA+TGG - chr5_2:56145923-56145942 None:intergenic 30.0%
! TCCCAATATTTTCAAAACCA+AGG - chr5_2:56146293-56146312 None:intergenic 30.0%
! TATGATGGAAATGCATCAAT+GGG - chr5_2:56146343-56146362 None:intergenic 30.0%
! TTATGATGGAAATGCATCAA+TGG - chr5_2:56146344-56146363 None:intergenic 30.0%
CTAAAACTGTAGACAAATTC+AGG - chr5_2:56146443-56146462 None:intergenic 30.0%
! CTGAATTTGTCTACAGTTTT+AGG + chr5_2:56146441-56146460 Msa0777300:three_prime_UTR 30.0%
!!! GTCTACAGTTTTAGGAAAAA+TGG + chr5_2:56146449-56146468 Msa0777300:three_prime_UTR 30.0%
! ATTTGATGATTGGATTGGAT+TGG + chr5_2:56146491-56146510 Msa0777300:three_prime_UTR 30.0%
ATGTTCTCATTCAATCTTGA+TGG - chr5_2:56146724-56146743 None:intergenic 30.0%
! ATGGAATGTGATAGTGAAAA+TGG + chr5_2:56146757-56146776 Msa0777300:three_prime_UTR 30.0%
!!! TTCAATTTTGATTGAGGTGA+TGG + chr5_2:56146934-56146953 Msa0777300:three_prime_UTR 30.0%
AAGTTTGTCTGAAAAGAATG+TGG + chr5_2:56146970-56146989 Msa0777300:three_prime_UTR 30.0%
TGAAGATTGGAAAATGAGAT+TGG + chr5_2:56147022-56147041 Msa0777300:three_prime_UTR 30.0%
!!! TGAGATTGTTTTTAGTGTCA+AGG + chr5_2:56147092-56147111 Msa0777300:three_prime_UTR 30.0%
! ATTCAATAAAGGCATACCTA+CGG - chr5_2:56147119-56147138 None:intergenic 30.0%
! CTTTTGTTGACAAATCAGTT+TGG + chr5_2:56147298-56147317 Msa0777300:intron 30.0%
! GTTTCTGATATAATTTGTCC+TGG + chr5_2:56147344-56147363 Msa0777300:intron 30.0%
CACACAAACAAACATTTGTA+TGG - chr5_2:56147436-56147455 None:intergenic 30.0%
! TTGTTTGTGTGTGTGTATTT+TGG + chr5_2:56147445-56147464 Msa0777300:intron 30.0%
!!! GTCTATGACGTTTTTGTTTT+GGG - chr5_2:56147536-56147555 None:intergenic 30.0%
ATATAGCATATGAGACCAAA+GGG - chr5_2:56147606-56147625 None:intergenic 30.0%
TAAACAAGTCAGGATTAATG+TGG + chr5_2:56147829-56147848 Msa0777300:intron 30.0%
GGGGACATTGAAAAATTTAT+GGG - chr5_2:56147860-56147879 None:intergenic 30.0%
AGGGGACATTGAAAAATTTA+TGG - chr5_2:56147861-56147880 None:intergenic 30.0%
TAAAGGAGAGAATAAGATAG+GGG - chr5_2:56147879-56147898 None:intergenic 30.0%
GTAAAGGAGAGAATAAGATA+GGG - chr5_2:56147880-56147899 None:intergenic 30.0%
AGTAAAGGAGAGAATAAGAT+AGG - chr5_2:56147881-56147900 None:intergenic 30.0%
!!! ATCTTTTTTGAAGTGTAACC+TGG + chr5_2:56147957-56147976 Msa0777300:intron 30.0%
CAAAAAAATGAATCCTTCTC+CGG + chr5_2:56148123-56148142 Msa0777300:three_prime_UTR 30.0%
! CTCTTCTTTAGGAATGTTTA+TGG + chr5_2:56148347-56148366 Msa0777300:three_prime_UTR 30.0%
AATTTGACATCATTAAGCTG+AGG - chr5_2:56148489-56148508 None:intergenic 30.0%
AAGAATAGAAAAACCGGAGA+AGG - chr5_2:56143109-56143128 None:intergenic 35.0%
! TTTTGGCAACATGCAATTCA+TGG + chr5_2:56143227-56143246 Msa0777300:intron 35.0%
TATTAGACAGCCAAAATGCA+AGG + chr5_2:56143593-56143612 Msa0777300:intron 35.0%
!! TGCGATCATTTTTGTCAAAC+GGG + chr5_2:56143621-56143640 Msa0777300:CDS 35.0%
! TTGCAAGATGTCTGAAATTG+TGG - chr5_2:56143771-56143790 None:intergenic 35.0%
ACAATTTCAGACATCTTGCA+AGG + chr5_2:56143770-56143789 Msa0777300:CDS 35.0%
ATCTTGCAAGGAAAAGGTAA+AGG + chr5_2:56143782-56143801 Msa0777300:CDS 35.0%
ATCATAAACAGTGTCATCTG+TGG - chr5_2:56143834-56143853 None:intergenic 35.0%
CAGATGACACAAAACAATGT+TGG + chr5_2:56143953-56143972 Msa0777300:intron 35.0%
ACAAAACAATGTTGGAGCTT+TGG + chr5_2:56143961-56143980 Msa0777300:CDS 35.0%
!! TGTTTCATTGTTGATGGTGA+AGG - chr5_2:56144064-56144083 None:intergenic 35.0%
CGAATATCGTTTGAAGAATG+TGG - chr5_2:56144155-56144174 None:intergenic 35.0%
!! AAGACCTTGTTTGGATTTTG+CGG - chr5_2:56144190-56144209 None:intergenic 35.0%
! GGATTTGAAATGGATGTTGA+AGG - chr5_2:56144235-56144254 None:intergenic 35.0%
GAGGTTTGAACAATGAAACA+AGG - chr5_2:56144294-56144313 None:intergenic 35.0%
!! ACTTTATCCTCTTGATTTGG+AGG - chr5_2:56144313-56144332 None:intergenic 35.0%
! AGAGGATAAAGTCGCAATTT+TGG + chr5_2:56144321-56144340 Msa0777300:CDS 35.0%
GTGTAGCTTCTGATTATGTT+AGG + chr5_2:56144359-56144378 Msa0777300:CDS 35.0%
! AAAACCTTCCCTTTTACTTG+AGG + chr5_2:56144465-56144484 Msa0777300:CDS 35.0%
AATACCTCAAGTAAAAGGGA+AGG - chr5_2:56144472-56144491 None:intergenic 35.0%
ATAAGGGCTGAACATGATAA+GGG + chr5_2:56144736-56144755 Msa0777300:intron 35.0%
TACTAAGGGCTTGTATGTAT+TGG + chr5_2:56144808-56144827 Msa0777300:intron 35.0%
!! GCTTGTATGTATTGGCTTAT+TGG + chr5_2:56144816-56144835 Msa0777300:intron 35.0%
GCTTATTTGACCTTATCTAC+TGG + chr5_2:56144838-56144857 Msa0777300:intron 35.0%
TTCAGGTGATTAATTGGAGA+AGG + chr5_2:56145225-56145244 Msa0777300:intron 35.0%
! TATCTTTTTCTGATGCTTGC+AGG + chr5_2:56145258-56145277 Msa0777300:CDS 35.0%
CATGCACATGAGTATTCAAA+GGG + chr5_2:56145290-56145309 Msa0777300:CDS 35.0%
!! TCTTGCTGTTGAGCTATTTA+AGG + chr5_2:56145346-56145365 Msa0777300:CDS 35.0%
AGCACTTACAATGCACTAAT+GGG + chr5_2:56145398-56145417 Msa0777300:CDS 35.0%
ATGGGTGCTTATATGTTCAA+TGG + chr5_2:56145416-56145435 Msa0777300:CDS 35.0%
ATATTGTACGTAGCAACAGA+AGG - chr5_2:56145500-56145519 None:intergenic 35.0%
AGTGGATATATTAGGTGCAA+GGG - chr5_2:56145597-56145616 None:intergenic 35.0%
AAGTGGATATATTAGGTGCA+AGG - chr5_2:56145598-56145617 None:intergenic 35.0%
ATATATCTCCACTTGGATGT+GGG + chr5_2:56145637-56145656 Msa0777300:CDS 35.0%
! GTTTTCATATTAGGCTCAAC+AGG - chr5_2:56145701-56145720 None:intergenic 35.0%
ACTTACCTGTTAATGATTCG+TGG + chr5_2:56145719-56145738 Msa0777300:CDS 35.0%
CATAACCACGAATCATTAAC+AGG - chr5_2:56145727-56145746 None:intergenic 35.0%
GATGGAAAAGATATATTCGC+TGG + chr5_2:56145769-56145788 Msa0777300:CDS 35.0%
TAAACGACATGCCAATTATC+AGG + chr5_2:56145804-56145823 Msa0777300:CDS 35.0%
AAACGACATGCCAATTATCA+GGG + chr5_2:56145805-56145824 Msa0777300:CDS 35.0%
!! CATGGCTTGTATTCTTTTTC+AGG - chr5_2:56145905-56145924 None:intergenic 35.0%
CTGAAAAAGAATACAAGCCA+TGG + chr5_2:56145903-56145922 Msa0777300:CDS 35.0%
! AACGTCTGGTGAATTTTTCA+AGG - chr5_2:56146087-56146106 None:intergenic 35.0%
CTCCTTATATCATTCTAAGC+TGG + chr5_2:56146135-56146154 Msa0777300:CDS 35.0%
GACCAGCTTAGAATGATATA+AGG - chr5_2:56146140-56146159 None:intergenic 35.0%
! GGACATTTTGCATTTCTCTA+AGG - chr5_2:56146183-56146202 None:intergenic 35.0%
AGAAATGCAAAATGTCCTTG+AGG + chr5_2:56146186-56146205 Msa0777300:CDS 35.0%
! CATTATCCACAGTGTTTTCT+TGG - chr5_2:56146239-56146258 None:intergenic 35.0%
GGATAATGTACAAAGCTTAC+TGG + chr5_2:56146251-56146270 Msa0777300:CDS 35.0%
! TTGGATTGGATTGCATTCAA+AGG + chr5_2:56146505-56146524 Msa0777300:three_prime_UTR 35.0%
! CTTGATGGTATTTGCCTATT+TGG - chr5_2:56146709-56146728 None:intergenic 35.0%
! GAATGTGATAGTGAAAATGG+AGG + chr5_2:56146760-56146779 Msa0777300:three_prime_UTR 35.0%
AAGAATGTGGAAAAGACAAC+TGG + chr5_2:56146983-56147002 Msa0777300:three_prime_UTR 35.0%
AGATTGGAAAATGAGATTGG+AGG + chr5_2:56147025-56147044 Msa0777300:three_prime_UTR 35.0%
TGCTCTATCAGAACAATGTT+TGG + chr5_2:56147502-56147521 Msa0777300:intron 35.0%
!! GGTCTATGACGTTTTTGTTT+TGG - chr5_2:56147537-56147556 None:intergenic 35.0%
AAAGATGAGGATCTCTATCT+GGG - chr5_2:56147561-56147580 None:intergenic 35.0%
TATAGCATATGAGACCAAAG+GGG - chr5_2:56147605-56147624 None:intergenic 35.0%
GATATAGCATATGAGACCAA+AGG - chr5_2:56147607-56147626 None:intergenic 35.0%
ATTTGCAGAGTTGAAGCATA+TGG - chr5_2:56147632-56147651 None:intergenic 35.0%
TACGTAAACACACTAAGCTT+GGG - chr5_2:56147906-56147925 None:intergenic 35.0%
TTACGTAAACACACTAAGCT+TGG - chr5_2:56147907-56147926 None:intergenic 35.0%
TTCAAGTATCTATCTCCTGA+TGG - chr5_2:56147994-56148013 None:intergenic 35.0%
GAGATAGATACTTGAAACCA+TGG + chr5_2:56147998-56148017 Msa0777300:three_prime_UTR 35.0%
!! ACCTTTCCTTTACTGACTTT+GGG - chr5_2:56148036-56148055 None:intergenic 35.0%
ATCCTATCATAAACGATCAC+CGG - chr5_2:56148071-56148090 None:intergenic 35.0%
!!! CATTGTCATTTTTCTAACGC+CGG - chr5_2:56148145-56148164 None:intergenic 35.0%
!! CCTCTTTGAAAGGCAAATTT+TGG - chr5_2:56148227-56148246 None:intergenic 35.0%
CCAAAATTTGCCTTTCAAAG+AGG + chr5_2:56148224-56148243 Msa0777300:three_prime_UTR 35.0%
AAATTTGCCTTTCAAAGAGG+AGG + chr5_2:56148227-56148246 Msa0777300:three_prime_UTR 35.0%
! TTTAGCCCTTCAGTTTTTCA+TGG + chr5_2:56148418-56148437 Msa0777300:three_prime_UTR 35.0%
! TTAGCCCTTCAGTTTTTCAT+GGG + chr5_2:56148419-56148438 Msa0777300:three_prime_UTR 35.0%
AGAACCCATGAAAAACTGAA+GGG - chr5_2:56148426-56148445 None:intergenic 35.0%
TAGAACCCATGAAAAACTGA+AGG - chr5_2:56148427-56148446 None:intergenic 35.0%
GTAAGGGAATGACTTCAACA+TGG + chr5_2:56143403-56143422 Msa0777300:intron 40.0%
CAAATGCACGAGGTAAACTA+AGG - chr5_2:56143432-56143451 None:intergenic 40.0%
AAATTTGCGACAAATGCACG+AGG - chr5_2:56143442-56143461 None:intergenic 40.0%
! AGAAAAGGTGACGAGTTTTG+AGG - chr5_2:56143514-56143533 None:intergenic 40.0%
TCAGACATCTTGCAAGGAAA+AGG + chr5_2:56143776-56143795 Msa0777300:CDS 40.0%
! AAACAATGTTGGAGCTTTGG+TGG + chr5_2:56143964-56143983 Msa0777300:CDS 40.0%
GCTGGAATTATTGCAGAAAG+AGG + chr5_2:56144016-56144035 Msa0777300:CDS 40.0%
AGGATAACTGCGTGAACATT+TGG - chr5_2:56144044-56144063 None:intergenic 40.0%
GAAGAATGTGGGATTCGAAA+GGG - chr5_2:56144143-56144162 None:intergenic 40.0%
TGAAGAATGTGGGATTCGAA+AGG - chr5_2:56144144-56144163 None:intergenic 40.0%
! ACTAGGTCTAAGACCTTGTT+TGG - chr5_2:56144199-56144218 None:intergenic 40.0%
! GGTGGATTCTGGATTTGAAA+TGG - chr5_2:56144245-56144264 None:intergenic 40.0%
!! GACGTGGTTTGGTATTTGTT+CGG - chr5_2:56144266-56144285 None:intergenic 40.0%
! ATGAAACAAGGTCTAAGACG+TGG - chr5_2:56144282-56144301 None:intergenic 40.0%
GTTCAAACCTCCAAATCAAG+AGG + chr5_2:56144303-56144322 Msa0777300:CDS 40.0%
GCGACTTTATCCTCTTGATT+TGG - chr5_2:56144316-56144335 None:intergenic 40.0%
CTTATCATGTTCAGCCCTTA+TGG - chr5_2:56144737-56144756 None:intergenic 40.0%
CATAAGGGCTGAACATGATA+AGG + chr5_2:56144735-56144754 Msa0777300:intron 40.0%
ACTTATGCTGCCAGTAGATA+AGG - chr5_2:56144851-56144870 None:intergenic 40.0%
TATCCAAACATGCCCTGAAT+AGG + chr5_2:56145087-56145106 Msa0777300:intron 40.0%
TGAATACTCATGTGCATGCA+TGG - chr5_2:56145288-56145307 None:intergenic 40.0%
GCATGCACATGAGTATTCAA+AGG + chr5_2:56145289-56145308 Msa0777300:CDS 40.0%
TGCTGTTGAGCTATTTAAGG+AGG + chr5_2:56145349-56145368 Msa0777300:CDS 40.0%
CATTAGTGCATTGTAAGTGC+TGG - chr5_2:56145399-56145418 None:intergenic 40.0%
CAGCACTTACAATGCACTAA+TGG + chr5_2:56145397-56145416 Msa0777300:CDS 40.0%
TCACATGGAAGCAACATTCA+AGG + chr5_2:56145556-56145575 Msa0777300:CDS 40.0%
GTGGATATATTAGGTGCAAG+GGG - chr5_2:56145596-56145615 None:intergenic 40.0%
! TTGGTGGATATATCTCCACT+TGG + chr5_2:56145630-56145649 Msa0777300:CDS 40.0%
GATATATCTCCACTTGGATG+TGG + chr5_2:56145636-56145655 Msa0777300:CDS 40.0%
TATATCTCCACTTGGATGTG+GGG + chr5_2:56145638-56145657 Msa0777300:CDS 40.0%
ATTCGTGGTTATGCACACTT+GGG + chr5_2:56145734-56145753 Msa0777300:CDS 40.0%
TTATGCACACTTGGGTAATC+TGG + chr5_2:56145742-56145761 Msa0777300:CDS 40.0%
! GTTGATTAAGCTTTATGCCG+AGG + chr5_2:56145937-56145956 Msa0777300:CDS 40.0%
TTATGCCGAGGAAAACTGTT+TGG + chr5_2:56145949-56145968 Msa0777300:CDS 40.0%
! TTCCTCCAAACAGTTTTCCT+CGG - chr5_2:56145957-56145976 None:intergenic 40.0%
GGAAAACTGTTTGGAGGAAA+TGG + chr5_2:56145958-56145977 Msa0777300:CDS 40.0%
AATACCCATGGTCGTTACAA+CGG - chr5_2:56146017-56146036 None:intergenic 40.0%
TAACGACCATGGGTATTATG+AGG + chr5_2:56146020-56146039 Msa0777300:CDS 40.0%
TATGCACCTCATAATACCCA+TGG - chr5_2:56146029-56146048 None:intergenic 40.0%
CATTCTAAGCTGGTCATGTA+TGG + chr5_2:56146145-56146164 Msa0777300:CDS 40.0%
GCAAAATGTCCTTGAGGAAA+TGG + chr5_2:56146192-56146211 Msa0777300:CDS 40.0%
ATGTCCTTGAGGAAATGGAT+AGG + chr5_2:56146197-56146216 Msa0777300:CDS 40.0%
TGTCCTTGAGGAAATGGATA+GGG + chr5_2:56146198-56146217 Msa0777300:CDS 40.0%
TACAAAGCTTACTGGAGTTG+TGG + chr5_2:56146259-56146278 Msa0777300:CDS 40.0%
TTGGGACAAATGTTCAAGCA+TGG + chr5_2:56146307-56146326 Msa0777300:CDS 40.0%
TGGGACAAATGTTCAAGCAT+GGG + chr5_2:56146308-56146327 Msa0777300:CDS 40.0%
! CCAAATGGACTTCTTCAACT+GGG + chr5_2:56146563-56146582 Msa0777300:three_prime_UTR 40.0%
! CAAATGGACTTCTTCAACTG+GGG + chr5_2:56146564-56146583 Msa0777300:three_prime_UTR 40.0%
ACTGCAAATTCACCCTTACA+AGG - chr5_2:56146648-56146667 None:intergenic 40.0%
! AGGGTGAATTTGCAGTTTTG+AGG + chr5_2:56146652-56146671 Msa0777300:three_prime_UTR 40.0%
! GTATTTGCCTATTTGGTGAG+TGG - chr5_2:56146702-56146721 None:intergenic 40.0%
ATCACATTCCATCACAACAG+AGG - chr5_2:56146749-56146768 None:intergenic 40.0%
!!! CTAGCAAATGGTTTTGGATC+AGG - chr5_2:56146799-56146818 None:intergenic 40.0%
TCCATCTTCTTAGAGTGTGA+TGG + chr5_2:56146871-56146890 Msa0777300:three_prime_UTR 40.0%
TTGAATGATGTCTCTAGCAG+CGG - chr5_2:56146919-56146938 None:intergenic 40.0%
!!! TACGGGTTGCTTTTGAAGAT+TGG + chr5_2:56147009-56147028 Msa0777300:three_prime_UTR 40.0%
!! TTTTTAGTGTCAAGGTCCGT+AGG + chr5_2:56147100-56147119 Msa0777300:three_prime_UTR 40.0%
CTGAATTCAGCACAAAAACC+AGG - chr5_2:56147365-56147384 None:intergenic 40.0%
GAAAGATGAGGATCTCTATC+TGG - chr5_2:56147562-56147581 None:intergenic 40.0%
TTAAACATGTTCTGCCCCTT+TGG + chr5_2:56147588-56147607 Msa0777300:intron 40.0%
TTCAACTCTGCAAATTGCAG+AGG + chr5_2:56147637-56147656 Msa0777300:intron 40.0%
AAGTATCTATCTCCTGATGG+TGG - chr5_2:56147991-56148010 None:intergenic 40.0%
!! TTGGGTAGTGGAATTATCCA+TGG - chr5_2:56148018-56148037 None:intergenic 40.0%
ACCCAAAGTCAGTAAAGGAA+AGG + chr5_2:56148032-56148051 Msa0777300:three_prime_UTR 40.0%
!! CACCTTTCCTTTACTGACTT+TGG - chr5_2:56148037-56148056 None:intergenic 40.0%
TAGACAGCCAAAATGCAAGG+AGG + chr5_2:56143596-56143615 Msa0777300:intron 45.0%
! TCGCAATCCTCCTTGCATTT+TGG - chr5_2:56143606-56143625 None:intergenic 45.0%
TCAAACCGTGAAAAGGCAAC+TGG - chr5_2:56143704-56143723 None:intergenic 45.0%
AGCAGACTCAAACCGTGAAA+AGG - chr5_2:56143711-56143730 None:intergenic 45.0%
!! GGAAAAGGTAAAGGTGCTGA+TGG + chr5_2:56143791-56143810 Msa0777300:CDS 45.0%
!! GTAAAGGTGCTGATGGTTCT+TGG + chr5_2:56143798-56143817 Msa0777300:CDS 45.0%
TACGCCGCAAAATCCAAACA+AGG + chr5_2:56144183-56144202 Msa0777300:CDS 45.0%
! GGTATTTGTTCGGTGGATTC+TGG - chr5_2:56144256-56144275 None:intergenic 45.0%
!! GTGGTTTGGTATTTGTTCGG+TGG - chr5_2:56144263-56144282 None:intergenic 45.0%
! ACAAGGTCTAAGACGTGGTT+TGG - chr5_2:56144277-56144296 None:intergenic 45.0%
GTTCCTATTCAGGGCATGTT+TGG - chr5_2:56145093-56145112 None:intergenic 45.0%
!! TCGCTATCGGTTCCTATTCA+GGG - chr5_2:56145102-56145121 None:intergenic 45.0%
!! ATCGCTATCGGTTCCTATTC+AGG - chr5_2:56145103-56145122 None:intergenic 45.0%
!! TCAAAGGGCATTAAAGCTGC+AGG + chr5_2:56145305-56145324 Msa0777300:CDS 45.0%
GCAACAGAAGGATAGCAAGT+TGG - chr5_2:56145488-56145507 None:intergenic 45.0%
CTTGATGCTCACTGATCACA+TGG + chr5_2:56145541-56145560 Msa0777300:CDS 45.0%
GATTCGTGGTTATGCACACT+TGG + chr5_2:56145733-56145752 Msa0777300:CDS 45.0%
CTTGGGTAATCTGGAGAAGA+TGG + chr5_2:56145751-56145770 Msa0777300:CDS 45.0%
AGAACCGTTGTAACGACCAT+GGG + chr5_2:56146010-56146029 Msa0777300:CDS 45.0%
TGACCCTATCCATTTCCTCA+AGG - chr5_2:56146204-56146223 None:intergenic 45.0%
ATCGCACCAAGAAAACACTG+TGG + chr5_2:56146230-56146249 Msa0777300:CDS 45.0%
! GCCAAATGGACTTCTTCAAC+TGG + chr5_2:56146562-56146581 Msa0777300:three_prime_UTR 45.0%
CCCAGTTGAAGAAGTCCATT+TGG - chr5_2:56146566-56146585 None:intergenic 45.0%
!! GGTATGCATCAATTTGCTGC+TGG + chr5_2:56146609-56146628 Msa0777300:three_prime_UTR 45.0%
GAACATGACCTCTGTTGTGA+TGG + chr5_2:56146738-56146757 Msa0777300:three_prime_UTR 45.0%
! CTGCAGCTAGCAAATGGTTT+TGG - chr5_2:56146805-56146824 None:intergenic 45.0%
CAAGAACTGCAGCTAGCAAA+TGG - chr5_2:56146811-56146830 None:intergenic 45.0%
AGCTGCAGTTCTTGAGATGT+CGG + chr5_2:56146817-56146836 Msa0777300:three_prime_UTR 45.0%
! GCCATCACACTCTAAGAAGA+TGG - chr5_2:56146875-56146894 None:intergenic 45.0%
GGAAAAGACAACTGGCTGTA+CGG + chr5_2:56146991-56147010 Msa0777300:three_prime_UTR 45.0%
GAAAAGACAACTGGCTGTAC+GGG + chr5_2:56146992-56147011 Msa0777300:three_prime_UTR 45.0%
CACTAAGCTTGGGTCAGTAA+AGG - chr5_2:56147896-56147915 None:intergenic 45.0%
!! CCTTTACTGACTTTGGGTAG+TGG - chr5_2:56148030-56148049 None:intergenic 45.0%
CCACTACCCAAAGTCAGTAA+AGG + chr5_2:56148027-56148046 Msa0777300:three_prime_UTR 45.0%
!! GAAAGGTGCCATATTCTAGC+CGG + chr5_2:56148049-56148068 Msa0777300:three_prime_UTR 45.0%
! AACGATCACCGGCTAGAATA+TGG - chr5_2:56148060-56148079 None:intergenic 45.0%
AGCCGGTGATCGTTTATGAT+AGG + chr5_2:56148066-56148085 Msa0777300:three_prime_UTR 45.0%
! CATTTTTCTAACGCCGGAGA+AGG - chr5_2:56148139-56148158 None:intergenic 45.0%
AGCTTTGCCTCCTCTTTGAA+AGG - chr5_2:56148237-56148256 None:intergenic 45.0%
TCAAAGAGGAGGCAAAGCTT+TGG + chr5_2:56148238-56148257 Msa0777300:three_prime_UTR 45.0%
!! AGGCAAAGCTTTGGACTTGA+AGG + chr5_2:56148247-56148266 Msa0777300:three_prime_UTR 45.0%
!!! AATATAAAACTAAATTATTT+TGG - chr5_2:56144702-56144721 None:intergenic 5.0%
AACCGGAGAAGGTTGAAGCA+GGG - chr5_2:56143098-56143117 None:intergenic 50.0%
AAACCGGAGAAGGTTGAAGC+AGG - chr5_2:56143099-56143118 None:intergenic 50.0%
! TGTTTTGCAACGAGTCCGCA+TGG + chr5_2:56143661-56143680 Msa0777300:CDS 50.0%
GCAACAAGGGATTCACCATG+CGG - chr5_2:56143679-56143698 None:intergenic 50.0%
AAGGCAACTGGCTGCAACAA+GGG - chr5_2:56143692-56143711 None:intergenic 50.0%
AAAGGCAACTGGCTGCAACA+AGG - chr5_2:56143693-56143712 None:intergenic 50.0%
! TGCAGCCAGTTGCCTTTTCA+CGG + chr5_2:56143696-56143715 Msa0777300:CDS 50.0%
TGCTACACCTGCTCGTATTG+AGG + chr5_2:56143727-56143746 Msa0777300:CDS 50.0%
! GTGCTGATGGTTCTTGGCTT+TGG + chr5_2:56143804-56143823 Msa0777300:CDS 50.0%
! CTTTGGTGGTCGTGAAACCA+GGG + chr5_2:56143978-56143997 Msa0777300:CDS 50.0%
! TTTGGTGGTCGTGAAACCAG+GGG + chr5_2:56143979-56143998 Msa0777300:CDS 50.0%
! GCAATTGATTTCTCCTCCCC+TGG - chr5_2:56143998-56144017 None:intergenic 50.0%
GGGGAGGAGAAATCAATTGC+TGG + chr5_2:56143998-56144017 Msa0777300:CDS 50.0%
CATATCACCCCACATCCAAG+TGG - chr5_2:56145648-56145667 None:intergenic 50.0%
CACTTGGATGTGGGGTGATA+TGG + chr5_2:56145646-56145665 Msa0777300:CDS 50.0%
TGCCGAGGAAAACTGTTTGG+AGG + chr5_2:56145952-56145971 Msa0777300:CDS 50.0%
CAGAACCGTTGTAACGACCA+TGG + chr5_2:56146009-56146028 Msa0777300:CDS 50.0%
ACCAGACGTTCTGTACTTGC+AGG + chr5_2:56146097-56146116 Msa0777300:CDS 50.0%
CCAGACGTTCTGTACTTGCA+GGG + chr5_2:56146098-56146117 Msa0777300:CDS 50.0%
GAGTTGTGGTCAGAGATCCT+TGG + chr5_2:56146273-56146292 Msa0777300:CDS 50.0%
GAACGCACCACTCACCAAAT+AGG + chr5_2:56146692-56146711 Msa0777300:three_prime_UTR 50.0%
GAGATTGGAGGAGTTCATGC+AGG + chr5_2:56147037-56147056 Msa0777300:three_prime_UTR 50.0%
GGAGGAGTTCATGCAGGTAA+TGG + chr5_2:56147043-56147062 Msa0777300:three_prime_UTR 50.0%
GATGAGGATCTCTATCTGGG+AGG - chr5_2:56147558-56147577 None:intergenic 50.0%
!! CTGATGGTGGACAAGAAACC+AGG - chr5_2:56147978-56147997 None:intergenic 50.0%
CTGGTTTCTTGTCCACCATC+AGG + chr5_2:56147976-56147995 Msa0777300:intron 50.0%
ACTCTAGCATACTGAGCAGC+AGG - chr5_2:56148200-56148219 None:intergenic 50.0%
TGAAGCAGGGAGGTTGTAGG+TGG - chr5_2:56143085-56143104 None:intergenic 55.0%
GGTTGAAGCAGGGAGGTTGT+AGG - chr5_2:56143088-56143107 None:intergenic 55.0%
CTCCCTGCTTCAACCTTCTC+CGG + chr5_2:56143093-56143112 Msa0777300:five_prime_UTR 55.0%
CCATGCTCCTCAATACGAGC+AGG - chr5_2:56143737-56143756 None:intergenic 55.0%
CCTGCTCGTATTGAGGAGCA+TGG + chr5_2:56143734-56143753 Msa0777300:CDS 55.0%
! GCTTTGGTGGTCGTGAAACC+AGG + chr5_2:56143977-56143996 Msa0777300:CDS 55.0%
CCCTGCAAGTACAGAACGTC+TGG - chr5_2:56146101-56146120 None:intergenic 55.0%
GACGTTCTGTACTTGCAGGG+TGG + chr5_2:56146101-56146120 Msa0777300:CDS 55.0%
AGCAGGGAGGTTGTAGGTGG+TGG - chr5_2:56143082-56143101 None:intergenic 60.0%
CGGAGAAGGTTGAAGCAGGG+AGG - chr5_2:56143095-56143114 None:intergenic 60.0%
GGTGGTCGTGAAACCAGGGG+AGG + chr5_2:56143982-56144001 Msa0777300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 56143076 56148556 56143076 ID=Msa0777300;Name=Msa0777300
chr5_2 mRNA 56143076 56148556 56143076 ID=Msa0777300-mRNA-1;Parent=Msa0777300;Name=Msa0777300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|0.8|1|0.5|0.2|5|1317|640
chr5_2 exon 56143076 56143172 56143076 ID=Msa0777300-mRNA-1:exon:16586;Parent=Msa0777300-mRNA-1
chr5_2 exon 56143599 56143865 56143599 ID=Msa0777300-mRNA-1:exon:16587;Parent=Msa0777300-mRNA-1
chr5_2 exon 56143956 56144486 56143956 ID=Msa0777300-mRNA-1:exon:16588;Parent=Msa0777300-mRNA-1
chr5_2 exon 56145230 56147121 56145230 ID=Msa0777300-mRNA-1:exon:16589;Parent=Msa0777300-mRNA-1
chr5_2 exon 56147998 56148556 56147998 ID=Msa0777300-mRNA-1:exon:16590;Parent=Msa0777300-mRNA-1
chr5_2 five_prime_UTR 56143076 56143172 56143076 ID=Msa0777300-mRNA-1:five_prime_utr;Parent=Msa0777300-mRNA-1
chr5_2 five_prime_UTR 56143599 56143607 56143599 ID=Msa0777300-mRNA-1:five_prime_utr;Parent=Msa0777300-mRNA-1
chr5_2 CDS 56143608 56143865 56143608 ID=Msa0777300-mRNA-1:cds;Parent=Msa0777300-mRNA-1
chr5_2 CDS 56143956 56144486 56143956 ID=Msa0777300-mRNA-1:cds;Parent=Msa0777300-mRNA-1
chr5_2 CDS 56145230 56146363 56145230 ID=Msa0777300-mRNA-1:cds;Parent=Msa0777300-mRNA-1
chr5_2 three_prime_UTR 56146364 56147121 56146364 ID=Msa0777300-mRNA-1:three_prime_utr;Parent=Msa0777300-mRNA-1
chr5_2 three_prime_UTR 56147998 56148556 56147998 ID=Msa0777300-mRNA-1:three_prime_utr;Parent=Msa0777300-mRNA-1
Gene Sequence

>Msa0777300

ATGCAAGGAGGATTGCGATCATTTTTGTCAAACGGGAACATCATTAAAAATGCTGTTTTGCAACGAGTCCGCATGGTGAATCCCTTGTTGCAGCCAGTTGCCTTTTCACGGTTTGAGTCTGCTACACCTGCTCGTATTGAGGAGCATGGTTTCGAGAGCACCACAATTTCAGACATCTTGCAAGGAAAAGGTAAAGGTGCTGATGGTTCTTGGCTTTGGTGCACCACAGATGACACTGTTTATGATGCTGTCAAATTGATGACACAAAACAATGTTGGAGCTTTGGTGGTCGTGAAACCAGGGGAGGAGAAATCAATTGCTGGAATTATTGCAGAAAGAGGTACCAAATGTTCACGCAGTTATCCTTCACCATCAACAATGAAACATTTTTGGAGATTCACTTCGAAAGTATCAAAATCTTTCAAATTCAACGAATTGCATACCCTTTCGAATCCCACATTCTTCAAACGATATTCGAATTCGAATACGCCGCAAAATCCAAACAAGGTCTTAGACCTAGTTTCATTTCTCAAACCTTCAACATCCATTTCAAATCCAGAATCCACCGAACAAATACCAAACCACGTCTTAGACCTTGTTTCATTGTTCAAACCTCCAAATCAAGAGGATAAAGTCGCAATTTTGGCGAAAGATTTGATTCGTGTAGCTTCTGATTATGTTAGGGTTTCATATATTTTGGATCAGAATTCTGAATATTTGATTGGATCTCACCCTGTTTATATTCAACTTTTGAATCAATTGAATTCAAAACCTTCCCTTTTACTTGAGGTGATTAATTGGAGAAGGAAGCGAAAGCTATCTTTTTCTGATGCTTGCAGGAATTCCATGCATGCACATGAGTATTCAAAGGGCATTAAAGCTGCAGGAAGATGTAAGAATATTGATCTTGCTGTTGAGCTATTTAAGGAGGCAGAATTTAAGGGTGTGAAGATAACCAGCACTTACAATGCACTAATGGGTGCTTATATGTTCAATGGTCTTTCTGATAAATGCTACTCTTTGTTTCTCGACATGAAAAAGGATCCAACTTGCTATCCTTCTGTTGCTACGTACAATATTGTTATATCTGTTTTTGGTCGCTTGATGCTCACTGATCACATGGAAGCAACATTCAAGGAGATGAACGAGTTACCCCTTGCACCTAATATATCCACTTATAATTATTTAATTGGTGGATATATCTCCACTTGGATGTGGGGTGATATGGAGAGAGTTTTTCAAGTGTTAAATTCAGGCCCTGTTGAGCCTAATATGAAAACTTACCTGTTAATGATTCGTGGTTATGCACACTTGGGTAATCTGGAGAAGATGGAAAAGATATATTCGCTGGTAAAGGATAATGTAAACGACATGCCAATTATCAGGGTTATGATATGTGCCTATTGTAAAAGTTCTGATGCAAATAAAATGAATAAAGTAAAGGCGTTGTTAAAGTTGATCCCTGAAAAAGAATACAAGCCATGGTTAAATGTGTTGTTGATTAAGCTTTATGCCGAGGAAAACTGTTTGGAGGAAATGGATAATGCAATAAATGAGGCATTTAAGCGCAGAACCGTTGTAACGACCATGGGTATTATGAGGTGCATAATTACAGCTTATTTTCGGAACAATGCGATAGAAAGCCTTGAAAAATTCACCAGACGTTCTGTACTTGCAGGGTGGAGAATGTGCTACTCCTTATATCATTCTAAGCTGGTCATGTATGGTTCACAAAAGAACCTTAGAGAAATGCAAAATGTCCTTGAGGAAATGGATAGGGTCAACATGCATCGCACCAAGAAAACACTGTGGATAATGTACAAAGCTTACTGGAGTTGTGGTCAGAGATCCTTGGTTTTGAAAATATTGGGACAAATGTTCAAGCATGGGCATGAAGTTCCCATTGATGCATTTCCATCATAA
Protein sequence

>Msa0777300

MQGGLRSFLSNGNIIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDILQGKGKGADGSWLWCTTDDTVYDAVKLMTQNNVGALVVVKPGEEKSIAGIIAERGTKCSRSYPSPSTMKHFWRFTSKVSKSFKFNELHTLSNPTFFKRYSNSNTPQNPNKVLDLVSFLKPSTSISNPESTEQIPNHVLDLVSLFKPPNQEDKVAILAKDLIRVASDYVRVSYILDQNSEYLIGSHPVYIQLLNQLNSKPSLLLEVINWRRKRKLSFSDACRNSMHAHEYSKGIKAAGRCKNIDLAVELFKEAEFKGVKITSTYNALMGAYMFNGLSDKCYSLFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEATFKEMNELPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIYSLVKDNVNDMPIIRVMICAYCKSSDANKMNKVKALLKLIPEKEYKPWLNVLLIKLYAEENCLEEMDNAINEAFKRRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYSLYHSKLVMYGSQKNLREMQNVLEEMDRVNMHRTKKTLWIMYKAYWSCGQRSLVLKILGQMFKHGHEVPIDAFPS*