Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777480 | XP_003616034.2 | 95.674 | 786 | 34 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777480 | sp|Q6Z3U3|Y7797_ORYSJ | 41.322 | 847 | 396 | 20 | 6 | 771 | 17 | 843 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777480 | G7K0T7 | 95.674 | 786 | 34 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1527 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0777480 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0777480 | Msa0855070 | 0.806850 | 6.733822e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777480 | MtrunA17_Chr5g0432721 | 95.674 | 786 | 34 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1527 |
| Msa0777480 | MtrunA17_Chr3g0107701 | 55.952 | 840 | 300 | 14 | 1 | 778 | 1 | 832 | 0.0 | 852 |
| Msa0777480 | MtrunA17_Chr4g0012861 | 43.510 | 832 | 397 | 15 | 1 | 777 | 1 | 814 | 0.0 | 612 |
| Msa0777480 | MtrunA17_Chr2g0281191 | 41.241 | 548 | 222 | 12 | 283 | 774 | 314 | 817 | 2.05e-110 | 357 |
| Msa0777480 | MtrunA17_Chr2g0281191 | 44.628 | 121 | 50 | 4 | 6 | 119 | 31 | 141 | 4.87e-22 | 102 |
| Msa0777480 | MtrunA17_Chr7g0244871 | 58.065 | 93 | 39 | 0 | 314 | 406 | 5 | 97 | 2.38e-32 | 120 |
| Msa0777480 | MtrunA17_Chr7g0251891 | 48.235 | 85 | 43 | 1 | 321 | 404 | 16 | 100 | 1.82e-19 | 87.4 |
| Msa0777480 | MtrunA17_Chr7g0237841 | 39.216 | 102 | 60 | 2 | 321 | 420 | 623 | 724 | 1.42e-15 | 81.3 |
| Msa0777480 | MtrunA17_Chr1g0178071 | 37.037 | 135 | 64 | 6 | 302 | 422 | 54 | 181 | 4.88e-15 | 77.0 |
| Msa0777480 | MtrunA17_Chr5g0422501 | 41.818 | 110 | 47 | 4 | 321 | 417 | 235 | 340 | 5.80e-14 | 74.7 |
| Msa0777480 | MtrunA17_Chr7g0276471 | 38.462 | 91 | 51 | 3 | 321 | 408 | 117 | 205 | 1.68e-13 | 73.6 |
| Msa0777480 | MtrunA17_Chr7g0266821 | 41.176 | 102 | 50 | 5 | 326 | 421 | 65 | 162 | 4.94e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777480 | AT4G32010.2 | 41.153 | 746 | 314 | 15 | 3 | 706 | 4 | 666 | 1.65e-174 | 521 |
| Msa0777480 | AT4G32010.1 | 40.933 | 750 | 314 | 16 | 3 | 706 | 4 | 670 | 1.37e-172 | 516 |
| Msa0777480 | AT2G30470.1 | 40.441 | 816 | 361 | 19 | 1 | 774 | 6 | 738 | 2.03e-172 | 516 |
| Msa0777480 | AT4G21550.2 | 33.554 | 453 | 259 | 10 | 3 | 437 | 14 | 442 | 1.74e-69 | 238 |
| Msa0777480 | AT4G21550.3 | 33.703 | 451 | 257 | 10 | 5 | 437 | 16 | 442 | 1.23e-68 | 236 |
| Msa0777480 | AT4G21550.1 | 33.554 | 453 | 259 | 10 | 3 | 437 | 14 | 442 | 2.18e-68 | 240 |
| Msa0777480 | AT4G21550.1 | 40.336 | 119 | 56 | 4 | 657 | 774 | 551 | 655 | 2.81e-12 | 70.9 |
| Msa0777480 | AT3G26790.1 | 45.882 | 85 | 45 | 1 | 321 | 404 | 91 | 175 | 6.56e-18 | 85.9 |
| Msa0777480 | AT3G24650.1 | 41.176 | 102 | 58 | 2 | 321 | 420 | 571 | 672 | 6.85e-16 | 82.4 |
| Msa0777480 | AT1G28300.1 | 41.414 | 99 | 56 | 2 | 321 | 418 | 170 | 267 | 1.65e-15 | 79.3 |
| Msa0777480 | AT5G06250.5 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.43e-15 | 77.4 |
| Msa0777480 | AT5G06250.4 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.49e-15 | 77.8 |
| Msa0777480 | AT4G01500.1 | 43.820 | 89 | 47 | 2 | 321 | 408 | 35 | 121 | 3.08e-15 | 78.2 |
| Msa0777480 | AT5G06250.2 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 3.16e-15 | 77.4 |
| Msa0777480 | AT2G36080.4 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 3.39e-15 | 74.7 |
| Msa0777480 | AT2G36080.2 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 3.39e-15 | 74.7 |
| Msa0777480 | AT5G06250.3 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 3.68e-15 | 77.0 |
| Msa0777480 | AT5G06250.1 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 4.42e-15 | 76.6 |
| Msa0777480 | AT2G36080.1 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 6.62e-15 | 75.9 |
| Msa0777480 | AT2G36080.3 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 6.83e-15 | 75.5 |
| Msa0777480 | AT2G46870.1 | 40.659 | 91 | 49 | 3 | 321 | 408 | 34 | 122 | 7.65e-15 | 76.6 |
| Msa0777480 | AT1G13260.1 | 42.391 | 92 | 47 | 3 | 321 | 408 | 187 | 276 | 8.77e-15 | 77.0 |
| Msa0777480 | AT3G25730.1 | 38.318 | 107 | 57 | 4 | 321 | 420 | 182 | 286 | 3.00e-14 | 75.1 |
| Msa0777480 | AT3G61970.1 | 38.298 | 94 | 50 | 3 | 321 | 408 | 22 | 113 | 7.85e-14 | 73.6 |
| Msa0777480 | AT1G68840.2 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.23e-13 | 72.8 |
| Msa0777480 | AT1G68840.1 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.23e-13 | 72.8 |
| Msa0777480 | AT1G01030.2 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 4.84e-13 | 71.6 |
| Msa0777480 | AT1G01030.1 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 5.87e-13 | 71.6 |
| Msa0777480 | AT3G11580.1 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 6.27e-13 | 70.5 |
| Msa0777480 | AT3G11580.4 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 4.68e-12 | 67.0 |
| Msa0777480 | AT3G11580.2 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 4.68e-12 | 67.0 |
| Msa0777480 | AT3G11580.5 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 4.68e-12 | 67.0 |
| Msa0777480 | AT3G11580.3 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 1.16e-11 | 67.8 |
Find 211 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATTGTTACAATATT+TGG | 0.086549 | 5_2:+56449515 | None:intergenic |
| ATTCAAGAACACAAGCTTTC+AGG | 0.213336 | 5_2:-56448585 | Msa0777480:CDS |
| CACTTAACTTCTTCGGTCTT+TGG | 0.232028 | 5_2:+56451354 | None:intergenic |
| ACTTAACACCTTCTCAAATA+AGG | 0.237548 | 5_2:+56450523 | None:intergenic |
| CCCGCATTTGTTGCAGAGTT+TGG | 0.256841 | 5_2:+56453067 | None:intergenic |
| AATGCAGTAAATGCTGTTAA+AGG | 0.256935 | 5_2:+56451279 | None:intergenic |
| TATGATTAATTTGATTGTTT+TGG | 0.258238 | 5_2:+56448304 | None:intergenic |
| CAACTGCTTCAGATTCTAAT+TGG | 0.263143 | 5_2:+56448331 | None:intergenic |
| TTCTAACGGCATTTCGATAA+AGG | 0.267420 | 5_2:-56449876 | Msa0777480:CDS |
| ATCAGTTACTTTCTCGATAC+TGG | 0.269074 | 5_2:-56450975 | Msa0777480:CDS |
| TTTACAGTTCCAAGATATAA+TGG | 0.271409 | 5_2:-56450297 | Msa0777480:CDS |
| TATACCTCAGCACACGCTTT+TGG | 0.274011 | 5_2:+56450464 | None:intergenic |
| TGAAGACTTTCTTGTTCCTT+TGG | 0.285526 | 5_2:+56448994 | None:intergenic |
| AAGAAGAGGTCTCGCAATAT+TGG | 0.296576 | 5_2:-56449641 | Msa0777480:CDS |
| TACATCCTACTGTTGTTATT+AGG | 0.308177 | 5_2:+56450242 | None:intergenic |
| AACGGGGAACCTTACTTAAA+TGG | 0.309832 | 5_2:-56449776 | Msa0777480:CDS |
| ACGGATGAGGGAAGCCTAAA+TGG | 0.318513 | 5_2:-56448228 | Msa0777480:CDS |
| GTTAAGGAGAAATATAAAAT+TGG | 0.325578 | 5_2:+56447956 | None:intergenic |
| CAATTAAATGCTGGTGATAC+TGG | 0.325898 | 5_2:-56450182 | Msa0777480:intron |
| CATCATATTCTTCAAATACT+TGG | 0.347609 | 5_2:+56449492 | None:intergenic |
| TTACAGTTCCAAGATATAAT+GGG | 0.352438 | 5_2:-56450296 | Msa0777480:CDS |
| CCTCAGAATTTGAACTCATT+AGG | 0.359994 | 5_2:-56449833 | Msa0777480:CDS |
| AGGATACTGAAAATCATAAT+AGG | 0.362554 | 5_2:-56451554 | Msa0777480:CDS |
| CCAACTAAACTGTGCAGTTA+AGG | 0.364395 | 5_2:+56447940 | None:intergenic |
| CCTCAAGCTGACCTCCATTT+AGG | 0.367489 | 5_2:+56448214 | None:intergenic |
| GCAAACATCTCAGTCTATAT+TGG | 0.370039 | 5_2:-56451097 | Msa0777480:CDS |
| AAATTCCACCGTCATGAAAC+TGG | 0.376289 | 5_2:-56451945 | Msa0777480:CDS |
| CTGGTGGAACAAGCTGTTAA+AGG | 0.377011 | 5_2:-56451468 | Msa0777480:CDS |
| GCCTAGTGCTGCGGGACAAT+TGG | 0.377079 | 5_2:-56448184 | Msa0777480:CDS |
| TTCAATCAATGAAAGGTAAC+GGG | 0.377988 | 5_2:-56449793 | Msa0777480:CDS |
| TGAATCTTGAATCTTGAAAC+TGG | 0.380857 | 5_2:-56453353 | Msa0777480:five_prime_UTR |
| CTTGTTCCTTTGGACCGAGC+TGG | 0.382544 | 5_2:+56449004 | None:intergenic |
| TGAGGTGCACCAGAAAAGTT+TGG | 0.383323 | 5_2:+56449851 | None:intergenic |
| TAATATGACTAGTCATGCTT+TGG | 0.383891 | 5_2:+56448108 | None:intergenic |
| GATGGCATGGTTTCATGTAT+TGG | 0.390905 | 5_2:-56451378 | Msa0777480:CDS |
| AAAACCAGTGCCTCTCCATC+AGG | 0.394979 | 5_2:-56449350 | Msa0777480:CDS |
| ACATTCAGAACATCTGCGTT+TGG | 0.398523 | 5_2:-56449753 | Msa0777480:CDS |
| GAACATCTGCGTTTGGGTAA+TGG | 0.398608 | 5_2:-56449746 | Msa0777480:CDS |
| CAATGGTCCATTGCAGCAAC+TGG | 0.398704 | 5_2:-56449678 | Msa0777480:CDS |
| CAATTCTACACAACTGCATA+AGG | 0.399404 | 5_2:+56451442 | None:intergenic |
| CCGAGTGATGCAGGTCGAAT+TGG | 0.400991 | 5_2:-56450500 | Msa0777480:CDS |
| CATTCAGAACATCTGCGTTT+GGG | 0.404927 | 5_2:-56449752 | Msa0777480:CDS |
| AACAATGCAAGTGATCGATA+TGG | 0.408713 | 5_2:-56451513 | Msa0777480:CDS |
| ATGAGTCTTGAAACAAATAA+AGG | 0.410706 | 5_2:-56451048 | Msa0777480:CDS |
| AGTTTCCATTTCTTCATGAC+TGG | 0.412100 | 5_2:+56448146 | None:intergenic |
| TAACCCCTCCCAGCTTTGTC+TGG | 0.414478 | 5_2:-56451711 | Msa0777480:intron |
| TCATCCCAGTCATGAAGAAA+TGG | 0.415741 | 5_2:-56448151 | Msa0777480:CDS |
| AGAAGAGGTCTCGCAATATT+GGG | 0.416834 | 5_2:-56449640 | Msa0777480:CDS |
| CTGCCGTTGGCCACTGAGAT+TGG | 0.423759 | 5_2:-56451165 | Msa0777480:CDS |
| TCGTTCGAGTACCTTGATTT+CGG | 0.425356 | 5_2:-56451758 | Msa0777480:CDS |
| TTTAACAGCATTTACTGCAT+TGG | 0.425792 | 5_2:-56451277 | Msa0777480:CDS |
| AGGCAAGGCAAGTGCATGTC+GGG | 0.425926 | 5_2:+56448406 | None:intergenic |
| ACTCGTTCCCCATTATATCT+TGG | 0.426035 | 5_2:+56450288 | None:intergenic |
| CTTAACACCTTCTCAAATAA+GGG | 0.428464 | 5_2:+56450524 | None:intergenic |
| GAATTGACACTTAACTTCTT+CGG | 0.430100 | 5_2:+56451347 | None:intergenic |
| TTCAAAAGGAATGGTAAAGA+TGG | 0.430406 | 5_2:-56447905 | Msa0777480:three_prime_UTR |
| TGGAAACTGATACATATAAC+AGG | 0.432852 | 5_2:-56448131 | Msa0777480:CDS |
| TCTGAATGTCCATTTAAGTA+AGG | 0.433067 | 5_2:+56449767 | None:intergenic |
| CCTTAACTGCACAGTTTAGT+TGG | 0.436398 | 5_2:-56447940 | Msa0777480:three_prime_UTR |
| CTTATGCAGTTGTGTAGAAT+TGG | 0.437808 | 5_2:-56451441 | Msa0777480:CDS |
| GAGGCAGAATTGAAGAGATT+AGG | 0.439797 | 5_2:-56447989 | Msa0777480:three_prime_UTR |
| TATTGTAAGGAAGGTTCAAC+TGG | 0.440184 | 5_2:-56453131 | Msa0777480:CDS |
| CAACAGTAGGATGTATGTAT+TGG | 0.441536 | 5_2:-56450234 | Msa0777480:CDS |
| GGGTGGTCTTTGATCTCTGG+TGG | 0.449691 | 5_2:-56453095 | Msa0777480:CDS |
| ACATTTAGTCGGATAGATCC+TGG | 0.451349 | 5_2:-56450079 | Msa0777480:CDS |
| CCAGCTGACGACGACTCGTC+AGG | 0.453820 | 5_2:+56448513 | None:intergenic |
| CAAGAGCTGGAGAAATTGTC+GGG | 0.454716 | 5_2:-56450937 | Msa0777480:CDS |
| TTGACTTTGGATTGGGAGAG+AGG | 0.456518 | 5_2:-56453208 | Msa0777480:five_prime_UTR |
| AAAGGGTGGTCTTTGATCTC+TGG | 0.456650 | 5_2:-56453098 | Msa0777480:CDS |
| ACAGAAAAGTGAATTCTCAT+AGG | 0.458212 | 5_2:+56451971 | None:intergenic |
| CTGCATTGGCAAGAGCATCT+AGG | 0.465149 | 5_2:+56448562 | None:intergenic |
| ATGAATAATTATTGTAAGGA+AGG | 0.465785 | 5_2:-56453140 | Msa0777480:CDS |
| CTCTTTGAGCTTGCGACCAA+CGG | 0.474847 | 5_2:+56451400 | None:intergenic |
| AGTCATATTAAAACAACTGC+AGG | 0.477690 | 5_2:-56448095 | Msa0777480:three_prime_UTR |
| CCTGACGAGTCGTCGTCAGC+TGG | 0.478183 | 5_2:-56448513 | Msa0777480:CDS |
| AAGAAATTCTGTTCTGCCGT+TGG | 0.479555 | 5_2:-56451178 | Msa0777480:CDS |
| CCAAACTCTGCAACAAATGC+GGG | 0.482509 | 5_2:-56453067 | Msa0777480:intron |
| CATTCAACCACCAAGTGGAC+AGG | 0.483217 | 5_2:-56448439 | Msa0777480:CDS |
| TGGGTAATGGAACTGCTGAT+TGG | 0.484375 | 5_2:-56449733 | Msa0777480:CDS |
| TTTATTTGTTTCAAGACTCA+TGG | 0.486601 | 5_2:+56451050 | None:intergenic |
| CTATGGAATTGAGACTTACA+TGG | 0.489129 | 5_2:-56449580 | Msa0777480:CDS |
| ACAATATTTGGCTTGACACT+AGG | 0.490295 | 5_2:+56449527 | None:intergenic |
| GCATCGTAAGGCTCTTGAAC+CGG | 0.491358 | 5_2:+56448367 | None:intergenic |
| GCCAAATATTGTAACAATTG+AGG | 0.493508 | 5_2:-56449516 | Msa0777480:CDS |
| CCTTCACATCAGCAGGTGGC+CGG | 0.497637 | 5_2:+56451004 | None:intergenic |
| CATTCATAGCGAAGATGCTA+TGG | 0.498765 | 5_2:-56449597 | Msa0777480:CDS |
| GTGTATGAATAATTATTGTA+AGG | 0.498958 | 5_2:-56453144 | Msa0777480:CDS |
| ATTGCCTAAAACTGCTGCAT+TGG | 0.500146 | 5_2:+56448548 | None:intergenic |
| AACTTATACCACCGAAATCA+AGG | 0.500512 | 5_2:+56451747 | None:intergenic |
| CCGGCCACCTGCTGATGTGA+AGG | 0.500794 | 5_2:-56451004 | Msa0777480:CDS |
| GTGTTAAGTCCGAGTGATGC+AGG | 0.501935 | 5_2:-56450509 | Msa0777480:CDS |
| TCAGCAGGTGGCCGGCGTGG+TGG | 0.502029 | 5_2:+56451012 | None:intergenic |
| GTTTCCATTTCTTCATGACT+GGG | 0.503416 | 5_2:+56448147 | None:intergenic |
| GGTGGTCTTTGATCTCTGGT+GGG | 0.503585 | 5_2:-56453094 | Msa0777480:CDS |
| TCAAGAGCTGGAGAAATTGT+CGG | 0.505861 | 5_2:-56450938 | Msa0777480:CDS |
| CAGTAGGATGTATGTATTGG+AGG | 0.506980 | 5_2:-56450231 | Msa0777480:CDS |
| TGACTTTGGATTGGGAGAGA+GGG | 0.509326 | 5_2:-56453207 | Msa0777480:five_prime_UTR |
| TTACCCTGATGGAGAGGCAC+TGG | 0.511162 | 5_2:+56449346 | None:intergenic |
| ATTATATCTTGGAACTGTAA+AGG | 0.513021 | 5_2:+56450299 | None:intergenic |
| TCAACTGGTGAATGGAAGAA+AGG | 0.514062 | 5_2:-56453116 | Msa0777480:CDS |
| CGGCCACCTGCTGATGTGAA+GGG | 0.515875 | 5_2:-56451003 | Msa0777480:CDS |
| TTAACCTTACCAGACAAAGC+TGG | 0.516700 | 5_2:+56451702 | None:intergenic |
| CTTCAATCAATGAAAGGTAA+CGG | 0.516842 | 5_2:-56449794 | Msa0777480:CDS |
| ATTGGAGAAGGTAAACTTGA+GGG | 0.521191 | 5_2:-56451147 | Msa0777480:CDS |
| AGCTCTTGATCAGTAATCCT+TGG | 0.521679 | 5_2:+56450952 | None:intergenic |
| GGTATATAATCTTACCCTGA+TGG | 0.522702 | 5_2:+56449335 | None:intergenic |
| AAACATCCGAGGCATCGTCC+TGG | 0.526966 | 5_2:-56448480 | Msa0777480:CDS |
| AGGAAGGTTCAACTGGTGAA+TGG | 0.526974 | 5_2:-56453124 | Msa0777480:CDS |
| CGATATGGTGAACATATTGA+TGG | 0.528805 | 5_2:-56451498 | Msa0777480:CDS |
| TTGTTACAGTAACATTTAGT+CGG | 0.530093 | 5_2:-56450090 | Msa0777480:intron |
| TGAAACGCTTTCACTAAAGA+TGG | 0.532158 | 5_2:-56451217 | Msa0777480:CDS |
| CCAATTCGACCTGCATCACT+CGG | 0.532323 | 5_2:+56450500 | None:intergenic |
| TTTCAGTTTCAGAGAAGAAG+AGG | 0.532408 | 5_2:-56449655 | Msa0777480:CDS |
| AATCTTCTTCAATCAATGAA+AGG | 0.533019 | 5_2:-56449800 | Msa0777480:CDS |
| ACTGAAACCAGTTGCTGCAA+TGG | 0.534324 | 5_2:+56449671 | None:intergenic |
| TACAAGTCACTCGACGGATG+AGG | 0.536310 | 5_2:-56448241 | Msa0777480:CDS |
| TTGGCTCAACTATCAAAGAC+TGG | 0.539999 | 5_2:-56451078 | Msa0777480:CDS |
| TGATTTCAACACTAACATTG+AGG | 0.542603 | 5_2:-56453256 | Msa0777480:five_prime_UTR |
| ATCACCAGCATTTAATTGCA+AGG | 0.546441 | 5_2:+56450187 | None:intergenic |
| ATTAATCATATAGATGAAGC+AGG | 0.546533 | 5_2:-56448291 | Msa0777480:CDS |
| CAGTCCTTGCAATTAAATGC+TGG | 0.547662 | 5_2:-56450191 | Msa0777480:CDS |
| TAACCTTACCAGACAAAGCT+GGG | 0.549034 | 5_2:+56451703 | None:intergenic |
| GTGCATCCAGGACGATGCCT+CGG | 0.549949 | 5_2:+56448474 | None:intergenic |
| TACTTTCTCGATACTGGCCA+AGG | 0.550936 | 5_2:-56450969 | Msa0777480:CDS |
| TTGTTTCATTTAGGAACCCC+CGG | 0.551856 | 5_2:-56449387 | Msa0777480:intron |
| GTTGTTGAGCCTAGTGCTGC+GGG | 0.553930 | 5_2:-56448192 | Msa0777480:CDS |
| GTCATATTAAAACAACTGCA+GGG | 0.556085 | 5_2:-56448094 | Msa0777480:three_prime_UTR |
| ACAAGTCACTCGACGGATGA+GGG | 0.558798 | 5_2:-56448240 | Msa0777480:CDS |
| CCGGCGCTTAAGAGTCTCAC+AGG | 0.559293 | 5_2:+56448386 | None:intergenic |
| CTTACCAGACAAAGCTGGGA+GGG | 0.559652 | 5_2:+56451707 | None:intergenic |
| CAACTGGTGAATGGAAGAAA+GGG | 0.559758 | 5_2:-56453115 | Msa0777480:CDS |
| TGTAGTGCCCTTATTTGAGA+AGG | 0.560033 | 5_2:-56450531 | Msa0777480:CDS |
| ATTGACTTCTGTTGTTACAC+AGG | 0.561453 | 5_2:-56450026 | Msa0777480:intron |
| TCCAATTGTCCCGCAGCACT+AGG | 0.562994 | 5_2:+56448183 | None:intergenic |
| TCCATCCAGTTTCATGACGG+TGG | 0.564496 | 5_2:+56451940 | None:intergenic |
| AATTGCAAGGACTGTATGCA+AGG | 0.565036 | 5_2:+56450200 | None:intergenic |
| ACTATACATCCACTGTGGAT+AGG | 0.566036 | 5_2:+56451791 | None:intergenic |
| GGAAAATAATAGACCAACAT+GGG | 0.566824 | 5_2:-56451256 | Msa0777480:CDS |
| AAGGATTACTGATCAAGAGC+TGG | 0.569540 | 5_2:-56450950 | Msa0777480:CDS |
| GCCAAACTCTGCAACAAATG+CGG | 0.571705 | 5_2:-56453068 | Msa0777480:CDS |
| TTACCAGACAAAGCTGGGAG+GGG | 0.575319 | 5_2:+56451708 | None:intergenic |
| ATCAGACCAGCTCGGTCCAA+AGG | 0.576061 | 5_2:-56449010 | Msa0777480:CDS |
| TCCTCCATCCAGTTTCATGA+CGG | 0.576172 | 5_2:+56451937 | None:intergenic |
| CACACGATACAAGTGCATCC+AGG | 0.576195 | 5_2:+56448462 | None:intergenic |
| TTTGGCCTAATAACAACAGT+AGG | 0.577022 | 5_2:-56450247 | Msa0777480:CDS |
| TTCCCCTTCACATCAGCAGG+TGG | 0.578031 | 5_2:+56451000 | None:intergenic |
| TTCGAGTACCTTGATTTCGG+TGG | 0.580235 | 5_2:-56451755 | Msa0777480:CDS |
| TAAGTGTCAATTCAACAAAG+AGG | 0.581056 | 5_2:-56451337 | Msa0777480:CDS |
| ACATCAGCAGGTGGCCGGCG+TGG | 0.583280 | 5_2:+56451009 | None:intergenic |
| CCTGTGAGACTCTTAAGCGC+CGG | 0.585911 | 5_2:-56448386 | Msa0777480:CDS |
| CATTTAGTCGGATAGATCCT+GGG | 0.586278 | 5_2:-56450078 | Msa0777480:CDS |
| GCTTAAAACTGCACATAGTG+AGG | 0.592237 | 5_2:-56449711 | Msa0777480:CDS |
| CCTAATGAGTTCAAATTCTG+AGG | 0.592495 | 5_2:+56449833 | None:intergenic |
| CTTTCACTAAAGATGGCTCT+AGG | 0.593793 | 5_2:-56451210 | Msa0777480:CDS |
| GGTTGTTGAGCCTAGTGCTG+CGG | 0.595679 | 5_2:-56448193 | Msa0777480:CDS |
| ATAGATGAAGCAGGTACTAG+TGG | 0.598221 | 5_2:-56448282 | Msa0777480:CDS |
| TATTGATGGTAGACTACTGG+TGG | 0.600333 | 5_2:-56451484 | Msa0777480:CDS |
| GGCCACCTGCTGATGTGAAG+GGG | 0.601780 | 5_2:-56451002 | Msa0777480:CDS |
| TGGTCGCAAGCTCAAAGAGA+TGG | 0.603653 | 5_2:-56451396 | Msa0777480:CDS |
| CAGGCAAGGCAAGTGCATGT+CGG | 0.603970 | 5_2:+56448405 | None:intergenic |
| ACATATTGATGGTAGACTAC+TGG | 0.604398 | 5_2:-56451487 | Msa0777480:CDS |
| TCCACCGTCATGAAACTGGA+TGG | 0.604497 | 5_2:-56451941 | Msa0777480:CDS |
| ATTGCAAGGACTGTATGCAA+GGG | 0.607548 | 5_2:+56450201 | None:intergenic |
| ATATTGGGACGAAAACTAAG+AGG | 0.609627 | 5_2:-56449625 | Msa0777480:CDS |
| AAGATATAATGGGGAACGAG+TGG | 0.614024 | 5_2:-56450286 | Msa0777480:CDS |
| GCAAGCTCAAAGAGATGGCA+TGG | 0.614907 | 5_2:-56451391 | Msa0777480:CDS |
| AGTAGGATGTATGTATTGGA+GGG | 0.615364 | 5_2:-56450230 | Msa0777480:CDS |
| GCTTAAGAGTCTCACAGGCA+AGG | 0.617723 | 5_2:+56448391 | None:intergenic |
| CCTAAATGGAGGTCAGCTTG+AGG | 0.620594 | 5_2:-56448214 | Msa0777480:CDS |
| TTGTGTAGAATTGGTGAAGT+CGG | 0.620883 | 5_2:-56451432 | Msa0777480:CDS |
| TACAGTTCCAAGATATAATG+GGG | 0.621280 | 5_2:-56450295 | Msa0777480:CDS |
| TTGGCCACTGAGATTGGAGA+AGG | 0.621905 | 5_2:-56451159 | Msa0777480:CDS |
| AAACCAGTGCCTCTCCATCA+GGG | 0.622368 | 5_2:-56449349 | Msa0777480:intron |
| TCTACATCTTCTCATTCTAA+CGG | 0.622522 | 5_2:-56449890 | Msa0777480:CDS |
| CAGCTGACGACGACTCGTCA+GGG | 0.628337 | 5_2:+56448514 | None:intergenic |
| TGATCTCTCATCCACCACGC+CGG | 0.630532 | 5_2:-56451023 | Msa0777480:CDS |
| ATAATCTTACCCTGATGGAG+AGG | 0.631070 | 5_2:+56449340 | None:intergenic |
| TCATATTAAAACAACTGCAG+GGG | 0.638836 | 5_2:-56448093 | Msa0777480:three_prime_UTR |
| GATGAAGCAGGTACTAGTGG+TGG | 0.639251 | 5_2:-56448279 | Msa0777480:CDS |
| ATTCAACCACCAAGTGGACA+GGG | 0.641900 | 5_2:-56448438 | Msa0777480:CDS |
| GGTTCTGCATCAGACCAGCT+CGG | 0.642711 | 5_2:-56449018 | Msa0777480:CDS |
| TGGAAAATAATAGACCAACA+TGG | 0.643513 | 5_2:-56451257 | Msa0777480:CDS |
| ACAAGATACAAGTCACTCGA+CGG | 0.645156 | 5_2:-56448247 | Msa0777480:CDS |
| CTGGTGAATGGAAGAAAGGG+TGG | 0.646177 | 5_2:-56453112 | Msa0777480:CDS |
| AAGTCGGTGAATCAAGCCGT+TGG | 0.649140 | 5_2:-56451416 | Msa0777480:CDS |
| TTTGGCTTGACACTAGGCGG+CGG | 0.654279 | 5_2:+56449533 | None:intergenic |
| GAATTGAAGAGATTAGGTAG+TGG | 0.654585 | 5_2:-56447983 | Msa0777480:three_prime_UTR |
| GTGTGCATTCAACCACCAAG+TGG | 0.657426 | 5_2:-56448444 | Msa0777480:CDS |
| TCTCCAATCTCAGTGGCCAA+CGG | 0.657815 | 5_2:+56451162 | None:intergenic |
| CCTTCTGATTGCAAAATACG+AGG | 0.659510 | 5_2:+56450326 | None:intergenic |
| TTGCAAGGACTGTATGCAAG+GGG | 0.665717 | 5_2:+56450202 | None:intergenic |
| ATATTTGGCTTGACACTAGG+CGG | 0.666538 | 5_2:+56449530 | None:intergenic |
| GTTAGAATGAGAAGATGTAG+AGG | 0.666828 | 5_2:+56449892 | None:intergenic |
| TAAAACTGCACATAGTGAGG+AGG | 0.667263 | 5_2:-56449708 | Msa0777480:CDS |
| GAAATGCAGCAATTGCAGCA+AGG | 0.667427 | 5_2:-56451916 | Msa0777480:intron |
| GATTGGAGAAGGTAAACTTG+AGG | 0.667659 | 5_2:-56451148 | Msa0777480:CDS |
| AAGAGCTGGAGAAATTGTCG+GGG | 0.668493 | 5_2:-56450936 | Msa0777480:CDS |
| TTAATCTTTCCGAAAACCGG+GGG | 0.672825 | 5_2:+56449371 | None:intergenic |
| ACCGTCATGAAACTGGATGG+AGG | 0.674066 | 5_2:-56451938 | Msa0777480:CDS |
| TTTAATCTTTCCGAAAACCG+GGG | 0.679300 | 5_2:+56449370 | None:intergenic |
| AGTGAGGAGGAAATGAACAA+TGG | 0.681817 | 5_2:-56449695 | Msa0777480:CDS |
| TATGGAATTGAGACTTACAT+GGG | 0.685466 | 5_2:-56449579 | Msa0777480:CDS |
| AAGCTGGGAGGGGTTAACAC+AGG | 0.689577 | 5_2:+56451718 | None:intergenic |
| GAATCACCACAAAACATCCG+AGG | 0.699635 | 5_2:-56448491 | Msa0777480:CDS |
| TTTACCTTCTCCAATCTCAG+TGG | 0.700030 | 5_2:+56451155 | None:intergenic |
| TCAATCAATGAAAGGTAACG+GGG | 0.707345 | 5_2:-56449792 | Msa0777480:CDS |
| GATGAGGGAAGCCTAAATGG+AGG | 0.710836 | 5_2:-56448225 | Msa0777480:CDS |
| CCTTACCAGACAAAGCTGGG+AGG | 0.719494 | 5_2:+56451706 | None:intergenic |
| AGAGCTGGAGAAATTGTCGG+GGG | 0.721199 | 5_2:-56450935 | Msa0777480:CDS |
| GCTCCCAAAAGCGTGTGCTG+AGG | 0.736724 | 5_2:-56450468 | Msa0777480:intron |
| TTGATACTATACATCCACTG+TGG | 0.738079 | 5_2:+56451786 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATTTCAATATCAA+AGG | + | chr5_2:56449431-56449450 | None:intergenic | 10.0% |
| !!! | TACATATATCTAAATATTTT+TGG | - | chr5_2:56452439-56452458 | Msa0777480:intron | 10.0% |
| !!! | ACATATATCTAAATATTTTT+GGG | - | chr5_2:56452440-56452459 | Msa0777480:intron | 10.0% |
| !!! | ATTTCACAATGTTATAATTT+TGG | - | chr5_2:56448279-56448298 | Msa0777480:CDS | 15.0% |
| !!! | TTTCACAATGTTATAATTTT+GGG | - | chr5_2:56448280-56448299 | Msa0777480:CDS | 15.0% |
| !!! | TTGATCCAAATTAATAATTT+TGG | - | chr5_2:56448326-56448345 | Msa0777480:CDS | 15.0% |
| !!! | TGATCCAAATTAATAATTTT+GGG | - | chr5_2:56448327-56448346 | Msa0777480:CDS | 15.0% |
| !! | AAATCCCAAAATTATTAATT+TGG | + | chr5_2:56448334-56448353 | None:intergenic | 15.0% |
| !! | TCTTAAATATAAGTAAAAGT+TGG | + | chr5_2:56448669-56448688 | None:intergenic | 15.0% |
| !!! | ACTTTTACTTATATTTAAGA+CGG | - | chr5_2:56448669-56448688 | Msa0777480:intron | 15.0% |
| !!! | CAATTTTTTTTTAGAAAACT+CGG | + | chr5_2:56448989-56449008 | None:intergenic | 15.0% |
| !! | AGAATCAAATAACAAAATTT+CGG | + | chr5_2:56449620-56449639 | None:intergenic | 15.0% |
| !!! | AATGATATATTTTGGATTTT+TGG | - | chr5_2:56451809-56451828 | Msa0777480:intron | 15.0% |
| !!! | GTTTTTTATTTGTTTCATTT+AGG | - | chr5_2:56451866-56451885 | Msa0777480:intron | 15.0% |
| !!! | TATGATTAATTTGATTGTTT+TGG | + | chr5_2:56452961-56452980 | None:intergenic | 15.0% |
| !!! | TTTTACTTCATTTTTCATTT+TGG | - | chr5_2:56453251-56453270 | Msa0777480:five_prime_UTR | 15.0% |
| !!! | TTTTTATTTTCTTGTTGTAG+TGG | - | chr5_2:56447951-56447970 | Msa0777480:three_prime_UTR | 20.0% |
| !!! | TTTTATTTTCTTGTTGTAGT+GGG | - | chr5_2:56447952-56447971 | Msa0777480:three_prime_UTR | 20.0% |
| !! | GTGTATGAATAATTATTGTA+AGG | - | chr5_2:56448118-56448137 | Msa0777480:CDS | 20.0% |
| !! | ATGAATAATTATTGTAAGGA+AGG | - | chr5_2:56448122-56448141 | Msa0777480:CDS | 20.0% |
| !!! | TTCACAATGTTATAATTTTG+GGG | - | chr5_2:56448281-56448300 | Msa0777480:CDS | 20.0% |
| !!! | ATTAATAATTTTGGGATTTG+AGG | - | chr5_2:56448335-56448354 | Msa0777480:CDS | 20.0% |
| !! | AATACAACTTTAAATATGAG+TGG | + | chr5_2:56448504-56448523 | None:intergenic | 20.0% |
| !! | AAATCAAAATATGAAATGCT+CGG | - | chr5_2:56448533-56448552 | Msa0777480:CDS | 20.0% |
| !!! | CTTTTACTTATATTTAAGAC+GGG | - | chr5_2:56448670-56448689 | Msa0777480:intron | 20.0% |
| !!! | CGAGTTTTCTAAAAAAAAAT+TGG | - | chr5_2:56448987-56449006 | Msa0777480:CDS | 20.0% |
| !! | TTCAAATCAAACATATGTTT+AGG | - | chr5_2:56449156-56449175 | Msa0777480:intron | 20.0% |
| !! | GAATCAAATAACAAAATTTC+GGG | + | chr5_2:56449619-56449638 | None:intergenic | 20.0% |
| !!! | TATCATTGAATGTTTTTCTA+TGG | - | chr5_2:56449681-56449700 | Msa0777480:CDS | 20.0% |
| !! | ATAATAGACCAAAATACTAA+GGG | + | chr5_2:56450646-56450665 | None:intergenic | 20.0% |
| !! | AATAATAGACCAAAATACTA+AGG | + | chr5_2:56450647-56450666 | None:intergenic | 20.0% |
| !! | AACTGAGATAATAATGTTAA+GGG | + | chr5_2:56450701-56450720 | None:intergenic | 20.0% |
| !! | AAACTGAGATAATAATGTTA+AGG | + | chr5_2:56450702-56450721 | None:intergenic | 20.0% |
| !!! | AATTTCTATTTGGTTTTAGA+AGG | - | chr5_2:56451211-56451230 | Msa0777480:CDS | 20.0% |
| !!! | AAACTGTGAATGATATATTT+TGG | - | chr5_2:56451801-56451820 | Msa0777480:intron | 20.0% |
| !! | ATTATTCTTATTATGTACCA+TGG | - | chr5_2:56452206-56452225 | Msa0777480:intron | 20.0% |
| !! | TAAATAAAAAAAACGATAGC+AGG | + | chr5_2:56452315-56452334 | None:intergenic | 20.0% |
| !! | TAATTAAGTACTAGTTATCA+AGG | + | chr5_2:56452579-56452598 | None:intergenic | 20.0% |
| !! | GTTAAGGAGAAATATAAAAT+TGG | + | chr5_2:56453309-56453328 | None:intergenic | 20.0% |
| !!! | TTTTTGGGTTTTGATTTCTA+GGG | - | chr5_2:56448029-56448048 | Msa0777480:three_prime_UTR | 25.0% |
| !!! | AGAGGGATTGATTTTATTTT+GGG | - | chr5_2:56448072-56448091 | Msa0777480:three_prime_UTR | 25.0% |
| !!! | TTATTTTGGGTTTTGTTCAA+TGG | - | chr5_2:56448085-56448104 | Msa0777480:three_prime_UTR | 25.0% |
| !!! | TATTTTGGGTTTTGTTCAAT+GGG | - | chr5_2:56448086-56448105 | Msa0777480:three_prime_UTR | 25.0% |
| !!! | CTTTTGCTTATATTTAAGAC+CGG | + | chr5_2:56448599-56448618 | None:intergenic | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr5_2:56448646-56448665 | None:intergenic | 25.0% |
| ! | ACATTAAGATAATCATTTGC+AGG | + | chr5_2:56448771-56448790 | None:intergenic | 25.0% |
| ! | GAATCTGTAAATTTATGTGT+CGG | + | chr5_2:56449657-56449676 | None:intergenic | 25.0% |
| ! | AGGATACTGAAAATCATAAT+AGG | - | chr5_2:56449708-56449727 | Msa0777480:CDS | 25.0% |
| ! | TTTATTTGTTTCAAGACTCA+TGG | + | chr5_2:56450215-56450234 | None:intergenic | 25.0% |
| ! | ATGAGTCTTGAAACAAATAA+AGG | - | chr5_2:56450214-56450233 | Msa0777480:CDS | 25.0% |
| ! | CAAACAGAACCTAAATATAA+AGG | + | chr5_2:56450358-56450377 | None:intergenic | 25.0% |
| !! | CTTTATATTTAGGTTCTGTT+TGG | - | chr5_2:56450356-56450375 | Msa0777480:intron | 25.0% |
| ! | ATTATATCTTGGAACTGTAA+AGG | + | chr5_2:56450966-56450985 | None:intergenic | 25.0% |
| ! | TTTACAGTTCCAAGATATAA+TGG | - | chr5_2:56450965-56450984 | Msa0777480:CDS | 25.0% |
| ! | TTACAGTTCCAAGATATAAT+GGG | - | chr5_2:56450966-56450985 | Msa0777480:CDS | 25.0% |
| ! | TTGTTACAGTAACATTTAGT+CGG | - | chr5_2:56451172-56451191 | Msa0777480:CDS | 25.0% |
| ! | TTAAAGGGTTATCTTTAAAC+AGG | - | chr5_2:56451344-56451363 | Msa0777480:CDS | 25.0% |
| ! | AATCTTCTTCAATCAATGAA+AGG | - | chr5_2:56451462-56451481 | Msa0777480:CDS | 25.0% |
| ! | TCCTCAATTGTTACAATATT+TGG | + | chr5_2:56451750-56451769 | None:intergenic | 25.0% |
| ! | CATCATATTCTTCAAATACT+TGG | + | chr5_2:56451773-56451792 | None:intergenic | 25.0% |
| ! | ACAAATAAAAAACATAAGCC+AGG | + | chr5_2:56451859-56451878 | None:intergenic | 25.0% |
| ! | CTATCATTGTACATATTTGA+AGG | + | chr5_2:56452003-56452022 | None:intergenic | 25.0% |
| ! | TTAGTCCTATTTCAAATGTT+TGG | - | chr5_2:56452118-56452137 | Msa0777480:intron | 25.0% |
| ! | TAGTCCTATTTCAAATGTTT+GGG | - | chr5_2:56452119-56452138 | Msa0777480:intron | 25.0% |
| ! | ATTAATCATATAGATGAAGC+AGG | - | chr5_2:56452971-56452990 | Msa0777480:intron | 25.0% |
| !!! | TACTTCATTTTTCATTTTGG+AGG | - | chr5_2:56453254-56453273 | Msa0777480:five_prime_UTR | 25.0% |
| TGAATCTTGAATCTTGAAAC+TGG | - | chr5_2:56447909-56447928 | Msa0777480:three_prime_UTR | 30.0% | |
| TGATTTCAACACTAACATTG+AGG | - | chr5_2:56448006-56448025 | Msa0777480:three_prime_UTR | 30.0% | |
| ! | AACACTAACATTGAGGTTTT+TGG | - | chr5_2:56448013-56448032 | Msa0777480:three_prime_UTR | 30.0% |
| ! | ACACTAACATTGAGGTTTTT+GGG | - | chr5_2:56448014-56448033 | Msa0777480:three_prime_UTR | 30.0% |
| !!! | GTTTTTGGGTTTTGATTTCT+AGG | - | chr5_2:56448028-56448047 | Msa0777480:three_prime_UTR | 30.0% |
| !! | GAGAGGGATTGATTTTATTT+TGG | - | chr5_2:56448071-56448090 | Msa0777480:three_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTTTGTTCAATG+GGG | - | chr5_2:56448087-56448106 | Msa0777480:three_prime_UTR | 30.0% |
| TGTTCTTATGAGTTCATGTT+GGG | - | chr5_2:56448368-56448387 | Msa0777480:CDS | 30.0% | |
| ! | TTTCAACCCTTTTTCTTTTC+TGG | - | chr5_2:56448402-56448421 | Msa0777480:CDS | 30.0% |
| ! | TTCAACCCTTTTTCTTTTCT+GGG | - | chr5_2:56448403-56448422 | Msa0777480:CDS | 30.0% |
| AAAACCCCAGAAAAGAAAAA+GGG | + | chr5_2:56448411-56448430 | None:intergenic | 30.0% | |
| ! | TGATCATCATTTTCATCCAA+AGG | + | chr5_2:56448479-56448498 | None:intergenic | 30.0% |
| AAATGTAGACTGAACAGAAA+GGG | + | chr5_2:56448722-56448741 | None:intergenic | 30.0% | |
| AAGTCCATGTTGCAATTTAT+AGG | - | chr5_2:56449111-56449130 | Msa0777480:intron | 30.0% | |
| AGTCCATGTTGCAATTTATA+GGG | - | chr5_2:56449112-56449131 | Msa0777480:intron | 30.0% | |
| TTACCCTATAAATTGCAACA+TGG | + | chr5_2:56449118-56449137 | None:intergenic | 30.0% | |
| AAATTAAGAATCCGTAAGCA+GGG | + | chr5_2:56449247-56449266 | None:intergenic | 30.0% | |
| TAAATTAAGAATCCGTAAGC+AGG | + | chr5_2:56449248-56449267 | None:intergenic | 30.0% | |
| ACAGAAAAGTGAATTCTCAT+AGG | + | chr5_2:56449294-56449313 | None:intergenic | 30.0% | |
| ! | GAATGTTTTTCTATGGATAC+AGG | - | chr5_2:56449688-56449707 | Msa0777480:CDS | 30.0% |
| GAATTGACACTTAACTTCTT+CGG | + | chr5_2:56449918-56449937 | None:intergenic | 30.0% | |
| TAAGTGTCAATTCAACAAAG+AGG | - | chr5_2:56449925-56449944 | Msa0777480:intron | 30.0% | |
| AATGCAGTAAATGCTGTTAA+AGG | + | chr5_2:56449986-56450005 | None:intergenic | 30.0% | |
| TTTAACAGCATTTACTGCAT+TGG | - | chr5_2:56449985-56450004 | Msa0777480:intron | 30.0% | |
| TGGAAAATAATAGACCAACA+TGG | - | chr5_2:56450005-56450024 | Msa0777480:intron | 30.0% | |
| GGAAAATAATAGACCAACAT+GGG | - | chr5_2:56450006-56450025 | Msa0777480:intron | 30.0% | |
| ! | CATCTTCTCATTTTCAACAA+GGG | - | chr5_2:56450143-56450162 | Msa0777480:intron | 30.0% |
| CTTATTTCGATAAGTTCTCT+AGG | + | chr5_2:56450515-56450534 | None:intergenic | 30.0% | |
| AGTTTATCGAAACAGCTTAA+CGG | + | chr5_2:56450560-56450579 | None:intergenic | 30.0% | |
| CTTAACACCTTCTCAAATAA+GGG | + | chr5_2:56450741-56450760 | None:intergenic | 30.0% | |
| ACTTAACACCTTCTCAAATA+AGG | + | chr5_2:56450742-56450761 | None:intergenic | 30.0% | |
| CAAATTGGTATACGAATTTC+AGG | - | chr5_2:56450905-56450924 | Msa0777480:intron | 30.0% | |
| TACAGTTCCAAGATATAATG+GGG | - | chr5_2:56450967-56450986 | Msa0777480:CDS | 30.0% | |
| ! | TACATCCTACTGTTGTTATT+AGG | + | chr5_2:56451023-56451042 | None:intergenic | 30.0% |
| !!! | CCAAATAGAAATTTTTTCCC+AGG | + | chr5_2:56451204-56451223 | None:intergenic | 30.0% |
| CCTGGGAAAAAATTTCTATT+TGG | - | chr5_2:56451201-56451220 | Msa0777480:CDS | 30.0% | |
| TCTACATCTTCTCATTCTAA+CGG | - | chr5_2:56451372-56451391 | Msa0777480:CDS | 30.0% | |
| ! | ATAAAGGATCCAAACTTTTC+TGG | - | chr5_2:56451402-56451421 | Msa0777480:CDS | 30.0% |
| CTTCAATCAATGAAAGGTAA+CGG | - | chr5_2:56451468-56451487 | Msa0777480:CDS | 30.0% | |
| TTCAATCAATGAAAGGTAAC+GGG | - | chr5_2:56451469-56451488 | Msa0777480:CDS | 30.0% | |
| TCTGAATGTCCATTTAAGTA+AGG | + | chr5_2:56451498-56451517 | None:intergenic | 30.0% | |
| TATGGAATTGAGACTTACAT+GGG | - | chr5_2:56451683-56451702 | Msa0777480:intron | 30.0% | |
| GCCAAATATTGTAACAATTG+AGG | - | chr5_2:56451746-56451765 | Msa0777480:CDS | 30.0% | |
| ATCTTCAAATTTCTGTTACC+TGG | - | chr5_2:56451838-56451857 | Msa0777480:intron | 30.0% | |
| ! | TTTTAATCTTTCCGAAAACC+GGG | + | chr5_2:56451896-56451915 | None:intergenic | 30.0% |
| !! | GTTTTAATCTTTCCGAAAAC+CGG | + | chr5_2:56451897-56451916 | None:intergenic | 30.0% |
| ! | ATTATGTACCATGGTTTTTC+AGG | - | chr5_2:56452215-56452234 | Msa0777480:intron | 30.0% |
| AGTCTTCAAAGAACCAAAAA+AGG | - | chr5_2:56452283-56452302 | Msa0777480:intron | 30.0% | |
| TCTGTAGTAGTCATGTTTAT+CGG | - | chr5_2:56452342-56452361 | Msa0777480:intron | 30.0% | |
| !!! | CTAAATATTTTTGGGATGTG+TGG | - | chr5_2:56452448-56452467 | Msa0777480:intron | 30.0% |
| !! | AGTGCTTTGGAAATAACTTT+AGG | + | chr5_2:56452548-56452567 | None:intergenic | 30.0% |
| TGGAAACTGATACATATAAC+AGG | - | chr5_2:56453131-56453150 | Msa0777480:CDS | 30.0% | |
| ! | TAATATGACTAGTCATGCTT+TGG | + | chr5_2:56453157-56453176 | None:intergenic | 30.0% |
| AGTCATATTAAAACAACTGC+AGG | - | chr5_2:56453167-56453186 | Msa0777480:exon | 30.0% | |
| GTCATATTAAAACAACTGCA+GGG | - | chr5_2:56453168-56453187 | Msa0777480:exon | 30.0% | |
| TCATATTAAAACAACTGCAG+GGG | - | chr5_2:56453169-56453188 | Msa0777480:exon | 30.0% | |
| ! | GGTTTACTTTCCTTTTCAAA+AGG | - | chr5_2:56453343-56453362 | Msa0777480:five_prime_UTR | 30.0% |
| ! | ACTTTCCTTTTCAAAAGGAA+TGG | - | chr5_2:56453348-56453367 | Msa0777480:five_prime_UTR | 30.0% |
| !! | CTTTACCATTCCTTTTGAAA+AGG | + | chr5_2:56453356-56453375 | None:intergenic | 30.0% |
| TTCAAAAGGAATGGTAAAGA+TGG | - | chr5_2:56453357-56453376 | Msa0777480:five_prime_UTR | 30.0% | |
| !!! | GATTTCTAGGGTTTTGACTT+TGG | - | chr5_2:56448041-56448060 | Msa0777480:three_prime_UTR | 35.0% |
| !!! | TAGGGTTTTGACTTTGGATT+GGG | - | chr5_2:56448047-56448066 | Msa0777480:three_prime_UTR | 35.0% |
| !!! | TTTTGGGTTTTGTTCAATGG+GGG | - | chr5_2:56448088-56448107 | Msa0777480:three_prime_UTR | 35.0% |
| TATTGTAAGGAAGGTTCAAC+TGG | - | chr5_2:56448131-56448150 | Msa0777480:CDS | 35.0% | |
| GTGTTCTTATGAGTTCATGT+TGG | - | chr5_2:56448367-56448386 | Msa0777480:CDS | 35.0% | |
| ! | TCAACCCTTTTTCTTTTCTG+GGG | - | chr5_2:56448404-56448423 | Msa0777480:CDS | 35.0% |
| GAAAACCCCAGAAAAGAAAA+AGG | + | chr5_2:56448412-56448431 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTCTGGGGTTTTC+AGG | - | chr5_2:56448412-56448431 | Msa0777480:CDS | 35.0% |
| !!! | TTTCTTTTCTGGGGTTTTCA+GGG | - | chr5_2:56448413-56448432 | Msa0777480:CDS | 35.0% |
| GGGTACATTACTTAAACTGA+TGG | + | chr5_2:56448702-56448721 | None:intergenic | 35.0% | |
| CAAATGTAGACTGAACAGAA+AGG | + | chr5_2:56448723-56448742 | None:intergenic | 35.0% | |
| TATCTTAATGTGTACCCACT+TGG | - | chr5_2:56448780-56448799 | Msa0777480:intron | 35.0% | |
| AGTCTTGCTCTGACTTTAAA+TGG | - | chr5_2:56448903-56448922 | Msa0777480:intron | 35.0% | |
| GTCTTGCTCTGACTTTAAAT+GGG | - | chr5_2:56448904-56448923 | Msa0777480:intron | 35.0% | |
| !!! | CTTGGTTTTGTTAGTAAGTC+AGG | - | chr5_2:56449076-56449095 | Msa0777480:intron | 35.0% |
| AATTAAGAATCCGTAAGCAG+GGG | + | chr5_2:56449246-56449265 | None:intergenic | 35.0% | |
| TATCAAAGGAGAGAAAGACA+AGG | + | chr5_2:56449417-56449436 | None:intergenic | 35.0% | |
| TTGATACTATACATCCACTG+TGG | + | chr5_2:56449479-56449498 | None:intergenic | 35.0% | |
| AACTTATACCACCGAAATCA+AGG | + | chr5_2:56449518-56449537 | None:intergenic | 35.0% | |
| ! | TTTATGTGTCGGTATCACAA+TGG | + | chr5_2:56449646-56449665 | None:intergenic | 35.0% |
| !!! | CATTGTTTTTGGTCGATTGA+GGG | + | chr5_2:56449736-56449755 | None:intergenic | 35.0% |
| ! | TCGATCACTTGCATTGTTTT+TGG | + | chr5_2:56449747-56449766 | None:intergenic | 35.0% |
| AACAATGCAAGTGATCGATA+TGG | - | chr5_2:56449749-56449768 | Msa0777480:CDS | 35.0% | |
| CGATATGGTGAACATATTGA+TGG | - | chr5_2:56449764-56449783 | Msa0777480:CDS | 35.0% | |
| ! | ACATATTGATGGTAGACTAC+TGG | - | chr5_2:56449775-56449794 | Msa0777480:CDS | 35.0% |
| CAATTCTACACAACTGCATA+AGG | + | chr5_2:56449823-56449842 | None:intergenic | 35.0% | |
| CTTATGCAGTTGTGTAGAAT+TGG | - | chr5_2:56449821-56449840 | Msa0777480:CDS | 35.0% | |
| TTGTGTAGAATTGGTGAAGT+CGG | - | chr5_2:56449830-56449849 | Msa0777480:CDS | 35.0% | |
| ! | ATACTTTTAGTCTCCCATGT+TGG | + | chr5_2:56450022-56450041 | None:intergenic | 35.0% |
| TGAAACGCTTTCACTAAAGA+TGG | - | chr5_2:56450045-56450064 | Msa0777480:CDS | 35.0% | |
| ATTGGAGAAGGTAAACTTGA+GGG | - | chr5_2:56450115-56450134 | Msa0777480:intron | 35.0% | |
| ! | GCATCTTCTCATTTTCAACA+AGG | - | chr5_2:56450142-56450161 | Msa0777480:intron | 35.0% |
| GCAAACATCTCAGTCTATAT+TGG | - | chr5_2:56450165-56450184 | Msa0777480:intron | 35.0% | |
| ! | ATCAGTTACTTTCTCGATAC+TGG | - | chr5_2:56450287-56450306 | Msa0777480:CDS | 35.0% |
| !! | GGGGAGTATCCTTTATATTT+AGG | - | chr5_2:56450346-56450365 | Msa0777480:intron | 35.0% |
| AATAAGCTGAAAACAACTCG+TGG | - | chr5_2:56450529-56450548 | Msa0777480:CDS | 35.0% | |
| ! | CAAAATACTAAGGGCTTGTT+AGG | + | chr5_2:56450637-56450656 | None:intergenic | 35.0% |
| ! | CTAACAAGCCCTTAGTATTT+TGG | - | chr5_2:56450635-56450654 | Msa0777480:intron | 35.0% |
| TACACATTTCCCTGTAATTG+CGG | - | chr5_2:56450873-56450892 | Msa0777480:intron | 35.0% | |
| ! | GGACTTTTCAGTTCAGATTT+TGG | - | chr5_2:56450997-56451016 | Msa0777480:CDS | 35.0% |
| TTTGGCCTAATAACAACAGT+AGG | - | chr5_2:56451015-56451034 | Msa0777480:CDS | 35.0% | |
| CAACAGTAGGATGTATGTAT+TGG | - | chr5_2:56451028-56451047 | Msa0777480:CDS | 35.0% | |
| AGTAGGATGTATGTATTGGA+GGG | - | chr5_2:56451032-56451051 | Msa0777480:CDS | 35.0% | |
| ATCACCAGCATTTAATTGCA+AGG | + | chr5_2:56451078-56451097 | None:intergenic | 35.0% | |
| CAATTAAATGCTGGTGATAC+TGG | - | chr5_2:56451080-56451099 | Msa0777480:CDS | 35.0% | |
| ! | ATTGACTTCTGTTGTTACAC+AGG | - | chr5_2:56451236-56451255 | Msa0777480:CDS | 35.0% |
| GTTAGAATGAGAAGATGTAG+AGG | + | chr5_2:56451373-56451392 | None:intergenic | 35.0% | |
| TTCTAACGGCATTTCGATAA+AGG | - | chr5_2:56451386-56451405 | Msa0777480:CDS | 35.0% | |
| CCTAATGAGTTCAAATTCTG+AGG | + | chr5_2:56451432-56451451 | None:intergenic | 35.0% | |
| CCTCAGAATTTGAACTCATT+AGG | - | chr5_2:56451429-56451448 | Msa0777480:CDS | 35.0% | |
| TCAATCAATGAAAGGTAACG+GGG | - | chr5_2:56451470-56451489 | Msa0777480:CDS | 35.0% | |
| TTTCAGTTTCAGAGAAGAAG+AGG | - | chr5_2:56451607-56451626 | Msa0777480:intron | 35.0% | |
| ATATTGGGACGAAAACTAAG+AGG | - | chr5_2:56451637-56451656 | Msa0777480:intron | 35.0% | |
| CTATGGAATTGAGACTTACA+TGG | - | chr5_2:56451682-56451701 | Msa0777480:intron | 35.0% | |
| !! | ACAATATTTGGCTTGACACT+AGG | + | chr5_2:56451738-56451757 | None:intergenic | 35.0% |
| TTTAATCTTTCCGAAAACCG+GGG | + | chr5_2:56451895-56451914 | None:intergenic | 35.0% | |
| GGTATATAATCTTACCCTGA+TGG | + | chr5_2:56451930-56451949 | None:intergenic | 35.0% | |
| ! | GCATCCCAAACATTTGAAAT+AGG | + | chr5_2:56452126-56452145 | None:intergenic | 35.0% |
| TGAAGACTTTCTTGTTCCTT+TGG | + | chr5_2:56452271-56452290 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGATGTGTGGAT+TGG | - | chr5_2:56452453-56452472 | Msa0777480:intron | 35.0% |
| AGCAAGCACAGAATTTAACA+CGG | + | chr5_2:56452497-56452516 | None:intergenic | 35.0% | |
| !!! | TCGCTTCTTTTTAGAATCTG+CGG | + | chr5_2:56452633-56452652 | None:intergenic | 35.0% |
| ATTCAAGAACACAAGCTTTC+AGG | - | chr5_2:56452677-56452696 | Msa0777480:intron | 35.0% | |
| ! | TTTTCTTCTTACGCATCGTA+AGG | + | chr5_2:56452910-56452929 | None:intergenic | 35.0% |
| CAACTGCTTCAGATTCTAAT+TGG | + | chr5_2:56452934-56452953 | None:intergenic | 35.0% | |
| GTTTCCATTTCTTCATGACT+GGG | + | chr5_2:56453118-56453137 | None:intergenic | 35.0% | |
| AGTTTCCATTTCTTCATGAC+TGG | + | chr5_2:56453119-56453138 | None:intergenic | 35.0% | |
| GAATTGAAGAGATTAGGTAG+TGG | - | chr5_2:56453279-56453298 | Msa0777480:five_prime_UTR | 35.0% | |
| !!! | CTAGGGTTTTGACTTTGGAT+TGG | - | chr5_2:56448046-56448065 | Msa0777480:three_prime_UTR | 40.0% |
| TCAACTGGTGAATGGAAGAA+AGG | - | chr5_2:56448146-56448165 | Msa0777480:CDS | 40.0% | |
| CAACTGGTGAATGGAAGAAA+GGG | - | chr5_2:56448147-56448166 | Msa0777480:CDS | 40.0% | |
| ACGCATAAATGCACAGTTAC+AGG | + | chr5_2:56448443-56448462 | None:intergenic | 40.0% | |
| TGTCAACGAATCTCAGTTCT+TGG | + | chr5_2:56448566-56448585 | None:intergenic | 40.0% | |
| TTAATGTGTACCCACTTGGT+TGG | - | chr5_2:56448784-56448803 | Msa0777480:intron | 40.0% | |
| CTTACTTTGTGCTCCTCTAA+AGG | - | chr5_2:56448829-56448848 | Msa0777480:intron | 40.0% | |
| ! | ATTCCCTCTGATGCCAATTT+TGG | - | chr5_2:56448863-56448882 | Msa0777480:intron | 40.0% |
| AGTCAGAGCAAGACTTTGTA+TGG | + | chr5_2:56448898-56448917 | None:intergenic | 40.0% | |
| !! | CTTTACCTGCTTTTGTTCTG+AGG | - | chr5_2:56449050-56449069 | Msa0777480:intron | 40.0% |
| AGAAACCTCAGAACAAAAGC+AGG | + | chr5_2:56449058-56449077 | None:intergenic | 40.0% | |
| !!! | GCTTTTGTTCTGAGGTTTCT+TGG | - | chr5_2:56449058-56449077 | Msa0777480:intron | 40.0% |
| AAATTCCACCGTCATGAAAC+TGG | - | chr5_2:56449317-56449336 | Msa0777480:intron | 40.0% | |
| ACTATACATCCACTGTGGAT+AGG | + | chr5_2:56449474-56449493 | None:intergenic | 40.0% | |
| TCGTTCGAGTACCTTGATTT+CGG | - | chr5_2:56449504-56449523 | Msa0777480:CDS | 40.0% | |
| TAACCTTACCAGACAAAGCT+GGG | + | chr5_2:56449562-56449581 | None:intergenic | 40.0% | |
| TTAACCTTACCAGACAAAGC+TGG | + | chr5_2:56449563-56449582 | None:intergenic | 40.0% | |
| !!! | GCATTGTTTTTGGTCGATTG+AGG | + | chr5_2:56449737-56449756 | None:intergenic | 40.0% |
| ! | TATTGATGGTAGACTACTGG+TGG | - | chr5_2:56449778-56449797 | Msa0777480:CDS | 40.0% |
| GATGGCATGGTTTCATGTAT+TGG | - | chr5_2:56449884-56449903 | Msa0777480:CDS | 40.0% | |
| CACTTAACTTCTTCGGTCTT+TGG | + | chr5_2:56449911-56449930 | None:intergenic | 40.0% | |
| CTTTCACTAAAGATGGCTCT+AGG | - | chr5_2:56450052-56450071 | Msa0777480:CDS | 40.0% | |
| AAGAAATTCTGTTCTGCCGT+TGG | - | chr5_2:56450084-56450103 | Msa0777480:CDS | 40.0% | |
| TTTACCTTCTCCAATCTCAG+TGG | + | chr5_2:56450110-56450129 | None:intergenic | 40.0% | |
| GATTGGAGAAGGTAAACTTG+AGG | - | chr5_2:56450114-56450133 | Msa0777480:intron | 40.0% | |
| TTGGCTCAACTATCAAAGAC+TGG | - | chr5_2:56450184-56450203 | Msa0777480:CDS | 40.0% | |
| AGCTCTTGATCAGTAATCCT+TGG | + | chr5_2:56450313-56450332 | None:intergenic | 40.0% | |
| AAGGATTACTGATCAAGAGC+TGG | - | chr5_2:56450312-56450331 | Msa0777480:CDS | 40.0% | |
| TCAAGAGCTGGAGAAATTGT+CGG | - | chr5_2:56450324-56450343 | Msa0777480:CDS | 40.0% | |
| ! | TGTAGTGCCCTTATTTGAGA+AGG | - | chr5_2:56450731-56450750 | Msa0777480:intron | 40.0% |
| TCATACATGCCGCAATTACA+GGG | + | chr5_2:56450885-56450904 | None:intergenic | 40.0% | |
| TTGCGGCATGTATGACAAAT+TGG | - | chr5_2:56450890-56450909 | Msa0777480:intron | 40.0% | |
| CCTTCTGATTGCAAAATACG+AGG | + | chr5_2:56450939-56450958 | None:intergenic | 40.0% | |
| ! | CCTCGTATTTTGCAATCAGA+AGG | - | chr5_2:56450936-56450955 | Msa0777480:CDS | 40.0% |
| ACTCGTTCCCCATTATATCT+TGG | + | chr5_2:56450977-56450996 | None:intergenic | 40.0% | |
| ! | AAGATATAATGGGGAACGAG+TGG | - | chr5_2:56450976-56450995 | Msa0777480:CDS | 40.0% |
| CAGTAGGATGTATGTATTGG+AGG | - | chr5_2:56451031-56451050 | Msa0777480:CDS | 40.0% | |
| ATTGCAAGGACTGTATGCAA+GGG | + | chr5_2:56451064-56451083 | None:intergenic | 40.0% | |
| AATTGCAAGGACTGTATGCA+AGG | + | chr5_2:56451065-56451084 | None:intergenic | 40.0% | |
| CAGTCCTTGCAATTAAATGC+TGG | - | chr5_2:56451071-56451090 | Msa0777480:CDS | 40.0% | |
| ACATTTAGTCGGATAGATCC+TGG | - | chr5_2:56451183-56451202 | Msa0777480:CDS | 40.0% | |
| CATTTAGTCGGATAGATCCT+GGG | - | chr5_2:56451184-56451203 | Msa0777480:CDS | 40.0% | |
| AACGGGGAACCTTACTTAAA+TGG | - | chr5_2:56451486-56451505 | Msa0777480:CDS | 40.0% | |
| ACATTCAGAACATCTGCGTT+TGG | - | chr5_2:56451509-56451528 | Msa0777480:CDS | 40.0% | |
| CATTCAGAACATCTGCGTTT+GGG | - | chr5_2:56451510-56451529 | Msa0777480:CDS | 40.0% | |
| GCTTAAAACTGCACATAGTG+AGG | - | chr5_2:56451551-56451570 | Msa0777480:CDS | 40.0% | |
| TAAAACTGCACATAGTGAGG+AGG | - | chr5_2:56451554-56451573 | Msa0777480:CDS | 40.0% | |
| AGTGAGGAGGAAATGAACAA+TGG | - | chr5_2:56451567-56451586 | Msa0777480:intron | 40.0% | |
| AAGAAGAGGTCTCGCAATAT+TGG | - | chr5_2:56451621-56451640 | Msa0777480:intron | 40.0% | |
| AGAAGAGGTCTCGCAATATT+GGG | - | chr5_2:56451622-56451641 | Msa0777480:intron | 40.0% | |
| CATTCATAGCGAAGATGCTA+TGG | - | chr5_2:56451665-56451684 | Msa0777480:intron | 40.0% | |
| !! | ATATTTGGCTTGACACTAGG+CGG | + | chr5_2:56451735-56451754 | None:intergenic | 40.0% |
| TTGTTTCATTTAGGAACCCC+CGG | - | chr5_2:56451875-56451894 | Msa0777480:intron | 40.0% | |
| TTAATCTTTCCGAAAACCGG+GGG | + | chr5_2:56451894-56451913 | None:intergenic | 40.0% | |
| ATAATCTTACCCTGATGGAG+AGG | + | chr5_2:56451925-56451944 | None:intergenic | 40.0% | |
| ! | CTGATAGTGCTAAATGTGCA+AGG | + | chr5_2:56451951-56451970 | None:intergenic | 40.0% |
| GCAGACAGGTCAACATTATT+CGG | - | chr5_2:56452144-56452163 | Msa0777480:intron | 40.0% | |
| !!! | TAGCAGGATCGTACCTTTTT+TGG | + | chr5_2:56452299-56452318 | None:intergenic | 40.0% |
| GTTTATCGGAACAGAGTTAG+AGG | - | chr5_2:56452356-56452375 | Msa0777480:intron | 40.0% | |
| ATTGCCTAAAACTGCTGCAT+TGG | + | chr5_2:56452717-56452736 | None:intergenic | 40.0% | |
| ATAGATGAAGCAGGTACTAG+TGG | - | chr5_2:56452980-56452999 | Msa0777480:intron | 40.0% | |
| ACAAGATACAAGTCACTCGA+CGG | - | chr5_2:56453015-56453034 | Msa0777480:intron | 40.0% | |
| TCATCCCAGTCATGAAGAAA+TGG | - | chr5_2:56453111-56453130 | Msa0777480:CDS | 40.0% | |
| GAGGCAGAATTGAAGAGATT+AGG | - | chr5_2:56453273-56453292 | Msa0777480:five_prime_UTR | 40.0% | |
| CCAACTAAACTGTGCAGTTA+AGG | + | chr5_2:56453325-56453344 | None:intergenic | 40.0% | |
| CCTTAACTGCACAGTTTAGT+TGG | - | chr5_2:56453322-56453341 | Msa0777480:five_prime_UTR | 40.0% | |
| ! | TTGACTTTGGATTGGGAGAG+AGG | - | chr5_2:56448054-56448073 | Msa0777480:three_prime_UTR | 45.0% |
| ! | TGACTTTGGATTGGGAGAGA+GGG | - | chr5_2:56448055-56448074 | Msa0777480:three_prime_UTR | 45.0% |
| AGGAAGGTTCAACTGGTGAA+TGG | - | chr5_2:56448138-56448157 | Msa0777480:CDS | 45.0% | |
| AAAGGGTGGTCTTTGATCTC+TGG | - | chr5_2:56448164-56448183 | Msa0777480:CDS | 45.0% | |
| GCCAAACTCTGCAACAAATG+CGG | - | chr5_2:56448194-56448213 | Msa0777480:CDS | 45.0% | |
| CCAAACTCTGCAACAAATGC+GGG | - | chr5_2:56448195-56448214 | Msa0777480:CDS | 45.0% | |
| CGTGTTTGAATCTCAGCCTT+TGG | - | chr5_2:56448460-56448479 | Msa0777480:CDS | 45.0% | |
| ! | TTGTGCTCCTCTAAAGGTCT+CGG | - | chr5_2:56448835-56448854 | Msa0777480:intron | 45.0% |
| ATCAATCCCGAGACCTTTAG+AGG | + | chr5_2:56448845-56448864 | None:intergenic | 45.0% | |
| CCACCAAAATTGGCATCAGA+GGG | + | chr5_2:56448869-56448888 | None:intergenic | 45.0% | |
| !! | CCTCTGATGCCAATTTTGGT+GGG | - | chr5_2:56448867-56448886 | Msa0777480:intron | 45.0% |
| !! | ATGGACTAGCCCACCAAAAT+TGG | + | chr5_2:56448879-56448898 | None:intergenic | 45.0% |
| ! | ATTGGACCCCTAGGATTAGT+CGG | - | chr5_2:56448949-56448968 | Msa0777480:intron | 45.0% |
| CAATGACCGACTAATCCTAG+GGG | + | chr5_2:56448958-56448977 | None:intergenic | 45.0% | |
| CCAATGACCGACTAATCCTA+GGG | + | chr5_2:56448959-56448978 | None:intergenic | 45.0% | |
| !! | CCTAGGATTAGTCGGTCATT+GGG | - | chr5_2:56448957-56448976 | Msa0777480:intron | 45.0% |
| ! | CATTGACTATCCCCTGCTTA+CGG | - | chr5_2:56449233-56449252 | Msa0777480:intron | 45.0% |
| TCCTCCATCCAGTTTCATGA+CGG | + | chr5_2:56449328-56449347 | None:intergenic | 45.0% | |
| GAAATGCAGCAATTGCAGCA+AGG | - | chr5_2:56449346-56449365 | Msa0777480:intron | 45.0% | |
| ! | TTTTTGCAGCCTATCCACAG+TGG | - | chr5_2:56449462-56449481 | Msa0777480:intron | 45.0% |
| TTCGAGTACCTTGATTTCGG+TGG | - | chr5_2:56449507-56449526 | Msa0777480:CDS | 45.0% | |
| ! | ATGTGTCGGTATCACAATGG+CGG | + | chr5_2:56449643-56449662 | None:intergenic | 45.0% |
| CTGGTGGAACAAGCTGTTAA+AGG | - | chr5_2:56449794-56449813 | Msa0777480:CDS | 45.0% | |
| ! | TTTTTCCCCTTCACATCAGC+AGG | + | chr5_2:56450268-56450287 | None:intergenic | 45.0% |
| TACTTTCTCGATACTGGCCA+AGG | - | chr5_2:56450293-56450312 | Msa0777480:CDS | 45.0% | |
| CAAGAGCTGGAGAAATTGTC+GGG | - | chr5_2:56450325-56450344 | Msa0777480:CDS | 45.0% | |
| AAGAGCTGGAGAAATTGTCG+GGG | - | chr5_2:56450326-56450345 | Msa0777480:CDS | 45.0% | |
| ! | ATACCTCAGCACACGCTTTT+GGG | + | chr5_2:56450800-56450819 | None:intergenic | 45.0% |
| ! | TATACCTCAGCACACGCTTT+TGG | + | chr5_2:56450801-56450820 | None:intergenic | 45.0% |
| GTCATACATGCCGCAATTAC+AGG | + | chr5_2:56450886-56450905 | None:intergenic | 45.0% | |
| TTGCAAGGACTGTATGCAAG+GGG | + | chr5_2:56451063-56451082 | None:intergenic | 45.0% | |
| TGAGGTGCACCAGAAAAGTT+TGG | + | chr5_2:56451414-56451433 | None:intergenic | 45.0% | |
| GAACATCTGCGTTTGGGTAA+TGG | - | chr5_2:56451516-56451535 | Msa0777480:CDS | 45.0% | |
| !! | TGGGTAATGGAACTGCTGAT+TGG | - | chr5_2:56451529-56451548 | Msa0777480:CDS | 45.0% |
| ACTGAAACCAGTTGCTGCAA+TGG | + | chr5_2:56451594-56451613 | None:intergenic | 45.0% | |
| ! | ATTTAGGAACCCCCGGTTTT+CGG | - | chr5_2:56451882-56451901 | Msa0777480:intron | 45.0% |
| ! | CAAATGTTTGGGATGCAGAC+AGG | - | chr5_2:56452130-56452149 | Msa0777480:intron | 45.0% |
| CCTGAAGACCTGAAAAACCA+TGG | + | chr5_2:56452226-56452245 | None:intergenic | 45.0% | |
| !!! | CCATGGTTTTTCAGGTCTTC+AGG | - | chr5_2:56452223-56452242 | Msa0777480:intron | 45.0% |
| ! | CTTGCCAATGCAGCAGTTTT+AGG | - | chr5_2:56452710-56452729 | Msa0777480:intron | 45.0% |
| GAATCACCACAAAACATCCG+AGG | - | chr5_2:56452771-56452790 | Msa0777480:intron | 45.0% | |
| ATTCAACCACCAAGTGGACA+GGG | - | chr5_2:56452824-56452843 | Msa0777480:intron | 45.0% | |
| ! | TCATGTTTTCCCTGTCCACT+TGG | + | chr5_2:56452836-56452855 | None:intergenic | 45.0% |
| !!! | ATTTTTGAAAATATAATTAA+AGG | - | chr5_2:56451328-56451347 | Msa0777480:CDS | 5.0% |
| !!! | TTTTTGAAAATATAATTAAA+GGG | - | chr5_2:56451329-56451348 | Msa0777480:CDS | 5.0% |
| !! | AAATATCTTATAATATATAT+TGG | - | chr5_2:56452036-56452055 | Msa0777480:intron | 5.0% |
| !!! | TAATTAATTCTTATATTTTA+TGG | - | chr5_2:56452593-56452612 | Msa0777480:intron | 5.0% |
| CTGGTGAATGGAAGAAAGGG+TGG | - | chr5_2:56448150-56448169 | Msa0777480:CDS | 50.0% | |
| GGTGGTCTTTGATCTCTGGT+GGG | - | chr5_2:56448168-56448187 | Msa0777480:CDS | 50.0% | |
| ! | CCCGCATTTGTTGCAGAGTT+TGG | + | chr5_2:56448198-56448217 | None:intergenic | 50.0% |
| TCGTTGACAGCGTGATACTC+CGG | - | chr5_2:56448577-56448596 | Msa0777480:CDS | 50.0% | |
| ! | TGTGCTCCTCTAAAGGTCTC+GGG | - | chr5_2:56448836-56448855 | Msa0777480:intron | 50.0% |
| ! | CCCTCTGATGCCAATTTTGG+TGG | - | chr5_2:56448866-56448885 | Msa0777480:intron | 50.0% |
| CCCACCAAAATTGGCATCAG+AGG | + | chr5_2:56448870-56448889 | None:intergenic | 50.0% | |
| !! | CCCTAGGATTAGTCGGTCAT+TGG | - | chr5_2:56448956-56448975 | Msa0777480:intron | 50.0% |
| CCCAATGACCGACTAATCCT+AGG | + | chr5_2:56448960-56448979 | None:intergenic | 50.0% | |
| TCCACCGTCATGAAACTGGA+TGG | - | chr5_2:56449321-56449340 | Msa0777480:intron | 50.0% | |
| TCCATCCAGTTTCATGACGG+TGG | + | chr5_2:56449325-56449344 | None:intergenic | 50.0% | |
| ACCGTCATGAAACTGGATGG+AGG | - | chr5_2:56449324-56449343 | Msa0777480:intron | 50.0% | |
| TTACCAGACAAAGCTGGGAG+GGG | + | chr5_2:56449557-56449576 | None:intergenic | 50.0% | |
| CTTACCAGACAAAGCTGGGA+GGG | + | chr5_2:56449558-56449577 | None:intergenic | 50.0% | |
| AAGTCGGTGAATCAAGCCGT+TGG | - | chr5_2:56449846-56449865 | Msa0777480:CDS | 50.0% | |
| CTCTTTGAGCTTGCGACCAA+CGG | + | chr5_2:56449865-56449884 | None:intergenic | 50.0% | |
| TGGTCGCAAGCTCAAAGAGA+TGG | - | chr5_2:56449866-56449885 | Msa0777480:CDS | 50.0% | |
| GCAAGCTCAAAGAGATGGCA+TGG | - | chr5_2:56449871-56449890 | Msa0777480:CDS | 50.0% | |
| TCTCCAATCTCAGTGGCCAA+CGG | + | chr5_2:56450103-56450122 | None:intergenic | 50.0% | |
| TTGGCCACTGAGATTGGAGA+AGG | - | chr5_2:56450103-56450122 | Msa0777480:intron | 50.0% | |
| AGAGCTGGAGAAATTGTCGG+GGG | - | chr5_2:56450327-56450346 | Msa0777480:CDS | 50.0% | |
| GTGTTAAGTCCGAGTGATGC+AGG | - | chr5_2:56450753-56450772 | Msa0777480:intron | 50.0% | |
| CCAATTCGACCTGCATCACT+CGG | + | chr5_2:56450765-56450784 | None:intergenic | 50.0% | |
| CAATGGTCCATTGCAGCAAC+TGG | - | chr5_2:56451584-56451603 | Msa0777480:intron | 50.0% | |
| AAAACCAGTGCCTCTCCATC+AGG | - | chr5_2:56451912-56451931 | Msa0777480:intron | 50.0% | |
| AAACCAGTGCCTCTCCATCA+GGG | - | chr5_2:56451913-56451932 | Msa0777480:intron | 50.0% | |
| CAAGGACTGCTTCAGTGCTT+TGG | + | chr5_2:56452561-56452580 | None:intergenic | 50.0% | |
| !! | CTGCATTGGCAAGAGCATCT+AGG | + | chr5_2:56452703-56452722 | None:intergenic | 50.0% |
| ! | ACGATGCCTCGGATGTTTTG+TGG | + | chr5_2:56452780-56452799 | None:intergenic | 50.0% |
| CACACGATACAAGTGCATCC+AGG | + | chr5_2:56452803-56452822 | None:intergenic | 50.0% | |
| GTGTGCATTCAACCACCAAG+TGG | - | chr5_2:56452818-56452837 | Msa0777480:intron | 50.0% | |
| CATTCAACCACCAAGTGGAC+AGG | - | chr5_2:56452823-56452842 | Msa0777480:intron | 50.0% | |
| ! | TGTTTTCCCTGTCCACTTGG+TGG | + | chr5_2:56452833-56452852 | None:intergenic | 50.0% |
| GCATCGTAAGGCTCTTGAAC+CGG | + | chr5_2:56452898-56452917 | None:intergenic | 50.0% | |
| GATGAAGCAGGTACTAGTGG+TGG | - | chr5_2:56452983-56453002 | Msa0777480:intron | 50.0% | |
| TACAAGTCACTCGACGGATG+AGG | - | chr5_2:56453021-56453040 | Msa0777480:intron | 50.0% | |
| ACAAGTCACTCGACGGATGA+GGG | - | chr5_2:56453022-56453041 | Msa0777480:intron | 50.0% | |
| ACGGATGAGGGAAGCCTAAA+TGG | - | chr5_2:56453034-56453053 | Msa0777480:intron | 50.0% | |
| GATGAGGGAAGCCTAAATGG+AGG | - | chr5_2:56453037-56453056 | Msa0777480:intron | 50.0% | |
| CCTCAAGCTGACCTCCATTT+AGG | + | chr5_2:56453051-56453070 | None:intergenic | 50.0% | |
| CCTAAATGGAGGTCAGCTTG+AGG | - | chr5_2:56453048-56453067 | Msa0777480:intron | 50.0% | |
| GGGTGGTCTTTGATCTCTGG+TGG | - | chr5_2:56448167-56448186 | Msa0777480:CDS | 55.0% | |
| !! | TACCCACTTGGTTGGCCTAG+CGG | - | chr5_2:56448792-56448811 | Msa0777480:intron | 55.0% |
| TTAAATGGGCCCCCCGCAAT+TGG | - | chr5_2:56448918-56448937 | Msa0777480:intron | 55.0% | |
| AATCCCACCGTCCAATTGCG+GGG | + | chr5_2:56448932-56448951 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCAATTGC+GGG | + | chr5_2:56448933-56448952 | None:intergenic | 55.0% | |
| CCAATCCCACCGTCCAATTG+CGG | + | chr5_2:56448934-56448953 | None:intergenic | 55.0% | |
| AAGCTGGGAGGGGTTAACAC+AGG | + | chr5_2:56449547-56449566 | None:intergenic | 55.0% | |
| ! | TAACCCCTCCCAGCTTTGTC+TGG | - | chr5_2:56449551-56449570 | Msa0777480:CDS | 55.0% |
| CCTTACCAGACAAAGCTGGG+AGG | + | chr5_2:56449559-56449578 | None:intergenic | 55.0% | |
| ! | CCTCCCAGCTTTGTCTGGTA+AGG | - | chr5_2:56449556-56449575 | Msa0777480:CDS | 55.0% |
| TGATCTCTCATCCACCACGC+CGG | - | chr5_2:56450239-56450258 | Msa0777480:CDS | 55.0% | |
| TTCCCCTTCACATCAGCAGG+TGG | + | chr5_2:56450265-56450284 | None:intergenic | 55.0% | |
| CCGAGTGATGCAGGTCGAAT+TGG | - | chr5_2:56450762-56450781 | Msa0777480:intron | 55.0% | |
| !! | TTTGGCTTGACACTAGGCGG+CGG | + | chr5_2:56451732-56451751 | None:intergenic | 55.0% |
| ! | TTACCCTGATGGAGAGGCAC+TGG | + | chr5_2:56451919-56451938 | None:intergenic | 55.0% |
| GGTTCTGCATCAGACCAGCT+CGG | - | chr5_2:56452244-56452263 | Msa0777480:intron | 55.0% | |
| ATCAGACCAGCTCGGTCCAA+AGG | - | chr5_2:56452252-56452271 | Msa0777480:intron | 55.0% | |
| CTTGTTCCTTTGGACCGAGC+TGG | + | chr5_2:56452261-56452280 | None:intergenic | 55.0% | |
| !! | AAACATCCGAGGCATCGTCC+TGG | - | chr5_2:56452782-56452801 | Msa0777480:intron | 55.0% |
| AGGCAAGGCAAGTGCATGTC+GGG | + | chr5_2:56452859-56452878 | None:intergenic | 55.0% | |
| CAGGCAAGGCAAGTGCATGT+CGG | + | chr5_2:56452860-56452879 | None:intergenic | 55.0% | |
| GGTTGTTGAGCCTAGTGCTG+CGG | - | chr5_2:56453069-56453088 | Msa0777480:CDS | 55.0% | |
| GTTGTTGAGCCTAGTGCTGC+GGG | - | chr5_2:56453070-56453089 | Msa0777480:CDS | 55.0% | |
| TCCAATTGTCCCGCAGCACT+AGG | + | chr5_2:56453082-56453101 | None:intergenic | 55.0% | |
| CACCGCTAGGCCAACCAAGT+GGG | + | chr5_2:56448797-56448816 | None:intergenic | 60.0% | |
| ACACCGCTAGGCCAACCAAG+TGG | + | chr5_2:56448798-56448817 | None:intergenic | 60.0% | |
| !! | CTTGGTTGGCCTAGCGGTGT+TGG | - | chr5_2:56448798-56448817 | Msa0777480:intron | 60.0% |
| !! | TTGGCCTAGCGGTGTTGGCT+TGG | - | chr5_2:56448803-56448822 | Msa0777480:intron | 60.0% |
| !! | TGGCCTAGCGGTGTTGGCTT+GGG | - | chr5_2:56448804-56448823 | Msa0777480:intron | 60.0% |
| GATCCCAAGCCAACACCGCT+AGG | + | chr5_2:56448810-56448829 | None:intergenic | 60.0% | |
| ATCCCACCGTCCAATTGCGG+GGG | + | chr5_2:56448931-56448950 | None:intergenic | 60.0% | |
| CCGCAATTGGACGGTGGGAT+TGG | - | chr5_2:56448931-56448950 | Msa0777480:intron | 60.0% | |
| CTGCCGTTGGCCACTGAGAT+TGG | - | chr5_2:56450097-56450116 | Msa0777480:intron | 60.0% | |
| CCTTCACATCAGCAGGTGGC+CGG | + | chr5_2:56450261-56450280 | None:intergenic | 60.0% | |
| CGGCCACCTGCTGATGTGAA+GGG | - | chr5_2:56450259-56450278 | Msa0777480:CDS | 60.0% | |
| GGCCACCTGCTGATGTGAAG+GGG | - | chr5_2:56450260-56450279 | Msa0777480:CDS | 60.0% | |
| ! | GCTCCCAAAAGCGTGTGCTG+AGG | - | chr5_2:56450794-56450813 | Msa0777480:intron | 60.0% |
| CAGCTGACGACGACTCGTCA+GGG | + | chr5_2:56452751-56452770 | None:intergenic | 60.0% | |
| GTGCATCCAGGACGATGCCT+CGG | + | chr5_2:56452791-56452810 | None:intergenic | 60.0% | |
| GCCTAGTGCTGCGGGACAAT+TGG | - | chr5_2:56453078-56453097 | Msa0777480:CDS | 60.0% | |
| ATGGGCCCCCCGCAATTGGA+CGG | - | chr5_2:56448922-56448941 | Msa0777480:intron | 65.0% | |
| TCCCACCGTCCAATTGCGGG+GGG | + | chr5_2:56448930-56448949 | None:intergenic | 65.0% | |
| GACGGTGGGATTGGACCCCT+AGG | - | chr5_2:56448940-56448959 | Msa0777480:intron | 65.0% | |
| CCGGCCACCTGCTGATGTGA+AGG | - | chr5_2:56450258-56450277 | Msa0777480:CDS | 65.0% | |
| CCAGCTGACGACGACTCGTC+AGG | + | chr5_2:56452752-56452771 | None:intergenic | 65.0% | |
| CCTGACGAGTCGTCGTCAGC+TGG | - | chr5_2:56452749-56452768 | Msa0777480:intron | 65.0% | |
| GCCCCCCGCAATTGGACGGT+GGG | - | chr5_2:56448926-56448945 | Msa0777480:intron | 70.0% | |
| ACATCAGCAGGTGGCCGGCG+TGG | + | chr5_2:56450256-56450275 | None:intergenic | 70.0% | |
| GGCCCCCCGCAATTGGACGG+TGG | - | chr5_2:56448925-56448944 | Msa0777480:intron | 75.0% | |
| TCAGCAGGTGGCCGGCGTGG+TGG | + | chr5_2:56450253-56450272 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56447884 | 56453400 | 56447884 | ID=Msa0777480;Name=Msa0777480 |
| chr5_2 | mRNA | 56447884 | 56453400 | 56447884 | ID=Msa0777480-mRNA-1;Parent=Msa0777480;Name=Msa0777480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=220|1|0.90|1|1|1|11|232|786 |
| chr5_2 | exon | 56447884 | 56448648 | 56447884 | ID=Msa0777480-mRNA-1:exon:16729;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56448980 | 56449047 | 56448980 | ID=Msa0777480-mRNA-1:exon:16728;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56449350 | 56449396 | 56449350 | ID=Msa0777480-mRNA-1:exon:16727;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56449493 | 56449918 | 56449493 | ID=Msa0777480-mRNA-1:exon:16726;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56450027 | 56450103 | 56450027 | ID=Msa0777480-mRNA-1:exon:16725;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56450183 | 56450357 | 56450183 | ID=Msa0777480-mRNA-1:exon:16724;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56450469 | 56450565 | 56450469 | ID=Msa0777480-mRNA-1:exon:16723;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56450934 | 56451574 | 56450934 | ID=Msa0777480-mRNA-1:exon:16722;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56451712 | 56451813 | 56451712 | ID=Msa0777480-mRNA-1:exon:16721;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56451917 | 56451998 | 56451917 | ID=Msa0777480-mRNA-1:exon:16720;Parent=Msa0777480-mRNA-1 |
| chr5_2 | exon | 56453068 | 56453400 | 56453068 | ID=Msa0777480-mRNA-1:exon:16719;Parent=Msa0777480-mRNA-1 |
| chr5_2 | five_prime_UTR | 56453181 | 56453400 | 56453181 | ID=Msa0777480-mRNA-1:five_prime_utr;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56453068 | 56453180 | 56453068 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56451917 | 56451998 | 56451917 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56451712 | 56451813 | 56451712 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56450934 | 56451574 | 56450934 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56450469 | 56450565 | 56450469 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56450183 | 56450357 | 56450183 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56450027 | 56450103 | 56450027 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56449493 | 56449918 | 56449493 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56449350 | 56449396 | 56449350 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56448980 | 56449047 | 56448980 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | CDS | 56448116 | 56448648 | 56448116 | ID=Msa0777480-mRNA-1:cds;Parent=Msa0777480-mRNA-1 |
| chr5_2 | three_prime_UTR | 56447884 | 56448115 | 56447884 | ID=Msa0777480-mRNA-1:three_prime_utr;Parent=Msa0777480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
