AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777770 MtrunA17_Chr5g0433211 95.096 571 27 1 1 570 1 571 0.0 1115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777770 AT3G02680.1 46.457 127 66 1 443 569 416 540 1.38e-30 126

Find 143 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTCCAGATTGAGTTTC+TGG 0.077419 5_2:+57114366 None:intergenic
ACCCTGTGACAGTATAAATT+TGG 0.116066 5_2:-57117119 Msa0777770:intron
TGCTAAAACTATTTCGTTTC+AGG 0.118325 5_2:-57117063 Msa0777770:CDS
TTTCTAAAGCGTTTGAAATT+TGG 0.118631 5_2:+57114592 None:intergenic
ATCAACAAGATCTTTCTTTA+AGG 0.128095 5_2:+57118585 None:intergenic
TATCTCGAACAATTAAATTT+TGG 0.180275 5_2:+57114659 None:intergenic
TTCATGTAGGGTTCAGATTA+TGG 0.222545 5_2:-57116526 Msa0777770:intron
AGGGAAAGACCAAAAGTTTA+AGG 0.222998 5_2:+57120979 None:intergenic
ACAAATAGAACTCATGTTTC+AGG 0.243773 5_2:-57112444 Msa0777770:three_prime_UTR
TTCCCCGTCGATCCTCTTTC+CGG 0.257235 5_2:-57120885 Msa0777770:intron
CTGCCAACTTTGTAAGTTCC+AGG 0.265017 5_2:+57120738 None:intergenic
CCCTGTGACAGTATAAATTT+GGG 0.275122 5_2:-57117118 Msa0777770:intron
AACAATAGGGATTCTGACTA+TGG 0.275441 5_2:-57114191 Msa0777770:intron
GACCTAAGCCCTTAAACTTT+TGG 0.282430 5_2:-57120988 None:intergenic
CTTAATAATTTATTGAAATC+AGG 0.283827 5_2:+57116454 None:intergenic
CATGTGTGCATTCTTCATTC+AGG 0.285727 5_2:+57118629 None:intergenic
GATGGTGACCTTGTTTCTTT+TGG 0.302325 5_2:-57119364 Msa0777770:CDS
TGTAATGCTGTTTCTTTGTT+TGG 0.306234 5_2:+57119388 None:intergenic
AAACAAAGAAACAGCATTAC+AGG 0.318544 5_2:-57119386 Msa0777770:CDS
AATCATCATCATCATGGTTT+GGG 0.321136 5_2:-57120913 Msa0777770:exon
GTGATTGTCACAAAAGATAA+AGG 0.322658 5_2:-57119577 Msa0777770:CDS
TAATATTATTCTTACTTGTA+TGG 0.330086 5_2:+57114312 None:intergenic
ACATTTGTGAGCAAGAATAT+TGG 0.335155 5_2:-57119436 Msa0777770:CDS
TCAACAAGATCTTTCTTTAA+GGG 0.337673 5_2:+57118586 None:intergenic
GAAGAATTAGTTGATGATTC+CGG 0.341810 5_2:-57114958 Msa0777770:CDS
GGTTTGCATGTCGCTCCTCC+TGG 0.343092 5_2:+57116475 None:intergenic
GATCCTCTTGTTTCCATTGT+AGG 0.343122 5_2:-57112479 Msa0777770:three_prime_UTR
GGATCAGCTAAATTCTTTAC+TGG 0.347931 5_2:-57117096 Msa0777770:CDS
TGAATCCTCTCGACACCTTA+TGG 0.361135 5_2:-57112158 Msa0777770:three_prime_UTR
AAACTGTATGTTTATTCAAC+AGG 0.362357 5_2:-57112238 Msa0777770:three_prime_UTR
ATAAGAGATTGCTCCAAGTA+TGG 0.364300 5_2:-57119460 Msa0777770:CDS
GAATCATCATCATCATGGTT+TGG 0.364428 5_2:-57120914 Msa0777770:exon
TTTCTGCCGGTTTGCATAAG+AGG 0.374179 5_2:-57114885 Msa0777770:CDS
GAGGAGAAAATTTCGTCAAT+TGG 0.377256 5_2:-57119117 Msa0777770:intron
TGTGTTGGAATCTGTGCATC+TGG 0.377903 5_2:-57117353 Msa0777770:intron
CATTTGTGAGCAAGAATATT+GGG 0.389990 5_2:-57119435 Msa0777770:CDS
ACCGGCAGAAACATCATCTA+AGG 0.396068 5_2:+57114897 None:intergenic
CAAAAGATAAAGGGGTTTCT+CGG 0.398067 5_2:-57119567 Msa0777770:CDS
GTAGAGCATGATGATGAAAT+AGG 0.404442 5_2:+57115078 None:intergenic
AATTCTTTACTGGAAGTTGC+TGG 0.407605 5_2:-57117086 Msa0777770:CDS
GCTCACAAATGTTCCATACT+TGG 0.415647 5_2:+57119447 None:intergenic
GCCGTCTGATCTAAAATTGA+TGG 0.416349 5_2:-57112342 Msa0777770:three_prime_UTR
GTTTGGTGCAGAACTTCTAT+TGG 0.418595 5_2:+57114624 None:intergenic
TGTTGAATAAACATACAGTT+TGG 0.418606 5_2:+57112240 None:intergenic
TTTCCTCTTGTCTGAAATGC+CGG 0.419380 5_2:+57114939 None:intergenic
TGTTTATTCAACAGGCAATT+CGG 0.422791 5_2:-57112230 Msa0777770:three_prime_UTR
GGGAAAGACCAAAAGTTTAA+GGG 0.426288 5_2:+57120980 None:intergenic
GCAATTCGGATCCCTCGAAT+TGG 0.429861 5_2:-57112216 Msa0777770:three_prime_UTR
TGAAATACATACTTGGCTAT+AGG 0.433355 5_2:+57117031 None:intergenic
AATCATGTGTTCTCAAAACT+TGG 0.438979 5_2:-57118546 Msa0777770:CDS
ACTTACAAAGTTGGCAGAAA+AGG 0.443154 5_2:-57120732 Msa0777770:intron
AAAAGATAAAGGGGTTTCTC+GGG 0.443588 5_2:-57119566 Msa0777770:CDS
TACACTCACCACCAGCTTCA+AGG 0.444508 5_2:-57114758 Msa0777770:CDS
TGATTGTCACAAAAGATAAA+GGG 0.445978 5_2:-57119576 Msa0777770:CDS
GATTCAGATAGCAATGCAAT+AGG 0.461017 5_2:+57112175 None:intergenic
TCAAGCTACCACTCAGATAC+AGG 0.462288 5_2:+57112504 None:intergenic
AAATTTGGAACACTGCTGTT+TGG 0.462771 5_2:+57114607 None:intergenic
AGATCGATCGACTTGATTTG+AGG 0.465806 5_2:+57119143 None:intergenic
GTATCTGAGTGGTAGCTTGA+AGG 0.471085 5_2:-57112501 Msa0777770:three_prime_UTR
TTCAAGAATCATCATCATCA+TGG 0.473632 5_2:-57120919 Msa0777770:exon
TCCTTAGATGATGTTTCTGC+CGG 0.477180 5_2:-57114898 Msa0777770:CDS
CAGATCGGACAGAAGCATCC+AGG 0.477641 5_2:+57114782 None:intergenic
TGGCGGTAACCTTGACCATA+AGG 0.479738 5_2:+57112143 None:intergenic
GTTTGCATGTCGCTCCTCCT+GGG 0.482687 5_2:+57116476 None:intergenic
AAATTTCAAACGCTTTAGAA+AGG 0.485141 5_2:-57114590 Msa0777770:intron
AAACCTGGAACTTACAAAGT+TGG 0.488810 5_2:-57120741 Msa0777770:CDS
AAGTACTTACGAATGACAGC+TGG 0.496205 5_2:+57117573 None:intergenic
ATGTGTGCATTCTTCATTCA+GGG 0.496407 5_2:+57118630 None:intergenic
TTGCAGCCAGAAACTCAATC+TGG 0.499482 5_2:-57114372 Msa0777770:intron
ACATAATGCCTCGCTTCCAT+AGG 0.500430 5_2:+57115002 None:intergenic
ACTGGTAGAAACGTCATCAA+TGG 0.500746 5_2:+57114840 None:intergenic
AGTATGTGAAGGAGGAGAAA+AGG 0.510191 5_2:-57114151 Msa0777770:CDS
AAAGTTGATGATTATGCAAG+TGG 0.512402 5_2:-57114703 Msa0777770:CDS
GACTCAACTAAGCTGCAGTT+GGG 0.519979 5_2:+57112586 None:intergenic
GGATATGTTGGCATTCTGCT+TGG 0.520036 5_2:-57112643 Msa0777770:three_prime_UTR
TTGCAGTTGCTTCCAATTCG+AGG 0.520122 5_2:+57112204 None:intergenic
TGCAGTTGCTTCCAATTCGA+GGG 0.525143 5_2:+57112205 None:intergenic
GGCAAAATAGTGATGAGAAG+AGG 0.528967 5_2:+57120959 None:intergenic
AGACTCAACTAAGCTGCAGT+TGG 0.529713 5_2:+57112585 None:intergenic
GCCAGTGCCATCCTTGAAGC+TGG 0.532915 5_2:+57114747 None:intergenic
TTTACTTCGTACGCCTACAA+TGG 0.535740 5_2:+57112466 None:intergenic
GGCACTGCTGGTTCTATTCA+CGG 0.537685 5_2:-57113958 Msa0777770:CDS
TTTGAATGGGTACCGGAAAG+AGG 0.546345 5_2:+57120873 None:intergenic
CGTATGGTTTGTGTCATCCC+AGG 0.552035 5_2:-57116493 Msa0777770:CDS
TATGGAAGCGAGGCATTATG+TGG 0.553272 5_2:-57115000 Msa0777770:CDS
GCTCCTTCCACTGACACTGT+TGG 0.553553 5_2:+57117433 None:intergenic
AGGAACAGATGAAAAGAATG+AGG 0.555532 5_2:+57119163 None:intergenic
TCAGGTTGGCTGACATGTGA+AGG 0.556823 5_2:-57112426 Msa0777770:three_prime_UTR
CTCTCGACACCTTATGGTCA+AGG 0.557532 5_2:-57112152 Msa0777770:three_prime_UTR
GTACCGGAAAGAGGATCGAC+GGG 0.560116 5_2:+57120882 None:intergenic
TGAAGAATGCACACATGTGC+TGG 0.563281 5_2:-57118623 Msa0777770:CDS
CATAATGCCTCGCTTCCATA+GGG 0.563507 5_2:+57115003 None:intergenic
GCTCGCGAAAACTGTTTGAA+AGG 0.563910 5_2:-57117385 Msa0777770:CDS
TTCTCAATCAAAACACACAC+AGG 0.566178 5_2:+57112561 None:intergenic
GACAGCTGAGTATGTGAAGG+AGG 0.566483 5_2:-57114159 Msa0777770:CDS
CACTCAGATACAGGTGTGTG+TGG 0.572311 5_2:+57112513 None:intergenic
TGCAAAAGCAGACATATCCC+TGG 0.574787 5_2:-57114800 Msa0777770:CDS
GGAACAGATGAAAAGAATGA+GGG 0.576775 5_2:+57119164 None:intergenic
TTATGGAGATGATAGTCGTA+TGG 0.578302 5_2:-57116509 Msa0777770:CDS
ACATATTCCAACAGTGTCAG+TGG 0.578650 5_2:-57117440 Msa0777770:CDS
ACCAGCTTCAAGGATGGCAC+TGG 0.581299 5_2:-57114748 Msa0777770:CDS
GAAACAGCCACATCACCCTA+TGG 0.585136 5_2:-57115018 Msa0777770:CDS
ATTCCGGCATTTCAGACAAG+AGG 0.589737 5_2:-57114942 Msa0777770:CDS
GCAATCTCTTATCTGTACAC+TGG 0.591818 5_2:+57119471 None:intergenic
TCAAGTCGATCGATCTCTTG+AGG 0.592895 5_2:-57119136 Msa0777770:CDS
GCAAAATAGTGATGAGAAGA+GGG 0.593846 5_2:+57120960 None:intergenic
ATAGAACTCATGTTTCAGGT+TGG 0.594606 5_2:-57112440 Msa0777770:three_prime_UTR
CTGTGAAAAGGTGGATATGT+TGG 0.595084 5_2:-57112655 Msa0777770:three_prime_UTR
TGTTCTCAAAACTTGGCTTG+AGG 0.595642 5_2:-57118539 Msa0777770:intron
CTCACCACCAGCTTCAAGGA+TGG 0.596741 5_2:-57114754 Msa0777770:CDS
AGATCTTGTTGATGCAGTTG+TGG 0.600775 5_2:-57118575 Msa0777770:CDS
CTCGCTTCCATAGGGTGATG+TGG 0.601944 5_2:+57115011 None:intergenic
AGATCGGACAGAAGCATCCA+GGG 0.608547 5_2:+57114783 None:intergenic
AGTACTTACGAATGACAGCT+GGG 0.611501 5_2:+57117574 None:intergenic
ATTAAATAGATCATCAGCCA+CGG 0.612143 5_2:+57114112 None:intergenic
TGAAACACTGAAGCGGAAAG+CGG 0.614181 5_2:+57120938 None:intergenic
GATTGTCACAAAAGATAAAG+GGG 0.614513 5_2:-57119575 Msa0777770:CDS
ATTCCAACAGTGTCAGTGGA+AGG 0.615326 5_2:-57117436 Msa0777770:CDS
ATAATAAATGCTGCTCTCAG+TGG 0.619013 5_2:-57116403 Msa0777770:CDS
TTCCTTGCTAAAAGTCAATG+AGG 0.621471 5_2:-57116431 Msa0777770:CDS
GGTACCGGAAAGAGGATCGA+CGG 0.624033 5_2:+57120881 None:intergenic
TGGTGGTGAGTGTATCAGAT+CGG 0.635224 5_2:+57114767 None:intergenic
TGATTCTTGAAACACTGAAG+CGG 0.637197 5_2:+57120931 None:intergenic
TGATCTATTTAATAATCAGA+AGG 0.639530 5_2:-57114102 Msa0777770:intron
GCGAAAGCAAAGAGAAGCCG+TGG 0.640519 5_2:-57114129 Msa0777770:CDS
ATCATCATCATCATGGTTTG+GGG 0.643499 5_2:-57120912 Msa0777770:exon
CACATCACCCTATGGAAGCG+AGG 0.646484 5_2:-57115010 Msa0777770:CDS
TTTGGGGTCTCATGTGATGG+CGG 0.651191 5_2:+57112126 None:intergenic
AGTGCCATCCTTGAAGCTGG+TGG 0.652084 5_2:+57114750 None:intergenic
ACGCCTACAATGGAAACAAG+AGG 0.659045 5_2:+57112476 None:intergenic
AAAGAAACAGCATTACAGGA+TGG 0.663652 5_2:-57119382 Msa0777770:CDS
GGAAGCGAGGCATTATGTGG+TGG 0.669971 5_2:-57114997 Msa0777770:CDS
TACCAGTGCCAAAAGAAACA+AGG 0.672248 5_2:+57119356 None:intergenic
GAACAGATGAAAAGAATGAG+GGG 0.674475 5_2:+57119165 None:intergenic
CTTGACCATAAGGTGTCGAG+AGG 0.675788 5_2:+57112153 None:intergenic
CCTGTGACAGTATAAATTTG+GGG 0.677249 5_2:-57117117 Msa0777770:intron
ATGGTTTGTGTCATCCCAGG+AGG 0.682470 5_2:-57116490 Msa0777770:CDS
AACAGATGAAAAGAATGAGG+GGG 0.694108 5_2:+57119166 None:intergenic
ATACAGGTGTGTGTGGACAG+AGG 0.696438 5_2:+57112520 None:intergenic
CACACACACCTGTATCTGAG+TGG 0.724104 5_2:-57112512 Msa0777770:three_prime_UTR
TCTCAATCAAAACACACACA+GGG 0.726452 5_2:+57112562 None:intergenic
TGAGACAGCTGAGTATGTGA+AGG 0.744102 5_2:-57114162 Msa0777770:CDS
TACCGGAAAGAGGATCGACG+GGG 0.800849 5_2:+57120883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTTGGATTAT+AGG - chr5_2:57112286-57112305 Msa0777770:intron 10.0%
!! CAATAATCAAATTAAATTAT+TGG + chr5_2:57112325-57112344 None:intergenic 10.0%
!!! TAATTTAATTTGATTATTGT+AGG - chr5_2:57112326-57112345 Msa0777770:three_prime_UTR 10.0%
!!! TTTTTATAGAAAATGAAAAT+GGG + chr5_2:57112478-57112497 None:intergenic 10.0%
!!! TTTTTTATAGAAAATGAAAA+TGG + chr5_2:57112479-57112498 None:intergenic 10.0%
!!! ATTTTATAAATTTTGACTAA+TGG + chr5_2:57115336-57115355 None:intergenic 10.0%
!! ATAAAAATTATCATTAATTC+TGG + chr5_2:57117180-57117199 None:intergenic 10.0%
!! ACAAAAATATAATAAATGAA+CGG + chr5_2:57117257-57117276 None:intergenic 10.0%
!!! TATTATTATATTATTTTTGG+TGG - chr5_2:57117391-57117410 Msa0777770:CDS 10.0%
!!! ATATTTATAGGTATAATTTT+AGG - chr5_2:57117610-57117629 Msa0777770:CDS 10.0%
!!! TGTTATTTTAAAAAAAATTC+TGG - chr5_2:57118838-57118857 Msa0777770:intron 10.0%
!!! TTTGTATTTTATGTTTATAA+AGG - chr5_2:57119375-57119394 Msa0777770:CDS 10.0%
!!! TATTTTACTACTTTAAAATA+TGG - chr5_2:57119421-57119440 Msa0777770:CDS 10.0%
!! AAATAAAAATTGAAAGGTAA+CGG + chr5_2:57112275-57112294 None:intergenic 15.0%
!! CCAAAAAAATAAAAATTGAA+AGG + chr5_2:57112281-57112300 None:intergenic 15.0%
!!! CCTTTCAATTTTTATTTTTT+TGG - chr5_2:57112278-57112297 Msa0777770:intron 15.0%
!!! TTTTTTTATTGTTTTGCTAT+TGG - chr5_2:57112507-57112526 Msa0777770:three_prime_UTR 15.0%
!! AAATCAATAAAACTTATAAC+AGG + chr5_2:57113419-57113438 None:intergenic 15.0%
!!! TATTCTGTATTAGATATTTT+GGG - chr5_2:57114611-57114630 Msa0777770:CDS 15.0%
!!! AAACATCTTAAAATTTTTGT+AGG - chr5_2:57115925-57115944 Msa0777770:intron 15.0%
!!! AGTTAGTTAGTTATTTTATA+TGG - chr5_2:57116172-57116191 Msa0777770:intron 15.0%
!! CTTAATAATTTATTGAAATC+AGG + chr5_2:57116661-57116680 None:intergenic 15.0%
!! ACTAAAAAAAGTTTGAATTT+AGG + chr5_2:57116843-57116862 None:intergenic 15.0%
!! AAAAACCATAACATATTTAT+AGG - chr5_2:57117598-57117617 Msa0777770:CDS 15.0%
!! TTATACCTATAAATATGTTA+TGG + chr5_2:57117606-57117625 None:intergenic 15.0%
!! TAATATTATTCTTACTTGTA+TGG + chr5_2:57118803-57118822 None:intergenic 15.0%
!!! TTTCATTTATTTTCAACAAT+AGG - chr5_2:57118907-57118926 Msa0777770:intron 15.0%
!!! TTCATTTATTTTCAACAATA+GGG - chr5_2:57118908-57118927 Msa0777770:intron 15.0%
!! TTCTCATTAAAACATTATTT+AGG + chr5_2:57119284-57119303 None:intergenic 15.0%
!!! GTTTTTAGAACATTGTTTTA+GGG - chr5_2:57112810-57112829 Msa0777770:intron 20.0%
!!! ACAATTTGTTTAGAAAAATG+AGG - chr5_2:57112886-57112905 Msa0777770:intron 20.0%
!!! TTGAATGTTTAGATTTTGTT+AGG - chr5_2:57112937-57112956 Msa0777770:intron 20.0%
!! GCTTAAGATTAATTATAAAC+AGG + chr5_2:57112978-57112997 None:intergenic 20.0%
!!! TCACTTTGAAATATGAATAA+GGG + chr5_2:57113280-57113299 None:intergenic 20.0%
!!! TTCACTTTGAAATATGAATA+AGG + chr5_2:57113281-57113300 None:intergenic 20.0%
!! AAAATAGTTAACATACTTGT+AGG + chr5_2:57113788-57113807 None:intergenic 20.0%
!! TAAAGAGGAAAGTTAAATAA+AGG + chr5_2:57114348-57114367 None:intergenic 20.0%
!!! GTATTCTGTATTAGATATTT+TGG - chr5_2:57114610-57114629 Msa0777770:CDS 20.0%
!! ATTATATGATACTTGTAACT+TGG + chr5_2:57114944-57114963 None:intergenic 20.0%
!! AAAAAGAAAACTTCTTTAGT+TGG + chr5_2:57115622-57115641 None:intergenic 20.0%
!! ATATTGAAATGTAAATATGC+AGG - chr5_2:57115867-57115886 Msa0777770:intron 20.0%
!! AAAGAAATGAAATACATACT+TGG + chr5_2:57116091-57116110 None:intergenic 20.0%
!!! TTCAAATGCATGTTTTTTTT+TGG + chr5_2:57116385-57116404 None:intergenic 20.0%
!! AGTAATCTTAAAAATTACTG+GGG + chr5_2:57116438-57116457 None:intergenic 20.0%
!! CAGTAATCTTAAAAATTACT+GGG + chr5_2:57116439-57116458 None:intergenic 20.0%
!! TCAGTAATCTTAAAAATTAC+TGG + chr5_2:57116440-57116459 None:intergenic 20.0%
!! ATTTCTCATTTATTTCATGT+AGG - chr5_2:57116573-57116592 Msa0777770:intron 20.0%
!! TTTCTCATTTATTTCATGTA+GGG - chr5_2:57116574-57116593 Msa0777770:intron 20.0%
!! ACATTCATATACATGAAAAA+AGG + chr5_2:57116922-57116941 None:intergenic 20.0%
!! TAATACTGTAAAACTTTGAT+TGG + chr5_2:57117146-57117165 None:intergenic 20.0%
!!! AAAAAGCTTTGATTATTGAT+TGG - chr5_2:57117222-57117241 Msa0777770:intron 20.0%
!!! TATTATATTATTTTTGGTGG+TGG - chr5_2:57117394-57117413 Msa0777770:CDS 20.0%
!!! ATTATATTATTTTTGGTGGT+GGG - chr5_2:57117395-57117414 Msa0777770:CDS 20.0%
!!! ATTTTTTGTTGTTTTTGTGA+TGG + chr5_2:57117440-57117459 None:intergenic 20.0%
!!! ATTTTGTATTGTTTAAGATG+TGG + chr5_2:57117692-57117711 None:intergenic 20.0%
!!! TATCTCGAACAATTAAATTT+TGG + chr5_2:57118456-57118475 None:intergenic 20.0%
!! AATTCCATTTCAAAGAAAAT+TGG + chr5_2:57118722-57118741 None:intergenic 20.0%
!! TGATCTATTTAATAATCAGA+AGG - chr5_2:57119010-57119029 Msa0777770:intron 20.0%
!! AAAACATTATTTAGGTAACT+TGG + chr5_2:57119276-57119295 None:intergenic 20.0%
!! TATAAACCAATAATGTTTGT+TGG + chr5_2:57119958-57119977 None:intergenic 20.0%
!! ATTAAACCAAGAAAAACAAA+TGG + chr5_2:57120079-57120098 None:intergenic 20.0%
!! TTCTTCTTTCATATTTCATT+TGG - chr5_2:57120348-57120367 Msa0777770:intron 20.0%
!! TTAATTAGATAGAGATTGAA+CGG + chr5_2:57120841-57120860 None:intergenic 20.0%
!! TTCAATCTCTATCTAATTAA+AGG - chr5_2:57120841-57120860 Msa0777770:intron 20.0%
!! AATTACTACATTTTCAAACC+TGG - chr5_2:57112356-57112375 Msa0777770:three_prime_UTR 25.0%
!!! CAATGTTTTAAAAACCGAAT+TGG - chr5_2:57112683-57112702 Msa0777770:intron 25.0%
!!! GGTTTTTAGAACATTGTTTT+AGG - chr5_2:57112809-57112828 Msa0777770:intron 25.0%
!! AATGTTTAGATTTTGTTAGG+TGG - chr5_2:57112940-57112959 Msa0777770:intron 25.0%
!! CATTTTTGTTCTAATCTTCT+AGG - chr5_2:57113184-57113203 Msa0777770:intron 25.0%
! TATTGTTACTATATGCTTAC+AGG - chr5_2:57113505-57113524 Msa0777770:intron 25.0%
! TGATTGTCACAAAAGATAAA+GGG - chr5_2:57113536-57113555 Msa0777770:intron 25.0%
! CATGTACTAAAAATTAAGTG+TGG + chr5_2:57113844-57113863 None:intergenic 25.0%
!!! ATTTTTAGTACATGTTTCTG+CGG - chr5_2:57113850-57113869 Msa0777770:intron 25.0%
! CATTTACTACAAATAAAGAG+TGG + chr5_2:57113878-57113897 None:intergenic 25.0%
! CACTTTGAATTAAATTTGAC+AGG - chr5_2:57113912-57113931 Msa0777770:intron 25.0%
!!! CTGTCTTATTACTTACTTTT+GGG - chr5_2:57114072-57114091 Msa0777770:intron 25.0%
! CAAATATGTTACAATTTGAG+TGG + chr5_2:57114321-57114340 None:intergenic 25.0%
!!! ATCATGTTTGTTGTTTAAAG+AGG + chr5_2:57114363-57114382 None:intergenic 25.0%
! CTAACGTATACTTTCAATAT+AGG - chr5_2:57114442-57114461 Msa0777770:intron 25.0%
! TCAACAAGATCTTTCTTTAA+GGG + chr5_2:57114529-57114548 None:intergenic 25.0%
! ATCAACAAGATCTTTCTTTA+AGG + chr5_2:57114530-57114549 None:intergenic 25.0%
! AGTTGACTGTAAATAACAAA+AGG + chr5_2:57114851-57114870 None:intergenic 25.0%
! TTCAATGTAATCAAATGTGT+CGG + chr5_2:57115090-57115109 None:intergenic 25.0%
! TCATCTTCTCAAATTGTTAT+TGG - chr5_2:57115115-57115134 Msa0777770:intron 25.0%
!! ATCTTAAAATTTTTGTAGGC+TGG - chr5_2:57115929-57115948 Msa0777770:intron 25.0%
! AATAAACTTTGTAGATTGCA+AGG - chr5_2:57116121-57116140 Msa0777770:intron 25.0%
!!! TCAATTTTAAAATCACCATG+CGG - chr5_2:57116745-57116764 Msa0777770:intron 25.0%
!! AATTTAGGATCTTCAGTTAT+GGG + chr5_2:57116828-57116847 None:intergenic 25.0%
! CTTGTTAACTGCTTATAATA+TGG - chr5_2:57116866-57116885 Msa0777770:intron 25.0%
!! ATTTTCGTTTCTCTTCTTTT+AGG + chr5_2:57116971-57116990 None:intergenic 25.0%
! ACGTAATTGAGATAAAATTG+AGG - chr5_2:57117101-57117120 Msa0777770:CDS 25.0%
! AAATCAGTGCTAGAATAATA+TGG - chr5_2:57117302-57117321 Msa0777770:intron 25.0%
!!! TTATATTATTTTTGGTGGTG+GGG - chr5_2:57117396-57117415 Msa0777770:CDS 25.0%
! ACTTATTTCCCTAAAAATTG+GGG + chr5_2:57117764-57117783 None:intergenic 25.0%
! GACTTATTTCCCTAAAAATT+GGG + chr5_2:57117765-57117784 None:intergenic 25.0%
! TGACTTATTTCCCTAAAAAT+TGG + chr5_2:57117766-57117785 None:intergenic 25.0%
!!! TATTTTGCTATTTACTGAAC+AGG - chr5_2:57117832-57117851 Msa0777770:intron 25.0%
!!! ATTTTGCTATTTACTGAACA+GGG - chr5_2:57117833-57117852 Msa0777770:intron 25.0%
!!! TTTCTAAAGCGTTTGAAATT+TGG + chr5_2:57118523-57118542 None:intergenic 25.0%
!!! AAATTTCAAACGCTTTAGAA+AGG - chr5_2:57118522-57118541 Msa0777770:intron 25.0%
! TAATCTAGCATGAAGAAATA+AGG + chr5_2:57118666-57118685 None:intergenic 25.0%
!!! TAGTCCAATTTTCTTTGAAA+TGG - chr5_2:57118715-57118734 Msa0777770:intron 25.0%
!! TTGTATGGATATTTTGCAAA+TGG + chr5_2:57118788-57118807 None:intergenic 25.0%
! TAAATAACACAGTTTGAAAG+AGG + chr5_2:57119203-57119222 None:intergenic 25.0%
! TATGTTAACCTTACAAACTA+AGG - chr5_2:57119469-57119488 Msa0777770:CDS 25.0%
! TATAGCTAAATCTCAATACA+AGG + chr5_2:57119583-57119602 None:intergenic 25.0%
! ATAGAAAAATGAGAGCAATA+AGG - chr5_2:57119604-57119623 Msa0777770:intron 25.0%
! GAATTTCCAACAAACATTAT+TGG - chr5_2:57119949-57119968 Msa0777770:intron 25.0%
! CACATTCTATATCTTGTATA+AGG + chr5_2:57120248-57120267 None:intergenic 25.0%
! TCCAAAAATGTGTATAAAAC+AGG - chr5_2:57120287-57120306 Msa0777770:intron 25.0%
!! TCCTGTTTTATACACATTTT+TGG + chr5_2:57120291-57120310 None:intergenic 25.0%
! AATGTGTATAAAACAGGAAA+TGG - chr5_2:57120293-57120312 Msa0777770:intron 25.0%
! TTTCCAAATGTATGATGTAA+TGG - chr5_2:57120382-57120401 Msa0777770:intron 25.0%
! AAACCATTACATCATACATT+TGG + chr5_2:57120388-57120407 None:intergenic 25.0%
! TGTTGAATAAACATACAGTT+TGG + chr5_2:57120875-57120894 None:intergenic 25.0%
! AAACTGTATGTTTATTCAAC+AGG - chr5_2:57120874-57120893 Msa0777770:intron 25.0%
TTCAAGAATCATCATCATCA+TGG - chr5_2:57112193-57112212 Msa0777770:three_prime_UTR 30.0%
AATCATCATCATCATGGTTT+GGG - chr5_2:57112199-57112218 Msa0777770:three_prime_UTR 30.0%
!!! GTTTTAAAAACCGAATTGGA+TGG - chr5_2:57112687-57112706 Msa0777770:intron 30.0%
AATGTAGTTGAACTATGATC+TGG - chr5_2:57112759-57112778 Msa0777770:intron 30.0%
ATGAAACAATTATGCAGTTC+AGG - chr5_2:57113065-57113084 Msa0777770:intron 30.0%
GAGCTAGAAAAAAAAAATGC+AGG - chr5_2:57113140-57113159 Msa0777770:intron 30.0%
AACAGTAAACATGAATGTGA+GGG + chr5_2:57113232-57113251 None:intergenic 30.0%
TAACAGTAAACATGAATGTG+AGG + chr5_2:57113233-57113252 None:intergenic 30.0%
GTGATTGTCACAAAAGATAA+AGG - chr5_2:57113535-57113554 Msa0777770:intron 30.0%
GATTGTCACAAAAGATAAAG+GGG - chr5_2:57113537-57113556 Msa0777770:intron 30.0%
ACATTTGTGAGCAAGAATAT+TGG - chr5_2:57113676-57113695 Msa0777770:intron 30.0%
CATTTGTGAGCAAGAATATT+GGG - chr5_2:57113677-57113696 Msa0777770:intron 30.0%
!!! TAGCTCATGAACTTTTTTCT+TGG + chr5_2:57113704-57113723 None:intergenic 30.0%
!! TGTAATGCTGTTTCTTTGTT+TGG + chr5_2:57113727-57113746 None:intergenic 30.0%
AAACAAAGAAACAGCATTAC+AGG - chr5_2:57113726-57113745 Msa0777770:intron 30.0%
AATTAAGTGTGGCACAAAAA+AGG + chr5_2:57113833-57113852 None:intergenic 30.0%
!! GCTGTCTTATTACTTACTTT+TGG - chr5_2:57114071-57114090 Msa0777770:intron 30.0%
TAAACTGAAACTAATACAGC+TGG + chr5_2:57114281-57114300 None:intergenic 30.0%
AGTTTATTTACGAACATCCT+AGG - chr5_2:57114295-57114314 Msa0777770:intron 30.0%
AATCATGTGTTCTCAAAACT+TGG - chr5_2:57114566-57114585 Msa0777770:intron 30.0%
GTATTCATAGTATGATGACA+TGG - chr5_2:57114690-57114709 Msa0777770:CDS 30.0%
AAATGTGTTCTGACATAGAA+TGG - chr5_2:57114780-57114799 Msa0777770:CDS 30.0%
AATGTGTTCTGACATAGAAT+GGG - chr5_2:57114781-57114800 Msa0777770:CDS 30.0%
TGTAACTTGGAAATTCTGAA+AGG + chr5_2:57114931-57114950 None:intergenic 30.0%
! ATGTGATTTGTAAGTTGTAC+AGG + chr5_2:57114987-57115006 None:intergenic 30.0%
GGTGAATATGTAATAAATCC+TGG + chr5_2:57115225-57115244 None:intergenic 30.0%
! CTAGAATTTTTGTCCACTTA+TGG - chr5_2:57115445-57115464 Msa0777770:intron 30.0%
ACTTAAATCTTCACCATAAG+TGG + chr5_2:57115461-57115480 None:intergenic 30.0%
TTTCTGCAAAAAACTACAGT+GGG + chr5_2:57115498-57115517 None:intergenic 30.0%
! TTTTCTGCAAAAAACTACAG+TGG + chr5_2:57115499-57115518 None:intergenic 30.0%
!! ACTTTAGAATTTGATTGAGC+TGG - chr5_2:57115567-57115586 Msa0777770:intron 30.0%
!! GTATTATAATTTCTAGCTGC+TGG - chr5_2:57115827-57115846 Msa0777770:intron 30.0%
TGCTAAAACTATTTCGTTTC+AGG - chr5_2:57116049-57116068 Msa0777770:intron 30.0%
TGAAATACATACTTGGCTAT+AGG + chr5_2:57116084-57116103 None:intergenic 30.0%
ACAATGCATTGTTATATGCA+GGG - chr5_2:57116288-57116307 Msa0777770:intron 30.0%
!!! ACCTTTTAAGGTGAATAAGT+GGG + chr5_2:57116337-57116356 None:intergenic 30.0%
ATAACAAGATACTTCAGTTC+TGG - chr5_2:57116534-57116553 Msa0777770:intron 30.0%
GGAGAGAAAATAAAAAGGTT+GGG + chr5_2:57116806-57116825 None:intergenic 30.0%
TATGGGGAGAGAAAATAAAA+AGG + chr5_2:57116811-57116830 None:intergenic 30.0%
! ATTTAGGATCTTCAGTTATG+GGG + chr5_2:57116827-57116846 None:intergenic 30.0%
! GAATTTAGGATCTTCAGTTA+TGG + chr5_2:57116829-57116848 None:intergenic 30.0%
!! TTCTCTTCTTTTAGGAAAGA+GGG + chr5_2:57116963-57116982 None:intergenic 30.0%
!! TTTCTCTTCTTTTAGGAAAG+AGG + chr5_2:57116964-57116983 None:intergenic 30.0%
! AGATTAGTTAGTCAAGCAAA+TGG + chr5_2:57116998-57117017 None:intergenic 30.0%
!!! TATATTATTTTTGGTGGTGG+GGG - chr5_2:57117397-57117416 Msa0777770:CDS 30.0%
TTGGTTAAGCAGAAACAAAT+TGG + chr5_2:57117554-57117573 None:intergenic 30.0%
!! AATTTGTTTCTGCTTAACCA+AGG - chr5_2:57117553-57117572 Msa0777770:intron 30.0%
ACTTCAGTTAAAGAAAACCT+TGG + chr5_2:57117573-57117592 None:intergenic 30.0%
ATAGATTTCTGATCTTCTTG+AGG - chr5_2:57117640-57117659 Msa0777770:intron 30.0%
! TTCAAAACCCCCAATTTTTA+GGG - chr5_2:57117753-57117772 Msa0777770:intron 30.0%
CTTATTTCCCTAAAAATTGG+GGG + chr5_2:57117763-57117782 None:intergenic 30.0%
TAAGTCAGCATATTATCTCA+AGG - chr5_2:57117779-57117798 Msa0777770:intron 30.0%
!! GAAGAATTAGTTGATGATTC+CGG - chr5_2:57118154-57118173 Msa0777770:intron 30.0%
! ATTTTTCCTCTTATGCAAAC+CGG + chr5_2:57118236-57118255 None:intergenic 30.0%
TAAGAGGAAAAATGAGAGAA+TGG - chr5_2:57118243-57118262 Msa0777770:intron 30.0%
!!! ACGTTTTATTTCATGCAAAC+TGG + chr5_2:57118293-57118312 None:intergenic 30.0%
!! AAAGTTGATGATTATGCAAG+TGG - chr5_2:57118409-57118428 Msa0777770:intron 30.0%
TCATGTACTGTAATTGAAAC+TGG - chr5_2:57118572-57118591 Msa0777770:CDS 30.0%
!! AACTGGAAATGAACTTGTTT+TGG - chr5_2:57118589-57118608 Msa0777770:CDS 30.0%
TTATTACCAGAAGAAACAGA+GGG + chr5_2:57118876-57118895 None:intergenic 30.0%
ATTAAATAGATCATCAGCCA+CGG + chr5_2:57119003-57119022 None:intergenic 30.0%
!!! TTTTTTTCTTGTTTCACTGC+AGG - chr5_2:57119120-57119139 Msa0777770:CDS 30.0%
CCTACTTCAAAAAAAAGGTT+GGG + chr5_2:57119551-57119570 None:intergenic 30.0%
ACCTACTTCAAAAAAAAGGT+TGG + chr5_2:57119552-57119571 None:intergenic 30.0%
CTAAATCTCAATACAAGGTT+GGG + chr5_2:57119578-57119597 None:intergenic 30.0%
ATCATTAAACTGATGACCAT+TGG - chr5_2:57119632-57119651 Msa0777770:intron 30.0%
TCATTAAACTGATGACCATT+GGG - chr5_2:57119633-57119652 Msa0777770:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + chr5_2:57119799-57119818 None:intergenic 30.0%
!! GTTATGCCATTTGTTTTTCT+TGG - chr5_2:57120070-57120089 Msa0777770:intron 30.0%
ATAGTGGCTATAGAATTAGT+AGG - chr5_2:57120136-57120155 Msa0777770:intron 30.0%
ATACTTTATGCCATAGCATT+TGG - chr5_2:57120416-57120435 Msa0777770:intron 30.0%
ACAAATAGAACTCATGTTTC+AGG - chr5_2:57120668-57120687 Msa0777770:intron 30.0%
! ACCATCAATTTTAGATCAGA+CGG + chr5_2:57120774-57120793 None:intergenic 30.0%
TGTTTATTCAACAGGCAATT+CGG - chr5_2:57120882-57120901 Msa0777770:intron 30.0%
GCAAAATAGTGATGAGAAGA+GGG + chr5_2:57112155-57112174 None:intergenic 35.0%
TGATTCTTGAAACACTGAAG+CGG + chr5_2:57112184-57112203 None:intergenic 35.0%
GAATCATCATCATCATGGTT+TGG - chr5_2:57112198-57112217 Msa0777770:three_prime_UTR 35.0%
ATCATCATCATCATGGTTTG+GGG - chr5_2:57112200-57112219 Msa0777770:three_prime_UTR 35.0%
AAACCTGGAACTTACAAAGT+TGG - chr5_2:57112371-57112390 Msa0777770:three_prime_UTR 35.0%
ACTTACAAAGTTGGCAGAAA+AGG - chr5_2:57112380-57112399 Msa0777770:three_prime_UTR 35.0%
TTGCACTTTCACTCTATCAA+AGG + chr5_2:57112544-57112563 None:intergenic 35.0%
CACATTTCAACCATCCAATT+CGG + chr5_2:57112700-57112719 None:intergenic 35.0%
ATGTGAACTAGTGATGTCTA+TGG - chr5_2:57112715-57112734 Msa0777770:intron 35.0%
AACTAGTGATGTCTATGGTT+AGG - chr5_2:57112720-57112739 Msa0777770:intron 35.0%
CTATGGTTAGGTTATTTGAG+TGG - chr5_2:57112732-57112751 Msa0777770:intron 35.0%
GCTTGATGTTTGTATAATCC+TGG - chr5_2:57112832-57112851 Msa0777770:intron 35.0%
TCAGACATGGCTGAAATTTA+TGG + chr5_2:57113009-57113028 None:intergenic 35.0%
GAATGTCTGTTGTTGAAGTA+GGG - chr5_2:57113116-57113135 Msa0777770:intron 35.0%
AATGTCTGTTGTTGAAGTAG+GGG - chr5_2:57113117-57113136 Msa0777770:intron 35.0%
AAGGGAATCACTAGATTATG+AGG + chr5_2:57113262-57113281 None:intergenic 35.0%
GAAAAACTGCATACATGTCA+TGG + chr5_2:57113305-57113324 None:intergenic 35.0%
!! GAATAACAGTTAGCTCTGTT+GGG + chr5_2:57113327-57113346 None:intergenic 35.0%
!! AGAATAACAGTTAGCTCTGT+TGG + chr5_2:57113328-57113347 None:intergenic 35.0%
AACAGAGCTAACTGTTATTC+TGG - chr5_2:57113327-57113346 Msa0777770:intron 35.0%
CAAAAGATAAAGGGGTTTCT+CGG - chr5_2:57113545-57113564 Msa0777770:intron 35.0%
AAAAGATAAAGGGGTTTCTC+GGG - chr5_2:57113546-57113565 Msa0777770:intron 35.0%
ATAAGAGATTGCTCCAAGTA+TGG - chr5_2:57113652-57113671 Msa0777770:intron 35.0%
AAAGAAACAGCATTACAGGA+TGG - chr5_2:57113730-57113749 Msa0777770:intron 35.0%
AACAGATGAAAAGAATGAGG+GGG + chr5_2:57113949-57113968 None:intergenic 35.0%
GAACAGATGAAAAGAATGAG+GGG + chr5_2:57113950-57113969 None:intergenic 35.0%
GGAACAGATGAAAAGAATGA+GGG + chr5_2:57113951-57113970 None:intergenic 35.0%
AGGAACAGATGAAAAGAATG+AGG + chr5_2:57113952-57113971 None:intergenic 35.0%
GAGGAGAAAATTTCGTCAAT+TGG - chr5_2:57113995-57114014 Msa0777770:intron 35.0%
!! TTACTTACTTTTGGGTCATG+AGG - chr5_2:57114080-57114099 Msa0777770:intron 35.0%
!! TACTTACTTTTGGGTCATGA+GGG - chr5_2:57114081-57114100 Msa0777770:intron 35.0%
!!! TAAGGTTTTGGGTTAAAGTG+TGG + chr5_2:57114163-57114182 None:intergenic 35.0%
CACTTTAACCCAAAACCTTA+AGG - chr5_2:57114163-57114182 Msa0777770:CDS 35.0%
ATGTGTGCATTCTTCATTCA+GGG + chr5_2:57114485-57114504 None:intergenic 35.0%
! CTTGACATCTTCATGTTTTG+TGG - chr5_2:57114731-57114750 Msa0777770:CDS 35.0%
! ACATCTTCATGTTTTGTGGT+TGG - chr5_2:57114735-57114754 Msa0777770:CDS 35.0%
GAAAACTATTCCCACAATCT+GGG + chr5_2:57114901-57114920 None:intergenic 35.0%
ACTTAGCATTATCTTCAGTC+GGG + chr5_2:57115309-57115328 None:intergenic 35.0%
CACTTAGCATTATCTTCAGT+CGG + chr5_2:57115310-57115329 None:intergenic 35.0%
!! AGTTTTAGTCTGCATGTATG+AGG - chr5_2:57115403-57115422 Msa0777770:intron 35.0%
!! GTTTTAGTCTGCATGTATGA+GGG - chr5_2:57115404-57115423 Msa0777770:intron 35.0%
ACCCTGTGACAGTATAAATT+TGG - chr5_2:57115993-57116012 Msa0777770:intron 35.0%
CCCAAATTTATACTGTCACA+GGG + chr5_2:57115997-57116016 None:intergenic 35.0%
CCCTGTGACAGTATAAATTT+GGG - chr5_2:57115994-57116013 Msa0777770:intron 35.0%
CCTGTGACAGTATAAATTTG+GGG - chr5_2:57115995-57116014 Msa0777770:intron 35.0%
GGATCAGCTAAATTCTTTAC+TGG - chr5_2:57116016-57116035 Msa0777770:intron 35.0%
AATTCTTTACTGGAAGTTGC+TGG - chr5_2:57116026-57116045 Msa0777770:intron 35.0%
GACAATGCATTGTTATATGC+AGG - chr5_2:57116287-57116306 Msa0777770:intron 35.0%
CAATGCATTGTTATATGCAG+GGG - chr5_2:57116289-57116308 Msa0777770:intron 35.0%
!!! CCTTTTAAGGTGAATAAGTG+GGG + chr5_2:57116336-57116355 None:intergenic 35.0%
!!! CACCTTTTAAGGTGAATAAG+TGG + chr5_2:57116338-57116357 None:intergenic 35.0%
! TGGCTAGAATTCACCTTTTA+AGG + chr5_2:57116349-57116368 None:intergenic 35.0%
ACTTGGATTTATGCCAGAAA+GGG + chr5_2:57116496-57116515 None:intergenic 35.0%
! CAATGATGACTATGTTGACT+TGG + chr5_2:57116513-57116532 None:intergenic 35.0%
TTCATGTAGGGTTCAGATTA+TGG - chr5_2:57116586-57116605 Msa0777770:intron 35.0%
TTATGGAGATGATAGTCGTA+TGG - chr5_2:57116603-57116622 Msa0777770:intron 35.0%
TTCCTTGCTAAAAGTCAATG+AGG - chr5_2:57116681-57116700 Msa0777770:intron 35.0%
!!! TACCTCATTGACTTTTAGCA+AGG + chr5_2:57116686-57116705 None:intergenic 35.0%
ATAATAAATGCTGCTCTCAG+TGG - chr5_2:57116709-57116728 Msa0777770:intron 35.0%
! GAAATAGAGTATTTACCGCA+TGG + chr5_2:57116763-57116782 None:intergenic 35.0%
GGGAGAGAAAATAAAAAGGT+TGG + chr5_2:57116807-57116826 None:intergenic 35.0%
AATATGGCATTGTGAAGTTC+AGG - chr5_2:57116882-57116901 Msa0777770:intron 35.0%
ACATGAAAAAAGGTCGAAGT+AGG + chr5_2:57116912-57116931 None:intergenic 35.0%
ACAAGAGTCTCAGCAAATAA+AGG + chr5_2:57117078-57117097 None:intergenic 35.0%
TGAAAAGTGAGTTGTAACTG+TGG - chr5_2:57117362-57117381 Msa0777770:CDS 35.0%
CAAAAAATTGCCTGTAACCT+AGG - chr5_2:57117452-57117471 Msa0777770:intron 35.0%
CTTCTTGAGGAAAACTATCT+CGG - chr5_2:57117653-57117672 Msa0777770:intron 35.0%
! CTTCAAAACCCCCAATTTTT+AGG - chr5_2:57117752-57117771 Msa0777770:intron 35.0%
AAGGCGAAAGTTGAAAGATT+GGG - chr5_2:57117864-57117883 Msa0777770:intron 35.0%
! GTAGAGCATGATGATGAAAT+AGG + chr5_2:57118037-57118056 None:intergenic 35.0%
! AAATTTGGAACACTGCTGTT+TGG + chr5_2:57118508-57118527 None:intergenic 35.0%
CATGAAGAAATAAGGCTTCA+TGG + chr5_2:57118658-57118677 None:intergenic 35.0%
CTATTTCCAGATTGAGTTTC+TGG + chr5_2:57118749-57118768 None:intergenic 35.0%
! GATATTTTGCAAATGGAACG+AGG + chr5_2:57118781-57118800 None:intergenic 35.0%
CTTATTACCAGAAGAAACAG+AGG + chr5_2:57118877-57118896 None:intergenic 35.0%
AACAATAGGGATTCTGACTA+TGG - chr5_2:57118921-57118940 Msa0777770:intron 35.0%
TGTCTCAACATAATAGGTAG+AGG + chr5_2:57119041-57119060 None:intergenic 35.0%
ACTTCAAAAAAAAGGTTGGG+TGG + chr5_2:57119548-57119567 None:intergenic 35.0%
!!! CCCAACCTTTTTTTTGAAGT+AGG - chr5_2:57119548-57119567 Msa0777770:CDS 35.0%
GTGGACCTACTTCAAAAAAA+AGG + chr5_2:57119556-57119575 None:intergenic 35.0%
GCTAAATCTCAATACAAGGT+TGG + chr5_2:57119579-57119598 None:intergenic 35.0%
GTTTATAGACTATGACCCAA+TGG + chr5_2:57119651-57119670 None:intergenic 35.0%
! TTTTTCACACTTGAGCTTTC+TGG + chr5_2:57119712-57119731 None:intergenic 35.0%
CAAACACATCCTTACAAAAC+CGG - chr5_2:57119752-57119771 Msa0777770:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr5_2:57119796-57119815 None:intergenic 35.0%
AACCTATTGTGATTATGCAG+AGG - chr5_2:57119997-57120016 Msa0777770:intron 35.0%
TTCCTCTGCATAATCACAAT+AGG + chr5_2:57120002-57120021 None:intergenic 35.0%
CGCGACAAAATTTACTAACT+TGG + chr5_2:57120044-57120063 None:intergenic 35.0%
!!! ACCGTGTTGCTTTTATTCTA+TGG - chr5_2:57120101-57120120 Msa0777770:intron 35.0%
GCCATAGAATAAAAGCAACA+CGG + chr5_2:57120105-57120124 None:intergenic 35.0%
! TGCTTTTATTCTATGGCCAA+TGG - chr5_2:57120108-57120127 Msa0777770:intron 35.0%
ATAGCCACTATGTTTACCAT+TGG + chr5_2:57120127-57120146 None:intergenic 35.0%
TTAGTAGGTAGTGTCATCTA+TGG - chr5_2:57120151-57120170 Msa0777770:intron 35.0%
AGGAAATGGTTGATCATGTA+TGG - chr5_2:57120307-57120326 Msa0777770:intron 35.0%
CTGCAAAATACCAAATGCTA+TGG + chr5_2:57120429-57120448 None:intergenic 35.0%
!!! GCAGTTTTTTTCCTGTGAAA+AGG - chr5_2:57120445-57120464 Msa0777770:intron 35.0%
!!! GTTTTTTTCCTGTGAAAAGG+TGG - chr5_2:57120448-57120467 Msa0777770:intron 35.0%
TCTCAATCAAAACACACACA+GGG + chr5_2:57120553-57120572 None:intergenic 35.0%
TTCTCAATCAAAACACACAC+AGG + chr5_2:57120554-57120573 None:intergenic 35.0%
TGAGAACAAAAAGAAGTCGT+TGG - chr5_2:57120568-57120587 Msa0777770:intron 35.0%
! ATAGAACTCATGTTTCAGGT+TGG - chr5_2:57120672-57120691 Msa0777770:intron 35.0%
GATTCAGATAGCAATGCAAT+AGG + chr5_2:57120940-57120959 None:intergenic 35.0%
GGCAAAATAGTGATGAGAAG+AGG + chr5_2:57112156-57112175 None:intergenic 40.0%
AAGAAGGTTTGAATGGGTAC+CGG + chr5_2:57112249-57112268 None:intergenic 40.0%
CGGAAGAAGAAGGTTTGAAT+GGG + chr5_2:57112255-57112274 None:intergenic 40.0%
ACGGAAGAAGAAGGTTTGAA+TGG + chr5_2:57112256-57112275 None:intergenic 40.0%
!! TGAAAGGTAACGGAAGAAGA+AGG + chr5_2:57112265-57112284 None:intergenic 40.0%
GTAGTTGAACTATGATCTGG+AGG - chr5_2:57112762-57112781 Msa0777770:intron 40.0%
AAACATTCAAGCTCACGAGT+TGG + chr5_2:57112927-57112946 None:intergenic 40.0%
CGAATGTCTGTTGTTGAAGT+AGG - chr5_2:57113115-57113134 Msa0777770:intron 40.0%
ATGTCTGTTGTTGAAGTAGG+GGG - chr5_2:57113118-57113137 Msa0777770:intron 40.0%
AGAGCTAACTGTTATTCTGG+CGG - chr5_2:57113330-57113349 Msa0777770:intron 40.0%
! TGACGACGTACATTTTGTAG+AGG + chr5_2:57113613-57113632 None:intergenic 40.0%
GCAATCTCTTATCTGTACAC+TGG + chr5_2:57113644-57113663 None:intergenic 40.0%
GCTCACAAATGTTCCATACT+TGG + chr5_2:57113668-57113687 None:intergenic 40.0%
!! GATGGTGACCTTGTTTCTTT+TGG - chr5_2:57113748-57113767 Msa0777770:intron 40.0%
TACCAGTGCCAAAAGAAACA+AGG + chr5_2:57113759-57113778 None:intergenic 40.0%
!! AGATCGATCGACTTGATTTG+AGG + chr5_2:57113972-57113991 None:intergenic 40.0%
!! ACTTACTTTTGGGTCATGAG+GGG - chr5_2:57114082-57114101 Msa0777770:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG - chr5_2:57114169-57114188 Msa0777770:CDS 40.0%
! ACCCAAAACCTTAAGGCATT+GGG - chr5_2:57114170-57114189 Msa0777770:CDS 40.0%
! ACCCAATGCCTTAAGGTTTT+GGG + chr5_2:57114174-57114193 None:intergenic 40.0%
! AACCCAATGCCTTAAGGTTT+TGG + chr5_2:57114175-57114194 None:intergenic 40.0%
!! ACCTTAAGGCATTGGGTTTA+TGG - chr5_2:57114177-57114196 Msa0777770:CDS 40.0%
!! CCTTAAGGCATTGGGTTTAT+GGG - chr5_2:57114178-57114197 Msa0777770:CDS 40.0%
TGTTACAATTTGAGTGGCCT+AGG + chr5_2:57114315-57114334 None:intergenic 40.0%
CATGTGTGCATTCTTCATTC+AGG + chr5_2:57114486-57114505 None:intergenic 40.0%
AGATCTTGTTGATGCAGTTG+TGG - chr5_2:57114537-57114556 Msa0777770:intron 40.0%
! TGTTCTCAAAACTTGGCTTG+AGG - chr5_2:57114573-57114592 Msa0777770:intron 40.0%
!! CATAGAATGGGTTACGTGAA+AGG - chr5_2:57114793-57114812 Msa0777770:CDS 40.0%
ATTGTTGCATTCCCAGATTG+TGG - chr5_2:57114887-57114906 Msa0777770:CDS 40.0%
TTGTTGCATTCCCAGATTGT+GGG - chr5_2:57114888-57114907 Msa0777770:CDS 40.0%
GGAAAACTATTCCCACAATC+TGG + chr5_2:57114902-57114921 None:intergenic 40.0%
! GGAAATTCTGAAAGGATGCT+TGG + chr5_2:57114923-57114942 None:intergenic 40.0%
!! TATGAAGCACTGACACTCTT+CGG - chr5_2:57115021-57115040 Msa0777770:CDS 40.0%
! GTAATCAAATGTGTCGGTGT+CGG + chr5_2:57115084-57115103 None:intergenic 40.0%
ATGCTATGAAGCACAGACAT+CGG + chr5_2:57115171-57115190 None:intergenic 40.0%
GTAATAAATCCTGGACTCAG+TGG + chr5_2:57115216-57115235 None:intergenic 40.0%
ATCCAGGTCTACAATGCTAT+TGG + chr5_2:57115260-57115279 None:intergenic 40.0%
! CAAATTTTGTCGTAGGATCC+AGG + chr5_2:57115276-57115295 None:intergenic 40.0%
! CGGAGTACAAATTTTGTCGT+AGG + chr5_2:57115283-57115302 None:intergenic 40.0%
AGTACTTACGAATGACAGCT+GGG + chr5_2:57115541-57115560 None:intergenic 40.0%
AAGTACTTACGAATGACAGC+TGG + chr5_2:57115542-57115561 None:intergenic 40.0%
CTGCTTGAGAAGAAGAAAGA+GGG + chr5_2:57115652-57115671 None:intergenic 40.0%
TCTGCTTGAGAAGAAGAAAG+AGG + chr5_2:57115653-57115672 None:intergenic 40.0%
ACATATTCCAACAGTGTCAG+TGG - chr5_2:57115672-57115691 Msa0777770:intron 40.0%
! AAACAGTTTTCGCGAGCTTT+GGG + chr5_2:57115724-57115743 None:intergenic 40.0%
! GAAAGGCTACACTTTTGTGT+TGG - chr5_2:57115744-57115763 Msa0777770:intron 40.0%
CCCCAAATTTATACTGTCAC+AGG + chr5_2:57115998-57116017 None:intergenic 40.0%
CAAGGTAGATACTTGTCTTC+TGG - chr5_2:57116139-57116158 Msa0777770:intron 40.0%
CCCCACTTATTCACCTTAAA+AGG - chr5_2:57116333-57116352 Msa0777770:intron 40.0%
AAAGGTGAATTCTAGCCACT+AGG - chr5_2:57116351-57116370 Msa0777770:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG + chr5_2:57116369-57116388 None:intergenic 40.0%
TTATGCCAGAAAGGGAAAGA+GGG + chr5_2:57116488-57116507 None:intergenic 40.0%
TTTATGCCAGAAAGGGAAAG+AGG + chr5_2:57116489-57116508 None:intergenic 40.0%
GACTTGGATTTATGCCAGAA+AGG + chr5_2:57116497-57116516 None:intergenic 40.0%
! TTTAAAGCTGCCAAGTTCCT+AGG + chr5_2:57117472-57117491 None:intergenic 40.0%
!! ACTTGGCAGCTTTAAACCAT+AGG - chr5_2:57117476-57117495 Msa0777770:intron 40.0%
AACAATGACATCACAGCCTA+TGG + chr5_2:57117495-57117514 None:intergenic 40.0%
GAAGGCGAAAGTTGAAAGAT+TGG - chr5_2:57117863-57117882 Msa0777770:intron 40.0%
! TTTCCTCTTGTCTGAAATGC+CGG + chr5_2:57118176-57118195 None:intergenic 40.0%
GAGGAAAAATGACAGAACAG+AGG - chr5_2:57118189-57118208 Msa0777770:intron 40.0%
! TCCTTAGATGATGTTTCTGC+CGG - chr5_2:57118214-57118233 Msa0777770:intron 40.0%
GAGGAAAAATGAGAGAATGG+AGG - chr5_2:57118246-57118265 Msa0777770:intron 40.0%
ACTGGTAGAAACGTCATCAA+TGG + chr5_2:57118275-57118294 None:intergenic 40.0%
!! GTTTGGTGCAGAACTTCTAT+TGG + chr5_2:57118491-57118510 None:intergenic 40.0%
TGCACTTCTCTTCTCATAAG+TGG - chr5_2:57118545-57118564 Msa0777770:CDS 40.0%
AGTATGTGAAGGAGGAGAAA+AGG - chr5_2:57118961-57118980 Msa0777770:intron 40.0%
CTCAGCTGTCTCAACATAAT+AGG + chr5_2:57119047-57119066 None:intergenic 40.0%
GGGGAAGATCACATTAAACT+TGG - chr5_2:57119075-57119094 Msa0777770:intron 40.0%
!! GGTGACATCCTTAGTTTGTA+AGG + chr5_2:57119480-57119499 None:intergenic 40.0%
!! ACCTCTGAAGTTAGGAATCT+GGG - chr5_2:57119497-57119516 Msa0777770:CDS 40.0%
AATCTCAATACAAGGTTGGG+TGG + chr5_2:57119575-57119594 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGTGTT+TGG + chr5_2:57119754-57119773 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG + chr5_2:57119855-57119874 None:intergenic 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG + chr5_2:57119856-57119875 None:intergenic 40.0%
CTAACCAAAGGTCGCAATTT+AGG - chr5_2:57119898-57119917 Msa0777770:intron 40.0%
TGGAAATTCCGCCTTAATTG+CGG + chr5_2:57119938-57119957 None:intergenic 40.0%
ATGGCCAATGGTAAACATAG+TGG - chr5_2:57120120-57120139 Msa0777770:intron 40.0%
TAGTGTCATCTATGGTGACT+GGG - chr5_2:57120159-57120178 Msa0777770:intron 40.0%
ATGTTGTCAAATTGTTGCCG+TGG + chr5_2:57120217-57120236 None:intergenic 40.0%
! CAACATATCCACCTTTTCAC+AGG + chr5_2:57120459-57120478 None:intergenic 40.0%
CTGTGAAAAGGTGGATATGT+TGG - chr5_2:57120457-57120476 Msa0777770:intron 40.0%
! GATCCTCTTGTTTCCATTGT+AGG - chr5_2:57120633-57120652 Msa0777770:intron 40.0%
TTTACTTCGTACGCCTACAA+TGG + chr5_2:57120649-57120668 None:intergenic 40.0%
! GCCGTCTGATCTAAAATTGA+TGG - chr5_2:57120770-57120789 Msa0777770:intron 40.0%
TGAAACACTGAAGCGGAAAG+CGG + chr5_2:57112177-57112196 None:intergenic 45.0%
!! TTTGAATGGGTACCGGAAAG+AGG + chr5_2:57112242-57112261 None:intergenic 45.0%
CTGCCAACTTTGTAAGTTCC+AGG + chr5_2:57112377-57112396 None:intergenic 45.0%
AGTTGTTACGTTATGCCGAG+TGG - chr5_2:57112616-57112635 Msa0777770:three_prime_UTR 45.0%
GCTAAGGCGTAAAAACCACT+CGG + chr5_2:57112634-57112653 None:intergenic 45.0%
!! TGCTGGCTCGATGTTAAGTT+TGG - chr5_2:57112788-57112807 Msa0777770:intron 45.0%
!! AGTCTTGTTTGAGTGTCTCC+AGG + chr5_2:57112853-57112872 None:intergenic 45.0%
!!! TTCTGGCGGACTTTTCAGAA+TGG - chr5_2:57113344-57113363 Msa0777770:intron 45.0%
!! GACCTTGTTTCTTTTGGCAC+TGG - chr5_2:57113754-57113773 Msa0777770:intron 45.0%
TCAAGTCGATCGATCTCTTG+AGG - chr5_2:57113976-57113995 Msa0777770:intron 45.0%
TGGTGTCTCTCTCACTTGTT+AGG + chr5_2:57114143-57114162 None:intergenic 45.0%
CCCATAAACCCAATGCCTTA+AGG + chr5_2:57114181-57114200 None:intergenic 45.0%
TGGTGCACTTTACAAGTGAG+AGG + chr5_2:57114205-57114224 None:intergenic 45.0%
TCCCCTTCTCTAAGCAATGT+GGG - chr5_2:57114227-57114246 Msa0777770:intron 45.0%
TCCCACATTGCTTAGAGAAG+GGG + chr5_2:57114231-57114250 None:intergenic 45.0%
GTCCCACATTGCTTAGAGAA+GGG + chr5_2:57114232-57114251 None:intergenic 45.0%
AGTCCCACATTGCTTAGAGA+AGG + chr5_2:57114233-57114252 None:intergenic 45.0%
TGAAGAATGCACACATGTGC+TGG - chr5_2:57114489-57114508 Msa0777770:intron 45.0%
TGCTATTGGTCACAGAACAC+TGG + chr5_2:57115246-57115265 None:intergenic 45.0%
GACCAATAGCATTGTAGACC+TGG - chr5_2:57115255-57115274 Msa0777770:intron 45.0%
CATTATCTTCAGTCGGGACT+CGG + chr5_2:57115303-57115322 None:intergenic 45.0%
!! GCTGGCTTTATACCTTGAAC+TGG - chr5_2:57115585-57115604 Msa0777770:intron 45.0%
ATTCCAACAGTGTCAGTGGA+AGG - chr5_2:57115676-57115695 Msa0777770:intron 45.0%
! AACAGTTTTCGCGAGCTTTG+GGG + chr5_2:57115723-57115742 None:intergenic 45.0%
! CAAACAGTTTTCGCGAGCTT+TGG + chr5_2:57115725-57115744 None:intergenic 45.0%
GCTCGCGAAAACTGTTTGAA+AGG - chr5_2:57115727-57115746 Msa0777770:intron 45.0%
TGTGTTGGAATCTGTGCATC+TGG - chr5_2:57115759-57115778 Msa0777770:intron 45.0%
AATATGCAGGACAGACGTCT+AGG - chr5_2:57115880-57115899 Msa0777770:intron 45.0%
ATATGCAGGACAGACGTCTA+GGG - chr5_2:57115881-57115900 Msa0777770:intron 45.0%
TGCCAACTTAGCTATGCTCA+CGG + chr5_2:57116265-57116284 None:intergenic 45.0%
! TGAGCATAGCTAAGTTGGCA+GGG - chr5_2:57116265-57116284 Msa0777770:intron 45.0%
GAGGGCAGAAAAACAAGAGA+TGG + chr5_2:57116470-57116489 None:intergenic 45.0%
TTGCCTGTAACCTAGGAACT+TGG - chr5_2:57117459-57117478 Msa0777770:intron 45.0%
CATAATGCCTCGCTTCCATA+GGG + chr5_2:57118112-57118131 None:intergenic 45.0%
ACATAATGCCTCGCTTCCAT+AGG + chr5_2:57118113-57118132 None:intergenic 45.0%
! TATGGAAGCGAGGCATTATG+TGG - chr5_2:57118112-57118131 Msa0777770:intron 45.0%
ATTCCGGCATTTCAGACAAG+AGG - chr5_2:57118170-57118189 Msa0777770:intron 45.0%
ACCGGCAGAAACATCATCTA+AGG + chr5_2:57118218-57118237 None:intergenic 45.0%
!! TTTCTGCCGGTTTGCATAAG+AGG - chr5_2:57118227-57118246 Msa0777770:intron 45.0%
TGCAAAAGCAGACATATCCC+TGG - chr5_2:57118312-57118331 Msa0777770:intron 45.0%
! TGGTGGTGAGTGTATCAGAT+CGG + chr5_2:57118348-57118367 None:intergenic 45.0%
TTGCAGCCAGAAACTCAATC+TGG - chr5_2:57118740-57118759 Msa0777770:intron 45.0%
! TCACTTCCCTCTGTTTCTTC+TGG - chr5_2:57118867-57118886 Msa0777770:intron 45.0%
TGAGACAGCTGAGTATGTGA+AGG - chr5_2:57118950-57118969 Msa0777770:intron 45.0%
TGAGACAGCTGAGTATGTGA+AGG - chr5_2:57118950-57118969 Msa0777770:intron 45.0%
GAGACAGCTGAGTATGTGAA+GGG - chr5_2:57118951-57118970 Msa0777770:intron 45.0%
AGACAGCTGAGTATGTGAAG+GGG - chr5_2:57118952-57118971 Msa0777770:intron 45.0%
TCACTGCAGGCAAAAAAACG+AGG - chr5_2:57119133-57119152 Msa0777770:CDS 45.0%
!! AGGATGTCACCTCTGAAGTT+AGG - chr5_2:57119489-57119508 Msa0777770:CDS 45.0%
!! CACCTCTGAAGTTAGGAATC+TGG - chr5_2:57119496-57119515 Msa0777770:CDS 45.0%
AAGTTAGGAATCTGGGCTTG+AGG - chr5_2:57119504-57119523 Msa0777770:CDS 45.0%
TTGAGGCATGAACAATAGGC+AGG - chr5_2:57119521-57119540 Msa0777770:CDS 45.0%
GATGGTTCATGACACGGTAT+TGG + chr5_2:57119685-57119704 None:intergenic 45.0%
GGCATAGATGGTTCATGACA+CGG + chr5_2:57119691-57119710 None:intergenic 45.0%
! CTTGAGCTTTCTGGCATAGA+TGG + chr5_2:57119703-57119722 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr5_2:57119764-57119783 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr5_2:57119761-57119780 Msa0777770:intron 45.0%
! AGAGTGTTATCTATCCGACG+TGG - chr5_2:57119817-57119836 Msa0777770:intron 45.0%
GAGTGTTATCTATCCGACGT+GGG - chr5_2:57119818-57119837 Msa0777770:intron 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG + chr5_2:57119854-57119873 None:intergenic 45.0%
!! CCTTCATTGTGTTGGCTTTG+AGG + chr5_2:57119857-57119876 None:intergenic 45.0%
CCTCAAAGCCAACACAATGA+AGG - chr5_2:57119854-57119873 Msa0777770:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG - chr5_2:57119860-57119879 Msa0777770:intron 45.0%
CTCCAACACCTTCATTGTGT+TGG + chr5_2:57119865-57119884 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr5_2:57119863-57119882 Msa0777770:intron 45.0%
CTGCAATGAAGGCTAACCAA+AGG - chr5_2:57119886-57119905 Msa0777770:intron 45.0%
GTAGTGTCATCTATGGTGAC+TGG - chr5_2:57120158-57120177 Msa0777770:intron 45.0%
GGATATGTTGGCATTCTGCT+TGG - chr5_2:57120469-57120488 Msa0777770:intron 45.0%
GACTCAACTAAGCTGCAGTT+GGG + chr5_2:57120529-57120548 None:intergenic 45.0%
AGACTCAACTAAGCTGCAGT+TGG + chr5_2:57120530-57120549 None:intergenic 45.0%
TCAAGCTACCACTCAGATAC+AGG + chr5_2:57120611-57120630 None:intergenic 45.0%
GTATCTGAGTGGTAGCTTGA+AGG - chr5_2:57120611-57120630 Msa0777770:intron 45.0%
ACGCCTACAATGGAAACAAG+AGG + chr5_2:57120639-57120658 None:intergenic 45.0%
! GGCTGACATGTGAAGGTTTT+TGG - chr5_2:57120693-57120712 Msa0777770:intron 45.0%
!!! CATGTGAAGGTTTTTGGCAC+TGG - chr5_2:57120699-57120718 Msa0777770:intron 45.0%
TGCAGTTGCTTCCAATTCGA+GGG + chr5_2:57120910-57120929 None:intergenic 45.0%
TTGCAGTTGCTTCCAATTCG+AGG + chr5_2:57120911-57120930 None:intergenic 45.0%
TGAATCCTCTCGACACCTTA+TGG - chr5_2:57120954-57120973 Msa0777770:five_prime_UTR 45.0%
!!! CAATATTATTATATTATTTT+TGG - chr5_2:57117388-57117407 Msa0777770:CDS 5.0%
CTATGATCTGGAGGTCTTGC+TGG - chr5_2:57112771-57112790 Msa0777770:intron 50.0%
CATCTGGCAAAGGTCAGACA+TGG + chr5_2:57113022-57113041 None:intergenic 50.0%
! TCTGTTGTTGTTCGCGCATC+TGG + chr5_2:57113038-57113057 None:intergenic 50.0%
!! GGCGGACTTTTCAGAATGGA+CGG - chr5_2:57113348-57113367 Msa0777770:intron 50.0%
TGAAAAGAATGAGGGGGACG+TGG + chr5_2:57113943-57113962 None:intergenic 50.0%
ATTGCTTAGAGAAGGGGAGG+TGG + chr5_2:57114225-57114244 None:intergenic 50.0%
CACATTGCTTAGAGAAGGGG+AGG + chr5_2:57114228-57114247 None:intergenic 50.0%
CTCCCCTTCTCTAAGCAATG+TGG - chr5_2:57114226-57114245 Msa0777770:intron 50.0%
! AAGACAGGGTGTCAGACACA+GGG + chr5_2:57115058-57115077 None:intergenic 50.0%
! AAAGACAGGGTGTCAGACAC+AGG + chr5_2:57115059-57115078 None:intergenic 50.0%
TAGAGTCATCCACTGAGTCC+AGG - chr5_2:57115204-57115223 Msa0777770:intron 50.0%
TACCTTGAACTGGCATCAGC+TGG - chr5_2:57115595-57115614 Msa0777770:intron 50.0%
TATGCAGGACAGACGTCTAG+GGG - chr5_2:57115882-57115901 Msa0777770:intron 50.0%
CCAACTTAGCTATGCTCACG+GGG + chr5_2:57116263-57116282 None:intergenic 50.0%
GCCAACTTAGCTATGCTCAC+GGG + chr5_2:57116264-57116283 None:intergenic 50.0%
! GTGAGCATAGCTAAGTTGGC+AGG - chr5_2:57116264-57116283 Msa0777770:intron 50.0%
GCATTGTTATATGCAGGGGC+CGG - chr5_2:57116293-57116312 Msa0777770:intron 50.0%
CATTGTTATATGCAGGGGCC+GGG - chr5_2:57116294-57116313 Msa0777770:intron 50.0%
ATTGTTATATGCAGGGGCCG+GGG - chr5_2:57116295-57116314 Msa0777770:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr5_2:57116329-57116348 None:intergenic 50.0%
TTCTGCCCTCTTTCCCTTTC+TGG - chr5_2:57116480-57116499 Msa0777770:CDS 50.0%
! CGTATGGTTTGTGTCATCCC+AGG - chr5_2:57116619-57116638 Msa0777770:intron 50.0%
! ATGGTTTGTGTCATCCCAGG+AGG - chr5_2:57116622-57116641 Msa0777770:intron 50.0%
!!! TTATTTTTGGTGGTGGGGGC+AGG - chr5_2:57117401-57117420 Msa0777770:CDS 50.0%
!!! TATTTTTGGTGGTGGGGGCA+GGG - chr5_2:57117402-57117421 Msa0777770:CDS 50.0%
CTGCCAAGTTCCTAGGTTAC+AGG + chr5_2:57117465-57117484 None:intergenic 50.0%
ACTGAACAGGGACTGACAGA+AGG - chr5_2:57117845-57117864 Msa0777770:intron 50.0%
GAAACAGCCACATCACCCTA+TGG - chr5_2:57118094-57118113 Msa0777770:intron 50.0%
!! AGATCGGACAGAAGCATCCA+GGG + chr5_2:57118332-57118351 None:intergenic 50.0%
TACACTCACCACCAGCTTCA+AGG - chr5_2:57118354-57118373 Msa0777770:intron 50.0%
GACAGCTGAGTATGTGAAGG+AGG - chr5_2:57118953-57118972 Msa0777770:intron 50.0%
!! GCAAAAAAACGAGGCACTGC+TGG - chr5_2:57119142-57119161 Msa0777770:CDS 50.0%
!! GGCACTGCTGGTTCTATTCA+CGG - chr5_2:57119154-57119173 Msa0777770:CDS 50.0%
GCCCAGATTCCTAACTTCAG+AGG + chr5_2:57119501-57119520 None:intergenic 50.0%
GGGCTTGAGGCATGAACAAT+AGG - chr5_2:57119517-57119536 Msa0777770:CDS 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr5_2:57119766-57119785 Msa0777770:intron 50.0%
GTCGCCTAAATTGCGACCTT+TGG + chr5_2:57119905-57119924 None:intergenic 50.0%
AGGTCGCAATTTAGGCGACT+AGG - chr5_2:57119906-57119925 Msa0777770:intron 50.0%
GGTCGCAATTTAGGCGACTA+GGG - chr5_2:57119907-57119926 Msa0777770:intron 50.0%
GTCGCAATTTAGGCGACTAG+GGG - chr5_2:57119908-57119927 Msa0777770:intron 50.0%
AATCCTCCTTGCATATGCCG+TGG - chr5_2:57120186-57120205 Msa0777770:intron 50.0%
ATACAGGTGTGTGTGGACAG+AGG + chr5_2:57120595-57120614 None:intergenic 50.0%
CACTCAGATACAGGTGTGTG+TGG + chr5_2:57120602-57120621 None:intergenic 50.0%
CACACACACCTGTATCTGAG+TGG - chr5_2:57120600-57120619 Msa0777770:intron 50.0%
!! TCAGGTTGGCTGACATGTGA+AGG - chr5_2:57120686-57120705 Msa0777770:intron 50.0%
GCAATTCGGATCCCTCGAAT+TGG - chr5_2:57120896-57120915 Msa0777770:CDS 50.0%
!! CTTGACCATAAGGTGTCGAG+AGG + chr5_2:57120962-57120981 None:intergenic 50.0%
CTCTCGACACCTTATGGTCA+AGG - chr5_2:57120960-57120979 Msa0777770:five_prime_UTR 50.0%
TGGCGGTAACCTTGACCATA+AGG + chr5_2:57120972-57120991 None:intergenic 50.0%
TTCCCCGTCGATCCTCTTTC+CGG - chr5_2:57112227-57112246 Msa0777770:three_prime_UTR 55.0%
TACCGGAAAGAGGATCGACG+GGG + chr5_2:57112232-57112251 None:intergenic 55.0%
GTACCGGAAAGAGGATCGAC+GGG + chr5_2:57112233-57112252 None:intergenic 55.0%
! GGTACCGGAAAGAGGATCGA+CGG + chr5_2:57112234-57112253 None:intergenic 55.0%
TAAACCCGTTTGCCTGACGG+GGG + chr5_2:57112660-57112679 None:intergenic 55.0%
CTAAACCCGTTTGCCTGACG+GGG + chr5_2:57112661-57112680 None:intergenic 55.0%
CCTAAACCCGTTTGCCTGAC+GGG + chr5_2:57112662-57112681 None:intergenic 55.0%
CCCTAAACCCGTTTGCCTGA+CGG + chr5_2:57112663-57112682 None:intergenic 55.0%
! CCGTCAGGCAAACGGGTTTA+GGG - chr5_2:57112660-57112679 Msa0777770:three_prime_UTR 55.0%
GTTGTTCGCGCATCTGGCAA+AGG + chr5_2:57113032-57113051 None:intergenic 55.0%
!! GTCGGTGTCGGACAAAGACA+GGG + chr5_2:57115072-57115091 None:intergenic 55.0%
!! TGTCGGTGTCGGACAAAGAC+AGG + chr5_2:57115073-57115092 None:intergenic 55.0%
GTCCAGCTGATGCCAGTTCA+AGG + chr5_2:57115600-57115619 None:intergenic 55.0%
GCTCCTTCCACTGACACTGT+TGG + chr5_2:57115682-57115701 None:intergenic 55.0%
CCCCGTGAGCATAGCTAAGT+TGG - chr5_2:57116260-57116279 Msa0777770:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr5_2:57116327-57116346 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr5_2:57116328-57116347 None:intergenic 55.0%
GTTTGCATGTCGCTCCTCCT+GGG + chr5_2:57116639-57116658 None:intergenic 55.0%
CTCGCTTCCATAGGGTGATG+TGG + chr5_2:57118104-57118123 None:intergenic 55.0%
CACATCACCCTATGGAAGCG+AGG - chr5_2:57118102-57118121 Msa0777770:intron 55.0%
! GGAAGCGAGGCATTATGTGG+TGG - chr5_2:57118115-57118134 Msa0777770:intron 55.0%
!! CAGATCGGACAGAAGCATCC+AGG + chr5_2:57118333-57118352 None:intergenic 55.0%
CTCACCACCAGCTTCAAGGA+TGG - chr5_2:57118358-57118377 Msa0777770:intron 55.0%
AGTGCCATCCTTGAAGCTGG+TGG + chr5_2:57118365-57118384 None:intergenic 55.0%
ACCAGCTTCAAGGATGGCAC+TGG - chr5_2:57118364-57118383 Msa0777770:intron 55.0%
GCGAAAGCAAAGAGAAGCCG+TGG - chr5_2:57118983-57119002 Msa0777770:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG + chr5_2:57119774-57119793 None:intergenic 55.0%
! GGGTGGATTTAGTCCCACGT+CGG + chr5_2:57119834-57119853 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + chr5_2:57119851-57119870 None:intergenic 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG - chr5_2:57119875-57119894 Msa0777770:intron 55.0%
GCAATTTAGGCGACTAGGGG+CGG - chr5_2:57119911-57119930 Msa0777770:intron 55.0%
ATGCCACGGCATATGCAAGG+AGG + chr5_2:57120192-57120211 None:intergenic 55.0%
GCAATGCCACGGCATATGCA+AGG + chr5_2:57120195-57120214 None:intergenic 55.0%
CATATGCCGTGGCATTGCCA+CGG - chr5_2:57120197-57120216 Msa0777770:intron 55.0%
TTGTTGCCGTGGCAATGCCA+CGG + chr5_2:57120206-57120225 None:intergenic 55.0%
! CCCGTCAGGCAAACGGGTTT+AGG - chr5_2:57112659-57112678 Msa0777770:three_prime_UTR 60.0%
TTTGGGTCATGAGGGGAGCC+CGG - chr5_2:57114089-57114108 Msa0777770:intron 60.0%
CCCAATGTGAGTGATCCCCC+GGG + chr5_2:57114110-57114129 None:intergenic 60.0%
CCCGGGGGATCACTCACATT+GGG - chr5_2:57114107-57114126 Msa0777770:CDS 60.0%
GCCCAATGTGAGTGATCCCC+CGG + chr5_2:57114111-57114130 None:intergenic 60.0%
GGTTTGCATGTCGCTCCTCC+TGG + chr5_2:57116640-57116659 None:intergenic 60.0%
GCCAGTGCCATCCTTGAAGC+TGG + chr5_2:57118368-57118387 None:intergenic 60.0%
CTAGGGGCGGACCGCAATTA+AGG - chr5_2:57119924-57119943 Msa0777770:intron 60.0%
! TGCCTGACGGGGGCATGCTA+AGG + chr5_2:57112650-57112669 None:intergenic 65.0%
GCATGCCCCCGTCAGGCAAA+CGG - chr5_2:57112652-57112671 Msa0777770:three_prime_UTR 65.0%
CATGCCCCCGTCAGGCAAAC+GGG - chr5_2:57112653-57112672 Msa0777770:three_prime_UTR 65.0%
TTGGGTCATGAGGGGAGCCC+GGG - chr5_2:57114090-57114109 Msa0777770:intron 65.0%
GCCCGGGGGATCACTCACAT+TGG - chr5_2:57114106-57114125 Msa0777770:CDS 65.0%
GGGGCGGACCGCAATTAAGG+CGG - chr5_2:57119927-57119946 Msa0777770:intron 65.0%
CGCCTTAGCATGCCCCCGTC+AGG - chr5_2:57112645-57112664 Msa0777770:three_prime_UTR 70.0%
TGGGTCATGAGGGGAGCCCG+GGG - chr5_2:57114091-57114110 Msa0777770:intron 70.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr5_2:57116315-57116334 None:intergenic 70.0%
GGGTCATGAGGGGAGCCCGG+GGG - chr5_2:57114092-57114111 Msa0777770:intron 75.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr5_2:57116307-57116326 Msa0777770:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 57112134 57121000 57112134 ID=Msa0777770;Name=Msa0777770
chr5_2 mRNA 57112134 57121000 57112134 ID=Msa0777770-mRNA-1;Parent=Msa0777770;Name=Msa0777770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|0.85|0.8|15|533|570
chr5_2 exon 57112134 57112277 57112134 ID=Msa0777770-mRNA-1:exon:16894;Parent=Msa0777770-mRNA-1
chr5_2 exon 57112299 57112685 57112299 ID=Msa0777770-mRNA-1:exon:16893;Parent=Msa0777770-mRNA-1
chr5_2 exon 57113940 57113992 57113940 ID=Msa0777770-mRNA-1:exon:16892;Parent=Msa0777770-mRNA-1
chr5_2 exon 57114103 57114205 57114103 ID=Msa0777770-mRNA-1:exon:16891;Parent=Msa0777770-mRNA-1
chr5_2 exon 57114327 57114388 57114327 ID=Msa0777770-mRNA-1:exon:16890;Parent=Msa0777770-mRNA-1
chr5_2 exon 57114591 57115102 57114591 ID=Msa0777770-mRNA-1:exon:16889;Parent=Msa0777770-mRNA-1
chr5_2 exon 57116368 57116539 57116368 ID=Msa0777770-mRNA-1:exon:16888;Parent=Msa0777770-mRNA-1
chr5_2 exon 57117043 57117129 57117043 ID=Msa0777770-mRNA-1:exon:16887;Parent=Msa0777770-mRNA-1
chr5_2 exon 57117354 57117462 57117354 ID=Msa0777770-mRNA-1:exon:16886;Parent=Msa0777770-mRNA-1
chr5_2 exon 57117583 57117629 57117583 ID=Msa0777770-mRNA-1:exon:16885;Parent=Msa0777770-mRNA-1
chr5_2 exon 57118540 57118670 57118540 ID=Msa0777770-mRNA-1:exon:16884;Parent=Msa0777770-mRNA-1
chr5_2 exon 57119118 57119200 57119118 ID=Msa0777770-mRNA-1:exon:16883;Parent=Msa0777770-mRNA-1
chr5_2 exon 57119343 57119607 57119343 ID=Msa0777770-mRNA-1:exon:16882;Parent=Msa0777770-mRNA-1
chr5_2 exon 57120733 57120786 57120733 ID=Msa0777770-mRNA-1:exon:16881;Parent=Msa0777770-mRNA-1
chr5_2 exon 57120886 57121000 57120886 ID=Msa0777770-mRNA-1:exon:16880;Parent=Msa0777770-mRNA-1
chr5_2 five_prime_UTR 57120923 57121000 57120923 ID=Msa0777770-mRNA-1:five_prime_utr;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57120886 57120922 57120886 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57120733 57120786 57120733 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57119343 57119607 57119343 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57119118 57119200 57119118 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57118540 57118670 57118540 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57117583 57117629 57117583 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57117354 57117462 57117354 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57117043 57117129 57117043 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57116368 57116539 57116368 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57114591 57115102 57114591 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57114327 57114388 57114327 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57114103 57114205 57114103 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 CDS 57113942 57113992 57113942 ID=Msa0777770-mRNA-1:cds;Parent=Msa0777770-mRNA-1
chr5_2 three_prime_UTR 57113940 57113941 57113940 ID=Msa0777770-mRNA-1:three_prime_utr;Parent=Msa0777770-mRNA-1
chr5_2 three_prime_UTR 57112299 57112685 57112299 ID=Msa0777770-mRNA-1:three_prime_utr;Parent=Msa0777770-mRNA-1
chr5_2 three_prime_UTR 57112134 57112277 57112134 ID=Msa0777770-mRNA-1:three_prime_utr;Parent=Msa0777770-mRNA-1
Gene Sequence

>Msa0777770

ATGGTTTGGGGTCTCTTCCCCGTCGATCCTCTTTCCGGTGAAGATAATTACTACATTTTCAAACCTGGAACTTACAAAGTTGGCAGAAAAGGTTGCGATGTGATTGTCACAAAAGATAAAGGGGTTTCTCGGGTTCATGCAGAAATAGTTGTTAATACAATGAACATGTTAAATCCTCTACAAAATGTACGTCGTCATTTGTCTTCCAGTGTACAGATAAGAGATTGCTCCAAGTATGGAACATTTGTGAGCAAGAATATTGGGTCCAAGAAAAAAGTTCATGAGCTACCAAACAAAGAAACAGCATTACAGGATGGTGACCTTGTTTCTTTTGGCACTGGTAGTGCAACCTACAAGTTTTGCCACGTCCCCCTCATTCTTTTCATCTGTTCCTCAAATCAAGTCGATCGATCTCTTGAGGAGAAAATTTCGTCAATTGGTGCTAGTATTTCTCATACCCTGAATGAAGAATGCACACATGTGCTGGTAGATCAACTCATGCCCTTAAAGAAAGATCTTGTTGATGCAGTTGTGGCAAAAAAATCATGTGTTCTCAAAACTTGGCTTGAGTTTTTTGCAGAAAAGAACATTAGCAATGAAATTCCCAGCTGTCATTCACATATTCCAACAGTGTCAGTGGAAGGAGCATCTATTAGAGTTGCTGACCCCAAAGCTCGCGAAAACTGTTTGAAAGGCTACACTTTTGTGTTGGAATCTGTGCATCTGTATAAATTTGGGGATCAGCTAAATTCTTTACTGGAAGTTGCTGGTGCTAAAACTATTTCGTTTCAGGAATTCTCTTCCTATAGCCAAGGTTCAGATTATGGAGATGATAGTCGTATGGTTTGTGTCATCCCAGGAGGAGCGACATGCAAACCTGATTTCAATAAATTATTAAGTTCCTTGCTAAAAGTCAATGAGGTAGATATAATAAATGCTGCTCTCAGTGGAGATTTAGATCGATCAATTTTAAAATCACCATGCGTGCCTATTTCATCATCATGCTCTACAGACGAGACAATTGTAGCAGATTCAGATACTGAAGTTGAAACAGCCACATCACCCTATGGAAGCGAGGCATTATGTGGTGGCAATAATGTAAAAACAGAAGAATTAGTTGATGATTCCGGCATTTCAGACAAGAGGAAAAATGACAGAACAGAGGCTTCCTTAGATGATGTTTCTGCCGGTTTGCATAAGAGGAAAAATGAGAGAATGGAGGCATCCATTGATGACGTTTCTACCAGTTTGCATGAAATAAAACGTGCAAAAGCAGACATATCCCTGGATGCTTCTGTCCGATCTGATACACTCACCACCAGCTTCAAGGATGGCACTGGCGATATCAAAGTGAAGAAAGACAAAGTTGATGATTATGCAAGTGGAAATTCAGATGTTATTTACAGCCAAAATTTAATTGTTCGAGATATAAACAGACTTACCAATAGAAGTTCTGCACCAAACAGCAGTGTTCCAAATTTCAAACGCTTTAGAAAGCCAGAAACTCAATCTGGAAATAGTTTCAACAACCTCGTTCCATTTGCAAAATATCCATACAAGGATTCTGACTATGGAAATGATGAGACAGCTGAGTATGTGAAGGAGGAGAAAAGGCGAAAGCAAAGAGAAGCCGTGGCTGATGATCTATTTAATAATCAGAAGGCAAAAAAACGAGGCACTGCTGGTTCTATTCACGGCATTCTTACTAGATGA

Protein sequence

>Msa0777770

MVWGLFPVDPLSGEDNYYIFKPGTYKVGRKGCDVIVTKDKGVSRVHAEIVVNTMNMLNPLQNVRRHLSSSVQIRDCSKYGTFVSKNIGSKKKVHELPNKETALQDGDLVSFGTGSATYKFCHVPLILFICSSNQVDRSLEEKISSIGASISHTLNEECTHVLVDQLMPLKKDLVDAVVAKKSCVLKTWLEFFAEKNISNEIPSCHSHIPTVSVEGASIRVADPKARENCLKGYTFVLESVHLYKFGDQLNSLLEVAGAKTISFQEFSSYSQGSDYGDDSRMVCVIPGGATCKPDFNKLLSSLLKVNEVDIINAALSGDLDRSILKSPCVPISSSCSTDETIVADSDTEVETATSPYGSEALCGGNNVKTEELVDDSGISDKRKNDRTEASLDDVSAGLHKRKNERMEASIDDVSTSLHEIKRAKADISLDASVRSDTLTTSFKDGTGDIKVKKDKVDDYASGNSDVIYSQNLIVRDINRLTNRSSAPNSSVPNFKRFRKPETQSGNSFNNLVPFAKYPYKDSDYGNDETAEYVKEEKRRKQREAVADDLFNNQKAKKRGTAGSIHGILTR*