AlfalfaGEDB | Msa0777810

M. sativa cultivar zhongmu-4 / Msa0777810

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777810	sp\|Q9FGV1\|ARFH_ARATH	68.765	826	220	14	1	812	1	802	0.0	1074

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777810	G7KFN6	98.930	841	9	0	1	841	1	841	0.0	1722

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TFs/TRs:

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Gene ID	Type	Classification
Msa0777810	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0721310	Msa0777810	0.856742	2.619249e-62	-8.615850e-47
Msa0777810	Msa0777830	0.966545	4.594134e-126	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777810	MtrunA17_Chr5g0433301	98.930	841	9	0	1	841	1	841	0.0	1722
Msa0777810	MtrunA17_Chr3g0109391	82.181	853	136	12	1	841	1	849	0.0	1363
Msa0777810	MtrunA17_Chr2g0285461	58.361	915	300	20	1	841	1	908	0.0	920
Msa0777810	MtrunA17_Chr8g0376771	75.806	496	104	9	1	490	1	486	0.0	741
Msa0777810	MtrunA17_Chr4g0070181	66.262	412	129	8	16	422	15	421	8.60e-171	524
Msa0777810	MtrunA17_Chr4g0070181	50.459	109	54	0	695	803	974	1082	2.79e-29	125
Msa0777810	MtrunA17_Chr1g0156321	68.120	367	113	3	16	381	35	398	3.14e-168	509
Msa0777810	MtrunA17_Chr1g0156321	41.060	151	71	3	670	820	727	859	6.19e-26	114
Msa0777810	MtrunA17_Chr2g0301251	58.628	481	169	11	1	467	1	465	1.53e-165	510
Msa0777810	MtrunA17_Chr2g0301251	59.341	91	37	0	717	807	988	1078	8.71e-30	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777810	AT5G37020.1	68.765	826	220	14	1	812	1	802	0.0	1074
Msa0777810	AT5G37020.2	69.009	797	209	15	1	783	1	773	0.0	1034
Msa0777810	AT5G37020.3	66.392	729	209	13	98	812	1	707	0.0	891
Msa0777810	AT1G19220.1	57.631	498	193	10	1	487	1	491	2.22e-169	520
Msa0777810	AT1G19220.1	55.446	101	45	0	717	817	960	1060	1.84e-29	126
Msa0777810	AT5G20730.2	56.162	495	200	11	4	489	5	491	7.52e-159	494
Msa0777810	AT5G20730.2	35.887	248	130	7	584	803	879	1125	6.12e-29	125
Msa0777810	AT1G19850.1	61.619	383	139	4	11	391	41	417	1.36e-158	486
Msa0777810	AT1G19850.1	53.684	95	44	0	717	811	795	889	1.69e-26	117
Msa0777810	AT1G19850.2	62.269	379	135	4	15	391	34	406	1.65e-158	485

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Find 253 sgRNAs with CRISPR-Local

Find 698 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGTCTTTATAAAG+AGG	0.421389	5_2:+57205952	Msa0777810:five_prime_UTR
AAACCAGATTTCATAGATTC+AGG	0.326405	5_2:+57213557	Msa0777810:CDS
AAACGACACCTTCTTACCAC+AGG	0.613976	5_2:+57210139	Msa0777810:CDS
AAAGATTCTCCGCCAAGCCT+TGG	0.484860	5_2:-57213397	None:intergenic
AACAAATACACTCCAGCCTG+TGG	0.623923	5_2:-57210155	None:intergenic
AACAGTCACCTCAACAATCA+TGG	0.424537	5_2:+57213693	Msa0777810:CDS
AACATCAGGAATGAGTCAGC+AGG	0.513653	5_2:+57206012	Msa0777810:CDS
AACTAGAGTGTTGCTTCTGA+TGG	0.464826	5_2:-57213514	None:intergenic
AAGATCCTCTTAGATCAGGC+TGG	0.555768	5_2:+57214254	Msa0777810:CDS
AAGGGAATGTAGATCTATTA+AGG	0.311704	5_2:+57213246	Msa0777810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTCAGTTTCATTTCAA+TGG	+	chr5_2:57205500-57205519	Msa0777810:five_prime_UTR	30.0%
CCTTAAAAAACCAACATCAT+GGG	-	chr5_2:57205768-57205787	None:intergenic	30.0%
ACCTTAAAAAACCAACATCA+TGG	-	chr5_2:57205769-57205788	None:intergenic	30.0%
GGTATGAGTGAATGTAATAA+TGG	+	chr5_2:57205868-57205887	Msa0777810:five_prime_UTR	30.0%
TTGATGTGTGAAATAATAGG+AGG	+	chr5_2:57206360-57206379	Msa0777810:intron	30.0%
TGATGTGTGAAATAATAGGA+GGG	+	chr5_2:57206361-57206380	Msa0777810:intron	30.0%
AAACAATAAGGAGTTGTAGT+AGG	-	chr5_2:57206519-57206538	None:intergenic	30.0%
TACACAACACTGAAACAATA+AGG	-	chr5_2:57206531-57206550	None:intergenic	30.0%
GCATTGTAACATTATGAAGT+TGG	-	chr5_2:57206761-57206780	None:intergenic	30.0%
GAATAAAAAGGATAACGTAC+CGG	-	chr5_2:57206948-57206967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	57205363	57215550	57205363	ID=Msa0777810;Name=Msa0777810
chr5_2	mRNA	57205363	57215550	57205363	ID=Msa0777810-mRNA-1;Parent=Msa0777810;Name=Msa0777810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=638\|1\|1\|1\|1\|1\|14\|389\|841
chr5_2	exon	57205363	57206043	57205363	ID=Msa0777810-mRNA-1:exon:16914;Parent=Msa0777810-mRNA-1
chr5_2	exon	57206379	57206494	57206379	ID=Msa0777810-mRNA-1:exon:16915;Parent=Msa0777810-mRNA-1
chr5_2	exon	57206684	57206782	57206684	ID=Msa0777810-mRNA-1:exon:16916;Parent=Msa0777810-mRNA-1
chr5_2	exon	57206891	57206947	57206891	ID=Msa0777810-mRNA-1:exon:16917;Parent=Msa0777810-mRNA-1
chr5_2	exon	57207036	57207191	57207036	ID=Msa0777810-mRNA-1:exon:16918;Parent=Msa0777810-mRNA-1
chr5_2	exon	57207274	57207358	57207274	ID=Msa0777810-mRNA-1:exon:16919;Parent=Msa0777810-mRNA-1
chr5_2	exon	57210131	57210221	57210131	ID=Msa0777810-mRNA-1:exon:16920;Parent=Msa0777810-mRNA-1
chr5_2	exon	57210317	57210481	57210317	ID=Msa0777810-mRNA-1:exon:16921;Parent=Msa0777810-mRNA-1
chr5_2	exon	57210567	57210689	57210567	ID=Msa0777810-mRNA-1:exon:16922;Parent=Msa0777810-mRNA-1
chr5_2	exon	57212072	57212147	57212072	ID=Msa0777810-mRNA-1:exon:16923;Parent=Msa0777810-mRNA-1
chr5_2	exon	57212631	57212778	57212631	ID=Msa0777810-mRNA-1:exon:16924;Parent=Msa0777810-mRNA-1
chr5_2	exon	57213054	57214051	57213054	ID=Msa0777810-mRNA-1:exon:16925;Parent=Msa0777810-mRNA-1
chr5_2	exon	57214145	57214335	57214145	ID=Msa0777810-mRNA-1:exon:16926;Parent=Msa0777810-mRNA-1
chr5_2	exon	57214984	57215550	57214984	ID=Msa0777810-mRNA-1:exon:16927;Parent=Msa0777810-mRNA-1
chr5_2	five_prime_UTR	57205363	57206000	57205363	ID=Msa0777810-mRNA-1:five_prime_utr;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57206001	57206043	57206001	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57206379	57206494	57206379	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57206684	57206782	57206684	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57206891	57206947	57206891	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57207036	57207191	57207036	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57207274	57207358	57207274	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57210131	57210221	57210131	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57210317	57210481	57210317	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57210567	57210689	57210567	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57212072	57212147	57212072	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57212631	57212778	57212631	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57213054	57214051	57213054	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57214145	57214335	57214145	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	CDS	57214984	57215161	57214984	ID=Msa0777810-mRNA-1:cds;Parent=Msa0777810-mRNA-1
chr5_2	three_prime_UTR	57215162	57215550	57215162	ID=Msa0777810-mRNA-1:three_prime_utr;Parent=Msa0777810-mRNA-1

Gene Sequence

>Msa0777810

ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGACAAATACCGAATTATCCTAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACGCTACAGCCATTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTAGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTCCGAGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGCGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAATTCGTCATACCACTCTCCAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCGACAGCTGGGGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGATGGCAGAGATGAGGCAACTAATGGACTGATGTGGATGCGAGGCGGTCCTGGAGACCATGGTCTTAACTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTAGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAATTATCAACAATCAGGAAACCTCAGTCCTATGCAGCTTCAGCAACAGCAAGCAATTCAACAATCCGTATCGACTAATAATATCATGCAACCACAAGGCCAAGGCTTGGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGTGAAAACCAAACACAGCAACAAAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCGTCATACTCAAAACCAGATTTCATAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCACCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTAGATGCCATTGGCAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCAATCGTACAACCACATGGAAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAACATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCCCGTTATACTACTGCATCAGCTCATGCCGATGCATCGACAATGCCGTTAGGGGAGTCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACGCTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA

Protein sequence

>Msa0777810

MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEATNGLMWMRGGPGDHGLNSMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQQSYQDSVLIQGDPLHQKQHSSLPSPSYSKPDFIDSGMKFAASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVQPHGNSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASAHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNAGAESHDIVSGLPSLGSLEY*