AlfalfaGEDB | Msa0777830

M. sativa cultivar zhongmu-4 / Msa0777830

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777830	sp\|Q9FGV1\|ARFH_ARATH	68.606	825	221	14	31	841	2	802	0.0	1068

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777830	G7KFN6	98.692	841	11	0	30	870	1	841	0.0	1716

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TFs/TRs:

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Gene ID	Type	Classification
Msa0777830	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0721310	Msa0777830	0.870165	1.792888e-66	-8.615850e-47
Msa0777810	Msa0777830	0.966545	4.594134e-126	-8.615850e-47
Msa0777830	Msa0815420	0.822922	1.828129e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777830	MtrunA17_Chr5g0433301	98.692	841	11	0	30	870	1	841	0.0	1716
Msa0777830	MtrunA17_Chr3g0109391	82.374	834	133	11	47	870	20	849	0.0	1359
Msa0777830	MtrunA17_Chr2g0285461	58.379	913	299	20	32	870	3	908	0.0	917
Msa0777830	MtrunA17_Chr8g0376771	75.709	494	104	9	32	519	3	486	0.0	736
Msa0777830	MtrunA17_Chr4g0070181	66.262	412	129	8	45	451	15	421	5.10e-170	523
Msa0777830	MtrunA17_Chr4g0070181	50.459	109	54	0	724	832	974	1082	4.63e-29	125
Msa0777830	MtrunA17_Chr1g0156321	68.120	367	113	3	45	410	35	398	2.22e-167	508
Msa0777830	MtrunA17_Chr1g0156321	41.060	151	71	3	699	849	727	859	1.08e-25	114
Msa0777830	MtrunA17_Chr2g0301251	59.657	466	159	10	45	496	15	465	5.79e-165	509
Msa0777830	MtrunA17_Chr2g0301251	59.341	91	37	0	746	836	988	1078	1.29e-29	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777830	AT5G37020.1	68.606	825	221	14	31	841	2	802	0.0	1068
Msa0777830	AT5G37020.2	68.844	796	210	15	31	812	2	773	0.0	1030
Msa0777830	AT5G37020.3	66.575	724	206	13	127	836	1	702	0.0	890
Msa0777830	AT1G19220.1	58.592	483	183	9	45	516	15	491	2.01e-168	518
Msa0777830	AT1G19220.1	55.446	101	45	0	746	846	960	1060	2.25e-29	126
Msa0777830	AT5G20730.2	56.162	495	200	11	33	518	5	491	1.94e-158	494
Msa0777830	AT5G20730.2	35.887	248	130	7	613	832	879	1125	8.93e-29	124
Msa0777830	AT1G19850.1	61.619	383	139	4	40	420	41	417	5.47e-158	485
Msa0777830	AT1G19850.1	53.684	95	44	0	746	840	795	889	2.54e-26	116
Msa0777830	AT1G19850.2	61.619	383	139	4	40	420	30	406	6.90e-158	485

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Find 245 sgRNAs with CRISPR-Local

Find 661 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGATTTCATAGATTC+AGG	0.326405	5_2:-57240158	Msa0777830:CDS
AAACGACACCTTCTTACCAC+AGG	0.613976	5_2:-57243574	Msa0777830:CDS
AAAGATTCTCCGCCAAGCCT+TGG	0.484860	5_2:+57240318	None:intergenic
AACAAATACACTCCAGCCTG+TGG	0.623923	5_2:+57243558	None:intergenic
AACAGTCACCTCAACAATCA+TGG	0.424537	5_2:-57240022	Msa0777830:CDS
AACATCAGGAATGAGTCAGC+AGG	0.513653	5_2:-57247700	Msa0777830:CDS
AACTAGAGTGTTGCTTCTGA+TGG	0.464826	5_2:+57240201	None:intergenic
AAGATCCTCTTAGATCAGGC+TGG	0.555768	5_2:-57239461	Msa0777830:CDS
AAGGGAATGTAGATCTATTA+AGG	0.311704	5_2:-57240469	Msa0777830:CDS
AAGGTGCTGGATTGTTGCCC+TGG	0.429616	5_2:-57240580	Msa0777830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTATGAGTGAATGTAATAA+TGG	-	chr5_2:57238219-57238238	Msa0777830:three_prime_UTR	30.0%
TTGATGTGTGAAATAATAGG+AGG	-	chr5_2:57238710-57238729	Msa0777830:CDS	30.0%
TGATGTGTGAAATAATAGGA+GGG	-	chr5_2:57238711-57238730	Msa0777830:CDS	30.0%
AAACAATAAGGAGTTGTAGT+AGG	+	chr5_2:57238869-57238888	None:intergenic	30.0%
TACACAACACTGAAACAATA+AGG	+	chr5_2:57238881-57238900	None:intergenic	30.0%
GCATTGTAACATTATGAAGT+TGG	+	chr5_2:57239111-57239130	None:intergenic	30.0%
GAATAAAAAGGATAACGTAC+CGG	+	chr5_2:57239298-57239317	None:intergenic	30.0%
CAGAAAGGAAAACAAAATCA+CGG	+	chr5_2:57239552-57239571	None:intergenic	30.0%
CAAACTAGAATCAAACAGAA+AGG	+	chr5_2:57239567-57239586	None:intergenic	30.0%
AGTGAATTAGAAACTAACCT+CGG	+	chr5_2:57239707-57239726	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	57238192	57247893	57238192	ID=Msa0777830;Name=Msa0777830
chr5_2	mRNA	57238192	57247893	57238192	ID=Msa0777830-mRNA-1;Parent=Msa0777830;Name=Msa0777830-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.92\|0.86\|1\|1\|1\|15\|389\|870
chr5_2	exon	57238192	57238758	57238192	ID=Msa0777830-mRNA-1:exon:16960;Parent=Msa0777830-mRNA-1
chr5_2	exon	57239402	57239592	57239402	ID=Msa0777830-mRNA-1:exon:16959;Parent=Msa0777830-mRNA-1
chr5_2	exon	57239686	57240683	57239686	ID=Msa0777830-mRNA-1:exon:16958;Parent=Msa0777830-mRNA-1
chr5_2	exon	57240957	57241104	57240957	ID=Msa0777830-mRNA-1:exon:16957;Parent=Msa0777830-mRNA-1
chr5_2	exon	57241588	57241663	57241588	ID=Msa0777830-mRNA-1:exon:16956;Parent=Msa0777830-mRNA-1
chr5_2	exon	57243046	57243168	57243046	ID=Msa0777830-mRNA-1:exon:16955;Parent=Msa0777830-mRNA-1
chr5_2	exon	57243254	57243418	57243254	ID=Msa0777830-mRNA-1:exon:16954;Parent=Msa0777830-mRNA-1
chr5_2	exon	57243514	57243604	57243514	ID=Msa0777830-mRNA-1:exon:16953;Parent=Msa0777830-mRNA-1
chr5_2	exon	57246377	57246461	57246377	ID=Msa0777830-mRNA-1:exon:16952;Parent=Msa0777830-mRNA-1
chr5_2	exon	57246544	57246699	57246544	ID=Msa0777830-mRNA-1:exon:16951;Parent=Msa0777830-mRNA-1
chr5_2	exon	57246788	57246844	57246788	ID=Msa0777830-mRNA-1:exon:16950;Parent=Msa0777830-mRNA-1
chr5_2	exon	57246953	57247051	57246953	ID=Msa0777830-mRNA-1:exon:16949;Parent=Msa0777830-mRNA-1
chr5_2	exon	57247241	57247356	57247241	ID=Msa0777830-mRNA-1:exon:16948;Parent=Msa0777830-mRNA-1
chr5_2	exon	57247691	57247727	57247691	ID=Msa0777830-mRNA-1:exon:16947;Parent=Msa0777830-mRNA-1
chr5_2	exon	57247801	57247893	57247801	ID=Msa0777830-mRNA-1:exon:16946;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57247801	57247893	57247801	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57247691	57247727	57247691	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57247241	57247356	57247241	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57246953	57247051	57246953	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57246788	57246844	57246788	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57246544	57246699	57246544	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57246377	57246461	57246377	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57243514	57243604	57243514	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57243254	57243418	57243254	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57243046	57243168	57243046	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57241588	57241663	57241588	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57240957	57241104	57240957	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57239686	57240683	57239686	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57239402	57239592	57239402	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	CDS	57238581	57238758	57238581	ID=Msa0777830-mRNA-1:cds;Parent=Msa0777830-mRNA-1
chr5_2	three_prime_UTR	57238192	57238580	57238192	ID=Msa0777830-mRNA-1:three_prime_utr;Parent=Msa0777830-mRNA-1

Gene Sequence

>Msa0777830

ATGGAGTGCATTGGAAAGTGGGAGAGAGGTATGAGTGAATGTAATAATGGGTTTGGGGAAATTGAGGATGGGGACTCTGAGTTAGGGTTCAATCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGACAAATACCGAATTATCCTAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACGCTACAGCCATTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTAGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTCCGAGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGCGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAATTCGTCATACCACTCTCCAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCGACAGCTGGGGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGATGGCAGAGATGAGGCAACTAATGGACTGATGTGGATGCGAGGCGGTCCTGGAGACCATGGTCTTAACTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTAGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAATTATCAACAATCAGGAAACCTCAGTCCTATGCAGCTTCAGCAACAGCAAGCAATTCAACAATCCGTATCGACTAATAATATCATGCAACCACAAGGCCAAGGCTTGGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGTGAAAACCAAACACAGCAACAAAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCGTCATACTCAAAACCAGATTTCATAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCACCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTAGATGCCATTGGCAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCAATCGTACAACCACATGGAAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAACATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCCCGTTATACTACTGCATCAGCTCATGCCGATGCATCGACAATGCCGTTAGGGGAGTCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACGCTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA

Protein sequence

>Msa0777830

MECIGKWERGMSECNNGFGEIEDGDSELGFNLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEATNGLMWMRGGPGDHGLNSMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQQSYQDSVLIQGDPLHQKQHSSLPSPSYSKPDFIDSGMKFAASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVQPHGNSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASAHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNAGAESHDIVSGLPSLGSLEY*