Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778070 | sp|Q6NQJ8|SDG40_ARATH | 50.206 | 486 | 215 | 8 | 1 | 463 | 1 | 482 | 3.69e-162 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778070 | G7KFS1 | 86.680 | 488 | 41 | 2 | 1 | 464 | 1 | 488 | 0.0 | 836 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0778070 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0778070 | Msa1121450 | -0.807463 | 4.992840e-50 | -8.615850e-47 |
| Msa0350990 | Msa0778070 | 0.800823 | 1.203010e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778070 | MtrunA17_Chr5g0433621 | 86.680 | 488 | 41 | 2 | 1 | 464 | 1 | 488 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778070 | AT5G17240.1 | 50.206 | 486 | 215 | 8 | 1 | 463 | 1 | 482 | 3.75e-163 | 470 |
| Msa0778070 | AT5G17240.2 | 49.635 | 411 | 184 | 7 | 76 | 463 | 1 | 411 | 2.43e-133 | 391 |
Find 94 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGTTGTAATGCAAATA+AGG | 0.165609 | 5_2:+57895576 | Msa0778070:three_prime_UTR |
| GTCGGACATCTTGCATATTC+TGG | 0.229958 | 5_2:+57895170 | Msa0778070:CDS |
| CTCTTCTCTCTCCTCTGTTC+AGG | 0.238607 | 5_2:+57891554 | Msa0778070:CDS |
| CTAGTCATCAAAGCAGATTT+TGG | 0.239455 | 5_2:-57891480 | None:intergenic |
| GAAATGATGTTATGATTAAT+TGG | 0.256359 | 5_2:+57895559 | Msa0778070:exon |
| TCAACACTCTCTTTCCTCTC+TGG | 0.281118 | 5_2:+57891191 | Msa0778070:CDS |
| AGCTTCTTTCCATTCTGATT+TGG | 0.281371 | 5_2:-57893634 | None:intergenic |
| CTCTTATTGCAATGGAATAC+TGG | 0.292222 | 5_2:+57895526 | Msa0778070:CDS |
| CACTTCTACTTCATGGTCTA+AGG | 0.325752 | 5_2:+57895055 | Msa0778070:CDS |
| ATTGGTTGTAATGCAAATAA+GGG | 0.335927 | 5_2:+57895577 | Msa0778070:three_prime_UTR |
| GACTAGTGAGAGTGTTATTA+TGG | 0.345596 | 5_2:+57891497 | Msa0778070:CDS |
| CAACACTCTCTTTCCTCTCT+GGG | 0.345897 | 5_2:+57891192 | Msa0778070:CDS |
| GGGCAACCCCTCATAATAAA+AGG | 0.358661 | 5_2:+57895141 | Msa0778070:CDS |
| TTGTAAGGGATATGATTTAC+TGG | 0.358933 | 5_2:+57895612 | Msa0778070:three_prime_UTR |
| AGTCGTAACTTTGCGGCAAA+TGG | 0.362498 | 5_2:-57893396 | None:intergenic |
| CTATGTACACTTCTACTTCA+TGG | 0.363522 | 5_2:+57895048 | Msa0778070:CDS |
| GGTGGAAATTAGCCGTCTTA+TGG | 0.364443 | 5_2:+57895468 | Msa0778070:CDS |
| GACTACAATCCAATGCATTC+AGG | 0.368758 | 5_2:-57895301 | None:intergenic |
| GAAAGAAGCTCATGCCTTGA+TGG | 0.398662 | 5_2:+57893647 | Msa0778070:CDS |
| TACGACTTGCTAGCCATGTT+TGG | 0.399670 | 5_2:+57893412 | Msa0778070:CDS |
| GCACCTGGAGAGGACCTATC+TGG | 0.423204 | 5_2:+57894466 | Msa0778070:intron |
| ATGAAATCATCGTTATGAAA+TGG | 0.434118 | 5_2:+57895213 | Msa0778070:CDS |
| AGAATTGTGCAGTAGAGGTT+TGG | 0.436999 | 5_2:+57891413 | Msa0778070:intron |
| CAATCAAATGGAGACAAGAA+TGG | 0.446355 | 5_2:+57894511 | Msa0778070:CDS |
| CTTGTTATACGAAGTTGGTA+AGG | 0.457725 | 5_2:+57893342 | Msa0778070:CDS |
| GTTTGCTTGTTATACGAAGT+TGG | 0.462021 | 5_2:+57893337 | Msa0778070:CDS |
| AGGAAAGAGAGTGTTGAGAA+TGG | 0.462418 | 5_2:-57891185 | None:intergenic |
| CTACCTTTCCTCACTCTGGC+GGG | 0.467292 | 5_2:+57891232 | Msa0778070:CDS |
| GAATTGTGCAGTAGAGGTTT+GGG | 0.468459 | 5_2:+57891414 | Msa0778070:intron |
| GTGCTGTGAGAGATCTTAAG+AGG | 0.468743 | 5_2:+57891436 | Msa0778070:CDS |
| CACCAGGTTCTATTATGCTA+TGG | 0.472726 | 5_2:+57894936 | Msa0778070:intron |
| ATCCAATGCATTCAGGAGTA+AGG | 0.478539 | 5_2:-57895294 | None:intergenic |
| TTGGTAAGGGAAGGACTTCA+AGG | 0.479252 | 5_2:+57893356 | Msa0778070:CDS |
| TACCTTACTCCTGAATGCAT+TGG | 0.480824 | 5_2:+57895292 | Msa0778070:CDS |
| TTGTTAAACTTATGTCATCC+AGG | 0.485932 | 5_2:+57895348 | Msa0778070:CDS |
| TAGCCGTCTTATGGAGGCTC+AGG | 0.496652 | 5_2:+57895477 | Msa0778070:CDS |
| AACTTTGCGGCAAATGGACG+AGG | 0.497147 | 5_2:-57893390 | None:intergenic |
| TGCGGCAAATGGACGAGGTA+AGG | 0.498856 | 5_2:-57893385 | None:intergenic |
| GATTGTATCTCTTATTGCAA+TGG | 0.501431 | 5_2:+57895518 | Msa0778070:CDS |
| GCTAGGACAAATTACAAGAA+AGG | 0.501930 | 5_2:+57894622 | Msa0778070:CDS |
| AAATTACAAGAAAGGCGATC+AGG | 0.502432 | 5_2:+57894630 | Msa0778070:CDS |
| AAACATCAGTTCTTCCATCA+AGG | 0.504879 | 5_2:-57893661 | None:intergenic |
| GCTAGCAAGTCGTAACTTTG+CGG | 0.510142 | 5_2:-57893403 | None:intergenic |
| GTTTCTACCTTTCCTCACTC+TGG | 0.514945 | 5_2:+57891228 | Msa0778070:CDS |
| AAGAGAGTGTTGAGAATGGT+CGG | 0.528406 | 5_2:-57891181 | None:intergenic |
| TATATTATAAGCTTCTAAGA+AGG | 0.534787 | 5_2:-57895384 | None:intergenic |
| GAAAGAGCTAGGTTAGAAGA+TGG | 0.535954 | 5_2:+57891080 | Msa0778070:exon |
| GCTGGTTGTTTATGCCCTGT+TGG | 0.537691 | 5_2:+57894424 | Msa0778070:CDS |
| TACTAGCTGCGTTACGACTG+TGG | 0.542432 | 5_2:+57895120 | Msa0778070:CDS |
| GAAGGTATAAACTTCATCCC+TGG | 0.542794 | 5_2:-57895366 | None:intergenic |
| GTGCGAGTTCTGAAAGAGCT+AGG | 0.544527 | 5_2:+57891069 | Msa0778070:five_prime_UTR |
| GAAGTAGAAGTGTACATAGC+AGG | 0.549201 | 5_2:-57895044 | None:intergenic |
| TTTGTCAAATTCACCAAACA+TGG | 0.551986 | 5_2:-57893425 | None:intergenic |
| CTCAGAGACTAACTGATGGT+GGG | 0.556902 | 5_2:+57894566 | Msa0778070:CDS |
| AAACGAGAAGGTCAATGGAT+AGG | 0.559566 | 5_2:+57895447 | Msa0778070:CDS |
| AAGAACATGGAAGCTTTGAA+AGG | 0.566087 | 5_2:+57891106 | Msa0778070:CDS |
| ATCAGGTGGATGAAGCTATG+TGG | 0.568564 | 5_2:+57893586 | Msa0778070:intron |
| TTTGAGCTTCTTGAACACTA+CGG | 0.569876 | 5_2:+57894972 | Msa0778070:CDS |
| GTGTACATAGCAGGTTCCAA+AGG | 0.569923 | 5_2:-57895035 | None:intergenic |
| TCTACCTTTCCTCACTCTGG+CGG | 0.572108 | 5_2:+57891231 | Msa0778070:CDS |
| CTCGGACATTGCATATACCA+TGG | 0.573706 | 5_2:+57894395 | Msa0778070:CDS |
| GGAAATTAGCCGTCTTATGG+AGG | 0.574416 | 5_2:+57895471 | Msa0778070:CDS |
| CTACGTCGTCAATACCAGAT+AGG | 0.574667 | 5_2:-57894480 | None:intergenic |
| CGAGAAGGTCAATGGATAGG+TGG | 0.576592 | 5_2:+57895450 | Msa0778070:CDS |
| TGTTAAACTTATGTCATCCA+GGG | 0.583564 | 5_2:+57895349 | Msa0778070:CDS |
| GCTTTGAAAGGTTCTTAACA+TGG | 0.587490 | 5_2:+57891118 | Msa0778070:CDS |
| TCAGGTGGATGAAGCTATGT+GGG | 0.588137 | 5_2:+57893587 | Msa0778070:intron |
| TCGGACATTGCATATACCAT+GGG | 0.588653 | 5_2:+57894396 | Msa0778070:CDS |
| TCTCAGAGACTAACTGATGG+TGG | 0.592968 | 5_2:+57894565 | Msa0778070:CDS |
| GTATCGTCTTCAATAGATGT+TGG | 0.593968 | 5_2:-57895272 | None:intergenic |
| TAGAAGATGGAACAAGAACA+TGG | 0.594815 | 5_2:+57891093 | Msa0778070:exon |
| TGCTGTGAGAGATCTTAAGA+GGG | 0.596123 | 5_2:+57891437 | Msa0778070:CDS |
| TATACGAAGTTGGTAAGGGA+AGG | 0.596826 | 5_2:+57893347 | Msa0778070:CDS |
| TGTACATAGCAGGTTCCAAA+GGG | 0.596868 | 5_2:-57895034 | None:intergenic |
| TTGTTATACGAAGTTGGTAA+GGG | 0.600851 | 5_2:+57893343 | Msa0778070:CDS |
| CATTCTCAGAGACTAACTGA+TGG | 0.601638 | 5_2:+57894562 | Msa0778070:CDS |
| CATATACCATGGGATGAAGC+TGG | 0.602506 | 5_2:+57894406 | Msa0778070:CDS |
| CATAATAAAAGGAGGTCTGT+CGG | 0.606789 | 5_2:+57895152 | Msa0778070:CDS |
| GTGAGTTACCCGCCAGAGTG+AGG | 0.607950 | 5_2:-57891240 | None:intergenic |
| AAATGGAGACAAGAATGGAA+TGG | 0.608545 | 5_2:+57894516 | Msa0778070:CDS |
| ATACCTGAGCCTCCATAAGA+CGG | 0.617433 | 5_2:-57895480 | None:intergenic |
| AAACAACCAGCTTCATCCCA+TGG | 0.633574 | 5_2:-57894412 | None:intergenic |
| ACTAGCTGCGTTACGACTGT+GGG | 0.639311 | 5_2:+57895121 | Msa0778070:CDS |
| TTGTTGAATCTGATATTCCG+AGG | 0.651042 | 5_2:-57891149 | None:intergenic |
| TCACTCTATATCCATCCCAA+CGG | 0.653728 | 5_2:+57895080 | Msa0778070:CDS |
| AATAAGAGATACAATCAATG+AGG | 0.661327 | 5_2:-57895511 | None:intergenic |
| TTACCCGCCAGAGTGAGGAA+AGG | 0.662573 | 5_2:-57891235 | None:intergenic |
| CAACCCCTCATAATAAAAGG+AGG | 0.668522 | 5_2:+57895144 | Msa0778070:CDS |
| GCAGCTAGTAGCGCAAACGA+AGG | 0.670133 | 5_2:-57895107 | None:intergenic |
| GCTGTGAGAGATCTTAAGAG+GGG | 0.713261 | 5_2:+57891438 | Msa0778070:CDS |
| AATTAAACAAGTCACCAACA+GGG | 0.716642 | 5_2:-57894438 | None:intergenic |
| GCAGAGAGAATAACCCAGAG+AGG | 0.719344 | 5_2:-57891205 | None:intergenic |
| TTAACATGGACATCACACCT+CGG | 0.740204 | 5_2:+57891132 | Msa0778070:CDS |
| GTAAGGGAAGGACTTCAAGG+TGG | 0.765289 | 5_2:+57893359 | Msa0778070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATACAAAAAACTAT+TGG | - | chr5_2:57891920-57891939 | None:intergenic | 10.0% |
| !! | TTTATGATAAAATTTATTCA+AGG | - | chr5_2:57894726-57894745 | None:intergenic | 10.0% |
| !! | TATTTAATTCTTGAAATTGT+AGG | + | chr5_2:57891931-57891950 | Msa0778070:intron | 15.0% |
| !! | ATTTAATTCTTGAAATTGTA+GGG | + | chr5_2:57891932-57891951 | Msa0778070:intron | 15.0% |
| !!! | ATTTTTTAGTTTATCTCATT+AGG | + | chr5_2:57893477-57893496 | Msa0778070:intron | 15.0% |
| !! | AAACCAAAACAAAAATAAAA+GGG | - | chr5_2:57893751-57893770 | None:intergenic | 15.0% |
| !! | TAAACCAAAACAAAAATAAA+AGG | - | chr5_2:57893752-57893771 | None:intergenic | 15.0% |
| !! | CGAATTAGAAAATATTTATA+CGG | - | chr5_2:57894837-57894856 | None:intergenic | 15.0% |
| !! | TGATACTATGATTTCAATTT+AGG | + | chr5_2:57892089-57892108 | Msa0778070:intron | 20.0% |
| !! | GATACTATGATTTCAATTTA+GGG | + | chr5_2:57892090-57892109 | Msa0778070:intron | 20.0% |
| !!! | TAATTTTAATTACCTTCCAT+TGG | + | chr5_2:57893141-57893160 | Msa0778070:intron | 20.0% |
| !! | ATGATTCCAACAAAAAAAAT+TGG | - | chr5_2:57893180-57893199 | None:intergenic | 20.0% |
| !!! | TATCCTCTATTTTATGTTAT+CGG | + | chr5_2:57894090-57894109 | Msa0778070:intron | 20.0% |
| !!! | GTAGATAATTTTCAATCAAA+TGG | + | chr5_2:57894499-57894518 | Msa0778070:CDS | 20.0% |
| !!! | GAAATTTTAACATAACCATT+AGG | + | chr5_2:57894669-57894688 | Msa0778070:intron | 20.0% |
| !! | AATTGAATATGTAAACCTAA+TGG | - | chr5_2:57894687-57894706 | None:intergenic | 20.0% |
| !!! | TATATTATAAGCTTCTAAGA+AGG | - | chr5_2:57895387-57895406 | None:intergenic | 20.0% |
| !! | GAAATGATGTTATGATTAAT+TGG | + | chr5_2:57895559-57895578 | Msa0778070:exon | 20.0% |
| !!! | AAACTTTGCATTTGTTTTCT+TGG | + | chr5_2:57891303-57891322 | Msa0778070:intron | 25.0% |
| !!! | AACTTTGCATTTGTTTTCTT+GGG | + | chr5_2:57891304-57891323 | Msa0778070:intron | 25.0% |
| ! | CCAAAACAATACAACAAAAA+TGG | - | chr5_2:57891393-57891412 | None:intergenic | 25.0% |
| !!! | CCATTTTTGTTGTATTGTTT+TGG | + | chr5_2:57891390-57891409 | Msa0778070:intron | 25.0% |
| !!! | TGTTCTGTTCATGTTTTTTT+AGG | + | chr5_2:57891610-57891629 | Msa0778070:intron | 25.0% |
| ! | AATTTGATCCATGAAATAGT+AGG | + | chr5_2:57891668-57891687 | Msa0778070:intron | 25.0% |
| !!! | ACCTAATTAACAGTTGATAA+TGG | + | chr5_2:57891888-57891907 | Msa0778070:intron | 25.0% |
| ! | TCCATTATCAACTGTTAATT+AGG | - | chr5_2:57891892-57891911 | None:intergenic | 25.0% |
| ! | TTGTAATTTCATTAACAGCA+GGG | - | chr5_2:57891973-57891992 | None:intergenic | 25.0% |
| ! | TTTGTAATTTCATTAACAGC+AGG | - | chr5_2:57891974-57891993 | None:intergenic | 25.0% |
| ! | ACTAAATTAACCGATCTAAA+GGG | - | chr5_2:57892034-57892053 | None:intergenic | 25.0% |
| !! | TCATTTAAGTCTTGTATTCT+TGG | - | chr5_2:57892173-57892192 | None:intergenic | 25.0% |
| ! | AACAAATTGAGGACTATAAA+AGG | - | chr5_2:57892250-57892269 | None:intergenic | 25.0% |
| !!! | GCTGTTTTCATAAGTTATAT+TGG | - | chr5_2:57893007-57893026 | None:intergenic | 25.0% |
| ! | GGAAGGTAATTAAAATTAAG+AGG | - | chr5_2:57893139-57893158 | None:intergenic | 25.0% |
| !!! | ACCAATCCAATTTTTTTTGT+TGG | + | chr5_2:57893171-57893190 | Msa0778070:intron | 25.0% |
| ! | TCCAACAAAAAAAATTGGAT+TGG | - | chr5_2:57893175-57893194 | None:intergenic | 25.0% |
| ! | ATCTGCAATATAAAAAAGCT+TGG | - | chr5_2:57893310-57893329 | None:intergenic | 25.0% |
| ! | AATAACTCATCTTAATGTTG+TGG | + | chr5_2:57893561-57893580 | Msa0778070:intron | 25.0% |
| !!! | AGTTTTTAACATTTAAGGCT+TGG | + | chr5_2:57893691-57893710 | Msa0778070:intron | 25.0% |
| !!! | GTTTTTAACATTTAAGGCTT+GGG | + | chr5_2:57893692-57893711 | Msa0778070:intron | 25.0% |
| ! | CTACATTATAATGTTGTCAA+TGG | - | chr5_2:57893961-57893980 | None:intergenic | 25.0% |
| ! | AATGTTGTAACAGACTTATT+GGG | + | chr5_2:57894184-57894203 | Msa0778070:intron | 25.0% |
| !!! | ATTGATTCATTTTGTGTTCT+TGG | + | chr5_2:57894276-57894295 | Msa0778070:intron | 25.0% |
| ! | TTTACTCATGACAAGTAAAA+TGG | - | chr5_2:57894313-57894332 | None:intergenic | 25.0% |
| ! | ATGAAATCATCGTTATGAAA+TGG | + | chr5_2:57895213-57895232 | Msa0778070:CDS | 25.0% |
| ! | TTTCATCTATAAAAACGAGA+AGG | + | chr5_2:57895435-57895454 | Msa0778070:CDS | 25.0% |
| ! | AATAAGAGATACAATCAATG+AGG | - | chr5_2:57895514-57895533 | None:intergenic | 25.0% |
| ! | AATTGGTTGTAATGCAAATA+AGG | + | chr5_2:57895576-57895595 | Msa0778070:three_prime_UTR | 25.0% |
| ! | ATTGGTTGTAATGCAAATAA+GGG | + | chr5_2:57895577-57895596 | Msa0778070:three_prime_UTR | 25.0% |
| !!! | GGTTTTCCTTATTTTTGTAA+GGG | + | chr5_2:57895598-57895617 | Msa0778070:three_prime_UTR | 25.0% |
| ! | TCATATCCCTTACAAAAATA+AGG | - | chr5_2:57895607-57895626 | None:intergenic | 25.0% |
| TTTCTTGGGTGATTAATCAA+AGG | + | chr5_2:57891318-57891337 | Msa0778070:intron | 30.0% | |
| TTCTTGGGTGATTAATCAAA+GGG | + | chr5_2:57891319-57891338 | Msa0778070:intron | 30.0% | |
| ACATGAACAGAACAAAAACT+TGG | - | chr5_2:57891604-57891623 | None:intergenic | 30.0% | |
| GATACATTCCTACTATTTCA+TGG | - | chr5_2:57891679-57891698 | None:intergenic | 30.0% | |
| CGACATTGCAAAATGTTAAT+CGG | + | chr5_2:57891739-57891758 | Msa0778070:intron | 30.0% | |
| GACTAAATTAACCGATCTAA+AGG | - | chr5_2:57892035-57892054 | None:intergenic | 30.0% | |
| CATAGTATCATACATCACAT+TGG | - | chr5_2:57892079-57892098 | None:intergenic | 30.0% | |
| ! | GCAATTTGGTTTATGAAAAC+TGG | - | chr5_2:57892833-57892852 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr5_2:57892919-57892938 | Msa0778070:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr5_2:57892920-57892939 | Msa0778070:intron | 30.0% |
| ATTGTATGCATGGTTAAACA+AGG | + | chr5_2:57893198-57893217 | Msa0778070:intron | 30.0% | |
| !! | TTGTTATACGAAGTTGGTAA+GGG | + | chr5_2:57893343-57893362 | Msa0778070:CDS | 30.0% |
| TTTGTCAAATTCACCAAACA+TGG | - | chr5_2:57893428-57893447 | None:intergenic | 30.0% | |
| TAGGTTAGATTATAGCATCT+TGG | + | chr5_2:57893496-57893515 | Msa0778070:intron | 30.0% | |
| ATCTTAATGTTGTGGTTATC+AGG | + | chr5_2:57893569-57893588 | Msa0778070:intron | 30.0% | |
| TACAAAAAGCCAAATCAGAA+TGG | + | chr5_2:57893625-57893644 | Msa0778070:CDS | 30.0% | |
| ! | GCCTCAGTTTTTAACATTTA+AGG | + | chr5_2:57893686-57893705 | Msa0778070:intron | 30.0% |
| GCCTTAAATGTTAAAAACTG+AGG | - | chr5_2:57893690-57893709 | None:intergenic | 30.0% | |
| CCAAAACAAAAATAAAAGGG+AGG | - | chr5_2:57893748-57893767 | None:intergenic | 30.0% | |
| !!! | CCTCCCTTTTATTTTTGTTT+TGG | + | chr5_2:57893745-57893764 | Msa0778070:intron | 30.0% |
| CATTATAATGTTGTCAATGG+CGG | - | chr5_2:57893958-57893977 | None:intergenic | 30.0% | |
| GTAGCGAAATTTGAACAAAT+CGG | + | chr5_2:57893977-57893996 | Msa0778070:intron | 30.0% | |
| !! | TATAAAGCGTCGTCAAATAA+CGG | + | chr5_2:57894025-57894044 | Msa0778070:intron | 30.0% |
| CAAGCAAAAGATTTCAAGAA+TGG | - | chr5_2:57894145-57894164 | None:intergenic | 30.0% | |
| CAATGTTGTAACAGACTTAT+TGG | + | chr5_2:57894183-57894202 | Msa0778070:intron | 30.0% | |
| ATGTTGTAACAGACTTATTG+GGG | + | chr5_2:57894185-57894204 | Msa0778070:intron | 30.0% | |
| TCAAAAACCAGATATCTTCT+CGG | + | chr5_2:57894377-57894396 | Msa0778070:intron | 30.0% | |
| AATTAAACAAGTCACCAACA+GGG | - | chr5_2:57894441-57894460 | None:intergenic | 30.0% | |
| TAATTAAACAAGTCACCAAC+AGG | - | chr5_2:57894442-57894461 | None:intergenic | 30.0% | |
| !! | ATGCATATTGCTTTTATGCT+AGG | + | chr5_2:57894605-57894624 | Msa0778070:CDS | 30.0% |
| ! | GGGATGAAAATTTTGTCATT+TGG | - | chr5_2:57895017-57895036 | None:intergenic | 30.0% |
| ! | TGACAAAATTTTCATCCCTT+TGG | + | chr5_2:57895019-57895038 | Msa0778070:CDS | 30.0% |
| TTGTTAAACTTATGTCATCC+AGG | + | chr5_2:57895348-57895367 | Msa0778070:CDS | 30.0% | |
| TGTTAAACTTATGTCATCCA+GGG | + | chr5_2:57895349-57895368 | Msa0778070:CDS | 30.0% | |
| TATAAAAACGAGAAGGTCAA+TGG | + | chr5_2:57895442-57895461 | Msa0778070:CDS | 30.0% | |
| GATTGTATCTCTTATTGCAA+TGG | + | chr5_2:57895518-57895537 | Msa0778070:CDS | 30.0% | |
| !!! | GGGTTTTCCTTATTTTTGTA+AGG | + | chr5_2:57895597-57895616 | Msa0778070:three_prime_UTR | 30.0% |
| TAGAAGATGGAACAAGAACA+TGG | + | chr5_2:57891093-57891112 | Msa0778070:exon | 35.0% | |
| !! | AAGAACATGGAAGCTTTGAA+AGG | + | chr5_2:57891106-57891125 | Msa0778070:CDS | 35.0% |
| !! | GCTTTGAAAGGTTCTTAACA+TGG | + | chr5_2:57891118-57891137 | Msa0778070:CDS | 35.0% |
| TTGTTGAATCTGATATTCCG+AGG | - | chr5_2:57891152-57891171 | None:intergenic | 35.0% | |
| ! | CTAGTCATCAAAGCAGATTT+TGG | - | chr5_2:57891483-57891502 | None:intergenic | 35.0% |
| !! | GACTAGTGAGAGTGTTATTA+TGG | + | chr5_2:57891497-57891516 | Msa0778070:CDS | 35.0% |
| AAGAAGAAAAACCTGAACAG+AGG | - | chr5_2:57891568-57891587 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTGACTTGA+TGG | + | chr5_2:57892257-57892276 | Msa0778070:intron | 35.0% |
| !! | CCTCAATTTGTTGACTTGAT+GGG | + | chr5_2:57892258-57892277 | Msa0778070:intron | 35.0% |
| ATAAATGTCTACGCCTTAAC+AGG | - | chr5_2:57892708-57892727 | None:intergenic | 35.0% | |
| !! | TATGAAAACTGGACTGGTAT+GGG | - | chr5_2:57892822-57892841 | None:intergenic | 35.0% |
| !! | TTATGAAAACTGGACTGGTA+TGG | - | chr5_2:57892823-57892842 | None:intergenic | 35.0% |
| TTGGTTTATGAAAACTGGAC+TGG | - | chr5_2:57892828-57892847 | None:intergenic | 35.0% | |
| TCATAAACCAAATTGCCTGA+AGG | + | chr5_2:57892837-57892856 | Msa0778070:intron | 35.0% | |
| CATAAACCAAATTGCCTGAA+GGG | + | chr5_2:57892838-57892857 | Msa0778070:intron | 35.0% | |
| ATAAGCGCTCATCATGATAA+GGG | + | chr5_2:57893053-57893072 | Msa0778070:intron | 35.0% | |
| AATAAGTTGTGTGTCCAAAC+AGG | + | chr5_2:57893094-57893113 | Msa0778070:intron | 35.0% | |
| TTGGTTCAATAACCAATGGA+AGG | - | chr5_2:57893156-57893175 | None:intergenic | 35.0% | |
| !! | TGGATTGGTTCAATAACCAA+TGG | - | chr5_2:57893160-57893179 | None:intergenic | 35.0% |
| TGTTGGAATCATTGTATGCA+TGG | + | chr5_2:57893188-57893207 | Msa0778070:intron | 35.0% | |
| TGATGAAACCAAATCCTAAC+AGG | - | chr5_2:57893235-57893254 | None:intergenic | 35.0% | |
| !! | GTTTGCTTGTTATACGAAGT+TGG | + | chr5_2:57893337-57893356 | Msa0778070:CDS | 35.0% |
| !! | CTTGTTATACGAAGTTGGTA+AGG | + | chr5_2:57893342-57893361 | Msa0778070:CDS | 35.0% |
| TTAATGTTGTGGTTATCAGG+TGG | + | chr5_2:57893572-57893591 | Msa0778070:intron | 35.0% | |
| AGCTTCTTTCCATTCTGATT+TGG | - | chr5_2:57893637-57893656 | None:intergenic | 35.0% | |
| AAACATCAGTTCTTCCATCA+AGG | - | chr5_2:57893664-57893683 | None:intergenic | 35.0% | |
| ! | TAACATTTAAGGCTTGGGTT+TGG | + | chr5_2:57893697-57893716 | Msa0778070:intron | 35.0% |
| ! | AACATTTAAGGCTTGGGTTT+GGG | + | chr5_2:57893698-57893717 | Msa0778070:intron | 35.0% |
| ! | TGCAATGACGTTTTATATGG+TGG | + | chr5_2:57893920-57893939 | Msa0778070:intron | 35.0% |
| TTATACTGAGTAGCGTAAAG+TGG | - | chr5_2:57894010-57894029 | None:intergenic | 35.0% | |
| TCGCCGATAACATAAAATAG+AGG | - | chr5_2:57894096-57894115 | None:intergenic | 35.0% | |
| ! | AAATCTTTTGCTTGCCTTTC+TGG | + | chr5_2:57894151-57894170 | Msa0778070:intron | 35.0% |
| TTGTTTAATTACGATGCACC+TGG | + | chr5_2:57894451-57894470 | Msa0778070:intron | 35.0% | |
| CAATCAAATGGAGACAAGAA+TGG | + | chr5_2:57894511-57894530 | Msa0778070:CDS | 35.0% | |
| AAATGGAGACAAGAATGGAA+TGG | + | chr5_2:57894516-57894535 | Msa0778070:CDS | 35.0% | |
| GCTAGGACAAATTACAAGAA+AGG | + | chr5_2:57894622-57894641 | Msa0778070:CDS | 35.0% | |
| AAATTACAAGAAAGGCGATC+AGG | + | chr5_2:57894630-57894649 | Msa0778070:CDS | 35.0% | |
| ! | GACAAGCAACAATTTGTTTC+TGG | - | chr5_2:57894769-57894788 | None:intergenic | 35.0% |
| TGTAGACTACGAACTATTAC+AGG | + | chr5_2:57894794-57894813 | Msa0778070:intron | 35.0% | |
| GTAGACTACGAACTATTACA+GGG | + | chr5_2:57894795-57894814 | Msa0778070:intron | 35.0% | |
| ATCTTCATTCCACTGTTTAG+TGG | + | chr5_2:57894886-57894905 | Msa0778070:intron | 35.0% | |
| ! | ATTCCACTGTTTAGTGGATA+AGG | + | chr5_2:57894892-57894911 | Msa0778070:intron | 35.0% |
| AATAGAACCTGGTGAAAACA+AGG | - | chr5_2:57894930-57894949 | None:intergenic | 35.0% | |
| TTCCATAGCATAATAGAACC+TGG | - | chr5_2:57894941-57894960 | None:intergenic | 35.0% | |
| TTTGAGCTTCTTGAACACTA+CGG | + | chr5_2:57894972-57894991 | Msa0778070:CDS | 35.0% | |
| CTATGTACACTTCTACTTCA+TGG | + | chr5_2:57895048-57895067 | Msa0778070:CDS | 35.0% | |
| ! | AGACCTCCTTTTATTATGAG+GGG | - | chr5_2:57895150-57895169 | None:intergenic | 35.0% |
| ! | CAGACCTCCTTTTATTATGA+GGG | - | chr5_2:57895151-57895170 | None:intergenic | 35.0% |
| ! | ACAGACCTCCTTTTATTATG+AGG | - | chr5_2:57895152-57895171 | None:intergenic | 35.0% |
| CATAATAAAAGGAGGTCTGT+CGG | + | chr5_2:57895152-57895171 | Msa0778070:CDS | 35.0% | |
| GTATCGTCTTCAATAGATGT+TGG | - | chr5_2:57895275-57895294 | None:intergenic | 35.0% | |
| CTCTTATTGCAATGGAATAC+TGG | + | chr5_2:57895526-57895545 | Msa0778070:CDS | 35.0% | |
| GAAAGAGCTAGGTTAGAAGA+TGG | + | chr5_2:57891080-57891099 | Msa0778070:exon | 40.0% | |
| TTAACATGGACATCACACCT+CGG | + | chr5_2:57891132-57891151 | Msa0778070:CDS | 40.0% | |
| !! | AAGAGAGTGTTGAGAATGGT+CGG | - | chr5_2:57891184-57891203 | None:intergenic | 40.0% |
| !! | AGGAAAGAGAGTGTTGAGAA+TGG | - | chr5_2:57891188-57891207 | None:intergenic | 40.0% |
| TTTGGAGAATTGTGCAGTAG+AGG | + | chr5_2:57891408-57891427 | Msa0778070:intron | 40.0% | |
| AGAATTGTGCAGTAGAGGTT+TGG | + | chr5_2:57891413-57891432 | Msa0778070:intron | 40.0% | |
| GAATTGTGCAGTAGAGGTTT+GGG | + | chr5_2:57891414-57891433 | Msa0778070:intron | 40.0% | |
| TGCTGTGAGAGATCTTAAGA+GGG | + | chr5_2:57891437-57891456 | Msa0778070:CDS | 40.0% | |
| ! | AATCGGATTTGTTCCTCTGT+TGG | + | chr5_2:57891756-57891775 | Msa0778070:intron | 40.0% |
| AACAGAGTCTGATCAAGAGA+CGG | + | chr5_2:57891865-57891884 | Msa0778070:intron | 40.0% | |
| ACATCACATTGGACTCATGA+AGG | - | chr5_2:57892068-57892087 | None:intergenic | 40.0% | |
| TTGTTCACGTGTTACAACAG+TGG | + | chr5_2:57892129-57892148 | Msa0778070:intron | 40.0% | |
| TATAAAAGGAGACCCTTAGG+AGG | - | chr5_2:57892236-57892255 | None:intergenic | 40.0% | |
| GACTATAAAAGGAGACCCTT+AGG | - | chr5_2:57892239-57892258 | None:intergenic | 40.0% | |
| CCCATCAAGTCAACAAATTG+AGG | - | chr5_2:57892261-57892280 | None:intergenic | 40.0% | |
| GCTACAACTGTGTGTGAATT+CGG | + | chr5_2:57892304-57892323 | Msa0778070:intron | 40.0% | |
| TGGTTTGAGTGTTCAAGTCA+TGG | - | chr5_2:57892590-57892609 | None:intergenic | 40.0% | |
| ACTCAGTCCAGTCAAGATAT+AGG | + | chr5_2:57892630-57892649 | Msa0778070:intron | 40.0% | |
| CTCAGTCCAGTCAAGATATA+GGG | + | chr5_2:57892631-57892650 | Msa0778070:intron | 40.0% | |
| TCTATAACATTGCACCCTTC+AGG | - | chr5_2:57892855-57892874 | None:intergenic | 40.0% | |
| GGTGCAATGTTATAGACCAA+GGG | + | chr5_2:57892859-57892878 | Msa0778070:intron | 40.0% | |
| TTATAGACCAAGGGTCTGTT+TGG | + | chr5_2:57892868-57892887 | Msa0778070:intron | 40.0% | |
| CATAAGCGCTCATCATGATA+AGG | + | chr5_2:57893052-57893071 | Msa0778070:intron | 40.0% | |
| TGTGTCCAAACAGGTCTAAA+TGG | + | chr5_2:57893103-57893122 | Msa0778070:intron | 40.0% | |
| CTTGACCATTTAGACCTGTT+TGG | - | chr5_2:57893111-57893130 | None:intergenic | 40.0% | |
| GAAACCAAATCCTAACAGGT+AGG | - | chr5_2:57893231-57893250 | None:intergenic | 40.0% | |
| !! | TATACGAAGTTGGTAAGGGA+AGG | + | chr5_2:57893347-57893366 | Msa0778070:CDS | 40.0% |
| ! | AGAATGGCGAGGCAAATTTT+AGG | + | chr5_2:57893843-57893862 | Msa0778070:intron | 40.0% |
| ! | GGCTGCAATGACGTTTTATA+TGG | + | chr5_2:57893917-57893936 | Msa0778070:intron | 40.0% |
| ! | ATAATGTTGTCAATGGCGGA+AGG | - | chr5_2:57893954-57893973 | None:intergenic | 40.0% |
| !! | TCGTCAAATAACGGATAGAG+CGG | + | chr5_2:57894034-57894053 | Msa0778070:intron | 40.0% |
| TTATCGGCGATTGACATCAT+TGG | + | chr5_2:57894106-57894125 | Msa0778070:intron | 40.0% | |
| CATTGATCCAAGTACCAGAA+AGG | - | chr5_2:57894168-57894187 | None:intergenic | 40.0% | |
| TCGGACATTGCATATACCAT+GGG | + | chr5_2:57894396-57894415 | Msa0778070:CDS | 40.0% | |
| CATTCTCAGAGACTAACTGA+TGG | + | chr5_2:57894562-57894581 | Msa0778070:CDS | 40.0% | |
| ATCAGGTAGTGCACAATTCT+TGG | + | chr5_2:57894647-57894666 | Msa0778070:intron | 40.0% | |
| ATGCCTTATCCACTAAACAG+TGG | - | chr5_2:57894898-57894917 | None:intergenic | 40.0% | |
| !!! | CAAGTTACCTTGTTTTCACC+AGG | + | chr5_2:57894920-57894939 | Msa0778070:intron | 40.0% |
| CACCAGGTTCTATTATGCTA+TGG | + | chr5_2:57894936-57894955 | Msa0778070:intron | 40.0% | |
| TGTACATAGCAGGTTCCAAA+GGG | - | chr5_2:57895037-57895056 | None:intergenic | 40.0% | |
| ! | GAAGTAGAAGTGTACATAGC+AGG | - | chr5_2:57895047-57895066 | None:intergenic | 40.0% |
| CACTTCTACTTCATGGTCTA+AGG | + | chr5_2:57895055-57895074 | Msa0778070:CDS | 40.0% | |
| TCACTCTATATCCATCCCAA+CGG | + | chr5_2:57895080-57895099 | Msa0778070:CDS | 40.0% | |
| CAACCCCTCATAATAAAAGG+AGG | + | chr5_2:57895144-57895163 | Msa0778070:CDS | 40.0% | |
| TACCTTACTCCTGAATGCAT+TGG | + | chr5_2:57895292-57895311 | Msa0778070:CDS | 40.0% | |
| ATCCAATGCATTCAGGAGTA+AGG | - | chr5_2:57895297-57895316 | None:intergenic | 40.0% | |
| GACTACAATCCAATGCATTC+AGG | - | chr5_2:57895304-57895323 | None:intergenic | 40.0% | |
| ! | GAAGGTATAAACTTCATCCC+TGG | - | chr5_2:57895369-57895388 | None:intergenic | 40.0% |
| AAACGAGAAGGTCAATGGAT+AGG | + | chr5_2:57895447-57895466 | Msa0778070:CDS | 40.0% | |
| TCAACACTCTCTTTCCTCTC+TGG | + | chr5_2:57891191-57891210 | Msa0778070:CDS | 45.0% | |
| CAACACTCTCTTTCCTCTCT+GGG | + | chr5_2:57891192-57891211 | Msa0778070:CDS | 45.0% | |
| GTTTCTACCTTTCCTCACTC+TGG | + | chr5_2:57891228-57891247 | Msa0778070:CDS | 45.0% | |
| GTGCTGTGAGAGATCTTAAG+AGG | + | chr5_2:57891436-57891455 | Msa0778070:CDS | 45.0% | |
| GCTGTGAGAGATCTTAAGAG+GGG | + | chr5_2:57891438-57891457 | Msa0778070:CDS | 45.0% | |
| GTTCCTCTGTTGGTATTCGT+AGG | + | chr5_2:57891766-57891785 | Msa0778070:intron | 45.0% | |
| GTTCCTACGAATACCAACAG+AGG | - | chr5_2:57891772-57891791 | None:intergenic | 45.0% | |
| ATTGTAGGGAGCAGATGATC+TGG | + | chr5_2:57891946-57891965 | Msa0778070:intron | 45.0% | |
| TCGCTCTAGTCCCTTTAGAT+CGG | + | chr5_2:57892021-57892040 | Msa0778070:intron | 45.0% | |
| ! | ATCTCGTTGGTTGGCTGATA+CGG | + | chr5_2:57892282-57892301 | Msa0778070:intron | 45.0% |
| ATGCTCTGATTTCACGTGTC+AGG | - | chr5_2:57892396-57892415 | None:intergenic | 45.0% | |
| AGGTCGTGAGACACTTGAAT+GGG | + | chr5_2:57892453-57892472 | Msa0778070:intron | 45.0% | |
| !! | CTGTGCAAATCAGCTTGTTG+TGG | - | chr5_2:57892480-57892499 | None:intergenic | 45.0% |
| TTGGTGTGACTTGAAAGCCA+AGG | + | chr5_2:57892526-57892545 | Msa0778070:intron | 45.0% | |
| TTAACAGGCTTGACGTTTGG+TGG | - | chr5_2:57892693-57892712 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | + | chr5_2:57892692-57892711 | Msa0778070:intron | 45.0% | |
| !! | GGTGGACTGTAAACTGGTAT+GGG | - | chr5_2:57892746-57892765 | None:intergenic | 45.0% |
| !! | TGGTGGACTGTAAACTGGTA+TGG | - | chr5_2:57892747-57892766 | None:intergenic | 45.0% |
| !! | TGGTTTGGTGGACTGTAAAC+TGG | - | chr5_2:57892752-57892771 | None:intergenic | 45.0% |
| AACAGGCTTGACGTTTGGTT+TGG | - | chr5_2:57892767-57892786 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | + | chr5_2:57892692-57892711 | Msa0778070:intron | 45.0% | |
| ACAAACGTCTACGCCTTAAC+AGG | - | chr5_2:57892784-57892803 | None:intergenic | 45.0% | |
| ATTGCACCCTTCAGGCAATT+TGG | - | chr5_2:57892847-57892866 | None:intergenic | 45.0% | |
| GGGTGCAATGTTATAGACCA+AGG | + | chr5_2:57892858-57892877 | Msa0778070:intron | 45.0% | |
| TGAGCCTACCTGTTAGGATT+TGG | + | chr5_2:57893224-57893243 | Msa0778070:intron | 45.0% | |
| TTGGTAAGGGAAGGACTTCA+AGG | + | chr5_2:57893356-57893375 | Msa0778070:CDS | 45.0% | |
| AGTCGTAACTTTGCGGCAAA+TGG | - | chr5_2:57893399-57893418 | None:intergenic | 45.0% | |
| GCTAGCAAGTCGTAACTTTG+CGG | - | chr5_2:57893406-57893425 | None:intergenic | 45.0% | |
| !! | TACGACTTGCTAGCCATGTT+TGG | + | chr5_2:57893412-57893431 | Msa0778070:CDS | 45.0% |
| ATCAGGTGGATGAAGCTATG+TGG | + | chr5_2:57893586-57893605 | Msa0778070:intron | 45.0% | |
| TCAGGTGGATGAAGCTATGT+GGG | + | chr5_2:57893587-57893606 | Msa0778070:intron | 45.0% | |
| GAAAGAAGCTCATGCCTTGA+TGG | + | chr5_2:57893647-57893666 | Msa0778070:CDS | 45.0% | |
| AGCGTAGCAGTGTGGTTAAA+TGG | + | chr5_2:57893799-57893818 | Msa0778070:intron | 45.0% | |
| GTAGCAGTGTGGTTAAATGG+TGG | + | chr5_2:57893802-57893821 | Msa0778070:intron | 45.0% | |
| GTGTGGTTAAATGGTGGTCA+TGG | + | chr5_2:57893808-57893827 | Msa0778070:intron | 45.0% | |
| TTGTGAATGAATGCCCACCA+TGG | + | chr5_2:57893884-57893903 | Msa0778070:intron | 45.0% | |
| TAAAACGTCATTGCAGCCCA+TGG | - | chr5_2:57893915-57893934 | None:intergenic | 45.0% | |
| GCTATAGCACTGTAGCATAG+AGG | + | chr5_2:57894058-57894077 | Msa0778070:intron | 45.0% | |
| ! | TTGCTTGCCTTTCTGGTACT+TGG | + | chr5_2:57894158-57894177 | Msa0778070:intron | 45.0% |
| GCAATGTCCGAGAAGATATC+TGG | - | chr5_2:57894387-57894406 | None:intergenic | 45.0% | |
| CTCGGACATTGCATATACCA+TGG | + | chr5_2:57894395-57894414 | Msa0778070:CDS | 45.0% | |
| CATATACCATGGGATGAAGC+TGG | + | chr5_2:57894406-57894425 | Msa0778070:CDS | 45.0% | |
| AAACAACCAGCTTCATCCCA+TGG | - | chr5_2:57894415-57894434 | None:intergenic | 45.0% | |
| TAATTACGATGCACCTGGAG+AGG | + | chr5_2:57894456-57894475 | Msa0778070:intron | 45.0% | |
| CTACGTCGTCAATACCAGAT+AGG | - | chr5_2:57894483-57894502 | None:intergenic | 45.0% | |
| TCTCAGAGACTAACTGATGG+TGG | + | chr5_2:57894565-57894584 | Msa0778070:CDS | 45.0% | |
| CTCAGAGACTAACTGATGGT+GGG | + | chr5_2:57894566-57894585 | Msa0778070:CDS | 45.0% | |
| GTGTACATAGCAGGTTCCAA+AGG | - | chr5_2:57895038-57895057 | None:intergenic | 45.0% | |
| ! | GCAAACGAAGGTTTTCCGTT+GGG | - | chr5_2:57895098-57895117 | None:intergenic | 45.0% |
| GGGCAACCCCTCATAATAAA+AGG | + | chr5_2:57895141-57895160 | Msa0778070:CDS | 45.0% | |
| GTCGGACATCTTGCATATTC+TGG | + | chr5_2:57895170-57895189 | Msa0778070:CDS | 45.0% | |
| GGTGGAAATTAGCCGTCTTA+TGG | + | chr5_2:57895468-57895487 | Msa0778070:CDS | 45.0% | |
| GGAAATTAGCCGTCTTATGG+AGG | + | chr5_2:57895471-57895490 | Msa0778070:CDS | 45.0% | |
| ATACCTGAGCCTCCATAAGA+CGG | - | chr5_2:57895483-57895502 | None:intergenic | 45.0% | |
| !! | GTGCGAGTTCTGAAAGAGCT+AGG | + | chr5_2:57891069-57891088 | Msa0778070:five_prime_UTR | 50.0% |
| GCAGAGAGAATAACCCAGAG+AGG | - | chr5_2:57891208-57891227 | None:intergenic | 50.0% | |
| TCTACCTTTCCTCACTCTGG+CGG | + | chr5_2:57891231-57891250 | Msa0778070:CDS | 50.0% | |
| CTCTTCTCTCTCCTCTGTTC+AGG | + | chr5_2:57891554-57891573 | Msa0778070:CDS | 50.0% | |
| TTACAACAGTGGAGCTGCCT+AGG | + | chr5_2:57892140-57892159 | Msa0778070:intron | 50.0% | |
| GTATTCTTGGAGCTCCTCCT+AGG | - | chr5_2:57892160-57892179 | None:intergenic | 50.0% | |
| ATGAGCGTAAGTGCCTCCTA+AGG | + | chr5_2:57892220-57892239 | Msa0778070:intron | 50.0% | |
| TGAGCGTAAGTGCCTCCTAA+GGG | + | chr5_2:57892221-57892240 | Msa0778070:intron | 50.0% | |
| ! | TGACTTGATGGGCATCTCGT+TGG | + | chr5_2:57892269-57892288 | Msa0778070:intron | 50.0% |
| ! | TTGATGGGCATCTCGTTGGT+TGG | + | chr5_2:57892273-57892292 | Msa0778070:intron | 50.0% |
| GCTTATGTCACTGTACTGCG+TGG | + | chr5_2:57892429-57892448 | Msa0778070:intron | 50.0% | |
| CAGGTCGTGAGACACTTGAA+TGG | + | chr5_2:57892452-57892471 | Msa0778070:intron | 50.0% | |
| ! | CTGATTTGCACAGCCCAGTT+GGG | + | chr5_2:57892487-57892506 | Msa0778070:intron | 50.0% |
| ! | TGATTTGCACAGCCCAGTTG+GGG | + | chr5_2:57892488-57892507 | Msa0778070:intron | 50.0% |
| TGAAAGCCAAGGTAGTGCTG+AGG | + | chr5_2:57892537-57892556 | Msa0778070:intron | 50.0% | |
| GTGCTGAGGCTGGACTTTAT+TGG | + | chr5_2:57892551-57892570 | Msa0778070:intron | 50.0% | |
| AGGCTGGACTTTATTGGACG+AGG | + | chr5_2:57892557-57892576 | Msa0778070:intron | 50.0% | |
| ! | CACTCAAACCAGTGCTGAGT+TGG | + | chr5_2:57892599-57892618 | Msa0778070:intron | 50.0% |
| AGCAAGATCCAACTCAGCAC+TGG | - | chr5_2:57892610-57892629 | None:intergenic | 50.0% | |
| GTGGCTCCCTATATCTTGAC+TGG | - | chr5_2:57892640-57892659 | None:intergenic | 50.0% | |
| TCAAGATATAGGGAGCCACC+TGG | + | chr5_2:57892641-57892660 | Msa0778070:intron | 50.0% | |
| GCCTTAACAGGCTTGACGTT+TGG | - | chr5_2:57892696-57892715 | None:intergenic | 50.0% | |
| !! | AGGCTTGACGTTTGGTTTGG+TGG | - | chr5_2:57892764-57892783 | None:intergenic | 50.0% |
| GCCTTAACAGGCTTGACGTT+TGG | - | chr5_2:57892696-57892715 | None:intergenic | 50.0% | |
| GACCAAGGGTCTGTTTGGAT+TGG | + | chr5_2:57892873-57892892 | Msa0778070:intron | 50.0% | |
| AGCCAATCCAAACAGACCCT+TGG | - | chr5_2:57892878-57892897 | None:intergenic | 50.0% | |
| !! | AGGCATTGAGCCTACCTGTT+AGG | + | chr5_2:57893218-57893237 | Msa0778070:intron | 50.0% |
| GTAAGGGAAGGACTTCAAGG+TGG | + | chr5_2:57893359-57893378 | Msa0778070:CDS | 50.0% | |
| AACTTTGCGGCAAATGGACG+AGG | - | chr5_2:57893393-57893412 | None:intergenic | 50.0% | |
| GTTGCTATAGCGTAGCAGTG+TGG | + | chr5_2:57893791-57893810 | Msa0778070:intron | 50.0% | |
| GCTGGTTGTTTATGCCCTGT+TGG | + | chr5_2:57894424-57894443 | Msa0778070:CDS | 50.0% | |
| ATACCAGATAGGTCCTCTCC+AGG | - | chr5_2:57894472-57894491 | None:intergenic | 50.0% | |
| ! | ACGAAGGTTTTCCGTTGGGA+TGG | - | chr5_2:57895094-57895113 | None:intergenic | 50.0% |
| ! | CGCAAACGAAGGTTTTCCGT+TGG | - | chr5_2:57895099-57895118 | None:intergenic | 50.0% |
| TACTAGCTGCGTTACGACTG+TGG | + | chr5_2:57895120-57895139 | Msa0778070:CDS | 50.0% | |
| ACTAGCTGCGTTACGACTGT+GGG | + | chr5_2:57895121-57895140 | Msa0778070:CDS | 50.0% | |
| CGAGAAGGTCAATGGATAGG+TGG | + | chr5_2:57895450-57895469 | Msa0778070:CDS | 50.0% | |
| CTACCTTTCCTCACTCTGGC+GGG | + | chr5_2:57891232-57891251 | Msa0778070:CDS | 55.0% | |
| TTACCCGCCAGAGTGAGGAA+AGG | - | chr5_2:57891238-57891257 | None:intergenic | 55.0% | |
| TCAGCTTCGCATGCCCTGTA+CGG | - | chr5_2:57892341-57892360 | None:intergenic | 55.0% | |
| ATGTCACTGTACTGCGTGGC+AGG | + | chr5_2:57892433-57892452 | Msa0778070:intron | 55.0% | |
| !! | GCTGATTTGCACAGCCCAGT+TGG | + | chr5_2:57892486-57892505 | Msa0778070:intron | 55.0% |
| GATTTGCACAGCCCAGTTGG+GGG | + | chr5_2:57892489-57892508 | Msa0778070:intron | 55.0% | |
| GTATAGACGACGATGCCAGG+TGG | - | chr5_2:57892659-57892678 | None:intergenic | 55.0% | |
| CTGGTATAGACGACGATGCC+AGG | - | chr5_2:57892662-57892681 | None:intergenic | 55.0% | |
| !! | ACGTTTGGTGGACTGTGGTC+TGG | - | chr5_2:57892681-57892700 | None:intergenic | 55.0% |
| !! | GCTTGACGTTTGGTGGACTG+TGG | - | chr5_2:57892686-57892705 | None:intergenic | 55.0% |
| TGCGGCAAATGGACGAGGTA+AGG | - | chr5_2:57893388-57893407 | None:intergenic | 55.0% | |
| TTGGGTTTGGGCTGCTGCAA+CGG | + | chr5_2:57893710-57893729 | Msa0778070:intron | 55.0% | |
| TTTGCCTCGCCATTCTGCCA+TGG | - | chr5_2:57893839-57893858 | None:intergenic | 55.0% | |
| GCAGCTAGTAGCGCAAACGA+AGG | - | chr5_2:57895110-57895129 | None:intergenic | 55.0% | |
| TAGCCGTCTTATGGAGGCTC+AGG | + | chr5_2:57895477-57895496 | Msa0778070:CDS | 55.0% | |
| GTGAGTTACCCGCCAGAGTG+AGG | - | chr5_2:57891243-57891262 | None:intergenic | 60.0% | |
| CAACAGTGGAGCTGCCTAGG+AGG | + | chr5_2:57892143-57892162 | Msa0778070:intron | 60.0% | |
| GGTTGCAGCTCGTCCGTACA+GGG | + | chr5_2:57892325-57892344 | Msa0778070:intron | 60.0% | |
| ! | AGCCAAGGTAGTGCTGAGGC+TGG | + | chr5_2:57892541-57892560 | Msa0778070:intron | 60.0% |
| GTCCAGCCTCAGCACTACCT+TGG | - | chr5_2:57892546-57892565 | None:intergenic | 60.0% | |
| !! | ATGGTGCCGCCATGGCAGAA+TGG | + | chr5_2:57893827-57893846 | Msa0778070:intron | 60.0% |
| TGCCCACCATGGAGTCTCCA+TGG | + | chr5_2:57893895-57893914 | Msa0778070:intron | 60.0% | |
| GCCCACCATGGAGTCTCCAT+GGG | + | chr5_2:57893896-57893915 | Msa0778070:intron | 60.0% | |
| GCCCATGGAGACTCCATGGT+GGG | - | chr5_2:57893900-57893919 | None:intergenic | 60.0% | |
| AGCCCATGGAGACTCCATGG+TGG | - | chr5_2:57893901-57893920 | None:intergenic | 60.0% | |
| TGCAGCCCATGGAGACTCCA+TGG | - | chr5_2:57893904-57893923 | None:intergenic | 60.0% | |
| GCACCTGGAGAGGACCTATC+TGG | + | chr5_2:57894466-57894485 | Msa0778070:intron | 60.0% | |
| CGGTTGCAGCTCGTCCGTAC+AGG | + | chr5_2:57892324-57892343 | Msa0778070:intron | 65.0% | |
| TGCCAAGCACGCCCCCAACT+GGG | - | chr5_2:57892503-57892522 | None:intergenic | 65.0% | |
| ATGCCAAGCACGCCCCCAAC+TGG | - | chr5_2:57892504-57892523 | None:intergenic | 65.0% | |
| ! | AGTTGGGGGCGTGCTTGGCA+TGG | + | chr5_2:57892503-57892522 | Msa0778070:intron | 65.0% |
| !! | TGGTGGTCATGGTGCCGCCA+TGG | + | chr5_2:57893819-57893838 | Msa0778070:intron | 65.0% |
| GCCTCGCCATTCTGCCATGG+CGG | - | chr5_2:57893836-57893855 | None:intergenic | 65.0% | |
| ! | AGCCCAGTTGGGGGCGTGCT+TGG | + | chr5_2:57892498-57892517 | Msa0778070:intron | 70.0% |
| ! | GGGGGCGTGCTTGGCATGGT+TGG | + | chr5_2:57892507-57892526 | Msa0778070:intron | 70.0% |
| GCCGCCATGGCAGAATGGCG+AGG | + | chr5_2:57893832-57893851 | Msa0778070:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 57891047 | 57895632 | 57891047 | ID=Msa0778070;Name=Msa0778070 |
| chr5_2 | mRNA | 57891047 | 57895632 | 57891047 | ID=Msa0778070-mRNA-1;Parent=Msa0778070;Name=Msa0778070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=52|0.66|0.57|1|0.66|0.57|7|67|464 |
| chr5_2 | exon | 57891047 | 57891253 | 57891047 | ID=Msa0778070-mRNA-1:exon:17119;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57891425 | 57891575 | 57891425 | ID=Msa0778070-mRNA-1:exon:17120;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57893328 | 57893459 | 57893328 | ID=Msa0778070-mRNA-1:exon:17121;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57893591 | 57893691 | 57893591 | ID=Msa0778070-mRNA-1:exon:17122;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57894388 | 57894445 | 57894388 | ID=Msa0778070-mRNA-1:exon:17123;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57894478 | 57894651 | 57894478 | ID=Msa0778070-mRNA-1:exon:17124;Parent=Msa0778070-mRNA-1 |
| chr5_2 | exon | 57894942 | 57895632 | 57894942 | ID=Msa0778070-mRNA-1:exon:17125;Parent=Msa0778070-mRNA-1 |
| chr5_2 | five_prime_UTR | 57891047 | 57891098 | 57891047 | ID=Msa0778070-mRNA-1:five_prime_utr;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57891099 | 57891253 | 57891099 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57891425 | 57891575 | 57891425 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57893328 | 57893459 | 57893328 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57893591 | 57893691 | 57893591 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57894388 | 57894445 | 57894388 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57894478 | 57894651 | 57894478 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | CDS | 57894942 | 57895565 | 57894942 | ID=Msa0778070-mRNA-1:cds;Parent=Msa0778070-mRNA-1 |
| chr5_2 | three_prime_UTR | 57895566 | 57895632 | 57895566 | ID=Msa0778070-mRNA-1:three_prime_utr;Parent=Msa0778070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
