Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779060 | XP_003616378.1 | 96.000 | 375 | 15 | 0 | 1 | 375 | 1 | 375 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779060 | sp|Q8GWV5|PUB3_ARATH | 34.768 | 302 | 186 | 7 | 2 | 298 | 454 | 749 | 1.98e-33 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779060 | G7KBN3 | 96.000 | 375 | 15 | 0 | 1 | 375 | 1 | 375 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa0779060 | 0.800638 | 1.312222e-48 | -8.615850e-47 |
| Msa0779060 | Msa1082500 | 0.813208 | 2.874975e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779060 | MtrunA17_Chr5g0435041 | 96.000 | 375 | 15 | 0 | 1 | 375 | 1 | 375 | 0.0 | 712 |
| Msa0779060 | MtrunA17_Chr3g0111451 | 74.451 | 364 | 92 | 1 | 12 | 375 | 33 | 395 | 5.52e-173 | 487 |
| Msa0779060 | MtrunA17_Chr5g0429231 | 47.635 | 296 | 151 | 2 | 31 | 324 | 45 | 338 | 8.69e-77 | 241 |
| Msa0779060 | MtrunA17_Chr6g0449461 | 34.259 | 324 | 201 | 7 | 24 | 340 | 6 | 324 | 2.97e-45 | 158 |
| Msa0779060 | MtrunA17_Chr1g0183781 | 34.021 | 291 | 182 | 6 | 11 | 298 | 431 | 714 | 5.43e-38 | 144 |
| Msa0779060 | MtrunA17_Chr7g0261371 | 33.451 | 284 | 181 | 5 | 16 | 297 | 510 | 787 | 6.60e-34 | 133 |
| Msa0779060 | MtrunA17_Chr3g0137061 | 32.857 | 280 | 170 | 7 | 30 | 297 | 121 | 394 | 1.27e-32 | 127 |
| Msa0779060 | MtrunA17_Chr1g0152561 | 33.700 | 273 | 174 | 5 | 27 | 297 | 68 | 335 | 1.97e-32 | 124 |
| Msa0779060 | MtrunA17_Chr3g0134761 | 33.948 | 271 | 168 | 6 | 33 | 297 | 64 | 329 | 2.31e-32 | 124 |
| Msa0779060 | MtrunA17_Chr3g0106931 | 32.959 | 267 | 171 | 5 | 33 | 297 | 566 | 826 | 8.18e-29 | 118 |
| Msa0779060 | MtrunA17_Chr7g0237931 | 32.567 | 261 | 167 | 5 | 38 | 296 | 352 | 605 | 1.22e-28 | 117 |
| Msa0779060 | MtrunA17_Chr1g0149941 | 28.412 | 359 | 216 | 8 | 30 | 355 | 184 | 534 | 1.67e-28 | 116 |
| Msa0779060 | MtrunA17_Chr2g0284461 | 32.979 | 282 | 172 | 8 | 31 | 306 | 407 | 677 | 4.28e-28 | 115 |
| Msa0779060 | MtrunA17_Chr8g0377151 | 32.895 | 228 | 143 | 5 | 74 | 297 | 488 | 709 | 1.74e-23 | 102 |
| Msa0779060 | MtrunA17_Chr4g0031431 | 27.241 | 290 | 166 | 4 | 46 | 294 | 339 | 624 | 2.11e-23 | 102 |
| Msa0779060 | MtrunA17_Chr2g0290151 | 29.730 | 259 | 137 | 5 | 85 | 302 | 200 | 454 | 4.61e-21 | 94.4 |
| Msa0779060 | MtrunA17_Chr7g0248251 | 29.134 | 254 | 141 | 7 | 85 | 300 | 392 | 644 | 3.11e-19 | 89.4 |
| Msa0779060 | MtrunA17_Chr3g0122721 | 33.040 | 227 | 141 | 6 | 76 | 298 | 489 | 708 | 4.34e-19 | 89.4 |
| Msa0779060 | MtrunA17_Chr4g0044411 | 27.857 | 280 | 157 | 4 | 59 | 297 | 372 | 647 | 7.33e-19 | 88.2 |
| Msa0779060 | MtrunA17_Chr1g0199321 | 26.578 | 301 | 165 | 7 | 57 | 314 | 342 | 629 | 2.06e-18 | 87.0 |
| Msa0779060 | MtrunA17_Chr8g0373031 | 28.415 | 183 | 126 | 2 | 120 | 302 | 536 | 713 | 1.12e-16 | 81.6 |
| Msa0779060 | MtrunA17_Chr7g0234671 | 27.407 | 270 | 178 | 8 | 37 | 296 | 188 | 449 | 4.55e-13 | 70.1 |
| Msa0779060 | MtrunA17_Chr5g0413681 | 27.575 | 301 | 193 | 11 | 17 | 298 | 372 | 666 | 4.61e-13 | 70.5 |
| Msa0779060 | MtrunA17_Chr5g0404311 | 25.225 | 222 | 120 | 3 | 79 | 299 | 536 | 712 | 7.26e-13 | 70.1 |
| Msa0779060 | MtrunA17_Chr4g0059201 | 24.573 | 293 | 211 | 7 | 27 | 312 | 429 | 718 | 2.22e-11 | 65.5 |
| Msa0779060 | MtrunA17_Chr7g0275081 | 26.038 | 265 | 183 | 5 | 38 | 294 | 189 | 448 | 2.83e-11 | 64.7 |
| Msa0779060 | MtrunA17_Chr2g0283691 | 24.561 | 342 | 242 | 11 | 20 | 355 | 86 | 417 | 6.65e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779060 | AT3G03440.1 | 67.751 | 338 | 106 | 3 | 20 | 355 | 66 | 402 | 1.11e-141 | 409 |
| Msa0779060 | AT4G12710.1 | 46.667 | 360 | 170 | 7 | 25 | 375 | 53 | 399 | 6.29e-83 | 258 |
| Msa0779060 | AT5G14510.1 | 36.970 | 330 | 182 | 8 | 24 | 340 | 6 | 322 | 4.61e-49 | 168 |
| Msa0779060 | AT3G54790.2 | 34.768 | 302 | 186 | 7 | 2 | 298 | 418 | 713 | 1.42e-34 | 135 |
| Msa0779060 | AT3G54790.3 | 34.768 | 302 | 186 | 7 | 2 | 298 | 454 | 749 | 2.01e-34 | 135 |
| Msa0779060 | AT3G54790.1 | 34.768 | 302 | 186 | 7 | 2 | 298 | 454 | 749 | 2.01e-34 | 135 |
| Msa0779060 | AT2G23140.3 | 32.028 | 281 | 183 | 5 | 20 | 298 | 354 | 628 | 9.59e-33 | 129 |
| Msa0779060 | AT2G23140.5 | 32.028 | 281 | 183 | 5 | 20 | 298 | 354 | 628 | 9.59e-33 | 129 |
| Msa0779060 | AT2G23140.1 | 32.028 | 281 | 183 | 5 | 20 | 298 | 546 | 820 | 1.01e-32 | 130 |
| Msa0779060 | AT2G23140.2 | 32.028 | 281 | 183 | 5 | 20 | 298 | 543 | 817 | 1.04e-32 | 130 |
| Msa0779060 | AT2G23140.4 | 32.028 | 281 | 183 | 5 | 20 | 298 | 543 | 817 | 1.04e-32 | 130 |
| Msa0779060 | AT3G01400.1 | 34.082 | 267 | 169 | 5 | 33 | 297 | 78 | 339 | 2.95e-32 | 124 |
| Msa0779060 | AT5G67340.1 | 31.987 | 297 | 189 | 7 | 8 | 297 | 407 | 697 | 1.47e-31 | 126 |
| Msa0779060 | AT5G67340.2 | 31.987 | 297 | 189 | 7 | 8 | 297 | 407 | 697 | 1.47e-31 | 126 |
| Msa0779060 | AT5G58680.1 | 35.094 | 265 | 162 | 7 | 37 | 297 | 80 | 338 | 5.37e-31 | 121 |
| Msa0779060 | AT2G25130.1 | 31.325 | 332 | 197 | 10 | 41 | 355 | 132 | 449 | 5.83e-30 | 120 |
| Msa0779060 | AT4G31890.3 | 31.624 | 351 | 207 | 13 | 30 | 355 | 150 | 492 | 4.61e-29 | 118 |
| Msa0779060 | AT4G31890.2 | 31.624 | 351 | 207 | 13 | 30 | 355 | 150 | 492 | 4.61e-29 | 118 |
| Msa0779060 | AT4G31890.1 | 31.624 | 351 | 207 | 13 | 30 | 355 | 150 | 492 | 4.61e-29 | 118 |
| Msa0779060 | AT1G29340.1 | 30.769 | 338 | 210 | 10 | 2 | 330 | 389 | 711 | 2.25e-27 | 114 |
| Msa0779060 | AT3G46510.1 | 32.103 | 271 | 176 | 6 | 26 | 294 | 361 | 625 | 5.29e-27 | 113 |
| Msa0779060 | AT1G71020.2 | 30.897 | 301 | 198 | 8 | 4 | 299 | 178 | 473 | 6.28e-24 | 103 |
| Msa0779060 | AT1G71020.1 | 30.897 | 301 | 198 | 8 | 4 | 299 | 326 | 621 | 8.61e-24 | 103 |
| Msa0779060 | AT2G28830.1 | 30.798 | 263 | 167 | 8 | 38 | 293 | 303 | 557 | 8.58e-23 | 100 |
| Msa0779060 | AT3G54850.1 | 29.699 | 266 | 178 | 6 | 38 | 300 | 365 | 624 | 1.83e-22 | 99.8 |
| Msa0779060 | AT1G24330.1 | 32.751 | 229 | 142 | 7 | 74 | 298 | 486 | 706 | 1.01e-21 | 97.4 |
| Msa0779060 | AT1G24330.2 | 32.751 | 229 | 142 | 7 | 74 | 298 | 486 | 706 | 1.01e-21 | 97.4 |
| Msa0779060 | AT1G67530.2 | 31.858 | 226 | 149 | 4 | 74 | 298 | 486 | 707 | 1.79e-21 | 96.7 |
| Msa0779060 | AT1G67530.1 | 31.858 | 226 | 149 | 4 | 74 | 298 | 486 | 707 | 1.79e-21 | 96.7 |
| Msa0779060 | AT1G67530.4 | 31.858 | 226 | 149 | 4 | 74 | 298 | 486 | 707 | 1.79e-21 | 96.7 |
| Msa0779060 | AT4G16490.1 | 29.183 | 257 | 135 | 6 | 85 | 298 | 210 | 462 | 2.12e-20 | 92.8 |
| Msa0779060 | AT1G27910.1 | 30.233 | 301 | 186 | 9 | 12 | 298 | 414 | 704 | 4.43e-19 | 89.7 |
| Msa0779060 | AT1G23030.1 | 26.165 | 279 | 162 | 5 | 60 | 297 | 333 | 608 | 2.66e-17 | 84.0 |
| Msa0779060 | AT1G23030.1 | 26.943 | 193 | 137 | 3 | 59 | 250 | 415 | 604 | 6.00e-12 | 67.4 |
| Msa0779060 | AT5G42340.1 | 28.235 | 255 | 142 | 5 | 85 | 300 | 406 | 658 | 6.46e-17 | 82.8 |
| Msa0779060 | AT1G60190.1 | 27.778 | 288 | 193 | 11 | 23 | 298 | 380 | 664 | 2.27e-16 | 81.3 |
| Msa0779060 | AT3G07360.5 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.3 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.9 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.6 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.2 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.8 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.10 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.7 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.4 | 27.174 | 276 | 187 | 8 | 32 | 299 | 49 | 318 | 1.04e-14 | 74.7 |
| Msa0779060 | AT3G07360.1 | 27.174 | 276 | 187 | 8 | 32 | 299 | 184 | 453 | 1.58e-14 | 75.1 |
| Msa0779060 | AT5G65200.1 | 24.242 | 231 | 159 | 5 | 78 | 298 | 286 | 510 | 6.19e-11 | 64.3 |
Find 82 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAATGTTAATAATAAA+AGG | 0.203810 | 5_2:-60230094 | None:intergenic |
| ATTACACCTTCTCTTAAAAT+TGG | 0.221645 | 5_2:-60230331 | None:intergenic |
| GCGGCAACGGTGGGAGGTTT+TGG | 0.254979 | 5_2:-60227376 | None:intergenic |
| ATCATGGTGTGTTGATAAAT+TGG | 0.258088 | 5_2:-60230038 | None:intergenic |
| GTCCCATGAACCTGCTCTTC+TGG | 0.312181 | 5_2:+60227458 | Msa0779060:CDS |
| GTACGGACACCGATGTATTT+TGG | 0.314328 | 5_2:-60227278 | None:intergenic |
| TTGTAGAGAGAGAGGTTGTT+TGG | 0.322732 | 5_2:-60227209 | None:intergenic |
| GTAGTCGAAGTTCTTGAAAA+TGG | 0.331661 | 5_2:+60230232 | Msa0779060:CDS |
| TGAAATGGTTCAAGTTAGTA+TGG | 0.349676 | 5_2:+60230552 | Msa0779060:CDS |
| AAAGAAGATGTTAGATGAAA+TGG | 0.352239 | 5_2:+60230537 | Msa0779060:CDS |
| CAGCATCAGATTTAGCTTGT+TGG | 0.364942 | 5_2:-60230003 | None:intergenic |
| ATTGATGGTGATGAACAATT+TGG | 0.365619 | 5_2:+60230508 | Msa0779060:CDS |
| ACCGCCTTCTTCGGATGTTA+AGG | 0.365960 | 5_2:-60230200 | None:intergenic |
| CTTGTTACCATTCTTAGAAA+TGG | 0.368170 | 5_2:+60229977 | Msa0779060:CDS |
| AGCTTTGGAGCTACTCTATC+TGG | 0.368730 | 5_2:+60227305 | Msa0779060:CDS |
| GACTTGAGAAAATTAACTAT+TGG | 0.372685 | 5_2:-60229851 | None:intergenic |
| TTAAGAGAAGGTGTAATTCC+AGG | 0.376596 | 5_2:+60230337 | Msa0779060:CDS |
| ACAGCATGTTCTTTACTTTG+TGG | 0.377881 | 5_2:-60230259 | None:intergenic |
| CGCAAGAACACCGCCTTCTT+CGG | 0.381562 | 5_2:-60230209 | None:intergenic |
| GTCGGAGCTGGCGGCGGCAA+CGG | 0.383307 | 5_2:-60227389 | None:intergenic |
| TGCTTTAATAGAGTCTTTAG+TGG | 0.386580 | 5_2:+60230156 | Msa0779060:CDS |
| AGAGAGAGGTTGTTTGGAAG+AGG | 0.393128 | 5_2:-60227203 | None:intergenic |
| AAGTGATAGGTGTAAATATA+AGG | 0.393646 | 5_2:+60230306 | Msa0779060:CDS |
| TCAAGGAACAACAAAGTCTA+AGG | 0.399442 | 5_2:+60230378 | Msa0779060:CDS |
| TTGGCTTCCATTTCTAAGAA+TGG | 0.406961 | 5_2:-60229984 | None:intergenic |
| TTCTCCGATGTTTCCATTGG+TGG | 0.407467 | 5_2:-60227234 | None:intergenic |
| GAGCTGGCGGCGGCAACGGT+GGG | 0.410464 | 5_2:-60227385 | None:intergenic |
| ATGTTAATAATAAAAGGAAT+TGG | 0.410982 | 5_2:-60230088 | None:intergenic |
| AGAAGTGATGATTGGTTTGT+TGG | 0.411488 | 5_2:-60229936 | None:intergenic |
| GAATTCTCCTCCAACGTTAG+AGG | 0.416491 | 5_2:+60227254 | Msa0779060:CDS |
| TTTGAGACATTTACAGCAAA+GGG | 0.418468 | 5_2:+60230582 | Msa0779060:CDS |
| TTAAGCAAGGCCAGAAGAGC+AGG | 0.422183 | 5_2:-60227468 | None:intergenic |
| CAACCAGGACATGAAAATTC+AGG | 0.424400 | 5_2:+60227329 | Msa0779060:CDS |
| CTTCTTGAACTAACTGTTCA+AGG | 0.427294 | 5_2:+60230361 | Msa0779060:CDS |
| GGAGCTGGCGGCGGCAACGG+TGG | 0.431744 | 5_2:-60227386 | None:intergenic |
| AGCTAAATCTGATGCTGTAA+TGG | 0.432983 | 5_2:+60230009 | Msa0779060:CDS |
| AGGCCAGAAGAGCAGGTTCA+TGG | 0.438444 | 5_2:-60227461 | None:intergenic |
| AAGTAACAGTTATAAGAGAA+AGG | 0.440139 | 5_2:-60227176 | None:intergenic |
| GAGCGGTTGTTGGTTGAGAA+AGG | 0.468482 | 5_2:-60227139 | None:intergenic |
| GGTGAGACGGCGGATGTCCT+TGG | 0.472052 | 5_2:-60227355 | None:intergenic |
| GAGTAATAGCTTGTCGGAGC+TGG | 0.473174 | 5_2:-60227401 | None:intergenic |
| GATATTATATCTCAGATTGA+TGG | 0.474678 | 5_2:+60230493 | Msa0779060:CDS |
| ACATATAGAGGAGCGGTTGT+TGG | 0.483724 | 5_2:-60227149 | None:intergenic |
| TAGCTTGTCGGAGCTGGCGG+CGG | 0.490390 | 5_2:-60227395 | None:intergenic |
| ACAGTTAGTTCAAGAAGTCC+TGG | 0.496327 | 5_2:-60230355 | None:intergenic |
| GTTTGATAAGAAGTGATGAT+TGG | 0.496577 | 5_2:-60229944 | None:intergenic |
| AAAATCAACATTGTGGAAGC+TGG | 0.496822 | 5_2:+60229818 | Msa0779060:CDS |
| TGAGAATGTGTCAAAGTGAT+AGG | 0.502922 | 5_2:+60230293 | Msa0779060:CDS |
| ATTTCCTTAACATCCGAAGA+AGG | 0.509037 | 5_2:+60230196 | Msa0779060:CDS |
| CTGGCGGCGGCAACGGTGGG+AGG | 0.511464 | 5_2:-60227382 | None:intergenic |
| GAATTCTCCGATGTTTCCAT+TGG | 0.516431 | 5_2:-60227237 | None:intergenic |
| GGTGTCCGTACAGAGAGCTT+TGG | 0.521089 | 5_2:+60227290 | Msa0779060:CDS |
| GGGACTCCGGCGAGTCTACT+CGG | 0.527130 | 5_2:-60227440 | None:intergenic |
| CATGAAAATTCAGGCTGCCA+AGG | 0.536555 | 5_2:+60227338 | Msa0779060:CDS |
| CAAAGTAAAGAACATGCTGT+TGG | 0.537288 | 5_2:+60230262 | Msa0779060:CDS |
| CAAGTGGAGTAATAGCTTGT+CGG | 0.540418 | 5_2:-60227407 | None:intergenic |
| GTATAGTGTTGAGGTTATCA+TGG | 0.540869 | 5_2:-60230054 | None:intergenic |
| TCTTTAGTGGATCATGAGAA+AGG | 0.542705 | 5_2:+60230169 | Msa0779060:CDS |
| GGCCAGAAGAGCAGGTTCAT+GGG | 0.543595 | 5_2:-60227460 | None:intergenic |
| CTATAATTTAGAAGAAACTT+CGG | 0.546600 | 5_2:-60230650 | None:intergenic |
| GAGAAAGGAGACACATATAG+AGG | 0.549679 | 5_2:-60227161 | None:intergenic |
| GAAACAAGATGTGAGATTGA+AGG | 0.549792 | 5_2:+60230445 | Msa0779060:CDS |
| CGGCGAGTCTACTCGGAGCA+TGG | 0.551320 | 5_2:-60227433 | None:intergenic |
| CTAAGAATGGTAACAAGAAG+AGG | 0.551472 | 5_2:-60229971 | None:intergenic |
| GTTTGAGACATTTACAGCAA+AGG | 0.559433 | 5_2:+60230581 | Msa0779060:CDS |
| TTGATTCTAGTATAGTGTTG+AGG | 0.561677 | 5_2:-60230063 | None:intergenic |
| TCTCTCTACAATTCCACCAA+TGG | 0.561760 | 5_2:+60227221 | Msa0779060:exon |
| TAATAGCTTGTCGGAGCTGG+CGG | 0.562343 | 5_2:-60227398 | None:intergenic |
| CGAAGAAGGCGGTGTTCTTG+CGG | 0.566758 | 5_2:+60230210 | Msa0779060:CDS |
| TAGCTCCAAAGCTCTCTGTA+CGG | 0.590033 | 5_2:-60227295 | None:intergenic |
| TAGGAACAAAATCAACATTG+TGG | 0.594415 | 5_2:+60229811 | Msa0779060:intron |
| TGGTGGAATTGTAGAGAGAG+AGG | 0.603313 | 5_2:-60227217 | None:intergenic |
| AGAGCAGGTTCATGGGACTC+CGG | 0.613573 | 5_2:-60227453 | None:intergenic |
| GCTACTCTATCTGGACAACC+AGG | 0.614408 | 5_2:+60227314 | Msa0779060:CDS |
| AATTCCACCAATGGAAACAT+CGG | 0.616029 | 5_2:+60227230 | Msa0779060:exon |
| TTGAACAGCGAGGTTAAGCA+AGG | 0.630349 | 5_2:-60227481 | None:intergenic |
| ACTCGGAGCATGGAAACAAG+TGG | 0.639813 | 5_2:-60227423 | None:intergenic |
| TCCTTAACATCCGAAGAAGG+CGG | 0.644529 | 5_2:+60230199 | Msa0779060:CDS |
| AGTAATAGACACATCACTTG+TGG | 0.644947 | 5_2:-60230617 | None:intergenic |
| CATGCTCCGAGTAGACTCGC+CGG | 0.662160 | 5_2:+60227434 | Msa0779060:CDS |
| AGGAGACACATATAGAGGAG+CGG | 0.681186 | 5_2:-60227156 | None:intergenic |
| GTTAGAGGACCAAAATACAT+CGG | 0.717921 | 5_2:+60227269 | Msa0779060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAACCATAAATTTTAT+AGG | + | chr5_2:60228934-60228953 | Msa0779060:intron | 10.0% |
| !!! | AAATGAAGATTAAATTATTT+TGG | + | chr5_2:60229126-60229145 | Msa0779060:intron | 10.0% |
| !!! | TTTTGCTATTCAATTTTAAA+TGG | + | chr5_2:60227559-60227578 | Msa0779060:intron | 15.0% |
| !! | CAATACATTAATATTGTTTA+AGG | - | chr5_2:60227853-60227872 | None:intergenic | 15.0% |
| !! | AAAATAATCACAATTAAGAA+AGG | - | chr5_2:60227918-60227937 | None:intergenic | 15.0% |
| !! | TTAGTATCATCTATTTATAT+AGG | + | chr5_2:60228138-60228157 | Msa0779060:intron | 15.0% |
| !! | TAGTATCATCTATTTATATA+GGG | + | chr5_2:60228139-60228158 | Msa0779060:intron | 15.0% |
| !! | ACTAATATAAGGAATATATA+AGG | - | chr5_2:60228221-60228240 | None:intergenic | 15.0% |
| !! | TAAGAAGAAAAAAAATCTAA+AGG | - | chr5_2:60228467-60228486 | None:intergenic | 15.0% |
| !! | TGGAATTAAAATAATCTTAT+TGG | - | chr5_2:60228624-60228643 | None:intergenic | 15.0% |
| !!! | GACAAATTTTTCTTTTAAAA+AGG | + | chr5_2:60228810-60228829 | Msa0779060:intron | 15.0% |
| !! | AATTAAGCCTATAAAATTTA+TGG | - | chr5_2:60228944-60228963 | None:intergenic | 15.0% |
| !! | ATAGAACATTTATATAAGTA+TGG | - | chr5_2:60229363-60229382 | None:intergenic | 15.0% |
| !!! | ATGATATATTTTCTAATCAT+TGG | + | chr5_2:60229580-60229599 | Msa0779060:intron | 15.0% |
| !!! | TAATTTGAACCTTTTTTTAT+AGG | + | chr5_2:60229792-60229811 | Msa0779060:intron | 15.0% |
| !! | ATGTTAATAATAAAAGGAAT+TGG | - | chr5_2:60230091-60230110 | None:intergenic | 15.0% |
| !! | TTGAGAATGTTAATAATAAA+AGG | - | chr5_2:60230097-60230116 | None:intergenic | 15.0% |
| !! | TTGAATAGCAAAAAAGAAAA+CGG | - | chr5_2:60227552-60227571 | None:intergenic | 20.0% |
| !!! | TTTTCAAGTAGATTATTTAG+AGG | + | chr5_2:60227584-60227603 | Msa0779060:intron | 20.0% |
| !!! | TTATCAATTTTTTCTCCAAT+TGG | + | chr5_2:60227792-60227811 | Msa0779060:intron | 20.0% |
| !!! | TATCAATTTTTTCTCCAATT+GGG | + | chr5_2:60227793-60227812 | Msa0779060:intron | 20.0% |
| !!! | TATTGTTATTGATTTGTTGA+AGG | + | chr5_2:60227868-60227887 | Msa0779060:intron | 20.0% |
| !!! | ATTGTTATTGATTTGTTGAA+GGG | + | chr5_2:60227869-60227888 | Msa0779060:intron | 20.0% |
| !!! | TTGTGATTATTTTCTATTCT+TGG | + | chr5_2:60227925-60227944 | Msa0779060:intron | 20.0% |
| !! | AGACATAATAACATATGATA+TGG | + | chr5_2:60228275-60228294 | Msa0779060:intron | 20.0% |
| !! | GACATAATAACATATGATAT+GGG | + | chr5_2:60228276-60228295 | Msa0779060:intron | 20.0% |
| !! | ACATAATAACATATGATATG+GGG | + | chr5_2:60228277-60228296 | Msa0779060:intron | 20.0% |
| !! | ATCTATATAGAATTTCTAAC+TGG | - | chr5_2:60228317-60228336 | None:intergenic | 20.0% |
| !!! | ATTTTTCTAAGATGTTACAA+AGG | + | chr5_2:60228854-60228873 | Msa0779060:intron | 20.0% |
| !!! | ATAGGCTTAATTTTAGAATA+TGG | + | chr5_2:60228952-60228971 | Msa0779060:intron | 20.0% |
| !! | AATTTGGAAAAAAAGTCATT+TGG | - | chr5_2:60229029-60229048 | None:intergenic | 20.0% |
| !!! | TAGTAGGTTTAAAATAAAGA+TGG | + | chr5_2:60229092-60229111 | Msa0779060:intron | 20.0% |
| !! | TAATGTAAAAACTTGAAAGT+GGG | - | chr5_2:60229203-60229222 | None:intergenic | 20.0% |
| !! | ATAATGTAAAAACTTGAAAG+TGG | - | chr5_2:60229204-60229223 | None:intergenic | 20.0% |
| !! | AATAAGCCTAATTTATAACT+AGG | + | chr5_2:60229281-60229300 | Msa0779060:intron | 20.0% |
| !!! | TTTCTTTTATCAAAAGCAAT+TGG | - | chr5_2:60229335-60229354 | None:intergenic | 20.0% |
| !!! | TTTCCTTTATCTTTTTCTTT+TGG | + | chr5_2:60229396-60229415 | Msa0779060:intron | 20.0% |
| !!! | TTTTTGAAGTAATCTAGTAA+TGG | + | chr5_2:60229479-60229498 | Msa0779060:intron | 20.0% |
| !! | AAATGAGTTATAATCAATCA+TGG | + | chr5_2:60229520-60229539 | Msa0779060:intron | 20.0% |
| !!! | GATTTTGTTCCTATAAAAAA+AGG | - | chr5_2:60229804-60229823 | None:intergenic | 20.0% |
| !! | CTATAATTTAGAAGAAACTT+CGG | - | chr5_2:60230653-60230672 | None:intergenic | 20.0% |
| ! | AAGTAACAGTTATAAGAGAA+AGG | - | chr5_2:60227179-60227198 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTCTTTAACTCTC+CGG | - | chr5_2:60227760-60227779 | None:intergenic | 25.0% |
| !! | TGATTATTTTCTATTCTTGG+TGG | + | chr5_2:60227928-60227947 | Msa0779060:intron | 25.0% |
| ! | ATAACTTTCAAGCATAAGTT+TGG | - | chr5_2:60227960-60227979 | None:intergenic | 25.0% |
| ! | TGCTATAAAGATTGCAAATT+TGG | + | chr5_2:60228338-60228357 | Msa0779060:intron | 25.0% |
| ! | GCTATAAAGATTGCAAATTT+GGG | + | chr5_2:60228339-60228358 | Msa0779060:intron | 25.0% |
| ! | CTATAAAGATTGCAAATTTG+GGG | + | chr5_2:60228340-60228359 | Msa0779060:intron | 25.0% |
| !!! | ATTGGATGGTTGTTTTTATT+AGG | + | chr5_2:60228569-60228588 | Msa0779060:intron | 25.0% |
| ! | TGAGTAGAGTACAAAAAATT+TGG | - | chr5_2:60229045-60229064 | None:intergenic | 25.0% |
| !! | GGTTTAAAATAAAGATGGAA+TGG | + | chr5_2:60229097-60229116 | Msa0779060:intron | 25.0% |
| ! | AATGTAAAAACTTGAAAGTG+GGG | - | chr5_2:60229202-60229221 | None:intergenic | 25.0% |
| ! | GATTTCAAATTGAGAATCAT+TGG | - | chr5_2:60229234-60229253 | None:intergenic | 25.0% |
| ! | TAACTGAATGGAAAACATAA+AGG | - | chr5_2:60229261-60229280 | None:intergenic | 25.0% |
| ! | ATTAGGCTTATTTAACTGAA+TGG | - | chr5_2:60229273-60229292 | None:intergenic | 25.0% |
| ! | ACAAAGCCTAGTTATAAATT+AGG | - | chr5_2:60229290-60229309 | None:intergenic | 25.0% |
| !!! | ATTTATAACTAGGCTTTGTT+TGG | + | chr5_2:60229291-60229310 | Msa0779060:intron | 25.0% |
| ! | TCAAAAGCAATTGGTATAAA+AGG | - | chr5_2:60229326-60229345 | None:intergenic | 25.0% |
| ! | GGTTAATAGTTATCTAGTAA+TGG | + | chr5_2:60229443-60229462 | Msa0779060:intron | 25.0% |
| !!! | ATAGTTATCTAGTAATGGAT+AGG | + | chr5_2:60229448-60229467 | Msa0779060:intron | 25.0% |
| ! | GACTTGAGAAAATTAACTAT+TGG | - | chr5_2:60229854-60229873 | None:intergenic | 25.0% |
| ! | AAGTGATAGGTGTAAATATA+AGG | + | chr5_2:60230306-60230325 | Msa0779060:CDS | 25.0% |
| ! | ATTACACCTTCTCTTAAAAT+TGG | - | chr5_2:60230334-60230353 | None:intergenic | 25.0% |
| ! | GATATTATATCTCAGATTGA+TGG | + | chr5_2:60230493-60230512 | Msa0779060:CDS | 25.0% |
| ! | AAAGAAGATGTTAGATGAAA+TGG | + | chr5_2:60230537-60230556 | Msa0779060:CDS | 25.0% |
| TCAAGTAGATTATTTAGAGG+AGG | + | chr5_2:60227587-60227606 | Msa0779060:intron | 30.0% | |
| !!! | AACTCTCCGGTTTTTTATAA+GGG | - | chr5_2:60227747-60227766 | None:intergenic | 30.0% |
| !!! | TAACTCTCCGGTTTTTTATA+AGG | - | chr5_2:60227748-60227767 | None:intergenic | 30.0% |
| ! | TTCTCCTTTTGTTCTATCTA+TGG | + | chr5_2:60228006-60228025 | Msa0779060:intron | 30.0% |
| AAGTCCATAGATAGAACAAA+AGG | - | chr5_2:60228013-60228032 | None:intergenic | 30.0% | |
| ! | GCTAGAAAATCTAGACTTTT+TGG | + | chr5_2:60228074-60228093 | Msa0779060:intron | 30.0% |
| ! | TACACACTGATTGAATGTTA+GGG | - | chr5_2:60228993-60229012 | None:intergenic | 30.0% |
| ! | TTACACACTGATTGAATGTT+AGG | - | chr5_2:60228994-60229013 | None:intergenic | 30.0% |
| TAACATTCAATCAGTGTGTA+AGG | + | chr5_2:60228993-60229012 | Msa0779060:intron | 30.0% | |
| CTTGTGAATTGTGATATAGT+AGG | + | chr5_2:60229076-60229095 | Msa0779060:intron | 30.0% | |
| !! | TTGGTTTGCTAATTGTTACT+TGG | + | chr5_2:60229145-60229164 | Msa0779060:intron | 30.0% |
| GGACCAAAAGAAAAAGATAA+AGG | - | chr5_2:60229402-60229421 | None:intergenic | 30.0% | |
| ACTAGATAACTATTAACCCT+CGG | - | chr5_2:60229441-60229460 | None:intergenic | 30.0% | |
| !! | TCTAGTAATGGATAGATTGT+TGG | + | chr5_2:60229491-60229510 | Msa0779060:intron | 30.0% |
| !! | ATCATTGATTTGAGACTAGA+CGG | + | chr5_2:60229697-60229716 | Msa0779060:intron | 30.0% |
| TAGGAACAAAATCAACATTG+TGG | + | chr5_2:60229811-60229830 | Msa0779060:intron | 30.0% | |
| GTTTGATAAGAAGTGATGAT+TGG | - | chr5_2:60229947-60229966 | None:intergenic | 30.0% | |
| CTTGTTACCATTCTTAGAAA+TGG | + | chr5_2:60229977-60229996 | Msa0779060:CDS | 30.0% | |
| ! | ATCATGGTGTGTTGATAAAT+TGG | - | chr5_2:60230041-60230060 | None:intergenic | 30.0% |
| TTGATTCTAGTATAGTGTTG+AGG | - | chr5_2:60230066-60230085 | None:intergenic | 30.0% | |
| TGCTTTAATAGAGTCTTTAG+TGG | + | chr5_2:60230156-60230175 | Msa0779060:CDS | 30.0% | |
| !! | AAGGAACCAATTTTAAGAGA+AGG | + | chr5_2:60230325-60230344 | Msa0779060:CDS | 30.0% |
| !! | ATTGATGGTGATGAACAATT+TGG | + | chr5_2:60230508-60230527 | Msa0779060:CDS | 30.0% |
| ! | TGAAATGGTTCAAGTTAGTA+TGG | + | chr5_2:60230552-60230571 | Msa0779060:CDS | 30.0% |
| ! | TTTGAGACATTTACAGCAAA+GGG | + | chr5_2:60230582-60230601 | Msa0779060:CDS | 30.0% |
| AATTCCACCAATGGAAACAT+CGG | + | chr5_2:60227230-60227249 | Msa0779060:exon | 35.0% | |
| GTTAGAGGACCAAAATACAT+CGG | + | chr5_2:60227269-60227288 | Msa0779060:CDS | 35.0% | |
| TAATAAGAGCTTAGTCTCGT+TGG | - | chr5_2:60227641-60227660 | None:intergenic | 35.0% | |
| ACAAAATTCGACTAAGAGCT+AGG | - | chr5_2:60227714-60227733 | None:intergenic | 35.0% | |
| CTACGACCCTTATAAAAAAC+CGG | + | chr5_2:60227738-60227757 | Msa0779060:intron | 35.0% | |
| ACAAGGTGTGGCATAAAATA+AGG | - | chr5_2:60228054-60228073 | None:intergenic | 35.0% | |
| !! | AGTCTAGATTTTCTAGCACA+AGG | - | chr5_2:60228071-60228090 | None:intergenic | 35.0% |
| CCTTATATTAGTGTCTCCTT+CGG | + | chr5_2:60228229-60228248 | Msa0779060:intron | 35.0% | |
| TTCATGAATTCCTAAACCGA+AGG | - | chr5_2:60228248-60228267 | None:intergenic | 35.0% | |
| AAGATTGCAAATTTGGGGAA+AGG | + | chr5_2:60228345-60228364 | Msa0779060:intron | 35.0% | |
| AGATTGCAAATTTGGGGAAA+GGG | + | chr5_2:60228346-60228365 | Msa0779060:intron | 35.0% | |
| TTGGATTCCATAATTGTGCA+GGG | - | chr5_2:60228719-60228738 | None:intergenic | 35.0% | |
| TATGGAATCCAACCTAGATA+AGG | + | chr5_2:60228727-60228746 | Msa0779060:intron | 35.0% | |
| ATGGAATCCAACCTAGATAA+GGG | + | chr5_2:60228728-60228747 | Msa0779060:intron | 35.0% | |
| TTTGTCAGTTTCCCTTATCT+AGG | - | chr5_2:60228742-60228761 | None:intergenic | 35.0% | |
| AGAATATGGTTCATGACTTG+AGG | + | chr5_2:60228966-60228985 | Msa0779060:intron | 35.0% | |
| ! | ATCTTTTTCTTTTGGTCCCT+AGG | + | chr5_2:60229404-60229423 | Msa0779060:intron | 35.0% |
| !!! | CTCGGAAATTTTTTCTCCTA+GGG | - | chr5_2:60229423-60229442 | None:intergenic | 35.0% |
| CTAGGAGAAAAAATTTCCGA+GGG | + | chr5_2:60229422-60229441 | Msa0779060:intron | 35.0% | |
| AAAATCAACATTGTGGAAGC+TGG | + | chr5_2:60229818-60229837 | Msa0779060:CDS | 35.0% | |
| !! | AGAAGTGATGATTGGTTTGT+TGG | - | chr5_2:60229939-60229958 | None:intergenic | 35.0% |
| CTAAGAATGGTAACAAGAAG+AGG | - | chr5_2:60229974-60229993 | None:intergenic | 35.0% | |
| ! | TTGGCTTCCATTTCTAAGAA+TGG | - | chr5_2:60229987-60230006 | None:intergenic | 35.0% |
| AGCTAAATCTGATGCTGTAA+TGG | + | chr5_2:60230009-60230028 | Msa0779060:CDS | 35.0% | |
| ! | GTATAGTGTTGAGGTTATCA+TGG | - | chr5_2:60230057-60230076 | None:intergenic | 35.0% |
| !!! | GCATTTTTCAGCTGTTTTTG+AGG | - | chr5_2:60230134-60230153 | None:intergenic | 35.0% |
| ! | TCTTTAGTGGATCATGAGAA+AGG | + | chr5_2:60230169-60230188 | Msa0779060:CDS | 35.0% |
| ATTTCCTTAACATCCGAAGA+AGG | + | chr5_2:60230196-60230215 | Msa0779060:CDS | 35.0% | |
| GTAGTCGAAGTTCTTGAAAA+TGG | + | chr5_2:60230232-60230251 | Msa0779060:CDS | 35.0% | |
| ACAGCATGTTCTTTACTTTG+TGG | - | chr5_2:60230262-60230281 | None:intergenic | 35.0% | |
| CAAAGTAAAGAACATGCTGT+TGG | + | chr5_2:60230262-60230281 | Msa0779060:CDS | 35.0% | |
| TGAGAATGTGTCAAAGTGAT+AGG | + | chr5_2:60230293-60230312 | Msa0779060:CDS | 35.0% | |
| ! | TTAAGAGAAGGTGTAATTCC+AGG | + | chr5_2:60230337-60230356 | Msa0779060:CDS | 35.0% |
| CTTCTTGAACTAACTGTTCA+AGG | + | chr5_2:60230361-60230380 | Msa0779060:CDS | 35.0% | |
| TCAAGGAACAACAAAGTCTA+AGG | + | chr5_2:60230378-60230397 | Msa0779060:CDS | 35.0% | |
| GAAACAAGATGTGAGATTGA+AGG | + | chr5_2:60230445-60230464 | Msa0779060:CDS | 35.0% | |
| ! | GTTTGAGACATTTACAGCAA+AGG | + | chr5_2:60230581-60230600 | Msa0779060:CDS | 35.0% |
| AGTAATAGACACATCACTTG+TGG | - | chr5_2:60230620-60230639 | None:intergenic | 35.0% | |
| GAGAAAGGAGACACATATAG+AGG | - | chr5_2:60227164-60227183 | None:intergenic | 40.0% | |
| TTGTAGAGAGAGAGGTTGTT+TGG | - | chr5_2:60227212-60227231 | None:intergenic | 40.0% | |
| TCTCTCTACAATTCCACCAA+TGG | + | chr5_2:60227221-60227240 | Msa0779060:exon | 40.0% | |
| GAATTCTCCGATGTTTCCAT+TGG | - | chr5_2:60227240-60227259 | None:intergenic | 40.0% | |
| !!! | GTATTTTGGTCCTCTAACGT+TGG | - | chr5_2:60227267-60227286 | None:intergenic | 40.0% |
| CAACCAGGACATGAAAATTC+AGG | + | chr5_2:60227329-60227348 | Msa0779060:CDS | 40.0% | |
| ! | CAAGTGGAGTAATAGCTTGT+CGG | - | chr5_2:60227410-60227429 | None:intergenic | 40.0% |
| ! | ACTTTTCATCTTGAACAGCG+AGG | - | chr5_2:60227494-60227513 | None:intergenic | 40.0% |
| ! | TTTTTCTCCAATTGGGATGC+TGG | + | chr5_2:60227800-60227819 | Msa0779060:intron | 40.0% |
| AATTGTTCCAGCATCCCAAT+TGG | - | chr5_2:60227810-60227829 | None:intergenic | 40.0% | |
| !! | AGATTTTCTAGCACAAGGTG+TGG | - | chr5_2:60228066-60228085 | None:intergenic | 40.0% |
| CCGAAGGAGACACTAATATA+AGG | - | chr5_2:60228232-60228251 | None:intergenic | 40.0% | |
| ATTAGTGTCTCCTTCGGTTT+AGG | + | chr5_2:60228235-60228254 | Msa0779060:intron | 40.0% | |
| GACAGTTGAAGCTCATCAAT+TGG | + | chr5_2:60228551-60228570 | Msa0779060:intron | 40.0% | |
| GTTGAAGCTCATCAATTGGA+TGG | + | chr5_2:60228555-60228574 | Msa0779060:intron | 40.0% | |
| GTATAGTTGCAGCAAAGTCA+TGG | - | chr5_2:60228644-60228663 | None:intergenic | 40.0% | |
| ! | AAATCCTGTTGACTAGAAGC+TGG | + | chr5_2:60228692-60228711 | Msa0779060:intron | 40.0% |
| GTTGGATTCCATAATTGTGC+AGG | - | chr5_2:60228720-60228739 | None:intergenic | 40.0% | |
| TCAGTTTCCCTTATCTAGGT+TGG | - | chr5_2:60228738-60228757 | None:intergenic | 40.0% | |
| !!! | CCTCGGAAATTTTTTCTCCT+AGG | - | chr5_2:60229424-60229443 | None:intergenic | 40.0% |
| CCTAGGAGAAAAAATTTCCG+AGG | + | chr5_2:60229421-60229440 | Msa0779060:intron | 40.0% | |
| CACCCTGTATTAGTTAATCC+CGG | + | chr5_2:60229612-60229631 | Msa0779060:intron | 40.0% | |
| AGCCGGGATTAACTAATACA+GGG | - | chr5_2:60229617-60229636 | None:intergenic | 40.0% | |
| TAGCCGGGATTAACTAATAC+AGG | - | chr5_2:60229618-60229637 | None:intergenic | 40.0% | |
| TCCCGGCTACTAATATAGAT+CGG | + | chr5_2:60229629-60229648 | Msa0779060:intron | 40.0% | |
| ACCGATCTATATTAGTAGCC+GGG | - | chr5_2:60229633-60229652 | None:intergenic | 40.0% | |
| GACCGATCTATATTAGTAGC+CGG | - | chr5_2:60229634-60229653 | None:intergenic | 40.0% | |
| GGCTACTAATATAGATCGGT+CGG | + | chr5_2:60229633-60229652 | Msa0779060:intron | 40.0% | |
| !! | CAGCATCAGATTTAGCTTGT+TGG | - | chr5_2:60230006-60230025 | None:intergenic | 40.0% |
| ACAGTTAGTTCAAGAAGTCC+TGG | - | chr5_2:60230358-60230377 | None:intergenic | 40.0% | |
| ACATATAGAGGAGCGGTTGT+TGG | - | chr5_2:60227152-60227171 | None:intergenic | 45.0% | |
| AGGAGACACATATAGAGGAG+CGG | - | chr5_2:60227159-60227178 | None:intergenic | 45.0% | |
| AGAGAGAGGTTGTTTGGAAG+AGG | - | chr5_2:60227206-60227225 | None:intergenic | 45.0% | |
| TGGTGGAATTGTAGAGAGAG+AGG | - | chr5_2:60227220-60227239 | None:intergenic | 45.0% | |
| TTCTCCGATGTTTCCATTGG+TGG | - | chr5_2:60227237-60227256 | None:intergenic | 45.0% | |
| GAATTCTCCTCCAACGTTAG+AGG | + | chr5_2:60227254-60227273 | Msa0779060:CDS | 45.0% | |
| ! | TTTTGGTCCTCTAACGTTGG+AGG | - | chr5_2:60227264-60227283 | None:intergenic | 45.0% |
| ! | GTACGGACACCGATGTATTT+TGG | - | chr5_2:60227281-60227300 | None:intergenic | 45.0% |
| TAGCTCCAAAGCTCTCTGTA+CGG | - | chr5_2:60227298-60227317 | None:intergenic | 45.0% | |
| !! | AGCTTTGGAGCTACTCTATC+TGG | + | chr5_2:60227305-60227324 | Msa0779060:CDS | 45.0% |
| ! | CAGCCTGAATTTTCATGTCC+TGG | - | chr5_2:60227335-60227354 | None:intergenic | 45.0% |
| CATGAAAATTCAGGCTGCCA+AGG | + | chr5_2:60227338-60227357 | Msa0779060:CDS | 45.0% | |
| TTGAACAGCGAGGTTAAGCA+AGG | - | chr5_2:60227484-60227503 | None:intergenic | 45.0% | |
| TGCAAATTTGGGGAAAGGGT+CGG | + | chr5_2:60228350-60228369 | Msa0779060:intron | 45.0% | |
| TCCTTAACATCCGAAGAAGG+CGG | + | chr5_2:60230199-60230218 | Msa0779060:CDS | 45.0% | |
| ! | GAGCGGTTGTTGGTTGAGAA+AGG | - | chr5_2:60227142-60227161 | None:intergenic | 50.0% |
| GCTACTCTATCTGGACAACC+AGG | + | chr5_2:60227314-60227333 | Msa0779060:CDS | 50.0% | |
| ! | TAATAGCTTGTCGGAGCTGG+CGG | - | chr5_2:60227401-60227420 | None:intergenic | 50.0% |
| ! | GAGTAATAGCTTGTCGGAGC+TGG | - | chr5_2:60227404-60227423 | None:intergenic | 50.0% |
| ACTCGGAGCATGGAAACAAG+TGG | - | chr5_2:60227426-60227445 | None:intergenic | 50.0% | |
| TTAAGCAAGGCCAGAAGAGC+AGG | - | chr5_2:60227471-60227490 | None:intergenic | 50.0% | |
| GCAAATTTGGGGAAAGGGTC+GGG | + | chr5_2:60228351-60228370 | Msa0779060:intron | 50.0% | |
| AGCTGGACCCTGCACAATTA+TGG | + | chr5_2:60228709-60228728 | Msa0779060:intron | 50.0% | |
| ACCGCCTTCTTCGGATGTTA+AGG | - | chr5_2:60230203-60230222 | None:intergenic | 50.0% | |
| GGTGTCCGTACAGAGAGCTT+TGG | + | chr5_2:60227290-60227309 | Msa0779060:CDS | 55.0% | |
| !! | GGTGGGAGGTTTTGGTGAGA+CGG | - | chr5_2:60227371-60227390 | None:intergenic | 55.0% |
| AGAGCAGGTTCATGGGACTC+CGG | - | chr5_2:60227456-60227475 | None:intergenic | 55.0% | |
| GTCCCATGAACCTGCTCTTC+TGG | + | chr5_2:60227458-60227477 | Msa0779060:CDS | 55.0% | |
| GGCCAGAAGAGCAGGTTCAT+GGG | - | chr5_2:60227463-60227482 | None:intergenic | 55.0% | |
| AGGCCAGAAGAGCAGGTTCA+TGG | - | chr5_2:60227464-60227483 | None:intergenic | 55.0% | |
| GGGTCCAGCTTCTAGTCAAC+AGG | - | chr5_2:60228699-60228718 | None:intergenic | 55.0% | |
| CGCAAGAACACCGCCTTCTT+CGG | - | chr5_2:60230212-60230231 | None:intergenic | 55.0% | |
| CGAAGAAGGCGGTGTTCTTG+CGG | + | chr5_2:60230210-60230229 | Msa0779060:CDS | 55.0% | |
| !! | GGGAGGTTTTGGTGAGACGG+CGG | - | chr5_2:60227368-60227387 | None:intergenic | 60.0% |
| CATGCTCCGAGTAGACTCGC+CGG | + | chr5_2:60227434-60227453 | Msa0779060:CDS | 60.0% | |
| GGTGAGACGGCGGATGTCCT+TGG | - | chr5_2:60227358-60227377 | None:intergenic | 65.0% | |
| ! | GCGGCAACGGTGGGAGGTTT+TGG | - | chr5_2:60227379-60227398 | None:intergenic | 65.0% |
| ! | TAGCTTGTCGGAGCTGGCGG+CGG | - | chr5_2:60227398-60227417 | None:intergenic | 65.0% |
| CGGCGAGTCTACTCGGAGCA+TGG | - | chr5_2:60227436-60227455 | None:intergenic | 65.0% | |
| GGGACTCCGGCGAGTCTACT+CGG | - | chr5_2:60227443-60227462 | None:intergenic | 65.0% | |
| GAGCTGGCGGCGGCAACGGT+GGG | - | chr5_2:60227388-60227407 | None:intergenic | 75.0% | |
| GTCGGAGCTGGCGGCGGCAA+CGG | - | chr5_2:60227392-60227411 | None:intergenic | 75.0% | |
| ! | CTGGCGGCGGCAACGGTGGG+AGG | - | chr5_2:60227385-60227404 | None:intergenic | 80.0% |
| ! | GGAGCTGGCGGCGGCAACGG+TGG | - | chr5_2:60227389-60227408 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60227130 | 60230672 | 60227130 | ID=Msa0779060;Name=Msa0779060 |
| chr5_2 | mRNA | 60227130 | 60230672 | 60227130 | ID=Msa0779060-mRNA-1;Parent=Msa0779060;Name=Msa0779060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=110|1|0.5|1|1|1|2|0|376 |
| chr5_2 | exon | 60227130 | 60227511 | 60227130 | ID=Msa0779060-mRNA-1:exon:17609;Parent=Msa0779060-mRNA-1 |
| chr5_2 | exon | 60229814 | 60230672 | 60229814 | ID=Msa0779060-mRNA-1:exon:17610;Parent=Msa0779060-mRNA-1 |
| chr5_2 | five_prime_UTR | 60227130 | 60227239 | 60227130 | ID=Msa0779060-mRNA-1:five_prime_utr;Parent=Msa0779060-mRNA-1 |
| chr5_2 | CDS | 60227240 | 60227511 | 60227240 | ID=Msa0779060-mRNA-1:cds;Parent=Msa0779060-mRNA-1 |
| chr5_2 | CDS | 60229814 | 60230672 | 60229814 | ID=Msa0779060-mRNA-1:cds;Parent=Msa0779060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
