Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779070 | sp|P49173|NIP1_NICAL | 64.885 | 262 | 85 | 2 | 4 | 258 | 3 | 264 | 7.34e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779070 | G7KBN5 | 94.776 | 268 | 12 | 1 | 1 | 266 | 1 | 268 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737320 | Msa0779070 | 0.806642 | 7.449244e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779070 | MtrunA17_Chr5g0435051 | 94.776 | 268 | 12 | 1 | 1 | 266 | 1 | 268 | 0.0 | 513 |
| Msa0779070 | MtrunA17_Chr3g0079421 | 74.180 | 244 | 61 | 1 | 17 | 258 | 5 | 248 | 1.79e-134 | 380 |
| Msa0779070 | MtrunA17_Chr4g0044201 | 55.823 | 249 | 90 | 3 | 11 | 252 | 4 | 239 | 1.85e-97 | 286 |
| Msa0779070 | MtrunA17_Chr8g0379911 | 51.639 | 244 | 109 | 2 | 10 | 252 | 18 | 253 | 7.30e-87 | 259 |
| Msa0779070 | MtrunA17_Chr2g0284591 | 50.000 | 252 | 117 | 3 | 7 | 252 | 3 | 251 | 1.19e-86 | 259 |
| Msa0779070 | MtrunA17_Chr2g0284581 | 51.883 | 239 | 106 | 3 | 20 | 252 | 18 | 253 | 1.68e-84 | 253 |
| Msa0779070 | MtrunA17_Chr8g0379901 | 50.000 | 258 | 119 | 4 | 1 | 252 | 1 | 254 | 2.90e-83 | 250 |
| Msa0779070 | MtrunA17_Chr2g0284611 | 53.043 | 230 | 100 | 3 | 31 | 255 | 31 | 257 | 6.04e-83 | 249 |
| Msa0779070 | MtrunA17_Chr2g0284631 | 46.442 | 267 | 135 | 4 | 3 | 264 | 57 | 320 | 2.70e-82 | 250 |
| Msa0779070 | MtrunA17_Chr2g0284601 | 53.695 | 203 | 87 | 2 | 54 | 252 | 6 | 205 | 1.57e-73 | 224 |
| Msa0779070 | MtrunA17_Chr7g0217331 | 44.395 | 223 | 122 | 2 | 38 | 259 | 37 | 258 | 1.45e-62 | 197 |
| Msa0779070 | MtrunA17_Chr4g0001221 | 45.188 | 239 | 122 | 3 | 27 | 264 | 64 | 294 | 3.88e-60 | 192 |
| Msa0779070 | MtrunA17_Chr5g0426131 | 41.304 | 230 | 126 | 4 | 37 | 261 | 36 | 261 | 1.19e-58 | 187 |
| Msa0779070 | MtrunA17_Chr2g0333771 | 45.000 | 220 | 116 | 3 | 36 | 254 | 78 | 293 | 3.65e-57 | 185 |
| Msa0779070 | MtrunA17_Chr1g0201331 | 42.593 | 216 | 122 | 2 | 33 | 247 | 69 | 283 | 5.26e-52 | 171 |
| Msa0779070 | MtrunA17_Chr1g0184541 | 38.140 | 215 | 131 | 2 | 34 | 247 | 58 | 271 | 2.20e-44 | 151 |
| Msa0779070 | MtrunA17_Chr2g0331261 | 36.820 | 239 | 123 | 8 | 33 | 252 | 15 | 244 | 1.31e-29 | 112 |
| Msa0779070 | MtrunA17_Chr4g0001111 | 44.231 | 156 | 85 | 2 | 27 | 181 | 64 | 218 | 1.19e-28 | 108 |
| Msa0779070 | MtrunA17_Chr1g0146161 | 36.087 | 230 | 138 | 7 | 37 | 259 | 18 | 245 | 1.10e-27 | 107 |
| Msa0779070 | MtrunA17_Chr6g0478191 | 33.898 | 236 | 144 | 4 | 37 | 260 | 20 | 255 | 1.87e-27 | 106 |
| Msa0779070 | MtrunA17_Chr1g0188771 | 34.862 | 218 | 134 | 3 | 37 | 246 | 20 | 237 | 4.54e-27 | 105 |
| Msa0779070 | MtrunA17_Chr8g0340161 | 36.087 | 230 | 129 | 8 | 37 | 252 | 18 | 243 | 5.52e-27 | 105 |
| Msa0779070 | MtrunA17_Chr1g0146171 | 37.391 | 230 | 133 | 8 | 37 | 258 | 18 | 244 | 6.06e-27 | 104 |
| Msa0779070 | MtrunA17_Chr5g0399341 | 36.058 | 208 | 122 | 4 | 37 | 235 | 18 | 223 | 3.32e-24 | 97.8 |
| Msa0779070 | MtrunA17_Chr2g0326621 | 34.043 | 188 | 112 | 3 | 71 | 246 | 84 | 271 | 9.72e-23 | 94.7 |
| Msa0779070 | MtrunA17_Chr4g0001121 | 47.059 | 85 | 38 | 1 | 180 | 264 | 10 | 87 | 1.09e-22 | 89.4 |
| Msa0779070 | MtrunA17_Chr4g0001161 | 43.939 | 132 | 72 | 2 | 51 | 181 | 1 | 131 | 3.86e-22 | 89.4 |
| Msa0779070 | MtrunA17_Chr5g0436701 | 28.571 | 252 | 156 | 6 | 10 | 241 | 28 | 275 | 3.86e-22 | 92.8 |
| Msa0779070 | MtrunA17_Chr7g0264961 | 33.032 | 221 | 133 | 5 | 37 | 246 | 20 | 236 | 9.41e-22 | 91.3 |
| Msa0779070 | MtrunA17_Chr1g0212671 | 33.333 | 219 | 132 | 3 | 37 | 244 | 20 | 235 | 1.09e-21 | 90.9 |
| Msa0779070 | MtrunA17_Chr4g0030861 | 33.645 | 214 | 126 | 6 | 43 | 244 | 26 | 235 | 2.18e-20 | 87.4 |
| Msa0779070 | MtrunA17_Chr7g0264111 | 30.769 | 208 | 122 | 5 | 71 | 262 | 82 | 283 | 2.57e-20 | 87.8 |
| Msa0779070 | MtrunA17_Chr3g0145671 | 30.357 | 224 | 144 | 4 | 35 | 246 | 38 | 261 | 5.34e-20 | 87.0 |
| Msa0779070 | MtrunA17_Chr4g0029071 | 31.771 | 192 | 111 | 5 | 71 | 246 | 82 | 269 | 6.13e-20 | 87.0 |
| Msa0779070 | MtrunA17_Chr5g0397391 | 30.208 | 192 | 121 | 4 | 66 | 244 | 84 | 275 | 2.23e-19 | 85.5 |
| Msa0779070 | MtrunA17_Chr7g0222791 | 31.963 | 219 | 135 | 3 | 37 | 244 | 20 | 235 | 2.52e-19 | 84.7 |
| Msa0779070 | MtrunA17_Chr3g0113211 | 26.953 | 256 | 162 | 6 | 9 | 244 | 28 | 278 | 3.51e-19 | 84.7 |
| Msa0779070 | MtrunA17_Chr1g0199731 | 30.808 | 198 | 117 | 4 | 65 | 246 | 76 | 269 | 8.66e-19 | 84.0 |
| Msa0779070 | MtrunA17_Chr8g0386961 | 28.646 | 192 | 124 | 3 | 66 | 244 | 84 | 275 | 8.84e-18 | 80.9 |
| Msa0779070 | MtrunA17_Chr4g0006001 | 27.273 | 264 | 172 | 8 | 9 | 254 | 28 | 289 | 1.26e-16 | 77.8 |
| Msa0779070 | MtrunA17_Chr4g0001151 | 41.481 | 135 | 56 | 4 | 51 | 181 | 1 | 116 | 4.02e-16 | 76.6 |
| Msa0779070 | MtrunA17_Chr4g0020781 | 32.571 | 175 | 112 | 4 | 85 | 257 | 32 | 202 | 2.24e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779070 | AT5G37820.1 | 59.302 | 258 | 99 | 2 | 1 | 252 | 1 | 258 | 2.64e-110 | 320 |
| Msa0779070 | AT5G37820.2 | 59.302 | 258 | 99 | 2 | 1 | 252 | 37 | 294 | 5.37e-110 | 320 |
| Msa0779070 | AT5G37810.1 | 56.977 | 258 | 105 | 2 | 1 | 252 | 1 | 258 | 3.40e-106 | 309 |
| Msa0779070 | AT4G18910.1 | 53.509 | 228 | 98 | 3 | 33 | 252 | 47 | 274 | 3.54e-83 | 251 |
| Msa0779070 | AT4G19030.1 | 46.743 | 261 | 129 | 5 | 1 | 252 | 18 | 277 | 5.92e-78 | 238 |
| Msa0779070 | AT1G31885.1 | 51.327 | 226 | 102 | 3 | 33 | 250 | 38 | 263 | 4.33e-77 | 237 |
| Msa0779070 | AT1G31885.2 | 52.381 | 210 | 92 | 3 | 50 | 251 | 1 | 210 | 7.01e-71 | 219 |
| Msa0779070 | AT2G34390.1 | 43.697 | 238 | 121 | 4 | 33 | 262 | 43 | 275 | 3.52e-67 | 210 |
| Msa0779070 | AT2G34390.2 | 43.966 | 232 | 117 | 4 | 39 | 262 | 7 | 233 | 3.01e-65 | 204 |
| Msa0779070 | AT4G18910.2 | 51.705 | 176 | 77 | 3 | 33 | 200 | 47 | 222 | 3.21e-57 | 182 |
| Msa0779070 | AT4G19030.3 | 43.541 | 209 | 108 | 5 | 1 | 200 | 18 | 225 | 2.16e-53 | 173 |
| Msa0779070 | AT1G80760.1 | 39.764 | 254 | 145 | 5 | 11 | 262 | 54 | 301 | 2.84e-53 | 175 |
| Msa0779070 | AT4G10380.1 | 42.326 | 215 | 122 | 2 | 34 | 247 | 74 | 287 | 4.62e-50 | 167 |
| Msa0779070 | AT4G19030.2 | 42.708 | 192 | 100 | 5 | 1 | 183 | 18 | 208 | 1.04e-45 | 153 |
| Msa0779070 | AT2G34390.3 | 41.477 | 176 | 94 | 3 | 33 | 200 | 43 | 217 | 5.02e-44 | 149 |
| Msa0779070 | AT3G06100.1 | 33.852 | 257 | 157 | 6 | 3 | 250 | 4 | 256 | 6.37e-40 | 140 |
| Msa0779070 | AT2G34390.4 | 41.772 | 158 | 83 | 3 | 33 | 182 | 43 | 199 | 2.69e-39 | 137 |
| Msa0779070 | AT3G06100.2 | 37.264 | 212 | 127 | 4 | 41 | 250 | 1 | 208 | 6.77e-38 | 133 |
| Msa0779070 | AT3G16240.1 | 34.025 | 241 | 142 | 6 | 33 | 260 | 14 | 250 | 6.86e-28 | 107 |
| Msa0779070 | AT1G17810.1 | 33.613 | 238 | 143 | 5 | 37 | 259 | 23 | 260 | 7.91e-28 | 108 |
| Msa0779070 | AT2G29870.1 | 46.729 | 107 | 53 | 1 | 154 | 260 | 22 | 124 | 4.83e-26 | 99.8 |
| Msa0779070 | AT1G73190.1 | 34.348 | 230 | 124 | 7 | 37 | 246 | 23 | 245 | 4.85e-26 | 103 |
| Msa0779070 | AT2G25810.1 | 34.934 | 229 | 142 | 5 | 37 | 259 | 18 | 245 | 7.99e-26 | 102 |
| Msa0779070 | AT5G47450.1 | 34.375 | 224 | 126 | 7 | 33 | 241 | 14 | 231 | 1.73e-25 | 101 |
| Msa0779070 | AT1G31885.3 | 44.706 | 85 | 46 | 1 | 33 | 116 | 38 | 122 | 2.73e-24 | 95.5 |
| Msa0779070 | AT3G26520.1 | 34.081 | 223 | 129 | 6 | 37 | 246 | 21 | 238 | 1.10e-23 | 96.7 |
| Msa0779070 | AT4G17340.1 | 33.486 | 218 | 136 | 4 | 33 | 241 | 14 | 231 | 1.26e-23 | 96.7 |
| Msa0779070 | AT4G01470.1 | 33.184 | 223 | 127 | 6 | 37 | 244 | 20 | 235 | 2.25e-22 | 93.2 |
| Msa0779070 | AT2G16850.1 | 31.020 | 245 | 149 | 7 | 35 | 262 | 33 | 274 | 2.20e-21 | 91.3 |
| Msa0779070 | AT1G01620.1 | 30.303 | 231 | 148 | 5 | 37 | 254 | 55 | 285 | 8.71e-21 | 89.7 |
| Msa0779070 | AT4G00430.1 | 29.870 | 231 | 149 | 5 | 37 | 254 | 56 | 286 | 2.07e-20 | 88.6 |
| Msa0779070 | AT5G60660.1 | 32.821 | 195 | 117 | 5 | 65 | 246 | 76 | 269 | 3.29e-20 | 88.2 |
| Msa0779070 | AT1G01620.2 | 31.683 | 202 | 125 | 5 | 66 | 254 | 12 | 213 | 3.38e-20 | 86.7 |
| Msa0779070 | AT3G53420.1 | 33.005 | 203 | 121 | 6 | 65 | 253 | 76 | 277 | 3.62e-20 | 87.8 |
| Msa0779070 | AT3G53420.2 | 33.005 | 203 | 121 | 6 | 65 | 253 | 76 | 277 | 3.62e-20 | 87.8 |
| Msa0779070 | AT2G36830.1 | 35.945 | 217 | 124 | 7 | 37 | 241 | 20 | 233 | 5.08e-20 | 87.0 |
| Msa0779070 | AT4G35100.1 | 30.942 | 223 | 142 | 4 | 36 | 246 | 40 | 262 | 6.17e-20 | 87.0 |
| Msa0779070 | AT4G35100.2 | 30.942 | 223 | 142 | 4 | 36 | 246 | 40 | 262 | 6.17e-20 | 87.0 |
| Msa0779070 | AT3G06100.3 | 36.691 | 139 | 83 | 3 | 113 | 250 | 41 | 175 | 7.28e-20 | 85.1 |
| Msa0779070 | AT4G23400.1 | 29.004 | 231 | 151 | 4 | 37 | 254 | 56 | 286 | 9.64e-20 | 86.7 |
| Msa0779070 | AT2G37170.1 | 29.268 | 246 | 143 | 6 | 35 | 253 | 34 | 275 | 2.70e-19 | 85.5 |
| Msa0779070 | AT2G37170.2 | 29.268 | 246 | 143 | 6 | 35 | 253 | 77 | 318 | 4.66e-19 | 85.5 |
| Msa0779070 | AT2G37180.1 | 29.339 | 242 | 148 | 5 | 35 | 253 | 34 | 275 | 7.18e-19 | 84.3 |
| Msa0779070 | AT2G39010.1 | 27.106 | 273 | 164 | 6 | 3 | 246 | 2 | 268 | 8.82e-19 | 84.3 |
| Msa0779070 | AT3G61430.2 | 29.954 | 217 | 140 | 4 | 37 | 241 | 55 | 271 | 9.84e-19 | 84.0 |
| Msa0779070 | AT3G61430.1 | 29.954 | 217 | 140 | 4 | 37 | 241 | 55 | 271 | 9.84e-19 | 84.0 |
| Msa0779070 | AT3G54820.1 | 29.688 | 192 | 115 | 4 | 71 | 246 | 81 | 268 | 4.71e-18 | 82.0 |
| Msa0779070 | AT2G45960.1 | 29.032 | 217 | 142 | 4 | 37 | 241 | 55 | 271 | 1.06e-17 | 81.3 |
| Msa0779070 | AT3G47440.1 | 29.825 | 228 | 135 | 7 | 33 | 244 | 18 | 236 | 2.81e-17 | 79.3 |
| Msa0779070 | AT2G45960.2 | 30.052 | 193 | 122 | 4 | 41 | 220 | 55 | 247 | 4.30e-14 | 70.9 |
| Msa0779070 | AT2G45960.3 | 29.319 | 191 | 126 | 3 | 37 | 218 | 55 | 245 | 4.46e-14 | 71.2 |
Find 64 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACATCCAAAACTTATTT+TGG | 0.107517 | 5_2:+60234211 | Msa0779070:CDS |
| TAACTCTGAAGGTGACTTTA+TGG | 0.246382 | 5_2:-60234923 | None:intergenic |
| AACGGTTCCAAAATAAGTTT+TGG | 0.262047 | 5_2:-60234218 | None:intergenic |
| TATGGCTCTGTAACATTTCC+AGG | 0.301582 | 5_2:+60233832 | Msa0779070:CDS |
| ATGTTAAATGTCTTCATTGC+TGG | 0.326232 | 5_2:+60234659 | Msa0779070:CDS |
| TTAGCGGTGGATAAGATATA+TGG | 0.361073 | 5_2:+60233814 | Msa0779070:CDS |
| GCAGGACCAATACTTCTTGC+TGG | 0.382052 | 5_2:-60234805 | None:intergenic |
| TACTCTGTTGGTCATATCTC+TGG | 0.384052 | 5_2:+60233895 | Msa0779070:CDS |
| TTCATAGATCCTCCTGATAC+AGG | 0.407264 | 5_2:-60234781 | None:intergenic |
| AGTTAGCAGATGAACAATTC+AGG | 0.409928 | 5_2:+60234941 | Msa0779070:CDS |
| ACCGTTCCCGTTGGATCAAA+TGG | 0.412321 | 5_2:+60234235 | Msa0779070:CDS |
| TACGTGGTTGGTCCAATTGT+TGG | 0.427617 | 5_2:+60234862 | Msa0779070:CDS |
| CAATTCAGGAACATTGTTGT+AGG | 0.443646 | 5_2:+60234955 | Msa0779070:CDS |
| CCAGCTATAGCTCCAACAAT+TGG | 0.450905 | 5_2:-60234874 | None:intergenic |
| GACTGGCCATTTGATCCAAC+GGG | 0.452555 | 5_2:-60234241 | None:intergenic |
| CCAATTGTTGGAGCTATAGC+TGG | 0.461522 | 5_2:+60234874 | Msa0779070:CDS |
| TTCCAGGGGTATGTATCACT+TGG | 0.466569 | 5_2:+60233848 | Msa0779070:CDS |
| TGTTAAATGTCTTCATTGCT+GGG | 0.467097 | 5_2:+60234660 | Msa0779070:CDS |
| CTAACTTACCTTCTGTATCA+AGG | 0.467222 | 5_2:-60232929 | None:intergenic |
| TTTGTGGTGTTTGCTGGATG+TGG | 0.469996 | 5_2:+60233787 | Msa0779070:CDS |
| GATTTCGCCGGTGTTGCCAT+TGG | 0.478845 | 5_2:+60234626 | Msa0779070:CDS |
| GACATTTCAAGTGTTGAAGA+AGG | 0.479651 | 5_2:+60232859 | Msa0779070:CDS |
| ACCCTGCTGTTACCATCACT+TGG | 0.498343 | 5_2:+60233929 | Msa0779070:CDS |
| CACTTGGGGACTTATTGTAA+TGG | 0.509714 | 5_2:+60233864 | Msa0779070:CDS |
| ATGAACCCAGCAAGAAGTAT+TGG | 0.512100 | 5_2:+60234799 | Msa0779070:CDS |
| GTCCAAGTGATGGTAACAGC+AGG | 0.513012 | 5_2:-60233931 | None:intergenic |
| TCCAGGGGTATGTATCACTT+GGG | 0.515004 | 5_2:+60233849 | Msa0779070:CDS |
| AAAATAAGTACCTCTCTAAG+TGG | 0.515005 | 5_2:-60233970 | None:intergenic |
| CAGGACCAATACTTCTTGCT+GGG | 0.515882 | 5_2:-60234804 | None:intergenic |
| AAGTGGGGTCCTACGAAAGA+TGG | 0.519066 | 5_2:-60233953 | None:intergenic |
| TAGGTGATTGCAGAAATCAT+TGG | 0.529080 | 5_2:+60233757 | Msa0779070:intron |
| AAATAAGTACCTCTCTAAGT+GGG | 0.534502 | 5_2:-60233969 | None:intergenic |
| TGCTGGATGTGGTTCTTTAG+CGG | 0.537098 | 5_2:+60233798 | Msa0779070:CDS |
| ATGGTCATGTGTTACTCTGT+TGG | 0.538710 | 5_2:+60233883 | Msa0779070:CDS |
| GCCATTTGATCCAACGGGAA+CGG | 0.550503 | 5_2:-60234236 | None:intergenic |
| TGTTCATCTGCTAACTCTGA+AGG | 0.556911 | 5_2:-60234934 | None:intergenic |
| TAACATTATAGTCATTCCAA+TGG | 0.559333 | 5_2:-60234642 | None:intergenic |
| AGTGCATACCGCTCTTTCGT+CGG | 0.561235 | 5_2:-60234323 | None:intergenic |
| AGTCATTCCAATGGCAACAC+CGG | 0.575335 | 5_2:-60234633 | None:intergenic |
| TAAACATGTACTATAAGTGC+AGG | 0.575709 | 5_2:-60234823 | None:intergenic |
| CCCCAAGTGATACATACCCC+TGG | 0.577306 | 5_2:-60233850 | None:intergenic |
| TGATTTCAGCAACTAAAGAC+TGG | 0.582710 | 5_2:-60234258 | None:intergenic |
| AGACTGGCCATTTGATCCAA+CGG | 0.587258 | 5_2:-60234242 | None:intergenic |
| ACGAAAGATGGTCCAAGTGA+TGG | 0.593945 | 5_2:-60233941 | None:intergenic |
| ATGGCTCTGTAACATTTCCA+GGG | 0.593975 | 5_2:+60233833 | Msa0779070:CDS |
| TCTTTCGTCGGTTGAAACTG+CGG | 0.602898 | 5_2:-60234311 | None:intergenic |
| AACAAAGTTGCATGACGTGA+GGG | 0.603296 | 5_2:-60232885 | None:intergenic |
| TACGATAACCTTGATACAGA+AGG | 0.613840 | 5_2:+60232921 | Msa0779070:CDS |
| TCGTAGGACCCCACTTAGAG+AGG | 0.615833 | 5_2:+60233960 | Msa0779070:CDS |
| CAACAAAGTTGCATGACGTG+AGG | 0.616602 | 5_2:-60232886 | None:intergenic |
| CAAAGGACTGTGGATATACG+TGG | 0.621143 | 5_2:+60234846 | Msa0779070:CDS |
| TCACTTGGACCATCTTTCGT+AGG | 0.622666 | 5_2:+60233944 | Msa0779070:CDS |
| CCAGGGGTATGTATCACTTG+GGG | 0.626272 | 5_2:+60233850 | Msa0779070:CDS |
| TCTGTTGGTCATATCTCTGG+AGG | 0.632181 | 5_2:+60233898 | Msa0779070:CDS |
| CTTATAGTACATGTTTACAA+AGG | 0.635477 | 5_2:+60234829 | Msa0779070:CDS |
| TGGCAGGTGAATGATTTCGC+CGG | 0.641490 | 5_2:+60234614 | Msa0779070:intron |
| GGACTGTGGATATACGTGGT+TGG | 0.657716 | 5_2:+60234850 | Msa0779070:CDS |
| GTAGGATCAACGCTTGCAAG+CGG | 0.660440 | 5_2:+60234166 | Msa0779070:CDS |
| AATAAGTACCTCTCTAAGTG+GGG | 0.661090 | 5_2:-60233968 | None:intergenic |
| TCCAAGTGATGGTAACAGCA+GGG | 0.661110 | 5_2:-60233930 | None:intergenic |
| AGTTTCAACCGACGAAAGAG+CGG | 0.663233 | 5_2:+60234315 | Msa0779070:CDS |
| TGGCTCTGTAACATTTCCAG+GGG | 0.685443 | 5_2:+60233834 | Msa0779070:CDS |
| TACATGTTTACAAAGGACTG+TGG | 0.686839 | 5_2:+60234836 | Msa0779070:CDS |
| TGGATGTGGTTCTTTAGCGG+TGG | 0.690413 | 5_2:+60233801 | Msa0779070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTGATGTTAATTTAT+GGG | - | chr5_2:60232977-60232996 | None:intergenic | 10.0% |
| !! | AATTAATTGATGTTAATTTA+TGG | - | chr5_2:60232978-60232997 | None:intergenic | 10.0% |
| !! | ATTAATTGATGTTAATTTAT+GGG | - | chr5_2:60232977-60232996 | None:intergenic | 10.0% |
| !! | AATTAATTGATGTTAATTTA+TGG | - | chr5_2:60232978-60232997 | None:intergenic | 10.0% |
| !!! | TAACTTTTAAAAAATCACAA+TGG | + | chr5_2:60233489-60233508 | Msa0779070:intron | 15.0% |
| !!! | ATTTTTTGCATTTCAAATAT+TGG | + | chr5_2:60234717-60234736 | Msa0779070:intron | 15.0% |
| !!! | TAACTTTTAAAAAATCACAA+TGG | + | chr5_2:60233489-60233508 | Msa0779070:intron | 15.0% |
| !!! | ATTTTTTGCATTTCAAATAT+TGG | + | chr5_2:60234717-60234736 | Msa0779070:intron | 15.0% |
| !! | ACAATGAAAAATTACTAATG+TGG | + | chr5_2:60233000-60233019 | Msa0779070:intron | 20.0% |
| !!! | TTAAATGTATGTTTTATGGA+TGG | + | chr5_2:60233082-60233101 | Msa0779070:intron | 20.0% |
| !!! | TTAGTTTTTTTTTCCTTTCT+CGG | + | chr5_2:60233179-60233198 | Msa0779070:intron | 20.0% |
| !! | CTAAAATAAACACCATATTT+CGG | - | chr5_2:60233218-60233237 | None:intergenic | 20.0% |
| !!! | GAAATATGGTGTTTATTTTA+GGG | + | chr5_2:60233217-60233236 | Msa0779070:intron | 20.0% |
| !!! | GTCATAAAAGATTCTAAAAA+TGG | - | chr5_2:60233331-60233350 | None:intergenic | 20.0% |
| !! | TCTTGATTTAGAAAAGAAAA+AGG | + | chr5_2:60233351-60233370 | Msa0779070:intron | 20.0% |
| !! | TTGGTAAAAAAAACATAAGA+GGG | - | chr5_2:60233380-60233399 | None:intergenic | 20.0% |
| !! | TTTGGTAAAAAAAACATAAG+AGG | - | chr5_2:60233381-60233400 | None:intergenic | 20.0% |
| !! | TTATACCAAATATAGACTTA+AGG | - | chr5_2:60233412-60233431 | None:intergenic | 20.0% |
| !! | TTAAAATGAATGATATGAAG+TGG | - | chr5_2:60234436-60234455 | None:intergenic | 20.0% |
| !! | ACAATGAAAAATTACTAATG+TGG | + | chr5_2:60233000-60233019 | Msa0779070:intron | 20.0% |
| !!! | TTAAATGTATGTTTTATGGA+TGG | + | chr5_2:60233082-60233101 | Msa0779070:intron | 20.0% |
| !!! | TTAGTTTTTTTTTCCTTTCT+CGG | + | chr5_2:60233179-60233198 | Msa0779070:intron | 20.0% |
| !! | CTAAAATAAACACCATATTT+CGG | - | chr5_2:60233218-60233237 | None:intergenic | 20.0% |
| !!! | GAAATATGGTGTTTATTTTA+GGG | + | chr5_2:60233217-60233236 | Msa0779070:intron | 20.0% |
| !!! | GTCATAAAAGATTCTAAAAA+TGG | - | chr5_2:60233331-60233350 | None:intergenic | 20.0% |
| !! | TCTTGATTTAGAAAAGAAAA+AGG | + | chr5_2:60233351-60233370 | Msa0779070:intron | 20.0% |
| !! | TTGGTAAAAAAAACATAAGA+GGG | - | chr5_2:60233380-60233399 | None:intergenic | 20.0% |
| !! | TTTGGTAAAAAAAACATAAG+AGG | - | chr5_2:60233381-60233400 | None:intergenic | 20.0% |
| !! | TTATACCAAATATAGACTTA+AGG | - | chr5_2:60233412-60233431 | None:intergenic | 20.0% |
| !! | TTAAAATGAATGATATGAAG+TGG | - | chr5_2:60234436-60234455 | None:intergenic | 20.0% |
| !!! | CGCTTTAAATGTATGTTTTA+TGG | + | chr5_2:60233078-60233097 | Msa0779070:intron | 25.0% |
| !!! | CGAAATATGGTGTTTATTTT+AGG | + | chr5_2:60233216-60233235 | Msa0779070:intron | 25.0% |
| ! | ATCAAAAGAACATCGTTATT+TGG | - | chr5_2:60233274-60233293 | None:intergenic | 25.0% |
| !!! | TTTTGATGAAGGGTTTTAAA+TGG | + | chr5_2:60233287-60233306 | Msa0779070:intron | 25.0% |
| ! | TGGTAAAAAAAACATAAGAG+GGG | - | chr5_2:60233379-60233398 | None:intergenic | 25.0% |
| ! | TGTTGTGTATGTTAGAATTA+TGG | + | chr5_2:60233432-60233451 | Msa0779070:intron | 25.0% |
| ! | ATGTGTATTGTTACTCTTAA+GGG | - | chr5_2:60233655-60233674 | None:intergenic | 25.0% |
| !! | AATCATTGGAACATATTTTG+TGG | + | chr5_2:60233771-60233790 | Msa0779070:CDS | 25.0% |
| !! | ATCACATCCAAAACTTATTT+TGG | + | chr5_2:60234211-60234230 | Msa0779070:CDS | 25.0% |
| ! | TCGTAAATATCTACACATTA+AGG | + | chr5_2:60234345-60234364 | Msa0779070:intron | 25.0% |
| ! | TTTGTTAACATGATTCTGAT+AGG | + | chr5_2:60234575-60234594 | Msa0779070:intron | 25.0% |
| ! | TAACATTATAGTCATTCCAA+TGG | - | chr5_2:60234645-60234664 | None:intergenic | 25.0% |
| ! | ATTGCTGGGTAATTAATTAT+TGG | + | chr5_2:60234674-60234693 | Msa0779070:intron | 25.0% |
| ! | CTTATAGTACATGTTTACAA+AGG | + | chr5_2:60234829-60234848 | Msa0779070:CDS | 25.0% |
| !!! | CGCTTTAAATGTATGTTTTA+TGG | + | chr5_2:60233078-60233097 | Msa0779070:intron | 25.0% |
| !!! | CGAAATATGGTGTTTATTTT+AGG | + | chr5_2:60233216-60233235 | Msa0779070:intron | 25.0% |
| ! | ATCAAAAGAACATCGTTATT+TGG | - | chr5_2:60233274-60233293 | None:intergenic | 25.0% |
| !!! | TTTTGATGAAGGGTTTTAAA+TGG | + | chr5_2:60233287-60233306 | Msa0779070:intron | 25.0% |
| ! | TGGTAAAAAAAACATAAGAG+GGG | - | chr5_2:60233379-60233398 | None:intergenic | 25.0% |
| ! | TGTTGTGTATGTTAGAATTA+TGG | + | chr5_2:60233432-60233451 | Msa0779070:intron | 25.0% |
| ! | ATGTGTATTGTTACTCTTAA+GGG | - | chr5_2:60233655-60233674 | None:intergenic | 25.0% |
| !! | AATCATTGGAACATATTTTG+TGG | + | chr5_2:60233771-60233790 | Msa0779070:CDS | 25.0% |
| !! | ATCACATCCAAAACTTATTT+TGG | + | chr5_2:60234211-60234230 | Msa0779070:CDS | 25.0% |
| ! | TCGTAAATATCTACACATTA+AGG | + | chr5_2:60234345-60234364 | Msa0779070:intron | 25.0% |
| ! | TTTGTTAACATGATTCTGAT+AGG | + | chr5_2:60234575-60234594 | Msa0779070:intron | 25.0% |
| ! | TAACATTATAGTCATTCCAA+TGG | - | chr5_2:60234645-60234664 | None:intergenic | 25.0% |
| ! | ATTGCTGGGTAATTAATTAT+TGG | + | chr5_2:60234674-60234693 | Msa0779070:intron | 25.0% |
| ! | CTTATAGTACATGTTTACAA+AGG | + | chr5_2:60234829-60234848 | Msa0779070:CDS | 25.0% |
| GTAAGTTAGTGTGACTTAAT+TGG | + | chr5_2:60232943-60232962 | Msa0779070:intron | 30.0% | |
| TCTTAGACTTCGAAATTTGA+CGG | + | chr5_2:60233111-60233130 | Msa0779070:intron | 30.0% | |
| !!! | TGGTGTTTATTTTAGGGTTT+TGG | + | chr5_2:60233223-60233242 | Msa0779070:intron | 30.0% |
| !!! | GGTGTTTATTTTAGGGTTTT+GGG | + | chr5_2:60233224-60233243 | Msa0779070:intron | 30.0% |
| ! | TAACGATGTTCTTTTGATGA+AGG | + | chr5_2:60233276-60233295 | Msa0779070:intron | 30.0% |
| ! | AACGATGTTCTTTTGATGAA+GGG | + | chr5_2:60233277-60233296 | Msa0779070:intron | 30.0% |
| !!! | GAAGGGTTTTAAATGGTTTT+TGG | + | chr5_2:60233294-60233313 | Msa0779070:intron | 30.0% |
| TCTCTCCTTAAGTCTATATT+TGG | + | chr5_2:60233404-60233423 | Msa0779070:intron | 30.0% | |
| CTCATTCAAACATATCCAAA+TGG | + | chr5_2:60233557-60233576 | Msa0779070:intron | 30.0% | |
| GAACTTTCATTTGTTCCATT+TGG | - | chr5_2:60233575-60233594 | None:intergenic | 30.0% | |
| TAATCTTGTGGAAAATGACA+TGG | - | chr5_2:60233630-60233649 | None:intergenic | 30.0% | |
| CATGTGTATTGTTACTCTTA+AGG | - | chr5_2:60233656-60233675 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGATTGTCACT+AGG | + | chr5_2:60233738-60233757 | Msa0779070:intron | 30.0% |
| AAATAAGTACCTCTCTAAGT+GGG | - | chr5_2:60233972-60233991 | None:intergenic | 30.0% | |
| AAAATAAGTACCTCTCTAAG+TGG | - | chr5_2:60233973-60233992 | None:intergenic | 30.0% | |
| AATACGTTTCTTGTACATGT+AGG | + | chr5_2:60234117-60234136 | Msa0779070:intron | 30.0% | |
| ! | ACTATACATTTTTGCTCAGT+TGG | + | chr5_2:60234144-60234163 | Msa0779070:CDS | 30.0% |
| ! | AACGGTTCCAAAATAAGTTT+TGG | - | chr5_2:60234221-60234240 | None:intergenic | 30.0% |
| ! | ATTAAGGAGTATATGCTTGT+CGG | + | chr5_2:60234361-60234380 | Msa0779070:intron | 30.0% |
| ! | TAGGCATTTGCTTAATTTGA+TGG | + | chr5_2:60234594-60234613 | Msa0779070:intron | 30.0% |
| ATGTTAAATGTCTTCATTGC+TGG | + | chr5_2:60234659-60234678 | Msa0779070:CDS | 30.0% | |
| TGTTAAATGTCTTCATTGCT+GGG | + | chr5_2:60234660-60234679 | Msa0779070:CDS | 30.0% | |
| TAAACATGTACTATAAGTGC+AGG | - | chr5_2:60234826-60234845 | None:intergenic | 30.0% | |
| GTAAGTTAGTGTGACTTAAT+TGG | + | chr5_2:60232943-60232962 | Msa0779070:intron | 30.0% | |
| TCTTAGACTTCGAAATTTGA+CGG | + | chr5_2:60233111-60233130 | Msa0779070:intron | 30.0% | |
| !!! | TGGTGTTTATTTTAGGGTTT+TGG | + | chr5_2:60233223-60233242 | Msa0779070:intron | 30.0% |
| !!! | GGTGTTTATTTTAGGGTTTT+GGG | + | chr5_2:60233224-60233243 | Msa0779070:intron | 30.0% |
| ! | TAACGATGTTCTTTTGATGA+AGG | + | chr5_2:60233276-60233295 | Msa0779070:intron | 30.0% |
| ! | AACGATGTTCTTTTGATGAA+GGG | + | chr5_2:60233277-60233296 | Msa0779070:intron | 30.0% |
| !!! | GAAGGGTTTTAAATGGTTTT+TGG | + | chr5_2:60233294-60233313 | Msa0779070:intron | 30.0% |
| TCTCTCCTTAAGTCTATATT+TGG | + | chr5_2:60233404-60233423 | Msa0779070:intron | 30.0% | |
| CTCATTCAAACATATCCAAA+TGG | + | chr5_2:60233557-60233576 | Msa0779070:intron | 30.0% | |
| GAACTTTCATTTGTTCCATT+TGG | - | chr5_2:60233575-60233594 | None:intergenic | 30.0% | |
| TAATCTTGTGGAAAATGACA+TGG | - | chr5_2:60233630-60233649 | None:intergenic | 30.0% | |
| CATGTGTATTGTTACTCTTA+AGG | - | chr5_2:60233656-60233675 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGATTGTCACT+AGG | + | chr5_2:60233738-60233757 | Msa0779070:intron | 30.0% |
| AAATAAGTACCTCTCTAAGT+GGG | - | chr5_2:60233972-60233991 | None:intergenic | 30.0% | |
| AAAATAAGTACCTCTCTAAG+TGG | - | chr5_2:60233973-60233992 | None:intergenic | 30.0% | |
| AATACGTTTCTTGTACATGT+AGG | + | chr5_2:60234117-60234136 | Msa0779070:intron | 30.0% | |
| ! | ACTATACATTTTTGCTCAGT+TGG | + | chr5_2:60234144-60234163 | Msa0779070:CDS | 30.0% |
| ! | AACGGTTCCAAAATAAGTTT+TGG | - | chr5_2:60234221-60234240 | None:intergenic | 30.0% |
| ! | ATTAAGGAGTATATGCTTGT+CGG | + | chr5_2:60234361-60234380 | Msa0779070:intron | 30.0% |
| ! | TAGGCATTTGCTTAATTTGA+TGG | + | chr5_2:60234594-60234613 | Msa0779070:intron | 30.0% |
| ATGTTAAATGTCTTCATTGC+TGG | + | chr5_2:60234659-60234678 | Msa0779070:CDS | 30.0% | |
| TGTTAAATGTCTTCATTGCT+GGG | + | chr5_2:60234660-60234679 | Msa0779070:CDS | 30.0% | |
| TAAACATGTACTATAAGTGC+AGG | - | chr5_2:60234826-60234845 | None:intergenic | 30.0% | |
| !! | GACATTTCAAGTGTTGAAGA+AGG | + | chr5_2:60232859-60232878 | Msa0779070:CDS | 35.0% |
| TACGATAACCTTGATACAGA+AGG | + | chr5_2:60232921-60232940 | Msa0779070:CDS | 35.0% | |
| CTAACTTACCTTCTGTATCA+AGG | - | chr5_2:60232932-60232951 | None:intergenic | 35.0% | |
| TAATTCTCTTCGTAAGCGAT+CGG | - | chr5_2:60233049-60233068 | None:intergenic | 35.0% | |
| ATTCGACTAACACCGAAATA+TGG | + | chr5_2:60233203-60233222 | Msa0779070:intron | 35.0% | |
| AGACTTAAGGAGAGAGAATT+TGG | - | chr5_2:60233399-60233418 | None:intergenic | 35.0% | |
| CTATGTATCCAACATGTTGT+AGG | - | chr5_2:60233601-60233620 | None:intergenic | 35.0% | |
| CTCTTAAGGGTTTAATCTTG+TGG | - | chr5_2:60233642-60233661 | None:intergenic | 35.0% | |
| TAGGTGATTGCAGAAATCAT+TGG | + | chr5_2:60233757-60233776 | Msa0779070:intron | 35.0% | |
| ! | ACATATTTTGTGGTGTTTGC+TGG | + | chr5_2:60233781-60233800 | Msa0779070:CDS | 35.0% |
| TTAGCGGTGGATAAGATATA+TGG | + | chr5_2:60233814-60233833 | Msa0779070:CDS | 35.0% | |
| AATAAGTACCTCTCTAAGTG+GGG | - | chr5_2:60233971-60233990 | None:intergenic | 35.0% | |
| ! | TACATTTTTGCTCAGTTGGT+AGG | + | chr5_2:60234148-60234167 | Msa0779070:CDS | 35.0% |
| TGATTTCAGCAACTAAAGAC+TGG | - | chr5_2:60234261-60234280 | None:intergenic | 35.0% | |
| TTAAGTACAAGAGAATGCTC+TGG | + | chr5_2:60234459-60234478 | Msa0779070:intron | 35.0% | |
| ! | CATTTGCTTAATTTGATGGC+AGG | + | chr5_2:60234598-60234617 | Msa0779070:intron | 35.0% |
| !!! | ATTTTTTGCAGACCTGTATC+AGG | + | chr5_2:60234769-60234788 | Msa0779070:intron | 35.0% |
| TACATGTTTACAAAGGACTG+TGG | + | chr5_2:60234836-60234855 | Msa0779070:CDS | 35.0% | |
| ! | TAACTCTGAAGGTGACTTTA+TGG | - | chr5_2:60234926-60234945 | None:intergenic | 35.0% |
| AGTTAGCAGATGAACAATTC+AGG | + | chr5_2:60234941-60234960 | Msa0779070:CDS | 35.0% | |
| CAATTCAGGAACATTGTTGT+AGG | + | chr5_2:60234955-60234974 | Msa0779070:CDS | 35.0% | |
| !! | GACATTTCAAGTGTTGAAGA+AGG | + | chr5_2:60232859-60232878 | Msa0779070:CDS | 35.0% |
| TACGATAACCTTGATACAGA+AGG | + | chr5_2:60232921-60232940 | Msa0779070:CDS | 35.0% | |
| CTAACTTACCTTCTGTATCA+AGG | - | chr5_2:60232932-60232951 | None:intergenic | 35.0% | |
| TAATTCTCTTCGTAAGCGAT+CGG | - | chr5_2:60233049-60233068 | None:intergenic | 35.0% | |
| ATTCGACTAACACCGAAATA+TGG | + | chr5_2:60233203-60233222 | Msa0779070:intron | 35.0% | |
| AGACTTAAGGAGAGAGAATT+TGG | - | chr5_2:60233399-60233418 | None:intergenic | 35.0% | |
| CTATGTATCCAACATGTTGT+AGG | - | chr5_2:60233601-60233620 | None:intergenic | 35.0% | |
| CTCTTAAGGGTTTAATCTTG+TGG | - | chr5_2:60233642-60233661 | None:intergenic | 35.0% | |
| TAGGTGATTGCAGAAATCAT+TGG | + | chr5_2:60233757-60233776 | Msa0779070:intron | 35.0% | |
| ! | ACATATTTTGTGGTGTTTGC+TGG | + | chr5_2:60233781-60233800 | Msa0779070:CDS | 35.0% |
| TTAGCGGTGGATAAGATATA+TGG | + | chr5_2:60233814-60233833 | Msa0779070:CDS | 35.0% | |
| AATAAGTACCTCTCTAAGTG+GGG | - | chr5_2:60233971-60233990 | None:intergenic | 35.0% | |
| ! | TACATTTTTGCTCAGTTGGT+AGG | + | chr5_2:60234148-60234167 | Msa0779070:CDS | 35.0% |
| TGATTTCAGCAACTAAAGAC+TGG | - | chr5_2:60234261-60234280 | None:intergenic | 35.0% | |
| TTAAGTACAAGAGAATGCTC+TGG | + | chr5_2:60234459-60234478 | Msa0779070:intron | 35.0% | |
| ! | CATTTGCTTAATTTGATGGC+AGG | + | chr5_2:60234598-60234617 | Msa0779070:intron | 35.0% |
| !!! | ATTTTTTGCAGACCTGTATC+AGG | + | chr5_2:60234769-60234788 | Msa0779070:intron | 35.0% |
| TACATGTTTACAAAGGACTG+TGG | + | chr5_2:60234836-60234855 | Msa0779070:CDS | 35.0% | |
| ! | TAACTCTGAAGGTGACTTTA+TGG | - | chr5_2:60234926-60234945 | None:intergenic | 35.0% |
| AGTTAGCAGATGAACAATTC+AGG | + | chr5_2:60234941-60234960 | Msa0779070:CDS | 35.0% | |
| CAATTCAGGAACATTGTTGT+AGG | + | chr5_2:60234955-60234974 | Msa0779070:CDS | 35.0% | |
| AACAAAGTTGCATGACGTGA+GGG | - | chr5_2:60232888-60232907 | None:intergenic | 40.0% | |
| TGTTAGTCGAATTCCGAGAA+AGG | - | chr5_2:60233195-60233214 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGGGTATATGATGT+TGG | + | chr5_2:60233237-60233256 | Msa0779070:intron | 40.0% |
| ! | TATGGCTCTGTAACATTTCC+AGG | + | chr5_2:60233832-60233851 | Msa0779070:CDS | 40.0% |
| ! | ATGGCTCTGTAACATTTCCA+GGG | + | chr5_2:60233833-60233852 | Msa0779070:CDS | 40.0% |
| CACTTGGGGACTTATTGTAA+TGG | + | chr5_2:60233864-60233883 | Msa0779070:CDS | 40.0% | |
| ! | ATGGTCATGTGTTACTCTGT+TGG | + | chr5_2:60233883-60233902 | Msa0779070:CDS | 40.0% |
| TACTCTGTTGGTCATATCTC+TGG | + | chr5_2:60233895-60233914 | Msa0779070:CDS | 40.0% | |
| TTCATAGATCCTCCTGATAC+AGG | - | chr5_2:60234784-60234803 | None:intergenic | 40.0% | |
| ! | ATGAACCCAGCAAGAAGTAT+TGG | + | chr5_2:60234799-60234818 | Msa0779070:CDS | 40.0% |
| TGTTCATCTGCTAACTCTGA+AGG | - | chr5_2:60234937-60234956 | None:intergenic | 40.0% | |
| AACAAAGTTGCATGACGTGA+GGG | - | chr5_2:60232888-60232907 | None:intergenic | 40.0% | |
| TGTTAGTCGAATTCCGAGAA+AGG | - | chr5_2:60233195-60233214 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGGGTATATGATGT+TGG | + | chr5_2:60233237-60233256 | Msa0779070:intron | 40.0% |
| ! | TATGGCTCTGTAACATTTCC+AGG | + | chr5_2:60233832-60233851 | Msa0779070:CDS | 40.0% |
| ! | ATGGCTCTGTAACATTTCCA+GGG | + | chr5_2:60233833-60233852 | Msa0779070:CDS | 40.0% |
| CACTTGGGGACTTATTGTAA+TGG | + | chr5_2:60233864-60233883 | Msa0779070:CDS | 40.0% | |
| ! | ATGGTCATGTGTTACTCTGT+TGG | + | chr5_2:60233883-60233902 | Msa0779070:CDS | 40.0% |
| TACTCTGTTGGTCATATCTC+TGG | + | chr5_2:60233895-60233914 | Msa0779070:CDS | 40.0% | |
| TTCATAGATCCTCCTGATAC+AGG | - | chr5_2:60234784-60234803 | None:intergenic | 40.0% | |
| ! | ATGAACCCAGCAAGAAGTAT+TGG | + | chr5_2:60234799-60234818 | Msa0779070:CDS | 40.0% |
| TGTTCATCTGCTAACTCTGA+AGG | - | chr5_2:60234937-60234956 | None:intergenic | 40.0% | |
| CAACAAAGTTGCATGACGTG+AGG | - | chr5_2:60232889-60232908 | None:intergenic | 45.0% | |
| AGTTCGTGCCTACAACATGT+TGG | + | chr5_2:60233590-60233609 | Msa0779070:intron | 45.0% | |
| ! | TTTGTGGTGTTTGCTGGATG+TGG | + | chr5_2:60233787-60233806 | Msa0779070:CDS | 45.0% |
| TGCTGGATGTGGTTCTTTAG+CGG | + | chr5_2:60233798-60233817 | Msa0779070:CDS | 45.0% | |
| ! | TGGCTCTGTAACATTTCCAG+GGG | + | chr5_2:60233834-60233853 | Msa0779070:CDS | 45.0% |
| ! | TTCCAGGGGTATGTATCACT+TGG | + | chr5_2:60233848-60233867 | Msa0779070:CDS | 45.0% |
| ! | TCCAGGGGTATGTATCACTT+GGG | + | chr5_2:60233849-60233868 | Msa0779070:CDS | 45.0% |
| TCTGTTGGTCATATCTCTGG+AGG | + | chr5_2:60233898-60233917 | Msa0779070:CDS | 45.0% | |
| TCCAAGTGATGGTAACAGCA+GGG | - | chr5_2:60233933-60233952 | None:intergenic | 45.0% | |
| ACGAAAGATGGTCCAAGTGA+TGG | - | chr5_2:60233944-60233963 | None:intergenic | 45.0% | |
| TCACTTGGACCATCTTTCGT+AGG | + | chr5_2:60233944-60233963 | Msa0779070:CDS | 45.0% | |
| !!! | TATTTTGGAACCGTTCCCGT+TGG | + | chr5_2:60234226-60234245 | Msa0779070:CDS | 45.0% |
| ! | AGACTGGCCATTTGATCCAA+CGG | - | chr5_2:60234245-60234264 | None:intergenic | 45.0% |
| ! | TCTTTCGTCGGTTGAAACTG+CGG | - | chr5_2:60234314-60234333 | None:intergenic | 45.0% |
| AGTTTCAACCGACGAAAGAG+CGG | + | chr5_2:60234315-60234334 | Msa0779070:CDS | 45.0% | |
| AGTCATTCCAATGGCAACAC+CGG | - | chr5_2:60234636-60234655 | None:intergenic | 45.0% | |
| ! | TTTTGCAGACCTGTATCAGG+AGG | + | chr5_2:60234772-60234791 | Msa0779070:intron | 45.0% |
| CAGGACCAATACTTCTTGCT+GGG | - | chr5_2:60234807-60234826 | None:intergenic | 45.0% | |
| CAAAGGACTGTGGATATACG+TGG | + | chr5_2:60234846-60234865 | Msa0779070:CDS | 45.0% | |
| ! | TACGTGGTTGGTCCAATTGT+TGG | + | chr5_2:60234862-60234881 | Msa0779070:CDS | 45.0% |
| CCAGCTATAGCTCCAACAAT+TGG | - | chr5_2:60234877-60234896 | None:intergenic | 45.0% | |
| CCAATTGTTGGAGCTATAGC+TGG | + | chr5_2:60234874-60234893 | Msa0779070:CDS | 45.0% | |
| CAACAAAGTTGCATGACGTG+AGG | - | chr5_2:60232889-60232908 | None:intergenic | 45.0% | |
| AGTTCGTGCCTACAACATGT+TGG | + | chr5_2:60233590-60233609 | Msa0779070:intron | 45.0% | |
| ! | TTTGTGGTGTTTGCTGGATG+TGG | + | chr5_2:60233787-60233806 | Msa0779070:CDS | 45.0% |
| TGCTGGATGTGGTTCTTTAG+CGG | + | chr5_2:60233798-60233817 | Msa0779070:CDS | 45.0% | |
| ! | TGGCTCTGTAACATTTCCAG+GGG | + | chr5_2:60233834-60233853 | Msa0779070:CDS | 45.0% |
| ! | TTCCAGGGGTATGTATCACT+TGG | + | chr5_2:60233848-60233867 | Msa0779070:CDS | 45.0% |
| ! | TCCAGGGGTATGTATCACTT+GGG | + | chr5_2:60233849-60233868 | Msa0779070:CDS | 45.0% |
| TCTGTTGGTCATATCTCTGG+AGG | + | chr5_2:60233898-60233917 | Msa0779070:CDS | 45.0% | |
| TCCAAGTGATGGTAACAGCA+GGG | - | chr5_2:60233933-60233952 | None:intergenic | 45.0% | |
| ACGAAAGATGGTCCAAGTGA+TGG | - | chr5_2:60233944-60233963 | None:intergenic | 45.0% | |
| TCACTTGGACCATCTTTCGT+AGG | + | chr5_2:60233944-60233963 | Msa0779070:CDS | 45.0% | |
| !!! | TATTTTGGAACCGTTCCCGT+TGG | + | chr5_2:60234226-60234245 | Msa0779070:CDS | 45.0% |
| ! | AGACTGGCCATTTGATCCAA+CGG | - | chr5_2:60234245-60234264 | None:intergenic | 45.0% |
| ! | TCTTTCGTCGGTTGAAACTG+CGG | - | chr5_2:60234314-60234333 | None:intergenic | 45.0% |
| AGTTTCAACCGACGAAAGAG+CGG | + | chr5_2:60234315-60234334 | Msa0779070:CDS | 45.0% | |
| AGTCATTCCAATGGCAACAC+CGG | - | chr5_2:60234636-60234655 | None:intergenic | 45.0% | |
| ! | TTTTGCAGACCTGTATCAGG+AGG | + | chr5_2:60234772-60234791 | Msa0779070:intron | 45.0% |
| CAGGACCAATACTTCTTGCT+GGG | - | chr5_2:60234807-60234826 | None:intergenic | 45.0% | |
| CAAAGGACTGTGGATATACG+TGG | + | chr5_2:60234846-60234865 | Msa0779070:CDS | 45.0% | |
| ! | TACGTGGTTGGTCCAATTGT+TGG | + | chr5_2:60234862-60234881 | Msa0779070:CDS | 45.0% |
| CCAGCTATAGCTCCAACAAT+TGG | - | chr5_2:60234877-60234896 | None:intergenic | 45.0% | |
| CCAATTGTTGGAGCTATAGC+TGG | + | chr5_2:60234874-60234893 | Msa0779070:CDS | 45.0% | |
| GGAGACGATGCTCTGATTGA+AGG | + | chr5_2:60233021-60233040 | Msa0779070:intron | 50.0% | |
| TGGATGTGGTTCTTTAGCGG+TGG | + | chr5_2:60233801-60233820 | Msa0779070:CDS | 50.0% | |
| ! | CCAGGGGTATGTATCACTTG+GGG | + | chr5_2:60233850-60233869 | Msa0779070:CDS | 50.0% |
| ACCCTGCTGTTACCATCACT+TGG | + | chr5_2:60233929-60233948 | Msa0779070:CDS | 50.0% | |
| GTCCAAGTGATGGTAACAGC+AGG | - | chr5_2:60233934-60233953 | None:intergenic | 50.0% | |
| AAGTGGGGTCCTACGAAAGA+TGG | - | chr5_2:60233956-60233975 | None:intergenic | 50.0% | |
| GTAGGATCAACGCTTGCAAG+CGG | + | chr5_2:60234166-60234185 | Msa0779070:CDS | 50.0% | |
| ACCGTTCCCGTTGGATCAAA+TGG | + | chr5_2:60234235-60234254 | Msa0779070:CDS | 50.0% | |
| GCCATTTGATCCAACGGGAA+CGG | - | chr5_2:60234239-60234258 | None:intergenic | 50.0% | |
| ! | GACTGGCCATTTGATCCAAC+GGG | - | chr5_2:60234244-60234263 | None:intergenic | 50.0% |
| AGTGCATACCGCTCTTTCGT+CGG | - | chr5_2:60234326-60234345 | None:intergenic | 50.0% | |
| TGGCAGGTGAATGATTTCGC+CGG | + | chr5_2:60234614-60234633 | Msa0779070:intron | 50.0% | |
| GCAGGACCAATACTTCTTGC+TGG | - | chr5_2:60234808-60234827 | None:intergenic | 50.0% | |
| GGACTGTGGATATACGTGGT+TGG | + | chr5_2:60234850-60234869 | Msa0779070:CDS | 50.0% | |
| GGAGACGATGCTCTGATTGA+AGG | + | chr5_2:60233021-60233040 | Msa0779070:intron | 50.0% | |
| TGGATGTGGTTCTTTAGCGG+TGG | + | chr5_2:60233801-60233820 | Msa0779070:CDS | 50.0% | |
| ! | CCAGGGGTATGTATCACTTG+GGG | + | chr5_2:60233850-60233869 | Msa0779070:CDS | 50.0% |
| ACCCTGCTGTTACCATCACT+TGG | + | chr5_2:60233929-60233948 | Msa0779070:CDS | 50.0% | |
| GTCCAAGTGATGGTAACAGC+AGG | - | chr5_2:60233934-60233953 | None:intergenic | 50.0% | |
| AAGTGGGGTCCTACGAAAGA+TGG | - | chr5_2:60233956-60233975 | None:intergenic | 50.0% | |
| GTAGGATCAACGCTTGCAAG+CGG | + | chr5_2:60234166-60234185 | Msa0779070:CDS | 50.0% | |
| ACCGTTCCCGTTGGATCAAA+TGG | + | chr5_2:60234235-60234254 | Msa0779070:CDS | 50.0% | |
| GCCATTTGATCCAACGGGAA+CGG | - | chr5_2:60234239-60234258 | None:intergenic | 50.0% | |
| ! | GACTGGCCATTTGATCCAAC+GGG | - | chr5_2:60234244-60234263 | None:intergenic | 50.0% |
| AGTGCATACCGCTCTTTCGT+CGG | - | chr5_2:60234326-60234345 | None:intergenic | 50.0% | |
| TGGCAGGTGAATGATTTCGC+CGG | + | chr5_2:60234614-60234633 | Msa0779070:intron | 50.0% | |
| GCAGGACCAATACTTCTTGC+TGG | - | chr5_2:60234808-60234827 | None:intergenic | 50.0% | |
| GGACTGTGGATATACGTGGT+TGG | + | chr5_2:60234850-60234869 | Msa0779070:CDS | 50.0% | |
| CCCCAAGTGATACATACCCC+TGG | - | chr5_2:60233853-60233872 | None:intergenic | 55.0% | |
| TCGTAGGACCCCACTTAGAG+AGG | + | chr5_2:60233960-60233979 | Msa0779070:CDS | 55.0% | |
| !! | GATTTCGCCGGTGTTGCCAT+TGG | + | chr5_2:60234626-60234645 | Msa0779070:CDS | 55.0% |
| CCCCAAGTGATACATACCCC+TGG | - | chr5_2:60233853-60233872 | None:intergenic | 55.0% | |
| TCGTAGGACCCCACTTAGAG+AGG | + | chr5_2:60233960-60233979 | Msa0779070:CDS | 55.0% | |
| !! | GATTTCGCCGGTGTTGCCAT+TGG | + | chr5_2:60234626-60234645 | Msa0779070:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60232826 | 60234981 | 60232826 | ID=Msa0779070;Name=Msa0779070 |
| chr5_2 | mRNA | 60232826 | 60234981 | 60232826 | ID=Msa0779070-mRNA-1;Parent=Msa0779070;Name=Msa0779070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.75|0.4|1|1|1|5|0|266 |
| chr5_2 | exon | 60232826 | 60232942 | 60232826 | ID=Msa0779070-mRNA-1:exon:17611;Parent=Msa0779070-mRNA-1 |
| chr5_2 | exon | 60233760 | 60233981 | 60233760 | ID=Msa0779070-mRNA-1:exon:17612;Parent=Msa0779070-mRNA-1 |
| chr5_2 | exon | 60234139 | 60234336 | 60234139 | ID=Msa0779070-mRNA-1:exon:17613;Parent=Msa0779070-mRNA-1 |
| chr5_2 | exon | 60234620 | 60234681 | 60234620 | ID=Msa0779070-mRNA-1:exon:17614;Parent=Msa0779070-mRNA-1 |
| chr5_2 | exon | 60234780 | 60234981 | 60234780 | ID=Msa0779070-mRNA-1:exon:17615;Parent=Msa0779070-mRNA-1 |
| chr5_2 | CDS | 60232826 | 60232942 | 60232826 | ID=Msa0779070-mRNA-1:cds;Parent=Msa0779070-mRNA-1 |
| chr5_2 | CDS | 60233760 | 60233981 | 60233760 | ID=Msa0779070-mRNA-1:cds;Parent=Msa0779070-mRNA-1 |
| chr5_2 | CDS | 60234139 | 60234336 | 60234139 | ID=Msa0779070-mRNA-1:cds;Parent=Msa0779070-mRNA-1 |
| chr5_2 | CDS | 60234620 | 60234681 | 60234620 | ID=Msa0779070-mRNA-1:cds;Parent=Msa0779070-mRNA-1 |
| chr5_2 | CDS | 60234780 | 60234981 | 60234780 | ID=Msa0779070-mRNA-1:cds;Parent=Msa0779070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
