Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737320 | AES99338.1 | 96.269 | 268 | 8 | 1 | 1 | 266 | 1 | 268 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737320 | sp|P49173|NIP1_NICAL | 66.031 | 262 | 82 | 2 | 4 | 258 | 3 | 264 | 6.73e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737320 | G7KBN5 | 96.269 | 268 | 8 | 1 | 1 | 266 | 1 | 268 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737320 | Msa0779070 | 0.806642 | 7.449244e-50 | -8.615850e-47 |
| Msa0737320 | Msa0867350 | 0.808869 | 2.505961e-50 | -8.615850e-47 |
| Msa0737320 | Msa0898730 | 0.805451 | 1.326358e-49 | -8.615850e-47 |
| Msa0737320 | Msa1176160 | 0.814056 | 1.871005e-51 | -8.615850e-47 |
| Msa0737320 | Msa1305510 | 0.820587 | 6.338956e-53 | -8.615850e-47 |
| Msa0737320 | Msa1379970 | 0.800313 | 1.528016e-48 | -8.615850e-47 |
| Msa0306120 | Msa0737320 | 0.807589 | 4.694477e-50 | -8.615850e-47 |
| Msa0359250 | Msa0737320 | 0.807679 | 4.493979e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737320 | MtrunA17_Chr5g0435051 | 96.269 | 268 | 8 | 1 | 1 | 266 | 1 | 268 | 0.0 | 518 |
| Msa0737320 | MtrunA17_Chr3g0079421 | 75.000 | 244 | 59 | 1 | 17 | 258 | 5 | 248 | 8.36e-136 | 383 |
| Msa0737320 | MtrunA17_Chr4g0044201 | 57.028 | 249 | 87 | 3 | 11 | 252 | 4 | 239 | 1.04e-98 | 289 |
| Msa0737320 | MtrunA17_Chr8g0379911 | 55.310 | 226 | 100 | 1 | 28 | 252 | 28 | 253 | 1.03e-86 | 259 |
| Msa0737320 | MtrunA17_Chr2g0284591 | 50.794 | 252 | 115 | 3 | 7 | 252 | 3 | 251 | 2.82e-86 | 258 |
| Msa0737320 | MtrunA17_Chr2g0284581 | 52.720 | 239 | 104 | 3 | 20 | 252 | 18 | 253 | 3.37e-84 | 253 |
| Msa0737320 | MtrunA17_Chr2g0284611 | 53.913 | 230 | 98 | 3 | 31 | 255 | 31 | 257 | 9.65e-83 | 249 |
| Msa0737320 | MtrunA17_Chr8g0379901 | 49.609 | 256 | 123 | 4 | 1 | 252 | 1 | 254 | 4.18e-82 | 248 |
| Msa0737320 | MtrunA17_Chr2g0284631 | 46.442 | 267 | 135 | 4 | 3 | 264 | 57 | 320 | 5.25e-82 | 249 |
| Msa0737320 | MtrunA17_Chr2g0284601 | 54.680 | 203 | 85 | 2 | 54 | 252 | 6 | 205 | 3.03e-73 | 223 |
| Msa0737320 | MtrunA17_Chr7g0217331 | 44.843 | 223 | 121 | 2 | 38 | 259 | 37 | 258 | 9.02e-62 | 196 |
| Msa0737320 | MtrunA17_Chr4g0001221 | 45.607 | 239 | 121 | 3 | 27 | 264 | 64 | 294 | 8.91e-60 | 191 |
| Msa0737320 | MtrunA17_Chr5g0426131 | 38.431 | 255 | 143 | 5 | 12 | 261 | 16 | 261 | 2.80e-59 | 189 |
| Msa0737320 | MtrunA17_Chr2g0333771 | 45.455 | 220 | 115 | 3 | 36 | 254 | 78 | 293 | 1.32e-56 | 183 |
| Msa0737320 | MtrunA17_Chr1g0201331 | 42.593 | 216 | 122 | 2 | 33 | 247 | 69 | 283 | 4.09e-51 | 169 |
| Msa0737320 | MtrunA17_Chr1g0184541 | 37.209 | 215 | 133 | 2 | 34 | 247 | 58 | 271 | 6.15e-43 | 147 |
| Msa0737320 | MtrunA17_Chr2g0331261 | 36.402 | 239 | 124 | 8 | 33 | 252 | 15 | 244 | 8.00e-30 | 112 |
| Msa0737320 | MtrunA17_Chr4g0001111 | 44.231 | 156 | 85 | 2 | 27 | 181 | 64 | 218 | 5.95e-28 | 107 |
| Msa0737320 | MtrunA17_Chr1g0146161 | 36.522 | 230 | 137 | 7 | 37 | 259 | 18 | 245 | 6.05e-28 | 107 |
| Msa0737320 | MtrunA17_Chr6g0478191 | 33.475 | 236 | 145 | 4 | 37 | 260 | 20 | 255 | 1.28e-27 | 107 |
| Msa0737320 | MtrunA17_Chr8g0340161 | 35.652 | 230 | 130 | 8 | 37 | 252 | 18 | 243 | 2.77e-27 | 105 |
| Msa0737320 | MtrunA17_Chr1g0188771 | 33.628 | 226 | 142 | 3 | 37 | 254 | 20 | 245 | 3.11e-27 | 105 |
| Msa0737320 | MtrunA17_Chr1g0146171 | 36.957 | 230 | 134 | 8 | 37 | 258 | 18 | 244 | 1.09e-26 | 104 |
| Msa0737320 | MtrunA17_Chr5g0399341 | 35.096 | 208 | 124 | 5 | 37 | 235 | 18 | 223 | 3.96e-24 | 97.4 |
| Msa0737320 | MtrunA17_Chr2g0326621 | 34.921 | 189 | 109 | 5 | 71 | 246 | 84 | 271 | 2.29e-23 | 96.3 |
| Msa0737320 | MtrunA17_Chr4g0001121 | 48.235 | 85 | 37 | 1 | 180 | 264 | 10 | 87 | 5.72e-23 | 90.1 |
| Msa0737320 | MtrunA17_Chr5g0436701 | 28.090 | 267 | 162 | 6 | 2 | 241 | 12 | 275 | 1.26e-22 | 94.4 |
| Msa0737320 | MtrunA17_Chr7g0264961 | 32.579 | 221 | 134 | 5 | 37 | 246 | 20 | 236 | 2.68e-22 | 92.4 |
| Msa0737320 | MtrunA17_Chr1g0212671 | 32.599 | 227 | 123 | 5 | 37 | 244 | 20 | 235 | 1.33e-21 | 90.9 |
| Msa0737320 | MtrunA17_Chr4g0001161 | 43.939 | 132 | 72 | 2 | 51 | 181 | 1 | 131 | 3.71e-21 | 86.7 |
| Msa0737320 | MtrunA17_Chr3g0145671 | 30.568 | 229 | 141 | 6 | 35 | 246 | 34 | 261 | 5.72e-21 | 89.7 |
| Msa0737320 | MtrunA17_Chr7g0264111 | 30.288 | 208 | 123 | 5 | 71 | 262 | 82 | 283 | 7.31e-21 | 89.4 |
| Msa0737320 | MtrunA17_Chr4g0030861 | 33.032 | 221 | 118 | 7 | 43 | 244 | 26 | 235 | 1.43e-20 | 87.8 |
| Msa0737320 | MtrunA17_Chr4g0029071 | 31.771 | 192 | 111 | 5 | 71 | 246 | 82 | 269 | 2.32e-20 | 88.2 |
| Msa0737320 | MtrunA17_Chr5g0397391 | 30.208 | 192 | 121 | 4 | 66 | 244 | 84 | 275 | 6.91e-20 | 86.7 |
| Msa0737320 | MtrunA17_Chr3g0113211 | 27.273 | 253 | 159 | 6 | 9 | 241 | 28 | 275 | 1.16e-19 | 86.3 |
| Msa0737320 | MtrunA17_Chr7g0222791 | 31.278 | 227 | 126 | 5 | 37 | 244 | 20 | 235 | 1.50e-19 | 85.1 |
| Msa0737320 | MtrunA17_Chr1g0199731 | 28.571 | 273 | 164 | 8 | 1 | 246 | 1 | 269 | 1.86e-19 | 85.5 |
| Msa0737320 | MtrunA17_Chr8g0386961 | 28.646 | 192 | 124 | 3 | 66 | 244 | 84 | 275 | 2.48e-18 | 82.4 |
| Msa0737320 | MtrunA17_Chr4g0006001 | 28.448 | 232 | 151 | 6 | 37 | 254 | 59 | 289 | 9.96e-17 | 78.2 |
| Msa0737320 | MtrunA17_Chr4g0001151 | 41.481 | 135 | 56 | 4 | 51 | 181 | 1 | 116 | 3.31e-16 | 77.0 |
| Msa0737320 | MtrunA17_Chr4g0020781 | 32.571 | 175 | 112 | 4 | 85 | 257 | 32 | 202 | 5.97e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737320 | AT5G37820.1 | 59.690 | 258 | 98 | 2 | 1 | 252 | 1 | 258 | 5.04e-110 | 319 |
| Msa0737320 | AT5G37820.2 | 59.690 | 258 | 98 | 2 | 1 | 252 | 37 | 294 | 9.26e-110 | 320 |
| Msa0737320 | AT5G37810.1 | 57.364 | 258 | 104 | 2 | 1 | 252 | 1 | 258 | 5.38e-106 | 309 |
| Msa0737320 | AT4G18910.1 | 54.386 | 228 | 96 | 3 | 33 | 252 | 47 | 274 | 3.47e-83 | 251 |
| Msa0737320 | AT4G19030.1 | 47.126 | 261 | 128 | 5 | 1 | 252 | 18 | 277 | 5.92e-78 | 238 |
| Msa0737320 | AT1G31885.1 | 50.442 | 226 | 104 | 3 | 33 | 250 | 38 | 263 | 1.17e-75 | 233 |
| Msa0737320 | AT1G31885.2 | 51.675 | 209 | 93 | 3 | 50 | 250 | 1 | 209 | 1.55e-69 | 216 |
| Msa0737320 | AT2G34390.1 | 43.220 | 236 | 121 | 4 | 33 | 260 | 43 | 273 | 6.86e-66 | 207 |
| Msa0737320 | AT2G34390.2 | 43.103 | 232 | 119 | 4 | 39 | 262 | 7 | 233 | 7.73e-64 | 200 |
| Msa0737320 | AT4G18910.2 | 52.841 | 176 | 75 | 3 | 33 | 200 | 47 | 222 | 5.28e-57 | 182 |
| Msa0737320 | AT4G19030.3 | 44.019 | 209 | 107 | 5 | 1 | 200 | 18 | 225 | 2.60e-53 | 172 |
| Msa0737320 | AT1G80760.1 | 40.157 | 254 | 144 | 5 | 11 | 262 | 54 | 301 | 1.29e-52 | 173 |
| Msa0737320 | AT4G10380.1 | 42.925 | 212 | 119 | 2 | 34 | 244 | 74 | 284 | 3.12e-49 | 165 |
| Msa0737320 | AT4G19030.2 | 43.750 | 192 | 98 | 5 | 1 | 183 | 18 | 208 | 5.69e-46 | 154 |
| Msa0737320 | AT2G34390.3 | 40.341 | 176 | 96 | 3 | 33 | 200 | 43 | 217 | 1.80e-42 | 144 |
| Msa0737320 | AT3G06100.1 | 33.463 | 257 | 158 | 6 | 3 | 250 | 4 | 256 | 1.06e-39 | 139 |
| Msa0737320 | AT2G34390.4 | 41.139 | 158 | 84 | 3 | 33 | 182 | 43 | 199 | 4.73e-38 | 133 |
| Msa0737320 | AT3G06100.2 | 36.321 | 212 | 129 | 4 | 41 | 250 | 1 | 208 | 6.66e-37 | 130 |
| Msa0737320 | AT1G17810.1 | 33.193 | 238 | 144 | 5 | 37 | 259 | 23 | 260 | 3.02e-28 | 109 |
| Msa0737320 | AT3G16240.1 | 33.610 | 241 | 143 | 6 | 33 | 260 | 14 | 250 | 3.26e-28 | 108 |
| Msa0737320 | AT1G73190.1 | 33.478 | 230 | 126 | 7 | 37 | 246 | 23 | 245 | 3.59e-26 | 103 |
| Msa0737320 | AT2G25810.1 | 34.934 | 229 | 142 | 5 | 37 | 259 | 18 | 245 | 4.32e-26 | 103 |
| Msa0737320 | AT5G47450.1 | 33.929 | 224 | 127 | 7 | 33 | 241 | 14 | 231 | 5.00e-26 | 102 |
| Msa0737320 | AT2G29870.1 | 45.794 | 107 | 54 | 1 | 154 | 260 | 22 | 124 | 7.71e-26 | 99.4 |
| Msa0737320 | AT4G17340.1 | 32.569 | 218 | 138 | 4 | 33 | 241 | 14 | 231 | 1.54e-23 | 96.3 |
| Msa0737320 | AT3G26520.1 | 33.184 | 223 | 131 | 6 | 37 | 246 | 21 | 238 | 1.68e-23 | 96.3 |
| Msa0737320 | AT1G31885.3 | 43.529 | 85 | 47 | 1 | 33 | 116 | 38 | 122 | 5.24e-23 | 92.0 |
| Msa0737320 | AT2G16850.1 | 31.429 | 245 | 148 | 7 | 35 | 262 | 33 | 274 | 8.49e-23 | 94.7 |
| Msa0737320 | AT4G01470.1 | 32.599 | 227 | 123 | 7 | 37 | 244 | 20 | 235 | 1.06e-22 | 94.0 |
| Msa0737320 | AT1G01620.1 | 30.303 | 231 | 148 | 5 | 37 | 254 | 55 | 285 | 1.93e-21 | 91.3 |
| Msa0737320 | AT3G53420.1 | 28.417 | 278 | 173 | 8 | 1 | 253 | 1 | 277 | 3.27e-21 | 90.9 |
| Msa0737320 | AT3G53420.2 | 28.417 | 278 | 173 | 8 | 1 | 253 | 1 | 277 | 3.27e-21 | 90.9 |
| Msa0737320 | AT4G00430.1 | 29.870 | 231 | 149 | 5 | 37 | 254 | 56 | 286 | 4.96e-21 | 90.1 |
| Msa0737320 | AT5G60660.1 | 31.197 | 234 | 137 | 7 | 36 | 246 | 37 | 269 | 8.65e-21 | 89.7 |
| Msa0737320 | AT1G01620.2 | 31.683 | 202 | 125 | 5 | 66 | 254 | 12 | 213 | 9.01e-21 | 88.2 |
| Msa0737320 | AT4G35100.1 | 30.085 | 236 | 139 | 7 | 32 | 246 | 32 | 262 | 1.18e-20 | 89.0 |
| Msa0737320 | AT4G35100.2 | 30.085 | 236 | 139 | 7 | 32 | 246 | 32 | 262 | 1.18e-20 | 89.0 |
| Msa0737320 | AT4G23400.1 | 29.004 | 231 | 151 | 4 | 37 | 254 | 56 | 286 | 2.56e-20 | 88.2 |
| Msa0737320 | AT2G37170.1 | 29.675 | 246 | 142 | 6 | 35 | 253 | 34 | 275 | 3.44e-20 | 87.8 |
| Msa0737320 | AT3G06100.3 | 35.971 | 139 | 84 | 3 | 113 | 250 | 41 | 175 | 6.05e-20 | 85.5 |
| Msa0737320 | AT2G37170.2 | 29.675 | 246 | 142 | 6 | 35 | 253 | 77 | 318 | 6.48e-20 | 87.8 |
| Msa0737320 | AT2G36830.1 | 35.484 | 217 | 125 | 7 | 37 | 241 | 20 | 233 | 7.80e-20 | 86.3 |
| Msa0737320 | AT2G37180.1 | 29.752 | 242 | 147 | 5 | 35 | 253 | 34 | 275 | 1.07e-19 | 86.7 |
| Msa0737320 | AT3G61430.2 | 29.954 | 217 | 140 | 4 | 37 | 241 | 55 | 271 | 2.66e-19 | 85.5 |
| Msa0737320 | AT3G61430.1 | 29.954 | 217 | 140 | 4 | 37 | 241 | 55 | 271 | 2.66e-19 | 85.5 |
| Msa0737320 | AT2G39010.1 | 26.812 | 276 | 158 | 7 | 5 | 246 | 3 | 268 | 3.01e-19 | 85.5 |
| Msa0737320 | AT3G47440.1 | 30.263 | 228 | 134 | 7 | 33 | 244 | 18 | 236 | 3.12e-18 | 82.0 |
| Msa0737320 | AT3G54820.1 | 29.167 | 192 | 116 | 4 | 71 | 246 | 81 | 268 | 3.18e-18 | 82.4 |
| Msa0737320 | AT2G45960.1 | 29.032 | 217 | 142 | 4 | 37 | 241 | 55 | 271 | 3.31e-18 | 82.4 |
| Msa0737320 | AT2G45960.2 | 30.052 | 193 | 122 | 4 | 41 | 220 | 55 | 247 | 1.19e-14 | 72.4 |
| Msa0737320 | AT2G45960.3 | 29.319 | 191 | 126 | 3 | 37 | 218 | 55 | 245 | 1.46e-14 | 72.4 |
Find 68 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACATCCAAAACTTATTT+TGG | 0.107517 | 5_1:+54508671 | Msa0737320:CDS |
| TATGGCTCTGTGACATTTCC+AGG | 0.243965 | 5_1:+54508298 | Msa0737320:CDS |
| ATTTGTTGCAGGCCTGTATC+AGG | 0.246243 | 5_1:+54509238 | Msa0737320:intron |
| TAACTCTGAAGGTGACTTTA+TGG | 0.246382 | 5_1:-54509392 | None:intergenic |
| AACGGTTCCAAAATAAGTTT+TGG | 0.262047 | 5_1:-54508678 | None:intergenic |
| ACATACTTTGTGGTGTTTGC+TGG | 0.334538 | 5_1:+54508247 | Msa0737320:CDS |
| GCAGGACCAATACTTCTTGC+TGG | 0.382052 | 5_1:-54509274 | None:intergenic |
| TACTCTGTTGGTCATATCTC+TGG | 0.384052 | 5_1:+54508361 | Msa0737320:CDS |
| AGTTAGCAGATGAACAATTC+AGG | 0.409928 | 5_1:+54509410 | Msa0737320:CDS |
| ACCGTTCCCGTTGGATCAAA+TGG | 0.412321 | 5_1:+54508695 | Msa0737320:CDS |
| ATGTTGAATGTCTTCATTGC+TGG | 0.417160 | 5_1:+54509099 | Msa0737320:CDS |
| TACGTGGTTGGTCCAATTGT+TGG | 0.427617 | 5_1:+54509331 | Msa0737320:CDS |
| GTAGCGGTGGATAAGATCTA+TGG | 0.440961 | 5_1:+54508280 | Msa0737320:CDS |
| CAATTCAGGAACATTGTTGT+AGG | 0.443646 | 5_1:+54509424 | Msa0737320:CDS |
| TCCAGGGGTATGTATCACTT+GGG | 0.444080 | 5_1:+54508315 | Msa0737320:CDS |
| CCAGCTATAGCTCCAACAAT+TGG | 0.450905 | 5_1:-54509343 | None:intergenic |
| GACTGGCCATTTGATCCAAC+GGG | 0.452555 | 5_1:-54508701 | None:intergenic |
| CCAATTGTTGGAGCTATAGC+TGG | 0.461522 | 5_1:+54509343 | Msa0737320:CDS |
| CTAACTTACCTTCTGTATCA+AGG | 0.467222 | 5_1:-54507413 | None:intergenic |
| TTTGTGGTGTTTGCTGGATG+TGG | 0.467513 | 5_1:+54508253 | Msa0737320:CDS |
| TTCCAGGGGTATGTATCACT+TGG | 0.477471 | 5_1:+54508314 | Msa0737320:CDS |
| GATTTCGCCGGTGTTGCCGT+TGG | 0.484965 | 5_1:+54509066 | Msa0737320:CDS |
| TCGTAGGACCTCACTTAAAG+AGG | 0.488475 | 5_1:+54508426 | Msa0737320:CDS |
| AATCATTGGGACATACTTTG+TGG | 0.492003 | 5_1:+54508237 | Msa0737320:CDS |
| GAAATTTCAAGTGTTGAAGA+AGG | 0.496374 | 5_1:+54507343 | Msa0737320:CDS |
| ACCCTGCTGTTACCATCACT+TGG | 0.498343 | 5_1:+54508395 | Msa0737320:CDS |
| AGGTGATTGCAGAAATCATT+GGG | 0.504577 | 5_1:+54508224 | Msa0737320:intron |
| TAGGTGATTGCAGAAATCAT+TGG | 0.506637 | 5_1:+54508223 | Msa0737320:intron |
| ATGAACCCAGCAAGAAGTAT+TGG | 0.512100 | 5_1:+54509268 | Msa0737320:CDS |
| GTCCAAGTGATGGTAACAGC+AGG | 0.513012 | 5_1:-54508397 | None:intergenic |
| CAGGACCAATACTTCTTGCT+GGG | 0.515882 | 5_1:-54509273 | None:intergenic |
| CCAGGGGTATGTATCACTTG+GGG | 0.515908 | 5_1:+54508316 | Msa0737320:CDS |
| AGTCATTCCAACGGCAACAC+CGG | 0.518480 | 5_1:-54509073 | None:intergenic |
| AAGTGAGGTCCTACGAAAGA+TGG | 0.521239 | 5_1:-54508419 | None:intergenic |
| TTTGTTGCAGGCCTGTATCA+GGG | 0.538574 | 5_1:+54509239 | Msa0737320:intron |
| ATGGTCATGTGTTACTCTGT+TGG | 0.538710 | 5_1:+54508349 | Msa0737320:CDS |
| TGTTGAATGTCTTCATTGCT+GGG | 0.543020 | 5_1:+54509100 | Msa0737320:CDS |
| AGTGCATACCGCTCTTTCGT+CGG | 0.544476 | 5_1:-54508783 | None:intergenic |
| GCCATTTGATCCAACGGGAA+CGG | 0.550503 | 5_1:-54508696 | None:intergenic |
| TGTTCATCTGCTAACTCTGA+AGG | 0.556911 | 5_1:-54509403 | None:intergenic |
| CAGGGGTATGTATCACTTGG+GGG | 0.558009 | 5_1:+54508317 | Msa0737320:CDS |
| TGATTTCTGCAACTAAAGAC+TGG | 0.562045 | 5_1:-54508718 | None:intergenic |
| CTTAATGTTTGTCATTTCAG+CGG | 0.564296 | 5_1:+54508754 | Msa0737320:CDS |
| TAAACATGTACTATAAGTGC+AGG | 0.575709 | 5_1:-54509292 | None:intergenic |
| ATGGCTCTGTGACATTTCCA+GGG | 0.578427 | 5_1:+54508299 | Msa0737320:CDS |
| AGACTGGCCATTTGATCCAA+CGG | 0.587258 | 5_1:-54508702 | None:intergenic |
| ACGAAAGATGGTCCAAGTGA+TGG | 0.593945 | 5_1:-54508407 | None:intergenic |
| ATTAAGTACCTCTTTAAGTG+AGG | 0.596242 | 5_1:-54508434 | None:intergenic |
| AACAAAGTTGCATGACGTGA+GGG | 0.603296 | 5_1:-54507369 | None:intergenic |
| TTGTTGCAGGCCTGTATCAG+GGG | 0.605834 | 5_1:+54509240 | Msa0737320:intron |
| TACGATAACCTTGATACAGA+AGG | 0.613840 | 5_1:+54507405 | Msa0737320:CDS |
| TGCTGGATGTGGTTCTGTAG+CGG | 0.615636 | 5_1:+54508264 | Msa0737320:CDS |
| CAACAAAGTTGCATGACGTG+AGG | 0.616602 | 5_1:-54507370 | None:intergenic |
| CCCCAAGTGATACATACCCC+TGG | 0.616740 | 5_1:-54508316 | None:intergenic |
| GTAGGATCAACGCTTGCAAG+TGG | 0.619145 | 5_1:+54508626 | Msa0737320:CDS |
| CAAAGGACTGTGGATATACG+TGG | 0.621143 | 5_1:+54509315 | Msa0737320:CDS |
| TCACTTGGACCATCTTTCGT+AGG | 0.622666 | 5_1:+54508410 | Msa0737320:CDS |
| CAACATTATAGTCATTCCAA+CGG | 0.630285 | 5_1:-54509082 | None:intergenic |
| TCTGTTGGTCATATCTCTGG+AGG | 0.632181 | 5_1:+54508364 | Msa0737320:CDS |
| CTTATAGTACATGTTTACAA+AGG | 0.635477 | 5_1:+54509298 | Msa0737320:CDS |
| TGGCTCTGTGACATTTCCAG+GGG | 0.640626 | 5_1:+54508300 | Msa0737320:CDS |
| TGGCAGGTGAATGATTTCGC+CGG | 0.641490 | 5_1:+54509054 | Msa0737320:intron |
| TGTTGCAGGCCTGTATCAGG+GGG | 0.649998 | 5_1:+54509241 | Msa0737320:intron |
| GGACTGTGGATATACGTGGT+TGG | 0.657716 | 5_1:+54509319 | Msa0737320:CDS |
| TCCAAGTGATGGTAACAGCA+GGG | 0.661110 | 5_1:-54508396 | None:intergenic |
| GGTTTCAACCGACGAAAGAG+CGG | 0.671248 | 5_1:+54508775 | Msa0737320:CDS |
| TACATGTTTACAAAGGACTG+TGG | 0.686839 | 5_1:+54509305 | Msa0737320:CDS |
| TGGATGTGGTTCTGTAGCGG+TGG | 0.720221 | 5_1:+54508267 | Msa0737320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTTTAAAAAATCACAA+TGG | + | chr5_1:54507972-54507991 | Msa0737320:intron | 15.0% |
| !! | TAAATTAATCAATACATATG+TGG | - | chr5_1:54508185-54508204 | None:intergenic | 15.0% |
| !! | AAATAAAATGTTATCATCAT+TGG | - | chr5_1:54508876-54508895 | None:intergenic | 15.0% |
| !! | TTAAAATGAATGATATAAAG+TGG | - | chr5_1:54508901-54508920 | None:intergenic | 15.0% |
| !!! | TAACTTTTAAAAAATCACAA+TGG | + | chr5_1:54507972-54507991 | Msa0737320:intron | 15.0% |
| !! | TAAATTAATCAATACATATG+TGG | - | chr5_1:54508185-54508204 | None:intergenic | 15.0% |
| !! | AAATAAAATGTTATCATCAT+TGG | - | chr5_1:54508876-54508895 | None:intergenic | 15.0% |
| !! | TTAAAATGAATGATATAAAG+TGG | - | chr5_1:54508901-54508920 | None:intergenic | 15.0% |
| !!! | TTAAATGTATGTTTTATGGA+TGG | + | chr5_1:54507566-54507585 | Msa0737320:intron | 20.0% |
| !!! | TTAGCTTTTTTTTTCTTTCT+CGG | + | chr5_1:54507663-54507682 | Msa0737320:intron | 20.0% |
| !!! | CTAAAATAAACACCATTTTT+CGG | - | chr5_1:54507702-54507721 | None:intergenic | 20.0% |
| !!! | GAAAAATGGTGTTTATTTTA+GGG | + | chr5_1:54507701-54507720 | Msa0737320:intron | 20.0% |
| !!! | GTCATAAAAGATTCTAAAAA+TGG | - | chr5_1:54507815-54507834 | None:intergenic | 20.0% |
| !! | TCTTGATTTAGAAAAGAAAA+CGG | + | chr5_1:54507835-54507854 | Msa0737320:intron | 20.0% |
| !! | TTTGGTAAAAAAACATAAGA+GGG | - | chr5_1:54507864-54507883 | None:intergenic | 20.0% |
| !! | ATTTGGTAAAAAAACATAAG+AGG | - | chr5_1:54507865-54507884 | None:intergenic | 20.0% |
| !!! | TTAAATGTATGTTTTATGGA+TGG | + | chr5_1:54507566-54507585 | Msa0737320:intron | 20.0% |
| !!! | TTAGCTTTTTTTTTCTTTCT+CGG | + | chr5_1:54507663-54507682 | Msa0737320:intron | 20.0% |
| !!! | CTAAAATAAACACCATTTTT+CGG | - | chr5_1:54507702-54507721 | None:intergenic | 20.0% |
| !!! | GAAAAATGGTGTTTATTTTA+GGG | + | chr5_1:54507701-54507720 | Msa0737320:intron | 20.0% |
| !!! | GTCATAAAAGATTCTAAAAA+TGG | - | chr5_1:54507815-54507834 | None:intergenic | 20.0% |
| !! | TCTTGATTTAGAAAAGAAAA+CGG | + | chr5_1:54507835-54507854 | Msa0737320:intron | 20.0% |
| !! | TTTGGTAAAAAAACATAAGA+GGG | - | chr5_1:54507864-54507883 | None:intergenic | 20.0% |
| !! | ATTTGGTAAAAAAACATAAG+AGG | - | chr5_1:54507865-54507884 | None:intergenic | 20.0% |
| ! | ACAATGAAAAACTACTAATG+TGG | + | chr5_1:54507484-54507503 | Msa0737320:intron | 25.0% |
| !!! | CGCTTTAAATGTATGTTTTA+TGG | + | chr5_1:54507562-54507581 | Msa0737320:intron | 25.0% |
| !!! | TAGCTTTTTTTTTCTTTCTC+GGG | + | chr5_1:54507664-54507683 | Msa0737320:intron | 25.0% |
| !!! | CGAAAAATGGTGTTTATTTT+AGG | + | chr5_1:54507700-54507719 | Msa0737320:intron | 25.0% |
| ! | ATCAAAAGAACATCGTTATT+AGG | - | chr5_1:54507758-54507777 | None:intergenic | 25.0% |
| !!! | TTTTGATGAAGGGTTTTAAA+TGG | + | chr5_1:54507771-54507790 | Msa0737320:intron | 25.0% |
| ! | TTGGTAAAAAAACATAAGAG+GGG | - | chr5_1:54507863-54507882 | None:intergenic | 25.0% |
| ! | TGATACCAAATATAGACTTA+AGG | - | chr5_1:54507895-54507914 | None:intergenic | 25.0% |
| ! | TGATGTGTATGTTAGAATTA+TGG | + | chr5_1:54507915-54507934 | Msa0737320:intron | 25.0% |
| ! | TTATATATCCAACATGTTGT+AGG | - | chr5_1:54508084-54508103 | None:intergenic | 25.0% |
| !! | ATCACATCCAAAACTTATTT+TGG | + | chr5_1:54508671-54508690 | Msa0737320:CDS | 25.0% |
| ! | TCATAAACATCTACACATTA+AGG | + | chr5_1:54508805-54508824 | Msa0737320:intron | 25.0% |
| ! | CATAAACATCTACACATTAA+GGG | + | chr5_1:54508806-54508825 | Msa0737320:intron | 25.0% |
| !!! | ACTGAATTTAAATTTGTTGC+AGG | + | chr5_1:54509227-54509246 | Msa0737320:intron | 25.0% |
| ! | CTTATAGTACATGTTTACAA+AGG | + | chr5_1:54509298-54509317 | Msa0737320:CDS | 25.0% |
| ! | ACAATGAAAAACTACTAATG+TGG | + | chr5_1:54507484-54507503 | Msa0737320:intron | 25.0% |
| !!! | CGCTTTAAATGTATGTTTTA+TGG | + | chr5_1:54507562-54507581 | Msa0737320:intron | 25.0% |
| !!! | TAGCTTTTTTTTTCTTTCTC+GGG | + | chr5_1:54507664-54507683 | Msa0737320:intron | 25.0% |
| !!! | CGAAAAATGGTGTTTATTTT+AGG | + | chr5_1:54507700-54507719 | Msa0737320:intron | 25.0% |
| ! | ATCAAAAGAACATCGTTATT+AGG | - | chr5_1:54507758-54507777 | None:intergenic | 25.0% |
| !!! | TTTTGATGAAGGGTTTTAAA+TGG | + | chr5_1:54507771-54507790 | Msa0737320:intron | 25.0% |
| ! | TTGGTAAAAAAACATAAGAG+GGG | - | chr5_1:54507863-54507882 | None:intergenic | 25.0% |
| ! | TGATACCAAATATAGACTTA+AGG | - | chr5_1:54507895-54507914 | None:intergenic | 25.0% |
| ! | TGATGTGTATGTTAGAATTA+TGG | + | chr5_1:54507915-54507934 | Msa0737320:intron | 25.0% |
| ! | TTATATATCCAACATGTTGT+AGG | - | chr5_1:54508084-54508103 | None:intergenic | 25.0% |
| !! | ATCACATCCAAAACTTATTT+TGG | + | chr5_1:54508671-54508690 | Msa0737320:CDS | 25.0% |
| ! | TCATAAACATCTACACATTA+AGG | + | chr5_1:54508805-54508824 | Msa0737320:intron | 25.0% |
| ! | CATAAACATCTACACATTAA+GGG | + | chr5_1:54508806-54508825 | Msa0737320:intron | 25.0% |
| !!! | ACTGAATTTAAATTTGTTGC+AGG | + | chr5_1:54509227-54509246 | Msa0737320:intron | 25.0% |
| ! | CTTATAGTACATGTTTACAA+AGG | + | chr5_1:54509298-54509317 | Msa0737320:CDS | 25.0% |
| !! | GAAATTTCAAGTGTTGAAGA+AGG | + | chr5_1:54507343-54507362 | Msa0737320:CDS | 30.0% |
| GTAAGTTAGTGTGACTTAAT+TGG | + | chr5_1:54507427-54507446 | Msa0737320:intron | 30.0% | |
| AATGTAATTCTCTTCGTAAG+TGG | - | chr5_1:54507537-54507556 | None:intergenic | 30.0% | |
| TCTTAGACTTCGAAATTTGA+CGG | + | chr5_1:54507595-54507614 | Msa0737320:intron | 30.0% | |
| !!! | TGGTGTTTATTTTAGGGTTT+TGG | + | chr5_1:54507707-54507726 | Msa0737320:intron | 30.0% |
| !!! | GGTGTTTATTTTAGGGTTTT+GGG | + | chr5_1:54507708-54507727 | Msa0737320:intron | 30.0% |
| ! | TAACGATGTTCTTTTGATGA+AGG | + | chr5_1:54507760-54507779 | Msa0737320:intron | 30.0% |
| ! | AACGATGTTCTTTTGATGAA+GGG | + | chr5_1:54507761-54507780 | Msa0737320:intron | 30.0% |
| !!! | GAAGGGTTTTAAATGGTTTT+TGG | + | chr5_1:54507778-54507797 | Msa0737320:intron | 30.0% |
| TCTCTCCTTAAGTCTATATT+TGG | + | chr5_1:54507887-54507906 | Msa0737320:intron | 30.0% | |
| CTCATTCAAACATATCCAAA+TGG | + | chr5_1:54508040-54508059 | Msa0737320:intron | 30.0% | |
| CATGTGTATTGTAACTCTAA+AGG | - | chr5_1:54508138-54508157 | None:intergenic | 30.0% | |
| !! | TGTGGTCATTTTATTGTTGT+AGG | - | chr5_1:54508167-54508186 | None:intergenic | 30.0% |
| ! | ATTTTCTCTTGATTGTCACT+AGG | + | chr5_1:54508204-54508223 | Msa0737320:intron | 30.0% |
| ATTAAGTACCTCTTTAAGTG+AGG | - | chr5_1:54508437-54508456 | None:intergenic | 30.0% | |
| CTACATGTACAAGAAACATA+TGG | - | chr5_1:54508579-54508598 | None:intergenic | 30.0% | |
| CATATGTTTCTTGTACATGT+AGG | + | chr5_1:54508577-54508596 | Msa0737320:intron | 30.0% | |
| ! | ACTATACATTTTTGCTCAGT+TGG | + | chr5_1:54508604-54508623 | Msa0737320:CDS | 30.0% |
| ! | AACGGTTCCAAAATAAGTTT+TGG | - | chr5_1:54508681-54508700 | None:intergenic | 30.0% |
| ! | CTTAATGTTTGTCATTTCAG+CGG | + | chr5_1:54508754-54508773 | Msa0737320:CDS | 30.0% |
| CAACATTATAGTCATTCCAA+CGG | - | chr5_1:54509085-54509104 | None:intergenic | 30.0% | |
| TAAAATTGTCAATGAGAGTG+AGG | + | chr5_1:54509177-54509196 | Msa0737320:intron | 30.0% | |
| AAAATTGTCAATGAGAGTGA+GGG | + | chr5_1:54509178-54509197 | Msa0737320:intron | 30.0% | |
| TAAACATGTACTATAAGTGC+AGG | - | chr5_1:54509295-54509314 | None:intergenic | 30.0% | |
| !! | GAAATTTCAAGTGTTGAAGA+AGG | + | chr5_1:54507343-54507362 | Msa0737320:CDS | 30.0% |
| GTAAGTTAGTGTGACTTAAT+TGG | + | chr5_1:54507427-54507446 | Msa0737320:intron | 30.0% | |
| AATGTAATTCTCTTCGTAAG+TGG | - | chr5_1:54507537-54507556 | None:intergenic | 30.0% | |
| TCTTAGACTTCGAAATTTGA+CGG | + | chr5_1:54507595-54507614 | Msa0737320:intron | 30.0% | |
| !!! | TGGTGTTTATTTTAGGGTTT+TGG | + | chr5_1:54507707-54507726 | Msa0737320:intron | 30.0% |
| !!! | GGTGTTTATTTTAGGGTTTT+GGG | + | chr5_1:54507708-54507727 | Msa0737320:intron | 30.0% |
| ! | TAACGATGTTCTTTTGATGA+AGG | + | chr5_1:54507760-54507779 | Msa0737320:intron | 30.0% |
| ! | AACGATGTTCTTTTGATGAA+GGG | + | chr5_1:54507761-54507780 | Msa0737320:intron | 30.0% |
| !!! | GAAGGGTTTTAAATGGTTTT+TGG | + | chr5_1:54507778-54507797 | Msa0737320:intron | 30.0% |
| TCTCTCCTTAAGTCTATATT+TGG | + | chr5_1:54507887-54507906 | Msa0737320:intron | 30.0% | |
| CTCATTCAAACATATCCAAA+TGG | + | chr5_1:54508040-54508059 | Msa0737320:intron | 30.0% | |
| CATGTGTATTGTAACTCTAA+AGG | - | chr5_1:54508138-54508157 | None:intergenic | 30.0% | |
| !! | TGTGGTCATTTTATTGTTGT+AGG | - | chr5_1:54508167-54508186 | None:intergenic | 30.0% |
| ! | ATTTTCTCTTGATTGTCACT+AGG | + | chr5_1:54508204-54508223 | Msa0737320:intron | 30.0% |
| ATTAAGTACCTCTTTAAGTG+AGG | - | chr5_1:54508437-54508456 | None:intergenic | 30.0% | |
| CTACATGTACAAGAAACATA+TGG | - | chr5_1:54508579-54508598 | None:intergenic | 30.0% | |
| CATATGTTTCTTGTACATGT+AGG | + | chr5_1:54508577-54508596 | Msa0737320:intron | 30.0% | |
| ! | ACTATACATTTTTGCTCAGT+TGG | + | chr5_1:54508604-54508623 | Msa0737320:CDS | 30.0% |
| ! | AACGGTTCCAAAATAAGTTT+TGG | - | chr5_1:54508681-54508700 | None:intergenic | 30.0% |
| ! | CTTAATGTTTGTCATTTCAG+CGG | + | chr5_1:54508754-54508773 | Msa0737320:CDS | 30.0% |
| CAACATTATAGTCATTCCAA+CGG | - | chr5_1:54509085-54509104 | None:intergenic | 30.0% | |
| TAAAATTGTCAATGAGAGTG+AGG | + | chr5_1:54509177-54509196 | Msa0737320:intron | 30.0% | |
| AAAATTGTCAATGAGAGTGA+GGG | + | chr5_1:54509178-54509197 | Msa0737320:intron | 30.0% | |
| TAAACATGTACTATAAGTGC+AGG | - | chr5_1:54509295-54509314 | None:intergenic | 30.0% | |
| TACGATAACCTTGATACAGA+AGG | + | chr5_1:54507405-54507424 | Msa0737320:CDS | 35.0% | |
| CTAACTTACCTTCTGTATCA+AGG | - | chr5_1:54507416-54507435 | None:intergenic | 35.0% | |
| TAATTCTCTTCGTAAGTGGT+CGG | - | chr5_1:54507533-54507552 | None:intergenic | 35.0% | |
| AGACTTAAGGAGAGAGAATT+TGG | - | chr5_1:54507882-54507901 | None:intergenic | 35.0% | |
| TGAGAGATTTAGCGTATGTT+TGG | - | chr5_1:54508024-54508043 | None:intergenic | 35.0% | |
| GAACTTTCACTTGTTCCATT+TGG | - | chr5_1:54508058-54508077 | None:intergenic | 35.0% | |
| TCATCTTGAGGAAAATGACA+TGG | - | chr5_1:54508113-54508132 | None:intergenic | 35.0% | |
| ! | ACTCTAAAGGTTTCATCTTG+AGG | - | chr5_1:54508125-54508144 | None:intergenic | 35.0% |
| TAGGTGATTGCAGAAATCAT+TGG | + | chr5_1:54508223-54508242 | Msa0737320:intron | 35.0% | |
| AGGTGATTGCAGAAATCATT+GGG | + | chr5_1:54508224-54508243 | Msa0737320:intron | 35.0% | |
| AATCATTGGGACATACTTTG+TGG | + | chr5_1:54508237-54508256 | Msa0737320:CDS | 35.0% | |
| ! | TACATTTTTGCTCAGTTGGT+AGG | + | chr5_1:54508608-54508627 | Msa0737320:CDS | 35.0% |
| TGATTTCTGCAACTAAAGAC+TGG | - | chr5_1:54508721-54508740 | None:intergenic | 35.0% | |
| ATTAAGGGATATACGCTTGT+CGG | + | chr5_1:54508821-54508840 | Msa0737320:intron | 35.0% | |
| ! | ATAAGCGTTGCTTAACTTGA+TGG | + | chr5_1:54509034-54509053 | Msa0737320:intron | 35.0% |
| ATGTTGAATGTCTTCATTGC+TGG | + | chr5_1:54509099-54509118 | Msa0737320:CDS | 35.0% | |
| TGTTGAATGTCTTCATTGCT+GGG | + | chr5_1:54509100-54509119 | Msa0737320:CDS | 35.0% | |
| TACATGTTTACAAAGGACTG+TGG | + | chr5_1:54509305-54509324 | Msa0737320:CDS | 35.0% | |
| ! | TAACTCTGAAGGTGACTTTA+TGG | - | chr5_1:54509395-54509414 | None:intergenic | 35.0% |
| AGTTAGCAGATGAACAATTC+AGG | + | chr5_1:54509410-54509429 | Msa0737320:CDS | 35.0% | |
| CAATTCAGGAACATTGTTGT+AGG | + | chr5_1:54509424-54509443 | Msa0737320:CDS | 35.0% | |
| TACGATAACCTTGATACAGA+AGG | + | chr5_1:54507405-54507424 | Msa0737320:CDS | 35.0% | |
| CTAACTTACCTTCTGTATCA+AGG | - | chr5_1:54507416-54507435 | None:intergenic | 35.0% | |
| TAATTCTCTTCGTAAGTGGT+CGG | - | chr5_1:54507533-54507552 | None:intergenic | 35.0% | |
| AGACTTAAGGAGAGAGAATT+TGG | - | chr5_1:54507882-54507901 | None:intergenic | 35.0% | |
| TGAGAGATTTAGCGTATGTT+TGG | - | chr5_1:54508024-54508043 | None:intergenic | 35.0% | |
| GAACTTTCACTTGTTCCATT+TGG | - | chr5_1:54508058-54508077 | None:intergenic | 35.0% | |
| TCATCTTGAGGAAAATGACA+TGG | - | chr5_1:54508113-54508132 | None:intergenic | 35.0% | |
| ! | ACTCTAAAGGTTTCATCTTG+AGG | - | chr5_1:54508125-54508144 | None:intergenic | 35.0% |
| TAGGTGATTGCAGAAATCAT+TGG | + | chr5_1:54508223-54508242 | Msa0737320:intron | 35.0% | |
| AGGTGATTGCAGAAATCATT+GGG | + | chr5_1:54508224-54508243 | Msa0737320:intron | 35.0% | |
| AATCATTGGGACATACTTTG+TGG | + | chr5_1:54508237-54508256 | Msa0737320:CDS | 35.0% | |
| ! | TACATTTTTGCTCAGTTGGT+AGG | + | chr5_1:54508608-54508627 | Msa0737320:CDS | 35.0% |
| TGATTTCTGCAACTAAAGAC+TGG | - | chr5_1:54508721-54508740 | None:intergenic | 35.0% | |
| ATTAAGGGATATACGCTTGT+CGG | + | chr5_1:54508821-54508840 | Msa0737320:intron | 35.0% | |
| ! | ATAAGCGTTGCTTAACTTGA+TGG | + | chr5_1:54509034-54509053 | Msa0737320:intron | 35.0% |
| ATGTTGAATGTCTTCATTGC+TGG | + | chr5_1:54509099-54509118 | Msa0737320:CDS | 35.0% | |
| TGTTGAATGTCTTCATTGCT+GGG | + | chr5_1:54509100-54509119 | Msa0737320:CDS | 35.0% | |
| TACATGTTTACAAAGGACTG+TGG | + | chr5_1:54509305-54509324 | Msa0737320:CDS | 35.0% | |
| ! | TAACTCTGAAGGTGACTTTA+TGG | - | chr5_1:54509395-54509414 | None:intergenic | 35.0% |
| AGTTAGCAGATGAACAATTC+AGG | + | chr5_1:54509410-54509429 | Msa0737320:CDS | 35.0% | |
| CAATTCAGGAACATTGTTGT+AGG | + | chr5_1:54509424-54509443 | Msa0737320:CDS | 35.0% | |
| AACAAAGTTGCATGACGTGA+GGG | - | chr5_1:54507372-54507391 | None:intergenic | 40.0% | |
| ATCCGACTAACACCGAAAAA+TGG | + | chr5_1:54507687-54507706 | Msa0737320:intron | 40.0% | |
| !!! | CACCATTTTTCGGTGTTAGT+CGG | - | chr5_1:54507692-54507711 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGGTATATGATGT+TGG | + | chr5_1:54507721-54507740 | Msa0737320:intron | 40.0% |
| ACATACTTTGTGGTGTTTGC+TGG | + | chr5_1:54508247-54508266 | Msa0737320:CDS | 40.0% | |
| ! | ATGGTCATGTGTTACTCTGT+TGG | + | chr5_1:54508349-54508368 | Msa0737320:CDS | 40.0% |
| TACTCTGTTGGTCATATCTC+TGG | + | chr5_1:54508361-54508380 | Msa0737320:CDS | 40.0% | |
| ! | ATGAACCCAGCAAGAAGTAT+TGG | + | chr5_1:54509268-54509287 | Msa0737320:CDS | 40.0% |
| TGTTCATCTGCTAACTCTGA+AGG | - | chr5_1:54509406-54509425 | None:intergenic | 40.0% | |
| AACAAAGTTGCATGACGTGA+GGG | - | chr5_1:54507372-54507391 | None:intergenic | 40.0% | |
| ATCCGACTAACACCGAAAAA+TGG | + | chr5_1:54507687-54507706 | Msa0737320:intron | 40.0% | |
| !!! | CACCATTTTTCGGTGTTAGT+CGG | - | chr5_1:54507692-54507711 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGGTATATGATGT+TGG | + | chr5_1:54507721-54507740 | Msa0737320:intron | 40.0% |
| ACATACTTTGTGGTGTTTGC+TGG | + | chr5_1:54508247-54508266 | Msa0737320:CDS | 40.0% | |
| ! | ATGGTCATGTGTTACTCTGT+TGG | + | chr5_1:54508349-54508368 | Msa0737320:CDS | 40.0% |
| TACTCTGTTGGTCATATCTC+TGG | + | chr5_1:54508361-54508380 | Msa0737320:CDS | 40.0% | |
| ! | ATGAACCCAGCAAGAAGTAT+TGG | + | chr5_1:54509268-54509287 | Msa0737320:CDS | 40.0% |
| TGTTCATCTGCTAACTCTGA+AGG | - | chr5_1:54509406-54509425 | None:intergenic | 40.0% | |
| CAACAAAGTTGCATGACGTG+AGG | - | chr5_1:54507373-54507392 | None:intergenic | 45.0% | |
| GGAGATGATGCTCTGATTGA+AGG | + | chr5_1:54507505-54507524 | Msa0737320:intron | 45.0% | |
| AGTTCGTGCCTACAACATGT+TGG | + | chr5_1:54508073-54508092 | Msa0737320:intron | 45.0% | |
| ! | TTTGTGGTGTTTGCTGGATG+TGG | + | chr5_1:54508253-54508272 | Msa0737320:CDS | 45.0% |
| GTAGCGGTGGATAAGATCTA+TGG | + | chr5_1:54508280-54508299 | Msa0737320:CDS | 45.0% | |
| ! | TATGGCTCTGTGACATTTCC+AGG | + | chr5_1:54508298-54508317 | Msa0737320:CDS | 45.0% |
| ! | ATGGCTCTGTGACATTTCCA+GGG | + | chr5_1:54508299-54508318 | Msa0737320:CDS | 45.0% |
| ! | TTCCAGGGGTATGTATCACT+TGG | + | chr5_1:54508314-54508333 | Msa0737320:CDS | 45.0% |
| ! | TCCAGGGGTATGTATCACTT+GGG | + | chr5_1:54508315-54508334 | Msa0737320:CDS | 45.0% |
| CACTTGGGGGCTTATTGTAA+TGG | + | chr5_1:54508330-54508349 | Msa0737320:CDS | 45.0% | |
| TCTGTTGGTCATATCTCTGG+AGG | + | chr5_1:54508364-54508383 | Msa0737320:CDS | 45.0% | |
| TCCAAGTGATGGTAACAGCA+GGG | - | chr5_1:54508399-54508418 | None:intergenic | 45.0% | |
| ACGAAAGATGGTCCAAGTGA+TGG | - | chr5_1:54508410-54508429 | None:intergenic | 45.0% | |
| TCACTTGGACCATCTTTCGT+AGG | + | chr5_1:54508410-54508429 | Msa0737320:CDS | 45.0% | |
| AAGTGAGGTCCTACGAAAGA+TGG | - | chr5_1:54508422-54508441 | None:intergenic | 45.0% | |
| TCGTAGGACCTCACTTAAAG+AGG | + | chr5_1:54508426-54508445 | Msa0737320:CDS | 45.0% | |
| !!! | TATTTTGGAACCGTTCCCGT+TGG | + | chr5_1:54508686-54508705 | Msa0737320:CDS | 45.0% |
| ! | AGACTGGCCATTTGATCCAA+CGG | - | chr5_1:54508705-54508724 | None:intergenic | 45.0% |
| CAATGAGAGTGAGGGACATA+CGG | + | chr5_1:54509186-54509205 | Msa0737320:intron | 45.0% | |
| ! | ATTTGTTGCAGGCCTGTATC+AGG | + | chr5_1:54509238-54509257 | Msa0737320:intron | 45.0% |
| TTTGTTGCAGGCCTGTATCA+GGG | + | chr5_1:54509239-54509258 | Msa0737320:intron | 45.0% | |
| TTCATAGATCCCCCTGATAC+AGG | - | chr5_1:54509253-54509272 | None:intergenic | 45.0% | |
| CAGGACCAATACTTCTTGCT+GGG | - | chr5_1:54509276-54509295 | None:intergenic | 45.0% | |
| CAAAGGACTGTGGATATACG+TGG | + | chr5_1:54509315-54509334 | Msa0737320:CDS | 45.0% | |
| ! | TACGTGGTTGGTCCAATTGT+TGG | + | chr5_1:54509331-54509350 | Msa0737320:CDS | 45.0% |
| CCAGCTATAGCTCCAACAAT+TGG | - | chr5_1:54509346-54509365 | None:intergenic | 45.0% | |
| CCAATTGTTGGAGCTATAGC+TGG | + | chr5_1:54509343-54509362 | Msa0737320:CDS | 45.0% | |
| CAACAAAGTTGCATGACGTG+AGG | - | chr5_1:54507373-54507392 | None:intergenic | 45.0% | |
| GGAGATGATGCTCTGATTGA+AGG | + | chr5_1:54507505-54507524 | Msa0737320:intron | 45.0% | |
| AGTTCGTGCCTACAACATGT+TGG | + | chr5_1:54508073-54508092 | Msa0737320:intron | 45.0% | |
| ! | TTTGTGGTGTTTGCTGGATG+TGG | + | chr5_1:54508253-54508272 | Msa0737320:CDS | 45.0% |
| GTAGCGGTGGATAAGATCTA+TGG | + | chr5_1:54508280-54508299 | Msa0737320:CDS | 45.0% | |
| ! | TATGGCTCTGTGACATTTCC+AGG | + | chr5_1:54508298-54508317 | Msa0737320:CDS | 45.0% |
| ! | ATGGCTCTGTGACATTTCCA+GGG | + | chr5_1:54508299-54508318 | Msa0737320:CDS | 45.0% |
| ! | TTCCAGGGGTATGTATCACT+TGG | + | chr5_1:54508314-54508333 | Msa0737320:CDS | 45.0% |
| ! | TCCAGGGGTATGTATCACTT+GGG | + | chr5_1:54508315-54508334 | Msa0737320:CDS | 45.0% |
| CACTTGGGGGCTTATTGTAA+TGG | + | chr5_1:54508330-54508349 | Msa0737320:CDS | 45.0% | |
| TCTGTTGGTCATATCTCTGG+AGG | + | chr5_1:54508364-54508383 | Msa0737320:CDS | 45.0% | |
| TCCAAGTGATGGTAACAGCA+GGG | - | chr5_1:54508399-54508418 | None:intergenic | 45.0% | |
| ACGAAAGATGGTCCAAGTGA+TGG | - | chr5_1:54508410-54508429 | None:intergenic | 45.0% | |
| TCACTTGGACCATCTTTCGT+AGG | + | chr5_1:54508410-54508429 | Msa0737320:CDS | 45.0% | |
| AAGTGAGGTCCTACGAAAGA+TGG | - | chr5_1:54508422-54508441 | None:intergenic | 45.0% | |
| TCGTAGGACCTCACTTAAAG+AGG | + | chr5_1:54508426-54508445 | Msa0737320:CDS | 45.0% | |
| !!! | TATTTTGGAACCGTTCCCGT+TGG | + | chr5_1:54508686-54508705 | Msa0737320:CDS | 45.0% |
| ! | AGACTGGCCATTTGATCCAA+CGG | - | chr5_1:54508705-54508724 | None:intergenic | 45.0% |
| CAATGAGAGTGAGGGACATA+CGG | + | chr5_1:54509186-54509205 | Msa0737320:intron | 45.0% | |
| ! | ATTTGTTGCAGGCCTGTATC+AGG | + | chr5_1:54509238-54509257 | Msa0737320:intron | 45.0% |
| TTTGTTGCAGGCCTGTATCA+GGG | + | chr5_1:54509239-54509258 | Msa0737320:intron | 45.0% | |
| TTCATAGATCCCCCTGATAC+AGG | - | chr5_1:54509253-54509272 | None:intergenic | 45.0% | |
| CAGGACCAATACTTCTTGCT+GGG | - | chr5_1:54509276-54509295 | None:intergenic | 45.0% | |
| CAAAGGACTGTGGATATACG+TGG | + | chr5_1:54509315-54509334 | Msa0737320:CDS | 45.0% | |
| ! | TACGTGGTTGGTCCAATTGT+TGG | + | chr5_1:54509331-54509350 | Msa0737320:CDS | 45.0% |
| CCAGCTATAGCTCCAACAAT+TGG | - | chr5_1:54509346-54509365 | None:intergenic | 45.0% | |
| CCAATTGTTGGAGCTATAGC+TGG | + | chr5_1:54509343-54509362 | Msa0737320:CDS | 45.0% | |
| ! | TGCTGGATGTGGTTCTGTAG+CGG | + | chr5_1:54508264-54508283 | Msa0737320:CDS | 50.0% |
| ! | TGGCTCTGTGACATTTCCAG+GGG | + | chr5_1:54508300-54508319 | Msa0737320:CDS | 50.0% |
| ! | CCAGGGGTATGTATCACTTG+GGG | + | chr5_1:54508316-54508335 | Msa0737320:CDS | 50.0% |
| ! | CAGGGGTATGTATCACTTGG+GGG | + | chr5_1:54508317-54508336 | Msa0737320:CDS | 50.0% |
| ACCCTGCTGTTACCATCACT+TGG | + | chr5_1:54508395-54508414 | Msa0737320:CDS | 50.0% | |
| GTCCAAGTGATGGTAACAGC+AGG | - | chr5_1:54508400-54508419 | None:intergenic | 50.0% | |
| GTAGGATCAACGCTTGCAAG+TGG | + | chr5_1:54508626-54508645 | Msa0737320:CDS | 50.0% | |
| ACCGTTCCCGTTGGATCAAA+TGG | + | chr5_1:54508695-54508714 | Msa0737320:CDS | 50.0% | |
| GCCATTTGATCCAACGGGAA+CGG | - | chr5_1:54508699-54508718 | None:intergenic | 50.0% | |
| ! | GACTGGCCATTTGATCCAAC+GGG | - | chr5_1:54508704-54508723 | None:intergenic | 50.0% |
| GGTTTCAACCGACGAAAGAG+CGG | + | chr5_1:54508775-54508794 | Msa0737320:CDS | 50.0% | |
| AGTGCATACCGCTCTTTCGT+CGG | - | chr5_1:54508786-54508805 | None:intergenic | 50.0% | |
| ! | GCGTTGCTTAACTTGATGGC+AGG | + | chr5_1:54509038-54509057 | Msa0737320:intron | 50.0% |
| TGGCAGGTGAATGATTTCGC+CGG | + | chr5_1:54509054-54509073 | Msa0737320:intron | 50.0% | |
| AGTCATTCCAACGGCAACAC+CGG | - | chr5_1:54509076-54509095 | None:intergenic | 50.0% | |
| TTGTTGCAGGCCTGTATCAG+GGG | + | chr5_1:54509240-54509259 | Msa0737320:intron | 50.0% | |
| GCAGGACCAATACTTCTTGC+TGG | - | chr5_1:54509277-54509296 | None:intergenic | 50.0% | |
| GGACTGTGGATATACGTGGT+TGG | + | chr5_1:54509319-54509338 | Msa0737320:CDS | 50.0% | |
| ! | TGCTGGATGTGGTTCTGTAG+CGG | + | chr5_1:54508264-54508283 | Msa0737320:CDS | 50.0% |
| ! | TGGCTCTGTGACATTTCCAG+GGG | + | chr5_1:54508300-54508319 | Msa0737320:CDS | 50.0% |
| ! | CCAGGGGTATGTATCACTTG+GGG | + | chr5_1:54508316-54508335 | Msa0737320:CDS | 50.0% |
| ! | CAGGGGTATGTATCACTTGG+GGG | + | chr5_1:54508317-54508336 | Msa0737320:CDS | 50.0% |
| ACCCTGCTGTTACCATCACT+TGG | + | chr5_1:54508395-54508414 | Msa0737320:CDS | 50.0% | |
| GTCCAAGTGATGGTAACAGC+AGG | - | chr5_1:54508400-54508419 | None:intergenic | 50.0% | |
| GTAGGATCAACGCTTGCAAG+TGG | + | chr5_1:54508626-54508645 | Msa0737320:CDS | 50.0% | |
| ACCGTTCCCGTTGGATCAAA+TGG | + | chr5_1:54508695-54508714 | Msa0737320:CDS | 50.0% | |
| GCCATTTGATCCAACGGGAA+CGG | - | chr5_1:54508699-54508718 | None:intergenic | 50.0% | |
| ! | GACTGGCCATTTGATCCAAC+GGG | - | chr5_1:54508704-54508723 | None:intergenic | 50.0% |
| GGTTTCAACCGACGAAAGAG+CGG | + | chr5_1:54508775-54508794 | Msa0737320:CDS | 50.0% | |
| AGTGCATACCGCTCTTTCGT+CGG | - | chr5_1:54508786-54508805 | None:intergenic | 50.0% | |
| ! | GCGTTGCTTAACTTGATGGC+AGG | + | chr5_1:54509038-54509057 | Msa0737320:intron | 50.0% |
| TGGCAGGTGAATGATTTCGC+CGG | + | chr5_1:54509054-54509073 | Msa0737320:intron | 50.0% | |
| AGTCATTCCAACGGCAACAC+CGG | - | chr5_1:54509076-54509095 | None:intergenic | 50.0% | |
| TTGTTGCAGGCCTGTATCAG+GGG | + | chr5_1:54509240-54509259 | Msa0737320:intron | 50.0% | |
| GCAGGACCAATACTTCTTGC+TGG | - | chr5_1:54509277-54509296 | None:intergenic | 50.0% | |
| GGACTGTGGATATACGTGGT+TGG | + | chr5_1:54509319-54509338 | Msa0737320:CDS | 50.0% | |
| ! | TGGATGTGGTTCTGTAGCGG+TGG | + | chr5_1:54508267-54508286 | Msa0737320:CDS | 55.0% |
| CCCCAAGTGATACATACCCC+TGG | - | chr5_1:54508319-54508338 | None:intergenic | 55.0% | |
| TGTTGCAGGCCTGTATCAGG+GGG | + | chr5_1:54509241-54509260 | Msa0737320:intron | 55.0% | |
| ! | TGGATGTGGTTCTGTAGCGG+TGG | + | chr5_1:54508267-54508286 | Msa0737320:CDS | 55.0% |
| CCCCAAGTGATACATACCCC+TGG | - | chr5_1:54508319-54508338 | None:intergenic | 55.0% | |
| TGTTGCAGGCCTGTATCAGG+GGG | + | chr5_1:54509241-54509260 | Msa0737320:intron | 55.0% | |
| !! | GATTTCGCCGGTGTTGCCGT+TGG | + | chr5_1:54509066-54509085 | Msa0737320:CDS | 60.0% |
| !! | GATTTCGCCGGTGTTGCCGT+TGG | + | chr5_1:54509066-54509085 | Msa0737320:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54507310 | 54509450 | 54507310 | ID=Msa0737320;Name=Msa0737320 |
| chr5_1 | mRNA | 54507310 | 54509450 | 54507310 | ID=Msa0737320-mRNA-1;Parent=Msa0737320;Name=Msa0737320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.75|0.4|1|1|1|5|0|266 |
| chr5_1 | exon | 54507310 | 54507426 | 54507310 | ID=Msa0737320-mRNA-1:exon:15292;Parent=Msa0737320-mRNA-1 |
| chr5_1 | exon | 54508226 | 54508447 | 54508226 | ID=Msa0737320-mRNA-1:exon:15293;Parent=Msa0737320-mRNA-1 |
| chr5_1 | exon | 54508599 | 54508796 | 54508599 | ID=Msa0737320-mRNA-1:exon:15294;Parent=Msa0737320-mRNA-1 |
| chr5_1 | exon | 54509060 | 54509121 | 54509060 | ID=Msa0737320-mRNA-1:exon:15295;Parent=Msa0737320-mRNA-1 |
| chr5_1 | exon | 54509249 | 54509450 | 54509249 | ID=Msa0737320-mRNA-1:exon:15296;Parent=Msa0737320-mRNA-1 |
| chr5_1 | CDS | 54507310 | 54507426 | 54507310 | ID=Msa0737320-mRNA-1:cds;Parent=Msa0737320-mRNA-1 |
| chr5_1 | CDS | 54508226 | 54508447 | 54508226 | ID=Msa0737320-mRNA-1:cds;Parent=Msa0737320-mRNA-1 |
| chr5_1 | CDS | 54508599 | 54508796 | 54508599 | ID=Msa0737320-mRNA-1:cds;Parent=Msa0737320-mRNA-1 |
| chr5_1 | CDS | 54509060 | 54509121 | 54509060 | ID=Msa0737320-mRNA-1:cds;Parent=Msa0737320-mRNA-1 |
| chr5_1 | CDS | 54509249 | 54509450 | 54509249 | ID=Msa0737320-mRNA-1:cds;Parent=Msa0737320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
