Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780160 | sp|Q9FLP0|MA651_ARATH | 78.268 | 589 | 120 | 6 | 1 | 583 | 1 | 587 | 0.0 | 907 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780160 | G7K8P9 | 99.142 | 583 | 4 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743120 | Msa0780160 | 0.971624 | 1.855275e-133 | -8.615850e-47 |
| Msa0780160 | Msa0863270 | 0.814294 | 1.657494e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780160 | MtrunA17_Chr5g0444881 | 99.142 | 583 | 4 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1180 |
| Msa0780160 | MtrunA17_Chr1g0164981 | 49.066 | 589 | 273 | 8 | 15 | 578 | 16 | 602 | 0.0 | 540 |
| Msa0780160 | MtrunA17_Chr8g0354131 | 50.000 | 566 | 266 | 6 | 15 | 574 | 14 | 568 | 0.0 | 535 |
| Msa0780160 | MtrunA17_Chr1g0188201 | 53.042 | 526 | 237 | 5 | 12 | 536 | 12 | 528 | 2.07e-177 | 519 |
| Msa0780160 | MtrunA17_Chr6g0476051 | 52.124 | 518 | 229 | 8 | 12 | 524 | 13 | 516 | 1.91e-174 | 511 |
| Msa0780160 | MtrunA17_Chr3g0122591 | 44.874 | 595 | 296 | 8 | 13 | 583 | 17 | 603 | 5.06e-167 | 488 |
| Msa0780160 | MtrunA17_Chr7g0245851 | 43.321 | 524 | 284 | 5 | 13 | 536 | 366 | 876 | 4.37e-129 | 403 |
| Msa0780160 | MtrunA17_Chr8g0345241 | 44.444 | 513 | 241 | 9 | 12 | 508 | 12 | 496 | 1.02e-126 | 381 |
| Msa0780160 | MtrunA17_Chr5g0410361 | 52.632 | 76 | 34 | 1 | 247 | 322 | 20 | 93 | 4.48e-16 | 73.9 |
| Msa0780160 | MtrunA17_Chr4g0039561 | 56.140 | 57 | 25 | 0 | 21 | 77 | 141 | 197 | 6.31e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780160 | AT5G55230.3 | 78.268 | 589 | 120 | 6 | 1 | 583 | 1 | 587 | 0.0 | 907 |
| Msa0780160 | AT5G55230.1 | 78.268 | 589 | 120 | 6 | 1 | 583 | 1 | 587 | 0.0 | 907 |
| Msa0780160 | AT5G55230.2 | 74.595 | 618 | 120 | 7 | 1 | 583 | 1 | 616 | 0.0 | 891 |
| Msa0780160 | AT4G26760.1 | 75.514 | 584 | 136 | 3 | 1 | 583 | 1 | 578 | 0.0 | 885 |
| Msa0780160 | AT1G14690.1 | 48.116 | 584 | 280 | 9 | 15 | 578 | 17 | 597 | 3.79e-178 | 517 |
| Msa0780160 | AT1G14690.2 | 48.116 | 584 | 280 | 9 | 15 | 578 | 17 | 597 | 3.79e-178 | 517 |
| Msa0780160 | AT2G01910.1 | 47.483 | 596 | 279 | 9 | 15 | 583 | 17 | 605 | 2.85e-175 | 510 |
| Msa0780160 | AT2G38720.1 | 47.740 | 553 | 272 | 6 | 19 | 568 | 12 | 550 | 1.28e-169 | 493 |
| Msa0780160 | AT2G01910.2 | 47.285 | 571 | 267 | 9 | 40 | 583 | 1 | 564 | 2.24e-163 | 478 |
| Msa0780160 | AT1G27920.1 | 47.228 | 523 | 266 | 6 | 13 | 531 | 17 | 533 | 3.78e-160 | 469 |
| Msa0780160 | AT5G51600.1 | 50.189 | 530 | 253 | 6 | 13 | 538 | 13 | 535 | 5.49e-160 | 474 |
| Msa0780160 | AT3G60840.1 | 42.959 | 561 | 302 | 6 | 13 | 570 | 13 | 558 | 4.44e-144 | 432 |
| Msa0780160 | AT5G62250.2 | 44.338 | 521 | 272 | 8 | 13 | 518 | 7 | 524 | 4.87e-125 | 379 |
| Msa0780160 | AT5G62250.1 | 44.338 | 521 | 272 | 8 | 13 | 518 | 7 | 524 | 4.87e-125 | 379 |
| Msa0780160 | AT1G27920.2 | 47.970 | 394 | 200 | 3 | 13 | 403 | 17 | 408 | 2.75e-120 | 362 |
Find 153 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTCTTGTAGGAAATA+TGG | 0.154851 | 5_2:+61875228 | Msa0780160:intron |
| AGTTTCATTGCTTATGCTTT+TGG | 0.186565 | 5_2:-61876077 | None:intergenic |
| GATGCTGCTTCCCACGTTTC+TGG | 0.194759 | 5_2:+61877969 | Msa0780160:CDS |
| GATATTCTTCAAACTTCTTC+AGG | 0.209572 | 5_2:-61875775 | None:intergenic |
| ATTATGGCATTGATTGATTC+TGG | 0.215257 | 5_2:+61876706 | Msa0780160:CDS |
| GAAGCTCAAAACCCTCTTAT+TGG | 0.235885 | 5_2:+61875095 | Msa0780160:CDS |
| CTCTTCCCATGCACGTGTTT+TGG | 0.242051 | 5_2:-61877440 | None:intergenic |
| CCATATCAAAAGATGGAAAA+AGG | 0.249870 | 5_2:+61877895 | Msa0780160:CDS |
| TTAATTGAGAAGCTAATTCT+TGG | 0.260019 | 5_2:-61876336 | None:intergenic |
| ATAGGATCAGAAGAAATTTC+AGG | 0.264115 | 5_2:+61877710 | Msa0780160:intron |
| TCGCTTAATGCTCATCAAAA+TGG | 0.292941 | 5_2:+61877864 | Msa0780160:CDS |
| TCGGCTTAAAGCTTCTTCTT+TGG | 0.293161 | 5_2:-61876782 | None:intergenic |
| CATTGAACCAACTGAATTAC+TGG | 0.310358 | 5_2:+61876732 | Msa0780160:CDS |
| TCGCAGCCTGATAATACTTC+TGG | 0.311689 | 5_2:+61875575 | Msa0780160:intron |
| AAAATATGTGGAGAGATAAC+TGG | 0.337379 | 5_2:+61875704 | Msa0780160:CDS |
| CTTGGCGAAAAGGGCTTTGC+TGG | 0.338989 | 5_2:+61875419 | Msa0780160:CDS |
| GCTAACTGGCCTAGCAGGGC+TGG | 0.343030 | 5_2:-61877775 | None:intergenic |
| TTATTTCTTGTAGGAAATAT+GGG | 0.351927 | 5_2:+61875229 | Msa0780160:intron |
| TTGGAAACAAAGCTCTCATT+AGG | 0.354992 | 5_2:-61878015 | None:intergenic |
| TTTAAGCCGAAAAGATATAT+TGG | 0.359716 | 5_2:+61876795 | Msa0780160:CDS |
| CAACTGCAGGTACATCATTA+AGG | 0.363873 | 5_2:-61875736 | None:intergenic |
| GCACACCAGTAGAATCATTC+AGG | 0.370135 | 5_2:-61876051 | None:intergenic |
| ATAGTTCCAGAAGTATTATC+AGG | 0.372534 | 5_2:-61875581 | None:intergenic |
| TATTCCTGGTGCCCTTGCTC+TGG | 0.378206 | 5_2:+61876453 | Msa0780160:CDS |
| CTTCAAACTTCTTCAGGGTC+AGG | 0.381765 | 5_2:-61875769 | None:intergenic |
| AGAGAATGGTTACCTGGGTT+AGG | 0.384538 | 5_2:-61873890 | None:intergenic |
| GTTGATGAAGTCACTATTCC+TGG | 0.387802 | 5_2:+61876439 | Msa0780160:CDS |
| AATTGATCTGTGGAATCTAA+TGG | 0.391031 | 5_2:+61876357 | Msa0780160:CDS |
| ACATTGTGGTCACAACCAAT+TGG | 0.393001 | 5_2:-61878267 | None:intergenic |
| CCCTTTAGTATGAAAATATA+CGG | 0.394667 | 5_2:+61878195 | Msa0780160:three_prime_UTR |
| ACCTTCTTAGCAGCGCTAAC+TGG | 0.396718 | 5_2:-61877789 | None:intergenic |
| TCAAACAGTTTCCTTTCCTC+TGG | 0.399403 | 5_2:-61876388 | None:intergenic |
| GTAGGTGGCCCTCGTGCTAA+TGG | 0.403729 | 5_2:+61877810 | Msa0780160:CDS |
| TTCATACTAAAGGGCTTCAA+TGG | 0.409702 | 5_2:-61878186 | None:intergenic |
| GTGTGCAGGCTAGGTTGCTC+TGG | 0.414515 | 5_2:+61875053 | Msa0780160:intron |
| ATACTGGTAAATAAAATTCC+TGG | 0.418500 | 5_2:+61877263 | Msa0780160:CDS |
| ACAAAAGGAAGAAAGGATAA+AGG | 0.418529 | 5_2:+61875652 | Msa0780160:CDS |
| CTAACTGGCCTAGCAGGGCT+GGG | 0.418614 | 5_2:-61877774 | None:intergenic |
| TCATCCTGCTTGCTTTAAGC+TGG | 0.421882 | 5_2:-61876594 | None:intergenic |
| AATCGTAGCTTCTTCCCAAT+TGG | 0.422482 | 5_2:+61878252 | Msa0780160:three_prime_UTR |
| AGCTCTCATTAGGGTGATGT+TGG | 0.426206 | 5_2:-61878005 | None:intergenic |
| GCAGCGCTAACTGGCCTAGC+AGG | 0.426792 | 5_2:-61877780 | None:intergenic |
| AACAGAAGCTGAGATGTTAC+AGG | 0.432352 | 5_2:-61876419 | None:intergenic |
| ACATAATTCACAGGAGCAAC+TGG | 0.432791 | 5_2:-61877930 | None:intergenic |
| TCTATCAGCTCTTGGCGAAA+AGG | 0.434662 | 5_2:+61875409 | Msa0780160:CDS |
| TCTACACTTCTATCAGCTCT+TGG | 0.437972 | 5_2:+61875401 | Msa0780160:CDS |
| AGCAGAGAAAGCTCGGATAC+TGG | 0.438832 | 5_2:+61877247 | Msa0780160:CDS |
| CTATCAGCTCTTGGCGAAAA+GGG | 0.441089 | 5_2:+61875410 | Msa0780160:CDS |
| ATTGGGAAGAAGCTACGATT+TGG | 0.443657 | 5_2:-61878249 | None:intergenic |
| GAGAATGGTTACCTGGGTTA+GGG | 0.444225 | 5_2:-61873889 | None:intergenic |
| GCTGGCTTGAGGACTATAAT+CGG | 0.444875 | 5_2:+61876857 | Msa0780160:CDS |
| GCCAGTTAGCGCTGCTAAGA+AGG | 0.445166 | 5_2:+61877788 | Msa0780160:CDS |
| ATATTCTTCAAACTTCTTCA+GGG | 0.448106 | 5_2:-61875774 | None:intergenic |
| TCAGTTAGAGCAGGAGTGCT+TGG | 0.449739 | 5_2:+61875295 | Msa0780160:CDS |
| TGCCATGCTTAGGCATGAAC+GGG | 0.453195 | 5_2:+61877522 | Msa0780160:CDS |
| TCATTAGGGTGATGTTGGGA+TGG | 0.454940 | 5_2:-61878000 | None:intergenic |
| TGCTGCAAGAGAGAAGATTA+TGG | 0.455462 | 5_2:+61876690 | Msa0780160:CDS |
| TATTGGACAAGGTTGAGAAA+TGG | 0.465695 | 5_2:+61876812 | Msa0780160:CDS |
| GCTTTGTTTGGCAGAGTGAC+AGG | 0.467364 | 5_2:+61875933 | Msa0780160:intron |
| AACTGAATTACTGGCTGACA+TGG | 0.467925 | 5_2:+61876741 | Msa0780160:CDS |
| TGGTGAAAGTGACGAGGAAC+GGG | 0.468470 | 5_2:+61875259 | Msa0780160:CDS |
| TGAGCTTCAAGAACTTCAAA+AGG | 0.471280 | 5_2:+61875802 | Msa0780160:CDS |
| GCAGAGTGACAGGTTGCAAA+AGG | 0.476336 | 5_2:+61875943 | Msa0780160:intron |
| CATGATCTATGTGCTGTCCT+TGG | 0.481657 | 5_2:+61875989 | Msa0780160:CDS |
| TGCCATAGCTGTTCAAGTGC+TGG | 0.483432 | 5_2:-61875629 | None:intergenic |
| CATTGTGGTCACAACCAATT+GGG | 0.486443 | 5_2:-61878266 | None:intergenic |
| TCAAGAACTTCAAAAGGAAA+AGG | 0.487196 | 5_2:+61875808 | Msa0780160:CDS |
| CATTAGGGTGATGTTGGGAT+GGG | 0.488018 | 5_2:-61877999 | None:intergenic |
| CTTGTAGGAAATATGGGATG+AGG | 0.489586 | 5_2:+61875235 | Msa0780160:intron |
| AACAGTTTCCTTTCCTCTGG+AGG | 0.490807 | 5_2:-61876385 | None:intergenic |
| TGTATTAGTAAAGCTCCAAA+TGG | 0.491268 | 5_2:-61878151 | None:intergenic |
| GATATGTCATTCACATATGA+TGG | 0.497706 | 5_2:+61877469 | Msa0780160:CDS |
| TGCTCTGGATCTGATTGAGC+AGG | 0.502895 | 5_2:+61876468 | Msa0780160:CDS |
| TAGAATCATTCAGGCTTGGA+TGG | 0.504167 | 5_2:-61876042 | None:intergenic |
| TGCTCATATAGAAATAGATT+CGG | 0.505688 | 5_2:+61876666 | Msa0780160:CDS |
| GAGCTTTCTCTGCTCGCTTG+AGG | 0.510478 | 5_2:-61877238 | None:intergenic |
| ATGCAAAACAGGATGACAAC+AGG | 0.511644 | 5_2:+61877186 | Msa0780160:intron |
| TGGAAACAAAGCTCTCATTA+GGG | 0.511967 | 5_2:-61878014 | None:intergenic |
| AGATCCAGAGCAAGGGCACC+AGG | 0.513680 | 5_2:-61876457 | None:intergenic |
| GACATGGCCACATAATTCAC+AGG | 0.513896 | 5_2:-61877939 | None:intergenic |
| TATGGCAACAAAAGGAAGAA+AGG | 0.517548 | 5_2:+61875645 | Msa0780160:CDS |
| TCTATGTGCTGTCCTTGGTA+TGG | 0.521422 | 5_2:+61875994 | Msa0780160:CDS |
| TGAACAGCTATGGCAACAAA+AGG | 0.521810 | 5_2:+61875637 | Msa0780160:CDS |
| CTACAAAGATGAATTGAGGT+TGG | 0.523993 | 5_2:-61878034 | None:intergenic |
| TGCAGCTTTGGTTGATACAT+TGG | 0.524917 | 5_2:+61877414 | Msa0780160:intron |
| TAATACTTCTGGAACTATCA+AGG | 0.525873 | 5_2:+61875586 | Msa0780160:CDS |
| TGGTTGCCAAAACACGTGCA+TGG | 0.528372 | 5_2:+61877434 | Msa0780160:CDS |
| CCAAGCCTGAATGATTCTAC+TGG | 0.528482 | 5_2:+61876046 | Msa0780160:CDS |
| AGCAGGTCCATATCAAAAGA+TGG | 0.528623 | 5_2:+61877888 | Msa0780160:CDS |
| GATGCTTCTTCAGTTAGAGC+AGG | 0.532796 | 5_2:+61875286 | Msa0780160:CDS |
| GCTCTCATTAGGGTGATGTT+GGG | 0.532878 | 5_2:-61878004 | None:intergenic |
| ATGCCATGCTTAGGCATGAA+CGG | 0.537364 | 5_2:+61877521 | Msa0780160:CDS |
| TTGGTGAAAGTGACGAGGAA+CGG | 0.538594 | 5_2:+61875258 | Msa0780160:CDS |
| CATGTGTTCTCTCCAATAAG+AGG | 0.538884 | 5_2:-61875107 | None:intergenic |
| GCTTAAAGCAAGCAGGATGA+AGG | 0.542110 | 5_2:+61876597 | Msa0780160:CDS |
| TTGAACATGCTGCAAAGTCA+AGG | 0.542624 | 5_2:+61875336 | Msa0780160:CDS |
| CTTCTCAATTAATTGATCTG+TGG | 0.545500 | 5_2:+61876347 | Msa0780160:CDS |
| CCAGTAGAATCATTCAGGCT+TGG | 0.546540 | 5_2:-61876046 | None:intergenic |
| GAACTGTTCTGAGCTGTGTA+TGG | 0.547260 | 5_2:+61878120 | Msa0780160:three_prime_UTR |
| GGTTGCCAAAACACGTGCAT+GGG | 0.547396 | 5_2:+61877435 | Msa0780160:CDS |
| TTCCCGTTCATGCCTAAGCA+TGG | 0.548978 | 5_2:-61877524 | None:intergenic |
| TCAAGCGAGCAGAGAAAGCT+CGG | 0.552310 | 5_2:+61877240 | Msa0780160:CDS |
| TTCCTTGTTGAAGAAGCTGC+AGG | 0.552930 | 5_2:+61875133 | Msa0780160:CDS |
| CTGAGATGTTACAGGTAACA+TGG | 0.553383 | 5_2:-61876411 | None:intergenic |
| GTTCAAAACCCAGCCCTGCT+AGG | 0.553563 | 5_2:+61877766 | Msa0780160:CDS |
| GGAGCTTTACTAATACATGT+TGG | 0.553604 | 5_2:+61878157 | Msa0780160:three_prime_UTR |
| AGGTTGCTCTGGAACTTCAA+TGG | 0.556254 | 5_2:+61875064 | Msa0780160:exon |
| CACCAGCACTTGAACAGCTA+TGG | 0.556593 | 5_2:+61875627 | Msa0780160:CDS |
| CAGCTTGTGAAGAAGAGAGC+TGG | 0.557404 | 5_2:+61876839 | Msa0780160:CDS |
| ATGCTCATCAAAATGGAAGC+AGG | 0.564607 | 5_2:+61877871 | Msa0780160:CDS |
| CTGGCTTGAGGACTATAATC+GGG | 0.565872 | 5_2:+61876858 | Msa0780160:CDS |
| TAAGCAATGAAACTCTAGCT+AGG | 0.569751 | 5_2:+61876086 | Msa0780160:CDS |
| TGGATACTCCTCCAGAGGAA+AGG | 0.571507 | 5_2:+61876377 | Msa0780160:CDS |
| TAGATGAATATGCCATGCTT+AGG | 0.573007 | 5_2:+61877512 | Msa0780160:CDS |
| CATGGCATATTCATCTAACA+TGG | 0.574080 | 5_2:-61877506 | None:intergenic |
| TAGGAAATATGGGATGAGGT+TGG | 0.576351 | 5_2:+61875239 | Msa0780160:intron |
| TTGACCAGCTTAAAGCAAGC+AGG | 0.578831 | 5_2:+61876590 | Msa0780160:CDS |
| TGAAGAAGAGAGCTGGCTTG+AGG | 0.585193 | 5_2:+61876846 | Msa0780160:CDS |
| GCTCAATCAGATCCAGAGCA+AGG | 0.588196 | 5_2:-61876465 | None:intergenic |
| AGGTCTGATTCATCAACTGC+AGG | 0.591067 | 5_2:-61875749 | None:intergenic |
| AAATATGTGGAGAGATAACT+GGG | 0.595369 | 5_2:+61875705 | Msa0780160:CDS |
| CTCAATCAGATCCAGAGCAA+GGG | 0.597501 | 5_2:-61876464 | None:intergenic |
| CAGCGCTAACTGGCCTAGCA+GGG | 0.597807 | 5_2:-61877779 | None:intergenic |
| AACGCTACAAAGATGAATTG+AGG | 0.599640 | 5_2:-61878038 | None:intergenic |
| CCGAAAAGATATATTGGACA+AGG | 0.599791 | 5_2:+61876801 | Msa0780160:CDS |
| ATGTGTTCTCTCCAATAAGA+GGG | 0.599871 | 5_2:-61875106 | None:intergenic |
| TGAACATGCTGCAAAGTCAA+GGG | 0.603606 | 5_2:+61875337 | Msa0780160:CDS |
| CTTGGATGTGTACAAGAGAA+AGG | 0.603877 | 5_2:+61875313 | Msa0780160:CDS |
| TCATCTAACATGGCAAGAAG+AGG | 0.607995 | 5_2:-61877496 | None:intergenic |
| CGTGCTAATGGAGGAGCCAA+CGG | 0.609438 | 5_2:+61877822 | Msa0780160:CDS |
| TACCTGCAGCTTCTTCAACA+AGG | 0.618085 | 5_2:-61875135 | None:intergenic |
| GGTGGCCCTCGTGCTAATGG+AGG | 0.622142 | 5_2:+61877813 | Msa0780160:CDS |
| TTAAGCGATAGCCGTCGGCT+AGG | 0.622863 | 5_2:-61877849 | None:intergenic |
| ATGTCAGCCAGTAATTCAGT+TGG | 0.624296 | 5_2:-61876739 | None:intergenic |
| TTGGCTCCTCCATTAGCACG+AGG | 0.625844 | 5_2:-61877819 | None:intergenic |
| ATTTCAGGAGCAGCAAAGCA+CGG | 0.626904 | 5_2:+61877725 | Msa0780160:CDS |
| CTTCTTTAGTACAGTAACTG+AGG | 0.629711 | 5_2:+61876018 | Msa0780160:CDS |
| AGTTGCTCCTGTGAATTATG+TGG | 0.632255 | 5_2:+61877932 | Msa0780160:CDS |
| GTTAGCGCTGCTAAGAAGGT+AGG | 0.647545 | 5_2:+61877792 | Msa0780160:CDS |
| CCGTCGGCTAGGAGTACCGT+TGG | 0.648858 | 5_2:-61877838 | None:intergenic |
| AACAGGTATAATGCAAGCAG+AGG | 0.650748 | 5_2:+61877203 | Msa0780160:CDS |
| GAGCATTAAGCGATAGCCGT+CGG | 0.654471 | 5_2:-61877854 | None:intergenic |
| TCTAATGGATACTCCTCCAG+AGG | 0.660216 | 5_2:+61876372 | Msa0780160:CDS |
| TGGGTTCAGTACCAGAAACG+TGG | 0.662305 | 5_2:-61877980 | None:intergenic |
| TGGCTCCTCCATTAGCACGA+GGG | 0.664829 | 5_2:-61877818 | None:intergenic |
| CTTATTGGAGAGAACACATG+TGG | 0.664987 | 5_2:+61875110 | Msa0780160:CDS |
| TAAGTGACAAGTAATTAGAG+AGG | 0.666851 | 5_2:+61878098 | Msa0780160:three_prime_UTR |
| AACTTCACAAACCCTAACCC+AGG | 0.674699 | 5_2:+61873878 | Msa0780160:five_prime_UTR |
| GGGTTCAGTACCAGAAACGT+GGG | 0.683944 | 5_2:-61877979 | None:intergenic |
| TACTAAAGAAGTCCATACCA+AGG | 0.685608 | 5_2:-61876006 | None:intergenic |
| AGCGCTGCTAAGAAGGTAGG+TGG | 0.685968 | 5_2:+61877795 | Msa0780160:CDS |
| TGAGGTTGGTGAAAGTGACG+AGG | 0.718708 | 5_2:+61875253 | Msa0780160:CDS |
| CCAACGGTACTCCTAGCCGA+CGG | 0.772977 | 5_2:+61877838 | Msa0780160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAAGAAAAAAAAAT+TGG | + | chr5_2:61874277-61874296 | Msa0780160:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+TGG | + | chr5_2:61875029-61875048 | Msa0780160:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGT+GGG | + | chr5_2:61875030-61875049 | Msa0780160:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGTG+GGG | + | chr5_2:61875031-61875050 | Msa0780160:intron | 10.0% |
| !! | ATAAATAGATTAGATTAGAT+TGG | - | chr5_2:61873754-61873773 | None:intergenic | 15.0% |
| !!! | TGATTTTTATATGCAATTAA+TGG | + | chr5_2:61874221-61874240 | Msa0780160:intron | 15.0% |
| !! | AAATGAATTCAAAATGATAA+AGG | - | chr5_2:61876263-61876282 | None:intergenic | 15.0% |
| !!! | TTATTTTGTTCTTTTTATGA+AGG | + | chr5_2:61876546-61876565 | Msa0780160:intron | 15.0% |
| !! | TTAAATCCAAAATGATATAT+TGG | - | chr5_2:61877148-61877167 | None:intergenic | 15.0% |
| !! | TTATGGTTATATATGCTTAA+TGG | + | chr5_2:61874172-61874191 | Msa0780160:intron | 20.0% |
| !! | AAAACTAACAAATTAAAGCA+AGG | - | chr5_2:61874319-61874338 | None:intergenic | 20.0% |
| !!! | GTTAGTTTTATGTATTCATA+TGG | + | chr5_2:61874330-61874349 | Msa0780160:intron | 20.0% |
| !! | TGTATTCATATGGATAATTT+AGG | + | chr5_2:61874340-61874359 | Msa0780160:intron | 20.0% |
| !! | GTATTCATATGGATAATTTA+GGG | + | chr5_2:61874341-61874360 | Msa0780160:intron | 20.0% |
| !! | AAAGACAAAAAAAGAAAAAG+AGG | - | chr5_2:61874546-61874565 | None:intergenic | 20.0% |
| !!! | ATGTTATCTTTATTTCTTGT+AGG | + | chr5_2:61875220-61875239 | Msa0780160:intron | 20.0% |
| !!! | TTTATTTCTTGTAGGAAATA+TGG | + | chr5_2:61875228-61875247 | Msa0780160:intron | 20.0% |
| !!! | TTATTTCTTGTAGGAAATAT+GGG | + | chr5_2:61875229-61875248 | Msa0780160:intron | 20.0% |
| !!! | ATTTTGAATTCATTTCTGAT+TGG | + | chr5_2:61876268-61876287 | Msa0780160:intron | 20.0% |
| !! | TAATATGTTAGCATAAGTTA+TGG | - | chr5_2:61876529-61876548 | None:intergenic | 20.0% |
| !! | TTAATAATAACAGTATCTGA+TGG | - | chr5_2:61877314-61877333 | None:intergenic | 20.0% |
| !!! | ATATTACTAGTTACTGTTTT+AGG | + | chr5_2:61878064-61878083 | Msa0780160:three_prime_UTR | 20.0% |
| !! | TCTTTTTGCTTACTTCTTAA+TGG | + | chr5_2:61874053-61874072 | Msa0780160:intron | 25.0% |
| !! | ATTGTCTACTATTTTCTTGT+TGG | + | chr5_2:61874440-61874459 | Msa0780160:intron | 25.0% |
| ! | AAATTCTACATCTGATTCTA+GGG | - | chr5_2:61874519-61874538 | None:intergenic | 25.0% |
| ! | AAAATTCTACATCTGATTCT+AGG | - | chr5_2:61874520-61874539 | None:intergenic | 25.0% |
| ! | AAACTATGCAAAATCATGAT+GGG | - | chr5_2:61874623-61874642 | None:intergenic | 25.0% |
| ! | AAAACTATGCAAAATCATGA+TGG | - | chr5_2:61874624-61874643 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTGTAAAATCACC+TGG | + | chr5_2:61874637-61874656 | Msa0780160:intron | 25.0% |
| ! | ACTAGTATACAATGTGAATT+CGG | - | chr5_2:61874729-61874748 | None:intergenic | 25.0% |
| ! | TCACATTGTATACTAGTATA+TGG | + | chr5_2:61874732-61874751 | Msa0780160:intron | 25.0% |
| ! | AAAGACAAAAAAAGCAAAAG+AGG | - | chr5_2:61874814-61874833 | None:intergenic | 25.0% |
| !! | TTATACAGTAACTTCGTTTT+TGG | + | chr5_2:61874843-61874862 | Msa0780160:intron | 25.0% |
| ! | AAAGATGAGTTTGTATATGA+CGG | + | chr5_2:61874897-61874916 | Msa0780160:intron | 25.0% |
| !! | AAGAGATTTTTCTATCTGTT+GGG | + | chr5_2:61874986-61875005 | Msa0780160:intron | 25.0% |
| ! | TCACAGATTCAAAAAATATG+TGG | + | chr5_2:61875692-61875711 | Msa0780160:CDS | 25.0% |
| ! | ATATTCTTCAAACTTCTTCA+GGG | - | chr5_2:61875777-61875796 | None:intergenic | 25.0% |
| !! | TCAAAAGGAAAAGGTAATTT+TGG | + | chr5_2:61875817-61875836 | Msa0780160:intron | 25.0% |
| !!! | TTTTCTTACATTGCTTTGTT+TGG | + | chr5_2:61875921-61875940 | Msa0780160:intron | 25.0% |
| ! | TTAATTGAGAAGCTAATTCT+TGG | - | chr5_2:61876339-61876358 | None:intergenic | 25.0% |
| !! | CATCTGAAGTTTAAAAGTTT+GGG | + | chr5_2:61876501-61876520 | Msa0780160:intron | 25.0% |
| ! | TGCTCATATAGAAATAGATT+CGG | + | chr5_2:61876666-61876685 | Msa0780160:CDS | 25.0% |
| ! | TTTAAGCCGAAAAGATATAT+TGG | + | chr5_2:61876795-61876814 | Msa0780160:CDS | 25.0% |
| !! | AAGCTAAAACTTGGTAATTT+CGG | - | chr5_2:61877084-61877103 | None:intergenic | 25.0% |
| !! | GTTTGTCCAATATATCATTT+TGG | + | chr5_2:61877139-61877158 | Msa0780160:intron | 25.0% |
| ! | ATACTGGTAAATAAAATTCC+TGG | + | chr5_2:61877263-61877282 | Msa0780160:CDS | 25.0% |
| ! | AATAAAATTCCTGGTATGTA+TGG | + | chr5_2:61877272-61877291 | Msa0780160:intron | 25.0% |
| ! | ACAAAAAGATGCTACATTAT+TGG | + | chr5_2:61877361-61877380 | Msa0780160:intron | 25.0% |
| !! | AGAATTAACATCGTTTCTTT+TGG | + | chr5_2:61877385-61877404 | Msa0780160:intron | 25.0% |
| ! | CATATCAAAAGATGGAAAAA+GGG | + | chr5_2:61877896-61877915 | Msa0780160:CDS | 25.0% |
| !! | TGTATGGTATATTTTCCATT+TGG | + | chr5_2:61878136-61878155 | Msa0780160:three_prime_UTR | 25.0% |
| !! | CCGTATATTTTCATACTAAA+GGG | - | chr5_2:61878198-61878217 | None:intergenic | 25.0% |
| ! | CCCTTTAGTATGAAAATATA+CGG | + | chr5_2:61878195-61878214 | Msa0780160:three_prime_UTR | 25.0% |
| !! | ACCGTATATTTTCATACTAA+AGG | - | chr5_2:61878199-61878218 | None:intergenic | 25.0% |
| AGAATAAGAAGAAGAGAGAA+TGG | - | chr5_2:61873907-61873926 | None:intergenic | 30.0% | |
| AAAGAAGAAGTAGATCTTAG+AGG | - | chr5_2:61873950-61873969 | None:intergenic | 30.0% | |
| CATAATTGAATGCACAACTA+AGG | - | chr5_2:61874157-61874176 | None:intergenic | 30.0% | |
| CTTAGTTGTGCATTCAATTA+TGG | + | chr5_2:61874155-61874174 | Msa0780160:intron | 30.0% | |
| !!! | TTTTGAGTTTGCTTTGACTA+TGG | + | chr5_2:61874396-61874415 | Msa0780160:intron | 30.0% |
| !!! | GCTTTGTTTTAGTGCATTTT+TGG | + | chr5_2:61874567-61874586 | Msa0780160:intron | 30.0% |
| !! | TTAGTGCATTTTTGGATTTG+CGG | + | chr5_2:61874575-61874594 | Msa0780160:intron | 30.0% |
| ! | TTGGTGTAAAGATCAGTTTT+TGG | + | chr5_2:61874862-61874881 | Msa0780160:intron | 30.0% |
| ! | GAAGAGATTTTTCTATCTGT+TGG | + | chr5_2:61874985-61875004 | Msa0780160:intron | 30.0% |
| !! | ATAGTTCCAGAAGTATTATC+AGG | - | chr5_2:61875584-61875603 | None:intergenic | 30.0% |
| !! | TAATACTTCTGGAACTATCA+AGG | + | chr5_2:61875586-61875605 | Msa0780160:CDS | 30.0% |
| ACAAAAGGAAGAAAGGATAA+AGG | + | chr5_2:61875652-61875671 | Msa0780160:CDS | 30.0% | |
| AAAATATGTGGAGAGATAAC+TGG | + | chr5_2:61875704-61875723 | Msa0780160:CDS | 30.0% | |
| AAATATGTGGAGAGATAACT+GGG | + | chr5_2:61875705-61875724 | Msa0780160:CDS | 30.0% | |
| GATATTCTTCAAACTTCTTC+AGG | - | chr5_2:61875778-61875797 | None:intergenic | 30.0% | |
| TCAAGAACTTCAAAAGGAAA+AGG | + | chr5_2:61875808-61875827 | Msa0780160:CDS | 30.0% | |
| GCGACTAGATGATATAATAT+TGG | - | chr5_2:61875852-61875871 | None:intergenic | 30.0% | |
| GTTAGGTAAGTGATATCAAA+TGG | - | chr5_2:61875888-61875907 | None:intergenic | 30.0% | |
| ! | AGTTTCATTGCTTATGCTTT+TGG | - | chr5_2:61876080-61876099 | None:intergenic | 30.0% |
| TGAAAGAAGATAAAAAGCAG+AGG | + | chr5_2:61876131-61876150 | Msa0780160:CDS | 30.0% | |
| AATTTACTTCCAAGTGTGAT+AGG | - | chr5_2:61876238-61876257 | None:intergenic | 30.0% | |
| CTTCTCAATTAATTGATCTG+TGG | + | chr5_2:61876347-61876366 | Msa0780160:CDS | 30.0% | |
| AATTGATCTGTGGAATCTAA+TGG | + | chr5_2:61876357-61876376 | Msa0780160:CDS | 30.0% | |
| ! | CCAAACTTTTAAACTTCAGA+TGG | - | chr5_2:61876503-61876522 | None:intergenic | 30.0% |
| ! | CCATCTGAAGTTTAAAAGTT+TGG | + | chr5_2:61876500-61876519 | Msa0780160:intron | 30.0% |
| !! | ATTATGGCATTGATTGATTC+TGG | + | chr5_2:61876706-61876725 | Msa0780160:CDS | 30.0% |
| ! | CCTTGTCCAATATATCTTTT+CGG | - | chr5_2:61876804-61876823 | None:intergenic | 30.0% |
| ACTGATAGACTATAGAAGAA+AGG | - | chr5_2:61877023-61877042 | None:intergenic | 30.0% | |
| ! | ACTTGGTAATTTCGGAAATA+TGG | - | chr5_2:61877076-61877095 | None:intergenic | 30.0% |
| ATAATAACAGTATCTGATGG+TGG | - | chr5_2:61877311-61877330 | None:intergenic | 30.0% | |
| GATATGTCATTCACATATGA+TGG | + | chr5_2:61877469-61877488 | Msa0780160:CDS | 30.0% | |
| AAGAAGAAAAACGAAGAATG+AGG | + | chr5_2:61877545-61877564 | Msa0780160:CDS | 30.0% | |
| AGAAGAAAAACGAAGAATGA+GGG | + | chr5_2:61877546-61877565 | Msa0780160:CDS | 30.0% | |
| TTTCTTCTGATCCTATAAAG+TGG | - | chr5_2:61877706-61877725 | None:intergenic | 30.0% | |
| ATAGGATCAGAAGAAATTTC+AGG | + | chr5_2:61877710-61877729 | Msa0780160:intron | 30.0% | |
| ! | CCTTTTTCCATCTTTTGATA+TGG | - | chr5_2:61877898-61877917 | None:intergenic | 30.0% |
| CCATATCAAAAGATGGAAAA+AGG | + | chr5_2:61877895-61877914 | Msa0780160:CDS | 30.0% | |
| TAAGTGACAAGTAATTAGAG+AGG | + | chr5_2:61878098-61878117 | Msa0780160:three_prime_UTR | 30.0% | |
| TGTATTAGTAAAGCTCCAAA+TGG | - | chr5_2:61878154-61878173 | None:intergenic | 30.0% | |
| GAGGTATGAGTATAGATCAA+AGG | - | chr5_2:61873931-61873950 | None:intergenic | 35.0% | |
| TAATCAAAGTCGCTGTTGAA+AGG | - | chr5_2:61874134-61874153 | None:intergenic | 35.0% | |
| ! | ATATGGATAATTTAGGGCAC+TGG | + | chr5_2:61874347-61874366 | Msa0780160:intron | 35.0% |
| ! | TTTGACTGGTCAAAGACTAT+GGG | - | chr5_2:61874480-61874499 | None:intergenic | 35.0% |
| CAAGATTTATCCGCTATGTA+GGG | - | chr5_2:61874943-61874962 | None:intergenic | 35.0% | |
| !!! | TTTTCTATCTGTTGGGTTGA+TGG | + | chr5_2:61874993-61875012 | Msa0780160:intron | 35.0% |
| ATGTGTTCTCTCCAATAAGA+GGG | - | chr5_2:61875109-61875128 | None:intergenic | 35.0% | |
| ! | CATTAGATGCACATGACTTT+TGG | + | chr5_2:61875185-61875204 | Msa0780160:intron | 35.0% |
| !!! | CACATGACTTTTGGATTAGT+AGG | + | chr5_2:61875194-61875213 | Msa0780160:intron | 35.0% |
| TGATGTACGCTTCTGATAAA+AGG | - | chr5_2:61875475-61875494 | None:intergenic | 35.0% | |
| TATGGCAACAAAAGGAAGAA+AGG | + | chr5_2:61875645-61875664 | Msa0780160:CDS | 35.0% | |
| TGAGCTTCAAGAACTTCAAA+AGG | + | chr5_2:61875802-61875821 | Msa0780160:CDS | 35.0% | |
| TACTAAAGAAGTCCATACCA+AGG | - | chr5_2:61876009-61876028 | None:intergenic | 35.0% | |
| CTTCTTTAGTACAGTAACTG+AGG | + | chr5_2:61876018-61876037 | Msa0780160:CDS | 35.0% | |
| TAAGCAATGAAACTCTAGCT+AGG | + | chr5_2:61876086-61876105 | Msa0780160:CDS | 35.0% | |
| !!! | TCTGATTGGCTTTTAGTCTA+TGG | + | chr5_2:61876282-61876301 | Msa0780160:intron | 35.0% |
| ! | TCTTTTTATGAAGGCTGAAG+TGG | + | chr5_2:61876555-61876574 | Msa0780160:intron | 35.0% |
| CATTGAACCAACTGAATTAC+TGG | + | chr5_2:61876732-61876751 | Msa0780160:CDS | 35.0% | |
| CCGAAAAGATATATTGGACA+AGG | + | chr5_2:61876801-61876820 | Msa0780160:CDS | 35.0% | |
| TATTGGACAAGGTTGAGAAA+TGG | + | chr5_2:61876812-61876831 | Msa0780160:CDS | 35.0% | |
| GTAATTTCGGAAATATGGCA+AGG | - | chr5_2:61877071-61877090 | None:intergenic | 35.0% | |
| CTTGCAGTAAAGCTAAAACT+TGG | - | chr5_2:61877093-61877112 | None:intergenic | 35.0% | |
| CTTACACAACAATGCAAAAC+AGG | + | chr5_2:61877175-61877194 | Msa0780160:intron | 35.0% | |
| CATGGCATATTCATCTAACA+TGG | - | chr5_2:61877509-61877528 | None:intergenic | 35.0% | |
| TAGATGAATATGCCATGCTT+AGG | + | chr5_2:61877512-61877531 | Msa0780160:CDS | 35.0% | |
| GTTTCACTGGTATGATGATT+AGG | + | chr5_2:61877572-61877591 | Msa0780160:intron | 35.0% | |
| TGACTGATTATCGAATCAAC+TGG | + | chr5_2:61877596-61877615 | Msa0780160:intron | 35.0% | |
| !! | TTACTGACTCATTTACTCTG+TGG | + | chr5_2:61877675-61877694 | Msa0780160:intron | 35.0% |
| TCGCTTAATGCTCATCAAAA+TGG | + | chr5_2:61877864-61877883 | Msa0780160:CDS | 35.0% | |
| TGGAAACAAAGCTCTCATTA+GGG | - | chr5_2:61878017-61878036 | None:intergenic | 35.0% | |
| TTGGAAACAAAGCTCTCATT+AGG | - | chr5_2:61878018-61878037 | None:intergenic | 35.0% | |
| CTACAAAGATGAATTGAGGT+TGG | - | chr5_2:61878037-61878056 | None:intergenic | 35.0% | |
| AACGCTACAAAGATGAATTG+AGG | - | chr5_2:61878041-61878060 | None:intergenic | 35.0% | |
| GGAGCTTTACTAATACATGT+TGG | + | chr5_2:61878157-61878176 | Msa0780160:three_prime_UTR | 35.0% | |
| TTCATACTAAAGGGCTTCAA+TGG | - | chr5_2:61878189-61878208 | None:intergenic | 35.0% | |
| AGAAGAGAGAATGGTTACCT+GGG | - | chr5_2:61873898-61873917 | None:intergenic | 40.0% | |
| AAGAAGAGAGAATGGTTACC+TGG | - | chr5_2:61873899-61873918 | None:intergenic | 40.0% | |
| ! | CTTTGACTGGTCAAAGACTA+TGG | - | chr5_2:61874481-61874500 | None:intergenic | 40.0% |
| TGAAAACTAGCGACTTTGAC+TGG | - | chr5_2:61874494-61874513 | None:intergenic | 40.0% | |
| AAACGCTGCATCTCATTCTA+GGG | - | chr5_2:61874784-61874803 | None:intergenic | 40.0% | |
| AAAACGCTGCATCTCATTCT+AGG | - | chr5_2:61874785-61874804 | None:intergenic | 40.0% | |
| ATTTATCCGCTATGTAGGGT+CGG | - | chr5_2:61874939-61874958 | None:intergenic | 40.0% | |
| GCAAGATTTATCCGCTATGT+AGG | - | chr5_2:61874944-61874963 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTGTGGGGTGTGC+AGG | + | chr5_2:61875039-61875058 | Msa0780160:intron | 40.0% |
| !!! | AGGGTTTTGAGCTTCAGTTA+CGG | - | chr5_2:61875090-61875109 | None:intergenic | 40.0% |
| GAAGCTCAAAACCCTCTTAT+TGG | + | chr5_2:61875095-61875114 | Msa0780160:CDS | 40.0% | |
| CATGTGTTCTCTCCAATAAG+AGG | - | chr5_2:61875110-61875129 | None:intergenic | 40.0% | |
| CTTATTGGAGAGAACACATG+TGG | + | chr5_2:61875110-61875129 | Msa0780160:CDS | 40.0% | |
| CTTGTAGGAAATATGGGATG+AGG | + | chr5_2:61875235-61875254 | Msa0780160:intron | 40.0% | |
| TAGGAAATATGGGATGAGGT+TGG | + | chr5_2:61875239-61875258 | Msa0780160:intron | 40.0% | |
| CTTGGATGTGTACAAGAGAA+AGG | + | chr5_2:61875313-61875332 | Msa0780160:CDS | 40.0% | |
| TTGAACATGCTGCAAAGTCA+AGG | + | chr5_2:61875336-61875355 | Msa0780160:CDS | 40.0% | |
| TGAACATGCTGCAAAGTCAA+GGG | + | chr5_2:61875337-61875356 | Msa0780160:CDS | 40.0% | |
| TCTACACTTCTATCAGCTCT+TGG | + | chr5_2:61875401-61875420 | Msa0780160:CDS | 40.0% | |
| TGAACAGCTATGGCAACAAA+AGG | + | chr5_2:61875637-61875656 | Msa0780160:CDS | 40.0% | |
| CAACTGCAGGTACATCATTA+AGG | - | chr5_2:61875739-61875758 | None:intergenic | 40.0% | |
| AAAACTGTCGATGCACTGTT+AGG | - | chr5_2:61875905-61875924 | None:intergenic | 40.0% | |
| TAGAATCATTCAGGCTTGGA+TGG | - | chr5_2:61876045-61876064 | None:intergenic | 40.0% | |
| TAAAAAGCAGAGGTTGCACA+AGG | + | chr5_2:61876141-61876160 | Msa0780160:CDS | 40.0% | |
| ATATCCATGCCTATCACACT+TGG | + | chr5_2:61876226-61876245 | Msa0780160:intron | 40.0% | |
| TCAAACAGTTTCCTTTCCTC+TGG | - | chr5_2:61876391-61876410 | None:intergenic | 40.0% | |
| CTGAGATGTTACAGGTAACA+TGG | - | chr5_2:61876414-61876433 | None:intergenic | 40.0% | |
| AACAGAAGCTGAGATGTTAC+AGG | - | chr5_2:61876422-61876441 | None:intergenic | 40.0% | |
| ! | GTTGATGAAGTCACTATTCC+TGG | + | chr5_2:61876439-61876458 | Msa0780160:CDS | 40.0% |
| TGCTGCAAGAGAGAAGATTA+TGG | + | chr5_2:61876690-61876709 | Msa0780160:CDS | 40.0% | |
| ATGTCAGCCAGTAATTCAGT+TGG | - | chr5_2:61876742-61876761 | None:intergenic | 40.0% | |
| ! | AACTGAATTACTGGCTGACA+TGG | + | chr5_2:61876741-61876760 | Msa0780160:CDS | 40.0% |
| TCGGCTTAAAGCTTCTTCTT+TGG | - | chr5_2:61876785-61876804 | None:intergenic | 40.0% | |
| ACACAGAGAAAAACGCACAA+GGG | - | chr5_2:61876896-61876915 | None:intergenic | 40.0% | |
| !! | TTGTTGGTTGTGCACAGTTT+TGG | + | chr5_2:61876921-61876940 | Msa0780160:intron | 40.0% |
| ! | TGCAAATTGACTCAGTTCAG+AGG | - | chr5_2:61876996-61877015 | None:intergenic | 40.0% |
| ATGCAAAACAGGATGACAAC+AGG | + | chr5_2:61877186-61877205 | Msa0780160:intron | 40.0% | |
| AACAGGTATAATGCAAGCAG+AGG | + | chr5_2:61877203-61877222 | Msa0780160:CDS | 40.0% | |
| GGTTTCATTCCATACATACC+AGG | - | chr5_2:61877284-61877303 | None:intergenic | 40.0% | |
| !! | TTTTGGTGCATATGCAGCTT+TGG | + | chr5_2:61877402-61877421 | Msa0780160:intron | 40.0% |
| ! | TGCAGCTTTGGTTGATACAT+TGG | + | chr5_2:61877414-61877433 | Msa0780160:intron | 40.0% |
| TCATCTAACATGGCAAGAAG+AGG | - | chr5_2:61877499-61877518 | None:intergenic | 40.0% | |
| AGAATGAGGGTAAGTTTCAC+TGG | + | chr5_2:61877559-61877578 | Msa0780160:intron | 40.0% | |
| CTGTGGACTTTCCACTTTAT+AGG | + | chr5_2:61877692-61877711 | Msa0780160:intron | 40.0% | |
| ATGCTCATCAAAATGGAAGC+AGG | + | chr5_2:61877871-61877890 | Msa0780160:CDS | 40.0% | |
| AGCAGGTCCATATCAAAAGA+TGG | + | chr5_2:61877888-61877907 | Msa0780160:CDS | 40.0% | |
| ACATAATTCACAGGAGCAAC+TGG | - | chr5_2:61877933-61877952 | None:intergenic | 40.0% | |
| AGTTGCTCCTGTGAATTATG+TGG | + | chr5_2:61877932-61877951 | Msa0780160:CDS | 40.0% | |
| ! | AGCAGCATCTTCTTTTGACA+TGG | - | chr5_2:61877958-61877977 | None:intergenic | 40.0% |
| ATTGGGAAGAAGCTACGATT+TGG | - | chr5_2:61878252-61878271 | None:intergenic | 40.0% | |
| AATCGTAGCTTCTTCCCAAT+TGG | + | chr5_2:61878252-61878271 | Msa0780160:three_prime_UTR | 40.0% | |
| AACTTCACAAACCCTAACCC+AGG | + | chr5_2:61873878-61873897 | Msa0780160:five_prime_UTR | 45.0% | |
| GAGAATGGTTACCTGGGTTA+GGG | - | chr5_2:61873892-61873911 | None:intergenic | 45.0% | |
| AGAGAATGGTTACCTGGGTT+AGG | - | chr5_2:61873893-61873912 | None:intergenic | 45.0% | |
| !! | GTGCATTTTTGGATTTGCGG+TGG | + | chr5_2:61874578-61874597 | Msa0780160:intron | 45.0% |
| !! | GCGGTGGTTTGTTGAAATCA+TGG | + | chr5_2:61874594-61874613 | Msa0780160:intron | 45.0% |
| TGCTGAAATCACAGTGAACC+AGG | - | chr5_2:61874658-61874677 | None:intergenic | 45.0% | |
| !! | AGGTTGCTCTGGAACTTCAA+TGG | + | chr5_2:61875064-61875083 | Msa0780160:exon | 45.0% |
| TTCCTTGTTGAAGAAGCTGC+AGG | + | chr5_2:61875133-61875152 | Msa0780160:CDS | 45.0% | |
| TACCTGCAGCTTCTTCAACA+AGG | - | chr5_2:61875138-61875157 | None:intergenic | 45.0% | |
| TTGGTGAAAGTGACGAGGAA+CGG | + | chr5_2:61875258-61875277 | Msa0780160:CDS | 45.0% | |
| GATGCTTCTTCAGTTAGAGC+AGG | + | chr5_2:61875286-61875305 | Msa0780160:CDS | 45.0% | |
| TCTATCAGCTCTTGGCGAAA+AGG | + | chr5_2:61875409-61875428 | Msa0780160:CDS | 45.0% | |
| CTATCAGCTCTTGGCGAAAA+GGG | + | chr5_2:61875410-61875429 | Msa0780160:CDS | 45.0% | |
| TCGCAGCCTGATAATACTTC+TGG | + | chr5_2:61875575-61875594 | Msa0780160:intron | 45.0% | |
| AGGTCTGATTCATCAACTGC+AGG | - | chr5_2:61875752-61875771 | None:intergenic | 45.0% | |
| CTTCAAACTTCTTCAGGGTC+AGG | - | chr5_2:61875772-61875791 | None:intergenic | 45.0% | |
| CATGATCTATGTGCTGTCCT+TGG | + | chr5_2:61875989-61876008 | Msa0780160:CDS | 45.0% | |
| TCTATGTGCTGTCCTTGGTA+TGG | + | chr5_2:61875994-61876013 | Msa0780160:CDS | 45.0% | |
| CCAGTAGAATCATTCAGGCT+TGG | - | chr5_2:61876049-61876068 | None:intergenic | 45.0% | |
| CCAAGCCTGAATGATTCTAC+TGG | + | chr5_2:61876046-61876065 | Msa0780160:CDS | 45.0% | |
| GCACACCAGTAGAATCATTC+AGG | - | chr5_2:61876054-61876073 | None:intergenic | 45.0% | |
| ACTTCCAAGTGTGATAGGCA+TGG | - | chr5_2:61876233-61876252 | None:intergenic | 45.0% | |
| GCTAATTCTTGGAGCTGCAA+TGG | - | chr5_2:61876328-61876347 | None:intergenic | 45.0% | |
| ! | TCTAATGGATACTCCTCCAG+AGG | + | chr5_2:61876372-61876391 | Msa0780160:CDS | 45.0% |
| AACAGTTTCCTTTCCTCTGG+AGG | - | chr5_2:61876388-61876407 | None:intergenic | 45.0% | |
| CTCAATCAGATCCAGAGCAA+GGG | - | chr5_2:61876467-61876486 | None:intergenic | 45.0% | |
| TTGACCAGCTTAAAGCAAGC+AGG | + | chr5_2:61876590-61876609 | Msa0780160:CDS | 45.0% | |
| ! | TCATCCTGCTTGCTTTAAGC+TGG | - | chr5_2:61876597-61876616 | None:intergenic | 45.0% |
| GCTTAAAGCAAGCAGGATGA+AGG | + | chr5_2:61876597-61876616 | Msa0780160:CDS | 45.0% | |
| !! | GCTGGCTTGAGGACTATAAT+CGG | + | chr5_2:61876857-61876876 | Msa0780160:CDS | 45.0% |
| ! | CTGGCTTGAGGACTATAATC+GGG | + | chr5_2:61876858-61876877 | Msa0780160:CDS | 45.0% |
| GACACAGAGAAAAACGCACA+AGG | - | chr5_2:61876897-61876916 | None:intergenic | 45.0% | |
| TTTCTCTGTGTCCGTGTTGT+TGG | + | chr5_2:61876905-61876924 | Msa0780160:intron | 45.0% | |
| ACTGTGCACAACCAACAACA+CGG | - | chr5_2:61876919-61876938 | None:intergenic | 45.0% | |
| !! | GTGCACAGTTTTGGTGAAAG+AGG | + | chr5_2:61876930-61876949 | Msa0780160:intron | 45.0% |
| !! | ACAGTATCTGATGGTGGTTG+TGG | - | chr5_2:61877305-61877324 | None:intergenic | 45.0% |
| ATGCCATGCTTAGGCATGAA+CGG | + | chr5_2:61877521-61877540 | Msa0780160:CDS | 45.0% | |
| ATTTCAGGAGCAGCAAAGCA+CGG | + | chr5_2:61877725-61877744 | Msa0780160:CDS | 45.0% | |
| GACATGGCCACATAATTCAC+AGG | - | chr5_2:61877942-61877961 | None:intergenic | 45.0% | |
| CATTAGGGTGATGTTGGGAT+GGG | - | chr5_2:61878002-61878021 | None:intergenic | 45.0% | |
| TCATTAGGGTGATGTTGGGA+TGG | - | chr5_2:61878003-61878022 | None:intergenic | 45.0% | |
| GCTCTCATTAGGGTGATGTT+GGG | - | chr5_2:61878007-61878026 | None:intergenic | 45.0% | |
| AGCTCTCATTAGGGTGATGT+TGG | - | chr5_2:61878008-61878027 | None:intergenic | 45.0% | |
| ! | GAACTGTTCTGAGCTGTGTA+TGG | + | chr5_2:61878120-61878139 | Msa0780160:three_prime_UTR | 45.0% |
| ATGTAGCCGACCCTACATAG+CGG | + | chr5_2:61874930-61874949 | Msa0780160:intron | 50.0% | |
| !! | TGAGGTTGGTGAAAGTGACG+AGG | + | chr5_2:61875253-61875272 | Msa0780160:CDS | 50.0% |
| TGGTGAAAGTGACGAGGAAC+GGG | + | chr5_2:61875259-61875278 | Msa0780160:CDS | 50.0% | |
| !! | TCAGTTAGAGCAGGAGTGCT+TGG | + | chr5_2:61875295-61875314 | Msa0780160:CDS | 50.0% |
| CACCAGCACTTGAACAGCTA+TGG | + | chr5_2:61875627-61875646 | Msa0780160:CDS | 50.0% | |
| TGCCATAGCTGTTCAAGTGC+TGG | - | chr5_2:61875632-61875651 | None:intergenic | 50.0% | |
| !! | GCTTTGTTTGGCAGAGTGAC+AGG | + | chr5_2:61875933-61875952 | Msa0780160:intron | 50.0% |
| GCAGAGTGACAGGTTGCAAA+AGG | + | chr5_2:61875943-61875962 | Msa0780160:intron | 50.0% | |
| TGGATACTCCTCCAGAGGAA+AGG | + | chr5_2:61876377-61876396 | Msa0780160:CDS | 50.0% | |
| GCTCAATCAGATCCAGAGCA+AGG | - | chr5_2:61876468-61876487 | None:intergenic | 50.0% | |
| ! | TGCTCTGGATCTGATTGAGC+AGG | + | chr5_2:61876468-61876487 | Msa0780160:CDS | 50.0% |
| CAGCTTGTGAAGAAGAGAGC+TGG | + | chr5_2:61876839-61876858 | Msa0780160:CDS | 50.0% | |
| !! | TGAAGAAGAGAGCTGGCTTG+AGG | + | chr5_2:61876846-61876865 | Msa0780160:CDS | 50.0% |
| TCAAGCGAGCAGAGAAAGCT+CGG | + | chr5_2:61877240-61877259 | Msa0780160:CDS | 50.0% | |
| AGCAGAGAAAGCTCGGATAC+TGG | + | chr5_2:61877247-61877266 | Msa0780160:CDS | 50.0% | |
| TGGTTGCCAAAACACGTGCA+TGG | + | chr5_2:61877434-61877453 | Msa0780160:CDS | 50.0% | |
| GGTTGCCAAAACACGTGCAT+GGG | + | chr5_2:61877435-61877454 | Msa0780160:CDS | 50.0% | |
| ! | CTCTTCCCATGCACGTGTTT+TGG | - | chr5_2:61877443-61877462 | None:intergenic | 50.0% |
| TGCCATGCTTAGGCATGAAC+GGG | + | chr5_2:61877522-61877541 | Msa0780160:CDS | 50.0% | |
| TTCCCGTTCATGCCTAAGCA+TGG | - | chr5_2:61877527-61877546 | None:intergenic | 50.0% | |
| TTTGAACCAAAGGGGGCTTC+TGG | - | chr5_2:61877753-61877772 | None:intergenic | 50.0% | |
| !!! | GCTGGGTTTTGAACCAAAGG+GGG | - | chr5_2:61877760-61877779 | None:intergenic | 50.0% |
| !!! | GGCTGGGTTTTGAACCAAAG+GGG | - | chr5_2:61877761-61877780 | None:intergenic | 50.0% |
| !!! | GGGCTGGGTTTTGAACCAAA+GGG | - | chr5_2:61877762-61877781 | None:intergenic | 50.0% |
| !!! | AGGGCTGGGTTTTGAACCAA+AGG | - | chr5_2:61877763-61877782 | None:intergenic | 50.0% |
| ACCTTCTTAGCAGCGCTAAC+TGG | - | chr5_2:61877792-61877811 | None:intergenic | 50.0% | |
| GTTAGCGCTGCTAAGAAGGT+AGG | + | chr5_2:61877792-61877811 | Msa0780160:CDS | 50.0% | |
| GAGCATTAAGCGATAGCCGT+CGG | - | chr5_2:61877857-61877876 | None:intergenic | 50.0% | |
| GGGTTCAGTACCAGAAACGT+GGG | - | chr5_2:61877982-61878001 | None:intergenic | 50.0% | |
| TGGGTTCAGTACCAGAAACG+TGG | - | chr5_2:61877983-61878002 | None:intergenic | 50.0% | |
| ! | TTTTGTGGGGTGTGCAGGCT+AGG | + | chr5_2:61875044-61875063 | Msa0780160:intron | 55.0% |
| CTTGGCGAAAAGGGCTTTGC+TGG | + | chr5_2:61875419-61875438 | Msa0780160:CDS | 55.0% | |
| TATTCCTGGTGCCCTTGCTC+TGG | + | chr5_2:61876453-61876472 | Msa0780160:CDS | 55.0% | |
| GAGCTTTCTCTGCTCGCTTG+AGG | - | chr5_2:61877241-61877260 | None:intergenic | 55.0% | |
| GTTCAAAACCCAGCCCTGCT+AGG | + | chr5_2:61877766-61877785 | Msa0780160:CDS | 55.0% | |
| GCCAGTTAGCGCTGCTAAGA+AGG | + | chr5_2:61877788-61877807 | Msa0780160:CDS | 55.0% | |
| AGCGCTGCTAAGAAGGTAGG+TGG | + | chr5_2:61877795-61877814 | Msa0780160:CDS | 55.0% | |
| TGGCTCCTCCATTAGCACGA+GGG | - | chr5_2:61877821-61877840 | None:intergenic | 55.0% | |
| TTGGCTCCTCCATTAGCACG+AGG | - | chr5_2:61877822-61877841 | None:intergenic | 55.0% | |
| CGTGCTAATGGAGGAGCCAA+CGG | + | chr5_2:61877822-61877841 | Msa0780160:CDS | 55.0% | |
| ! | TTAAGCGATAGCCGTCGGCT+AGG | - | chr5_2:61877852-61877871 | None:intergenic | 55.0% |
| ! | GATGCTGCTTCCCACGTTTC+TGG | + | chr5_2:61877969-61877988 | Msa0780160:CDS | 55.0% |
| GTGTGCAGGCTAGGTTGCTC+TGG | + | chr5_2:61875053-61875072 | Msa0780160:intron | 60.0% | |
| !! | AGATCCAGAGCAAGGGCACC+AGG | - | chr5_2:61876460-61876479 | None:intergenic | 60.0% |
| ACGGAACCAGAAGCCCCCTT+TGG | + | chr5_2:61877744-61877763 | Msa0780160:CDS | 60.0% | |
| ! | CTAACTGGCCTAGCAGGGCT+GGG | - | chr5_2:61877777-61877796 | None:intergenic | 60.0% |
| ! | CAGCGCTAACTGGCCTAGCA+GGG | - | chr5_2:61877782-61877801 | None:intergenic | 60.0% |
| GTAGGTGGCCCTCGTGCTAA+TGG | + | chr5_2:61877810-61877829 | Msa0780160:CDS | 60.0% | |
| CCAACGGTACTCCTAGCCGA+CGG | + | chr5_2:61877838-61877857 | Msa0780160:CDS | 60.0% | |
| ! | GCTAACTGGCCTAGCAGGGC+TGG | - | chr5_2:61877778-61877797 | None:intergenic | 65.0% |
| ! | GCAGCGCTAACTGGCCTAGC+AGG | - | chr5_2:61877783-61877802 | None:intergenic | 65.0% |
| GGTGGCCCTCGTGCTAATGG+AGG | + | chr5_2:61877813-61877832 | Msa0780160:CDS | 65.0% | |
| !! | CCGTCGGCTAGGAGTACCGT+TGG | - | chr5_2:61877841-61877860 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 61873647 | 61878286 | 61873647 | ID=Msa0780160;Name=Msa0780160 |
| chr5_2 | mRNA | 61873647 | 61878286 | 61873647 | ID=Msa0780160-mRNA-1;Parent=Msa0780160;Name=Msa0780160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=249|1|1|1|0.8|0.72|11|267|583 |
| chr5_2 | exon | 61873647 | 61873742 | 61873647 | ID=Msa0780160-mRNA-1:exon:18180;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61873769 | 61873899 | 61873769 | ID=Msa0780160-mRNA-1:exon:18181;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61875061 | 61875154 | 61875061 | ID=Msa0780160-mRNA-1:exon:18182;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61875242 | 61875445 | 61875242 | ID=Msa0780160-mRNA-1:exon:18183;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61875581 | 61875829 | 61875581 | ID=Msa0780160-mRNA-1:exon:18184;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61875947 | 61876162 | 61875947 | ID=Msa0780160-mRNA-1:exon:18185;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61876334 | 61876489 | 61876334 | ID=Msa0780160-mRNA-1:exon:18186;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61876568 | 61876879 | 61876568 | ID=Msa0780160-mRNA-1:exon:18187;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61877197 | 61877284 | 61877197 | ID=Msa0780160-mRNA-1:exon:18188;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61877419 | 61877567 | 61877419 | ID=Msa0780160-mRNA-1:exon:18189;Parent=Msa0780160-mRNA-1 |
| chr5_2 | exon | 61877714 | 61878286 | 61877714 | ID=Msa0780160-mRNA-1:exon:18190;Parent=Msa0780160-mRNA-1 |
| chr5_2 | five_prime_UTR | 61873647 | 61873742 | 61873647 | ID=Msa0780160-mRNA-1:five_prime_utr;Parent=Msa0780160-mRNA-1 |
| chr5_2 | five_prime_UTR | 61873769 | 61873899 | 61873769 | ID=Msa0780160-mRNA-1:five_prime_utr;Parent=Msa0780160-mRNA-1 |
| chr5_2 | five_prime_UTR | 61875061 | 61875082 | 61875061 | ID=Msa0780160-mRNA-1:five_prime_utr;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61875083 | 61875154 | 61875083 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61875242 | 61875445 | 61875242 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61875581 | 61875829 | 61875581 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61875947 | 61876162 | 61875947 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61876334 | 61876489 | 61876334 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61876568 | 61876879 | 61876568 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61877197 | 61877284 | 61877197 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61877419 | 61877567 | 61877419 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | CDS | 61877714 | 61878019 | 61877714 | ID=Msa0780160-mRNA-1:cds;Parent=Msa0780160-mRNA-1 |
| chr5_2 | three_prime_UTR | 61878020 | 61878286 | 61878020 | ID=Msa0780160-mRNA-1:three_prime_utr;Parent=Msa0780160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
