Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863270 | XP_003617643.1 | 98.971 | 583 | 5 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863270 | sp|Q9FLP0|MA651_ARATH | 78.098 | 589 | 121 | 6 | 1 | 583 | 1 | 587 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863270 | G7K8P9 | 98.971 | 583 | 5 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0780160 | Msa0863270 | 0.814294 | 1.657494e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863270 | MtrunA17_Chr5g0444881 | 98.971 | 583 | 5 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Msa0863270 | MtrunA17_Chr1g0164981 | 49.066 | 589 | 273 | 8 | 15 | 578 | 16 | 602 | 0.0 | 539 |
| Msa0863270 | MtrunA17_Chr8g0354131 | 50.000 | 566 | 266 | 6 | 15 | 574 | 14 | 568 | 0.0 | 535 |
| Msa0863270 | MtrunA17_Chr1g0188201 | 53.042 | 526 | 237 | 5 | 12 | 536 | 12 | 528 | 4.28e-177 | 518 |
| Msa0863270 | MtrunA17_Chr6g0476051 | 52.124 | 518 | 229 | 8 | 12 | 524 | 13 | 516 | 4.90e-174 | 510 |
| Msa0863270 | MtrunA17_Chr3g0122591 | 44.706 | 595 | 297 | 8 | 13 | 583 | 17 | 603 | 3.10e-166 | 486 |
| Msa0863270 | MtrunA17_Chr7g0245851 | 43.321 | 524 | 284 | 5 | 13 | 536 | 366 | 876 | 5.58e-129 | 403 |
| Msa0863270 | MtrunA17_Chr8g0345241 | 44.444 | 513 | 241 | 9 | 12 | 508 | 12 | 496 | 1.29e-126 | 381 |
| Msa0863270 | MtrunA17_Chr5g0410361 | 52.632 | 76 | 34 | 1 | 247 | 322 | 20 | 93 | 4.39e-16 | 73.9 |
| Msa0863270 | MtrunA17_Chr4g0039561 | 56.140 | 57 | 25 | 0 | 21 | 77 | 141 | 197 | 6.50e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863270 | AT5G55230.3 | 78.098 | 589 | 121 | 6 | 1 | 583 | 1 | 587 | 0.0 | 905 |
| Msa0863270 | AT5G55230.1 | 78.098 | 589 | 121 | 6 | 1 | 583 | 1 | 587 | 0.0 | 905 |
| Msa0863270 | AT5G55230.2 | 74.434 | 618 | 121 | 7 | 1 | 583 | 1 | 616 | 0.0 | 889 |
| Msa0863270 | AT4G26760.1 | 75.342 | 584 | 137 | 3 | 1 | 583 | 1 | 578 | 0.0 | 883 |
| Msa0863270 | AT1G14690.1 | 48.116 | 584 | 280 | 9 | 15 | 578 | 17 | 597 | 7.34e-178 | 516 |
| Msa0863270 | AT1G14690.2 | 48.116 | 584 | 280 | 9 | 15 | 578 | 17 | 597 | 7.34e-178 | 516 |
| Msa0863270 | AT2G01910.1 | 47.483 | 596 | 279 | 9 | 15 | 583 | 17 | 605 | 5.72e-175 | 509 |
| Msa0863270 | AT2G38720.1 | 47.740 | 553 | 272 | 6 | 19 | 568 | 12 | 550 | 3.04e-169 | 492 |
| Msa0863270 | AT2G01910.2 | 47.285 | 571 | 267 | 9 | 40 | 583 | 1 | 564 | 4.84e-163 | 477 |
| Msa0863270 | AT5G51600.1 | 50.189 | 530 | 253 | 6 | 13 | 538 | 13 | 535 | 1.17e-159 | 473 |
| Msa0863270 | AT1G27920.1 | 47.036 | 523 | 267 | 6 | 13 | 531 | 17 | 533 | 1.92e-159 | 468 |
| Msa0863270 | AT3G60840.1 | 42.959 | 561 | 302 | 6 | 13 | 570 | 13 | 558 | 5.16e-144 | 432 |
| Msa0863270 | AT5G62250.2 | 44.338 | 521 | 272 | 8 | 13 | 518 | 7 | 524 | 9.30e-125 | 378 |
| Msa0863270 | AT5G62250.1 | 44.338 | 521 | 272 | 8 | 13 | 518 | 7 | 524 | 9.30e-125 | 378 |
| Msa0863270 | AT1G27920.2 | 47.716 | 394 | 201 | 3 | 13 | 403 | 17 | 408 | 1.72e-119 | 360 |
Find 150 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTCTTGTAGGAAATA+TGG | 0.154851 | 5_4:+63059393 | Msa0863270:intron |
| GATATTCTTCAAACTTATTC+AGG | 0.183211 | 5_4:-63059940 | None:intergenic |
| AGTTTCATTGCTTATGCTTT+TGG | 0.186565 | 5_4:-63060242 | None:intergenic |
| GATGCTGCTTCCCACGTTTC+TGG | 0.194759 | 5_4:+63062134 | Msa0863270:CDS |
| CATTGTGGTCACAATCAATT+TGG | 0.211990 | 5_4:-63062431 | None:intergenic |
| ATTATGGCATTGATTGATTC+TGG | 0.215257 | 5_4:+63060871 | Msa0863270:CDS |
| GAAGCTCAAAACCCTCTTAT+TGG | 0.235885 | 5_4:+63059260 | Msa0863270:CDS |
| CTCTTCCCATGCACGTGTTT+TGG | 0.242051 | 5_4:-63061607 | None:intergenic |
| CCATATCAAAAGATGGAAAA+AGG | 0.249870 | 5_4:+63062060 | Msa0863270:CDS |
| TTAATTGAGAAGCTAATTCT+TGG | 0.260019 | 5_4:-63060501 | None:intergenic |
| ATAGGATCAGAAGAAATTTC+AGG | 0.264115 | 5_4:+63061875 | Msa0863270:intron |
| TCGCTTAATGCTCATCAAAA+TGG | 0.292941 | 5_4:+63062029 | Msa0863270:CDS |
| TCGGCTTAAAGCTTCTTCTT+TGG | 0.293161 | 5_4:-63060947 | None:intergenic |
| CATTGAACCAACTGAATTAC+TGG | 0.310358 | 5_4:+63060897 | Msa0863270:CDS |
| TCGCAGCCTGATAATACTTC+TGG | 0.311689 | 5_4:+63059740 | Msa0863270:intron |
| AAAATATGTGGAGAGATAAC+TGG | 0.337379 | 5_4:+63059869 | Msa0863270:CDS |
| CTTGGCGAAAAGGGCTTTGC+TGG | 0.338989 | 5_4:+63059584 | Msa0863270:CDS |
| CCCTTTAGTATGAAAATATA+CGG | 0.340588 | 5_4:+63062360 | Msa0863270:three_prime_UTR |
| GCTAACTGGCCTAGCAGGGC+TGG | 0.343030 | 5_4:-63061940 | None:intergenic |
| TTATTTCTTGTAGGAAATAT+GGG | 0.351927 | 5_4:+63059394 | Msa0863270:intron |
| TTGGAAACAAAGCTCTCATT+AGG | 0.354992 | 5_4:-63062180 | None:intergenic |
| CAACTGCAGGTACATCATTA+AGG | 0.363873 | 5_4:-63059901 | None:intergenic |
| GCACACCAGTAGAATCATTC+AGG | 0.370135 | 5_4:-63060216 | None:intergenic |
| ATAGTTCCAGAAGTATTATC+AGG | 0.372534 | 5_4:-63059746 | None:intergenic |
| TATTCCTGGTGCCCTTGCTC+TGG | 0.378206 | 5_4:+63060618 | Msa0863270:CDS |
| AGAGAATGGTTACCTGGGTT+AGG | 0.384538 | 5_4:-63058072 | None:intergenic |
| GTTGATGAAGTCACTATTCC+TGG | 0.387802 | 5_4:+63060604 | Msa0863270:CDS |
| CTTCAAACTTATTCAGGGTC+AGG | 0.389201 | 5_4:-63059934 | None:intergenic |
| AATTGATCTGTGGAATCTAA+TGG | 0.391031 | 5_4:+63060522 | Msa0863270:CDS |
| ACCTTCTTAGCAGCGCTAAC+TGG | 0.396718 | 5_4:-63061954 | None:intergenic |
| TCAAACAGTTTCCTTTCCTC+TGG | 0.399403 | 5_4:-63060553 | None:intergenic |
| GTAGGTGGCCCTCGTGCTAA+TGG | 0.403729 | 5_4:+63061975 | Msa0863270:CDS |
| ATTTGGAAGAAGCTACGATT+TGG | 0.412105 | 5_4:-63062414 | None:intergenic |
| ACAAAAGGAAGAAAGGATAA+AGG | 0.418529 | 5_4:+63059817 | Msa0863270:CDS |
| CTAACTGGCCTAGCAGGGCT+GGG | 0.418614 | 5_4:-63061939 | None:intergenic |
| TCATCCTGCTTGCTTTAAGC+TGG | 0.421882 | 5_4:-63060759 | None:intergenic |
| AGCTCTCATTAGGGTGATGT+TGG | 0.426206 | 5_4:-63062170 | None:intergenic |
| GCAGCGCTAACTGGCCTAGC+AGG | 0.426792 | 5_4:-63061945 | None:intergenic |
| AACAGAAGCTGAGATGTTAC+AGG | 0.432352 | 5_4:-63060584 | None:intergenic |
| TTTAAGCCGAAAAGATATAC+TGG | 0.432733 | 5_4:+63060960 | Msa0863270:CDS |
| ACATAATTCACAGGAGCAAC+TGG | 0.432791 | 5_4:-63062095 | None:intergenic |
| TCTATCAGCTCTTGGCGAAA+AGG | 0.434662 | 5_4:+63059574 | Msa0863270:CDS |
| TCTACACTTCTATCAGCTCT+TGG | 0.437972 | 5_4:+63059566 | Msa0863270:CDS |
| AGCAGAGAAAGCTCGGATAC+TGG | 0.438832 | 5_4:+63061414 | Msa0863270:CDS |
| CTATCAGCTCTTGGCGAAAA+GGG | 0.441089 | 5_4:+63059575 | Msa0863270:CDS |
| GAGAATGGTTACCTGGGTTA+GGG | 0.444225 | 5_4:-63058071 | None:intergenic |
| GCTGGCTTGAGGACTATAAT+CGG | 0.444875 | 5_4:+63061022 | Msa0863270:CDS |
| GCCAGTTAGCGCTGCTAAGA+AGG | 0.445166 | 5_4:+63061953 | Msa0863270:CDS |
| TCAGTTAGAGCAGGAGTGCT+TGG | 0.449739 | 5_4:+63059460 | Msa0863270:CDS |
| GTGTGCAGGCTAAGTTGCTC+TGG | 0.452965 | 5_4:+63059218 | Msa0863270:intron |
| TGCCATGCTTAGGCATGAAC+GGG | 0.453195 | 5_4:+63061689 | Msa0863270:CDS |
| TCATTAGGGTGATGTTGGGA+TGG | 0.454940 | 5_4:-63062165 | None:intergenic |
| TGCTGCAAGAGAGAAGATTA+TGG | 0.455462 | 5_4:+63060855 | Msa0863270:CDS |
| TACTGGACAAGGTTGAGAAA+TGG | 0.459782 | 5_4:+63060977 | Msa0863270:CDS |
| ATATTCTTCAAACTTATTCA+GGG | 0.464033 | 5_4:-63059939 | None:intergenic |
| GCTTTGTTTGGCAGAGTGAC+AGG | 0.467364 | 5_4:+63060098 | Msa0863270:intron |
| AACTGAATTACTGGCTGACA+TGG | 0.467925 | 5_4:+63060906 | Msa0863270:CDS |
| TGGTGAAAGTGACGAGGAAC+GGG | 0.468470 | 5_4:+63059424 | Msa0863270:CDS |
| ATACTGGTAAATAAAATTCC+CGG | 0.469674 | 5_4:+63061430 | Msa0863270:CDS |
| TGAGCTTCAAGAACTTCAAA+AGG | 0.471280 | 5_4:+63059967 | Msa0863270:CDS |
| GCAGAGTGACAGGTTGCAAA+AGG | 0.476336 | 5_4:+63060108 | Msa0863270:intron |
| CATGATCTATGTGCTGTCCT+TGG | 0.481657 | 5_4:+63060154 | Msa0863270:CDS |
| TGCCATAGCTGTTCAAGTGC+TGG | 0.483432 | 5_4:-63059794 | None:intergenic |
| TCAAGAACTTCAAAAGGAAA+AGG | 0.487196 | 5_4:+63059973 | Msa0863270:CDS |
| CATTAGGGTGATGTTGGGAT+GGG | 0.488018 | 5_4:-63062164 | None:intergenic |
| CTTGTAGGAAATATGGGATG+AGG | 0.489586 | 5_4:+63059400 | Msa0863270:intron |
| AACAGTTTCCTTTCCTCTGG+AGG | 0.490807 | 5_4:-63060550 | None:intergenic |
| TGTATTAGTAAAGCTCCAAA+TGG | 0.491268 | 5_4:-63062316 | None:intergenic |
| TGCAGCTTTGGTTGATACAT+TGG | 0.495582 | 5_4:+63061581 | Msa0863270:intron |
| TGCTCTGGATCTGATTGAGC+AGG | 0.502895 | 5_4:+63060633 | Msa0863270:CDS |
| TAGAATCATTCAGGCTTGGA+TGG | 0.504167 | 5_4:-63060207 | None:intergenic |
| TGCTCATATAGAAATAGATT+CGG | 0.505688 | 5_4:+63060831 | Msa0863270:CDS |
| GAGCTTTCTCTGCTCGCTTG+AGG | 0.510478 | 5_4:-63061405 | None:intergenic |
| ATGCAAAACAGGATGACAAC+AGG | 0.511644 | 5_4:+63061353 | Msa0863270:intron |
| TGGAAACAAAGCTCTCATTA+GGG | 0.511967 | 5_4:-63062179 | None:intergenic |
| AGATCCAGAGCAAGGGCACC+AGG | 0.513680 | 5_4:-63060622 | None:intergenic |
| GACATGGCCACATAATTCAC+AGG | 0.513896 | 5_4:-63062104 | None:intergenic |
| TATGGCAACAAAAGGAAGAA+AGG | 0.517548 | 5_4:+63059810 | Msa0863270:CDS |
| TCTATGTGCTGTCCTTGGTA+TGG | 0.521422 | 5_4:+63060159 | Msa0863270:CDS |
| TGAACAGCTATGGCAACAAA+AGG | 0.521810 | 5_4:+63059802 | Msa0863270:CDS |
| CTACAAAGATGAATTGAGGT+TGG | 0.523993 | 5_4:-63062199 | None:intergenic |
| TAATACTTCTGGAACTATCA+AGG | 0.525873 | 5_4:+63059751 | Msa0863270:CDS |
| TGGTTGCCAAAACACGTGCA+TGG | 0.528372 | 5_4:+63061601 | Msa0863270:CDS |
| CCAAGCCTGAATGATTCTAC+TGG | 0.528482 | 5_4:+63060211 | Msa0863270:CDS |
| AGCAGGTCCATATCAAAAGA+TGG | 0.528623 | 5_4:+63062053 | Msa0863270:CDS |
| GATGCTTCTTCAGTTAGAGC+AGG | 0.532796 | 5_4:+63059451 | Msa0863270:CDS |
| GCTCTCATTAGGGTGATGTT+GGG | 0.532878 | 5_4:-63062169 | None:intergenic |
| ATGCCATGCTTAGGCATGAA+CGG | 0.537364 | 5_4:+63061688 | Msa0863270:CDS |
| TTGGTGAAAGTGACGAGGAA+CGG | 0.538594 | 5_4:+63059423 | Msa0863270:CDS |
| CATGTGTTCTCTCCAATAAG+AGG | 0.538884 | 5_4:-63059272 | None:intergenic |
| GCTTAAAGCAAGCAGGATGA+AGG | 0.542110 | 5_4:+63060762 | Msa0863270:CDS |
| TTGAACATGCTGCAAAGTCA+AGG | 0.542624 | 5_4:+63059501 | Msa0863270:CDS |
| CTTCTCAATTAATTGATCTG+TGG | 0.545500 | 5_4:+63060512 | Msa0863270:CDS |
| CCAGTAGAATCATTCAGGCT+TGG | 0.546540 | 5_4:-63060211 | None:intergenic |
| AAGTTGCTCTGGAACTTCAA+TGG | 0.546855 | 5_4:+63059229 | Msa0863270:exon |
| GAACTGTTCTGAGCTGTGTA+TGG | 0.547260 | 5_4:+63062285 | Msa0863270:three_prime_UTR |
| GGTTGCCAAAACACGTGCAT+GGG | 0.547396 | 5_4:+63061602 | Msa0863270:CDS |
| TTCCCGTTCATGCCTAAGCA+TGG | 0.548978 | 5_4:-63061691 | None:intergenic |
| TCAAGCGAGCAGAGAAAGCT+CGG | 0.552310 | 5_4:+63061407 | Msa0863270:CDS |
| TTCCTTGTTGAAGAAGCTGC+AGG | 0.552930 | 5_4:+63059298 | Msa0863270:CDS |
| CTGAGATGTTACAGGTAACA+TGG | 0.553383 | 5_4:-63060576 | None:intergenic |
| GTTCAAAACCCAGCCCTGCT+AGG | 0.553563 | 5_4:+63061931 | Msa0863270:CDS |
| GGAGCTTTACTAATACATGT+TGG | 0.553604 | 5_4:+63062322 | Msa0863270:three_prime_UTR |
| CACCAGCACTTGAACAGCTA+TGG | 0.556593 | 5_4:+63059792 | Msa0863270:CDS |
| CCGAAAAGATATACTGGACA+AGG | 0.560452 | 5_4:+63060966 | Msa0863270:CDS |
| ATGCTCATCAAAATGGAAGC+AGG | 0.564607 | 5_4:+63062036 | Msa0863270:CDS |
| CTGGCTTGAGGACTATAATC+GGG | 0.565872 | 5_4:+63061023 | Msa0863270:CDS |
| TAAGCAATGAAACTCTAGCT+AGG | 0.569751 | 5_4:+63060251 | Msa0863270:CDS |
| CAGCATGTGAAGAAGAGAGC+TGG | 0.571216 | 5_4:+63061004 | Msa0863270:CDS |
| TGGATACTCCTCCAGAGGAA+AGG | 0.571507 | 5_4:+63060542 | Msa0863270:CDS |
| TAGATGAATATGCCATGCTT+AGG | 0.573007 | 5_4:+63061679 | Msa0863270:CDS |
| CATGGCATATTCATCTAACA+TGG | 0.574080 | 5_4:-63061673 | None:intergenic |
| GATATGTCATTCACATATGA+CGG | 0.574192 | 5_4:+63061636 | Msa0863270:CDS |
| TAGGAAATATGGGATGAGGT+TGG | 0.576351 | 5_4:+63059404 | Msa0863270:intron |
| TTGACCAGCTTAAAGCAAGC+AGG | 0.578831 | 5_4:+63060755 | Msa0863270:CDS |
| TGAAGAAGAGAGCTGGCTTG+AGG | 0.585193 | 5_4:+63061011 | Msa0863270:CDS |
| GCTCAATCAGATCCAGAGCA+AGG | 0.588196 | 5_4:-63060630 | None:intergenic |
| AGGTCTGATTCATCAACTGC+AGG | 0.591067 | 5_4:-63059914 | None:intergenic |
| AAATATGTGGAGAGATAACT+GGG | 0.595369 | 5_4:+63059870 | Msa0863270:CDS |
| CTCAATCAGATCCAGAGCAA+GGG | 0.597501 | 5_4:-63060629 | None:intergenic |
| CAGCGCTAACTGGCCTAGCA+GGG | 0.597807 | 5_4:-63061944 | None:intergenic |
| AACGCTACAAAGATGAATTG+AGG | 0.599640 | 5_4:-63062203 | None:intergenic |
| ATGTGTTCTCTCCAATAAGA+GGG | 0.599871 | 5_4:-63059271 | None:intergenic |
| TGAACATGCTGCAAAGTCAA+GGG | 0.603606 | 5_4:+63059502 | Msa0863270:CDS |
| CTTGGATGTGTACAAGAGAA+AGG | 0.603877 | 5_4:+63059478 | Msa0863270:CDS |
| TCATCTAACATGGCAAGAAG+AGG | 0.607995 | 5_4:-63061663 | None:intergenic |
| CGTGCTAATGGAGGAGCCAA+CGG | 0.609438 | 5_4:+63061987 | Msa0863270:CDS |
| TACCTGCAGCTTCTTCAACA+AGG | 0.618085 | 5_4:-63059300 | None:intergenic |
| GGTGGCCCTCGTGCTAATGG+AGG | 0.622142 | 5_4:+63061978 | Msa0863270:CDS |
| TTAAGCGATAGCCGTCGGCT+AGG | 0.622863 | 5_4:-63062014 | None:intergenic |
| ATGTCAGCCAGTAATTCAGT+TGG | 0.624296 | 5_4:-63060904 | None:intergenic |
| TTGGCTCCTCCATTAGCACG+AGG | 0.625844 | 5_4:-63061984 | None:intergenic |
| ATTTCAGGAGCAGCAAAGCA+CGG | 0.626904 | 5_4:+63061890 | Msa0863270:CDS |
| CTTCTTTAGTACAGTAACTG+AGG | 0.629711 | 5_4:+63060183 | Msa0863270:CDS |
| AGTTGCTCCTGTGAATTATG+TGG | 0.632255 | 5_4:+63062097 | Msa0863270:CDS |
| GTTAGCGCTGCTAAGAAGGT+AGG | 0.647545 | 5_4:+63061957 | Msa0863270:CDS |
| CCGTCGGCTAGGAGTACCGT+TGG | 0.648858 | 5_4:-63062003 | None:intergenic |
| AACAGGTATAATGCAAGCAG+AGG | 0.650748 | 5_4:+63061370 | Msa0863270:CDS |
| GAGCATTAAGCGATAGCCGT+CGG | 0.654471 | 5_4:-63062019 | None:intergenic |
| TCTAATGGATACTCCTCCAG+AGG | 0.660216 | 5_4:+63060537 | Msa0863270:CDS |
| TGGGTTCAGTACCAGAAACG+TGG | 0.662305 | 5_4:-63062145 | None:intergenic |
| TGGCTCCTCCATTAGCACGA+GGG | 0.664829 | 5_4:-63061983 | None:intergenic |
| CTTATTGGAGAGAACACATG+TGG | 0.664987 | 5_4:+63059275 | Msa0863270:CDS |
| TAAGTGACAAGTAATTAGAG+AGG | 0.666851 | 5_4:+63062263 | Msa0863270:three_prime_UTR |
| AACTTCACAAACCCTAACCC+AGG | 0.674699 | 5_4:+63058060 | Msa0863270:five_prime_UTR |
| GGGTTCAGTACCAGAAACGT+GGG | 0.683944 | 5_4:-63062144 | None:intergenic |
| TACTAAAGAAGTCCATACCA+AGG | 0.685608 | 5_4:-63060171 | None:intergenic |
| AGCGCTGCTAAGAAGGTAGG+TGG | 0.685968 | 5_4:+63061960 | Msa0863270:CDS |
| TGAGGTTGGTGAAAGTGACG+AGG | 0.718708 | 5_4:+63059418 | Msa0863270:CDS |
| CCAACGGTACTCCTAGCCGA+CGG | 0.772977 | 5_4:+63062003 | Msa0863270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATAATTTAGAAATTTTTT+TGG | + | chr5_4:63058445-63058464 | Msa0863270:intron | 10.0% |
| !!! | TGATTTTTTTTTTTTTTTTG+TGG | + | chr5_4:63059195-63059214 | Msa0863270:intron | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGT+GGG | + | chr5_4:63059196-63059215 | Msa0863270:intron | 10.0% |
| !! | TATATTAGATTAGATTAGAT+TGG | - | chr5_4:63057932-63057951 | None:intergenic | 15.0% |
| !!! | TGATTTTTATATGCAATTAA+TGG | + | chr5_4:63058394-63058413 | Msa0863270:intron | 15.0% |
| !! | AAATGAATTCAAAATGATAA+AGG | - | chr5_4:63060428-63060447 | None:intergenic | 15.0% |
| !!! | TTATTTTGTTCTTTTTATGA+AGG | + | chr5_4:63060711-63060730 | Msa0863270:intron | 15.0% |
| !! | TTAAATCCAAAATGATATAT+TGG | - | chr5_4:63061315-63061334 | None:intergenic | 15.0% |
| !!! | TCATTTTGTTTTTCTTTGTT+TGG | + | chr5_4:63058251-63058270 | Msa0863270:intron | 20.0% |
| !! | TTATGGTTATATATGCTTAA+TGG | + | chr5_4:63058345-63058364 | Msa0863270:intron | 20.0% |
| !! | AAAACTAACAAATTAAAGCA+AGG | - | chr5_4:63058487-63058506 | None:intergenic | 20.0% |
| !!! | GTTAGTTTTATGTATTCATA+TGG | + | chr5_4:63058498-63058517 | Msa0863270:intron | 20.0% |
| !!! | ATGTTATCTTTATTTCTTGT+AGG | + | chr5_4:63059385-63059404 | Msa0863270:intron | 20.0% |
| !!! | TTTATTTCTTGTAGGAAATA+TGG | + | chr5_4:63059393-63059412 | Msa0863270:intron | 20.0% |
| !!! | TTATTTCTTGTAGGAAATAT+GGG | + | chr5_4:63059394-63059413 | Msa0863270:intron | 20.0% |
| !! | ATATTCTTCAAACTTATTCA+GGG | - | chr5_4:63059942-63059961 | None:intergenic | 20.0% |
| !! | TAATATGTTAGCATAAGTTA+TGG | - | chr5_4:63060694-63060713 | None:intergenic | 20.0% |
| !! | TTAATAATAACAGTATCTGA+TGG | - | chr5_4:63061481-63061500 | None:intergenic | 20.0% |
| !!! | ATATTACTAGTTACTGTTTT+AGG | + | chr5_4:63062229-63062248 | Msa0863270:three_prime_UTR | 20.0% |
| !! | TCTTTTTGCTTACTTCTTAA+TGG | + | chr5_4:63058226-63058245 | Msa0863270:intron | 25.0% |
| !! | ATTGTCTACTATTTTCTTGT+TGG | + | chr5_4:63058608-63058627 | Msa0863270:intron | 25.0% |
| ! | AAATTCTACATCTGATTCTA+GGG | - | chr5_4:63058687-63058706 | None:intergenic | 25.0% |
| ! | AAAATTCTACATCTGATTCT+AGG | - | chr5_4:63058688-63058707 | None:intergenic | 25.0% |
| ! | CAAAAGACAAAAAGAAAAAG+AGG | - | chr5_4:63058714-63058733 | None:intergenic | 25.0% |
| ! | AAACTATGCAAAATCATGAT+GGG | - | chr5_4:63058789-63058808 | None:intergenic | 25.0% |
| ! | AAAACTATGCAAAATCATGA+TGG | - | chr5_4:63058790-63058809 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTGTAAAATCACC+TGG | + | chr5_4:63058803-63058822 | Msa0863270:intron | 25.0% |
| ! | ACTAGTATACAATGTGAATT+CGG | - | chr5_4:63058895-63058914 | None:intergenic | 25.0% |
| ! | TCACATTGTATACTAGTATA+TGG | + | chr5_4:63058898-63058917 | Msa0863270:intron | 25.0% |
| ! | AAAGACAAAAAAAGCAAAAG+AGG | - | chr5_4:63058980-63058999 | None:intergenic | 25.0% |
| !! | TTATACAGTAACTTCGTTTT+TGG | + | chr5_4:63059009-63059028 | Msa0863270:intron | 25.0% |
| !! | TTGGTATAAAGATCAGTTTT+TGG | + | chr5_4:63059028-63059047 | Msa0863270:intron | 25.0% |
| !! | AAAGATGAGTTTGTTTATGA+CGG | + | chr5_4:63059063-63059082 | Msa0863270:intron | 25.0% |
| !! | AAGAGATTTTTCTATCTGTT+GGG | + | chr5_4:63059152-63059171 | Msa0863270:intron | 25.0% |
| ! | TCACAGATTCAAAAAATATG+TGG | + | chr5_4:63059857-63059876 | Msa0863270:CDS | 25.0% |
| ! | GATATTCTTCAAACTTATTC+AGG | - | chr5_4:63059943-63059962 | None:intergenic | 25.0% |
| !! | TCAAAAGGAAAAGGTAATTT+TGG | + | chr5_4:63059982-63060001 | Msa0863270:intron | 25.0% |
| ! | GTTAGGTAAATGATATCAAA+TGG | - | chr5_4:63060053-63060072 | None:intergenic | 25.0% |
| !!! | TTTTCTTACATTGCTTTGTT+TGG | + | chr5_4:63060086-63060105 | Msa0863270:intron | 25.0% |
| ! | TTAATTGAGAAGCTAATTCT+TGG | - | chr5_4:63060504-63060523 | None:intergenic | 25.0% |
| !! | CATCTGAAGTTTAAAAGTTT+GGG | + | chr5_4:63060666-63060685 | Msa0863270:intron | 25.0% |
| ! | TGCTCATATAGAAATAGATT+CGG | + | chr5_4:63060831-63060850 | Msa0863270:CDS | 25.0% |
| !! | AAGCTAAAACTTGGTAATTT+CGG | - | chr5_4:63061248-63061267 | None:intergenic | 25.0% |
| !! | GTTTGTCCAATATATCATTT+TGG | + | chr5_4:63061306-63061325 | Msa0863270:intron | 25.0% |
| ! | ATACTGGTAAATAAAATTCC+CGG | + | chr5_4:63061430-63061449 | Msa0863270:CDS | 25.0% |
| ! | ACAAAAAGATGCTACATTAT+TGG | + | chr5_4:63061528-63061547 | Msa0863270:intron | 25.0% |
| !! | AGAATTAACATCGTTTCTTT+TGG | + | chr5_4:63061552-63061571 | Msa0863270:intron | 25.0% |
| ! | CATATCAAAAGATGGAAAAA+GGG | + | chr5_4:63062061-63062080 | Msa0863270:CDS | 25.0% |
| !! | TGTATGGTATATTTTCCATT+TGG | + | chr5_4:63062301-63062320 | Msa0863270:three_prime_UTR | 25.0% |
| !! | CCGTATATTTTCATACTAAA+GGG | - | chr5_4:63062363-63062382 | None:intergenic | 25.0% |
| ! | CCCTTTAGTATGAAAATATA+CGG | + | chr5_4:63062360-63062379 | Msa0863270:three_prime_UTR | 25.0% |
| !! | ACCGTATATTTTCATACTAA+AGG | - | chr5_4:63062364-63062383 | None:intergenic | 25.0% |
| AAAGAAGAAGTAGATCTTAG+AGG | - | chr5_4:63058132-63058151 | None:intergenic | 30.0% | |
| CATAATTGAATGCACAACTA+AGG | - | chr5_4:63058330-63058349 | None:intergenic | 30.0% | |
| CTTAGTTGTGCATTCAATTA+TGG | + | chr5_4:63058328-63058347 | Msa0863270:intron | 30.0% | |
| !!! | GCTTTGTTTTAGTGCATTTT+TGG | + | chr5_4:63058733-63058752 | Msa0863270:intron | 30.0% |
| !! | TTAGTGCATTTTTGGATTTG+CGG | + | chr5_4:63058741-63058760 | Msa0863270:intron | 30.0% |
| ! | GAAGAGATTTTTCTATCTGT+TGG | + | chr5_4:63059151-63059170 | Msa0863270:intron | 30.0% |
| !! | ATAGTTCCAGAAGTATTATC+AGG | - | chr5_4:63059749-63059768 | None:intergenic | 30.0% |
| !! | TAATACTTCTGGAACTATCA+AGG | + | chr5_4:63059751-63059770 | Msa0863270:CDS | 30.0% |
| ACAAAAGGAAGAAAGGATAA+AGG | + | chr5_4:63059817-63059836 | Msa0863270:CDS | 30.0% | |
| AAAATATGTGGAGAGATAAC+TGG | + | chr5_4:63059869-63059888 | Msa0863270:CDS | 30.0% | |
| AAATATGTGGAGAGATAACT+GGG | + | chr5_4:63059870-63059889 | Msa0863270:CDS | 30.0% | |
| TCAAGAACTTCAAAAGGAAA+AGG | + | chr5_4:63059973-63059992 | Msa0863270:CDS | 30.0% | |
| GCGACTAGATGATATAATAT+TGG | - | chr5_4:63060017-63060036 | None:intergenic | 30.0% | |
| ! | AGTTTCATTGCTTATGCTTT+TGG | - | chr5_4:63060245-63060264 | None:intergenic | 30.0% |
| TGAAAGAAGATAAAAAGCAG+AGG | + | chr5_4:63060296-63060315 | Msa0863270:CDS | 30.0% | |
| AATTTACTTCCAAGTGTGAT+AGG | - | chr5_4:63060403-63060422 | None:intergenic | 30.0% | |
| !! | TCTGATTGACTTTTAGTCTA+TGG | + | chr5_4:63060447-63060466 | Msa0863270:intron | 30.0% |
| CTTCTCAATTAATTGATCTG+TGG | + | chr5_4:63060512-63060531 | Msa0863270:CDS | 30.0% | |
| AATTGATCTGTGGAATCTAA+TGG | + | chr5_4:63060522-63060541 | Msa0863270:CDS | 30.0% | |
| ! | CCAAACTTTTAAACTTCAGA+TGG | - | chr5_4:63060668-63060687 | None:intergenic | 30.0% |
| ! | CCATCTGAAGTTTAAAAGTT+TGG | + | chr5_4:63060665-63060684 | Msa0863270:intron | 30.0% |
| !! | ATTATGGCATTGATTGATTC+TGG | + | chr5_4:63060871-63060890 | Msa0863270:CDS | 30.0% |
| TTTAAGCCGAAAAGATATAC+TGG | + | chr5_4:63060960-63060979 | Msa0863270:CDS | 30.0% | |
| ACTGATAGACTATAGAAGAA+AGG | - | chr5_4:63061187-63061206 | None:intergenic | 30.0% | |
| ! | ACTTGGTAATTTCGGAAATA+TGG | - | chr5_4:63061240-63061259 | None:intergenic | 30.0% |
| AATAAAATTCCCGGTATGTA+TGG | + | chr5_4:63061439-63061458 | Msa0863270:intron | 30.0% | |
| ATAATAACAGTATCTGATGG+TGG | - | chr5_4:63061478-63061497 | None:intergenic | 30.0% | |
| GATATGTCATTCACATATGA+CGG | + | chr5_4:63061636-63061655 | Msa0863270:CDS | 30.0% | |
| AAGAAGAAAAACGAAGAATG+AGG | + | chr5_4:63061712-63061731 | Msa0863270:CDS | 30.0% | |
| AGAAGAAAAACGAAGAATGA+GGG | + | chr5_4:63061713-63061732 | Msa0863270:CDS | 30.0% | |
| TGACTGATTATCGAATTAAC+TGG | + | chr5_4:63061763-63061782 | Msa0863270:intron | 30.0% | |
| !!! | TTTTACTGACTCATTTACTC+TGG | + | chr5_4:63061840-63061859 | Msa0863270:intron | 30.0% |
| TTTCTTCTGATCCTATAAAG+TGG | - | chr5_4:63061871-63061890 | None:intergenic | 30.0% | |
| ATAGGATCAGAAGAAATTTC+AGG | + | chr5_4:63061875-63061894 | Msa0863270:intron | 30.0% | |
| ! | CCTTTTTCCATCTTTTGATA+TGG | - | chr5_4:63062063-63062082 | None:intergenic | 30.0% |
| CCATATCAAAAGATGGAAAA+AGG | + | chr5_4:63062060-63062079 | Msa0863270:CDS | 30.0% | |
| TAAGTGACAAGTAATTAGAG+AGG | + | chr5_4:63062263-63062282 | Msa0863270:three_prime_UTR | 30.0% | |
| TGTATTAGTAAAGCTCCAAA+TGG | - | chr5_4:63062319-63062338 | None:intergenic | 30.0% | |
| TGAGTATAGATCAAAGGAAG+AGG | - | chr5_4:63058107-63058126 | None:intergenic | 35.0% | |
| GAGGTATGAGTATAGATCAA+AGG | - | chr5_4:63058113-63058132 | None:intergenic | 35.0% | |
| TAATCAAAGTCGCTGTTGAA+AGG | - | chr5_4:63058307-63058326 | None:intergenic | 35.0% | |
| ATATGGATAATTCAGTGCAC+TGG | + | chr5_4:63058515-63058534 | Msa0863270:intron | 35.0% | |
| !!! | TTTTGAGTTTGCTTTGACTG+TGG | + | chr5_4:63058564-63058583 | Msa0863270:intron | 35.0% |
| ! | TTTGACTGGTCAAAGACTAT+GGG | - | chr5_4:63058648-63058667 | None:intergenic | 35.0% |
| CAAGATTTATCCGCTATGTA+GGG | - | chr5_4:63059109-63059128 | None:intergenic | 35.0% | |
| ACAAGATTTATCCGCTATGT+AGG | - | chr5_4:63059110-63059129 | None:intergenic | 35.0% | |
| !!! | TTTTCTATCTGTTGGGTTGA+TGG | + | chr5_4:63059159-63059178 | Msa0863270:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGGTGTGC+AGG | + | chr5_4:63059204-63059223 | Msa0863270:intron | 35.0% |
| ATGTGTTCTCTCCAATAAGA+GGG | - | chr5_4:63059274-63059293 | None:intergenic | 35.0% | |
| ! | CATTAGATGCACATGACTTT+TGG | + | chr5_4:63059350-63059369 | Msa0863270:intron | 35.0% |
| !!! | CACATGACTTTTGGATTAGT+AGG | + | chr5_4:63059359-63059378 | Msa0863270:intron | 35.0% |
| TGATGTACGCTTCTGATAAA+AGG | - | chr5_4:63059640-63059659 | None:intergenic | 35.0% | |
| TATGGCAACAAAAGGAAGAA+AGG | + | chr5_4:63059810-63059829 | Msa0863270:CDS | 35.0% | |
| TGAGCTTCAAGAACTTCAAA+AGG | + | chr5_4:63059967-63059986 | Msa0863270:CDS | 35.0% | |
| AAAACTGTCGATGAACTGTT+AGG | - | chr5_4:63060070-63060089 | None:intergenic | 35.0% | |
| TACTAAAGAAGTCCATACCA+AGG | - | chr5_4:63060174-63060193 | None:intergenic | 35.0% | |
| CTTCTTTAGTACAGTAACTG+AGG | + | chr5_4:63060183-63060202 | Msa0863270:CDS | 35.0% | |
| TAAGCAATGAAACTCTAGCT+AGG | + | chr5_4:63060251-63060270 | Msa0863270:CDS | 35.0% | |
| ! | TCTTTTTATGAAGGCTGAAG+TGG | + | chr5_4:63060720-63060739 | Msa0863270:intron | 35.0% |
| CATTGAACCAACTGAATTAC+TGG | + | chr5_4:63060897-63060916 | Msa0863270:CDS | 35.0% | |
| ! | CCTTGTCCAGTATATCTTTT+CGG | - | chr5_4:63060969-63060988 | None:intergenic | 35.0% |
| GTAATTTCGGAAATATGGCA+AGG | - | chr5_4:63061235-63061254 | None:intergenic | 35.0% | |
| CTTGCAGTAAAGCTAAAACT+TGG | - | chr5_4:63061257-63061276 | None:intergenic | 35.0% | |
| CTTACACAACAATGCAAAAC+AGG | + | chr5_4:63061342-63061361 | Msa0863270:intron | 35.0% | |
| TGGTTTCATTCCATACATAC+CGG | - | chr5_4:63061452-63061471 | None:intergenic | 35.0% | |
| CATGGCATATTCATCTAACA+TGG | - | chr5_4:63061676-63061695 | None:intergenic | 35.0% | |
| TAGATGAATATGCCATGCTT+AGG | + | chr5_4:63061679-63061698 | Msa0863270:CDS | 35.0% | |
| GTTTCACTGGTATGATGATT+AGG | + | chr5_4:63061739-63061758 | Msa0863270:intron | 35.0% | |
| TCGCTTAATGCTCATCAAAA+TGG | + | chr5_4:63062029-63062048 | Msa0863270:CDS | 35.0% | |
| TGGAAACAAAGCTCTCATTA+GGG | - | chr5_4:63062182-63062201 | None:intergenic | 35.0% | |
| TTGGAAACAAAGCTCTCATT+AGG | - | chr5_4:63062183-63062202 | None:intergenic | 35.0% | |
| CTACAAAGATGAATTGAGGT+TGG | - | chr5_4:63062202-63062221 | None:intergenic | 35.0% | |
| AACGCTACAAAGATGAATTG+AGG | - | chr5_4:63062206-63062225 | None:intergenic | 35.0% | |
| GGAGCTTTACTAATACATGT+TGG | + | chr5_4:63062322-63062341 | Msa0863270:three_prime_UTR | 35.0% | |
| ATTTGGAAGAAGCTACGATT+TGG | - | chr5_4:63062417-63062436 | None:intergenic | 35.0% | |
| AGAAGAGAGAATGGTTACCT+GGG | - | chr5_4:63058080-63058099 | None:intergenic | 40.0% | |
| AAGAAGAGAGAATGGTTACC+TGG | - | chr5_4:63058081-63058100 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAAGAGAGAA+TGG | - | chr5_4:63058089-63058108 | None:intergenic | 40.0% | |
| ! | CTTTGACTGGTCAAAGACTA+TGG | - | chr5_4:63058649-63058668 | None:intergenic | 40.0% |
| TGAAAACTAGCGACTTTGAC+TGG | - | chr5_4:63058662-63058681 | None:intergenic | 40.0% | |
| AAACGCTGCATCTCATTCTA+GGG | - | chr5_4:63058950-63058969 | None:intergenic | 40.0% | |
| AAAACGCTGCATCTCATTCT+AGG | - | chr5_4:63058951-63058970 | None:intergenic | 40.0% | |
| ATTTATCCGCTATGTAGGGT+CGG | - | chr5_4:63059105-63059124 | None:intergenic | 40.0% | |
| !! | AAGTTGCTCTGGAACTTCAA+TGG | + | chr5_4:63059229-63059248 | Msa0863270:exon | 40.0% |
| !!! | AGGGTTTTGAGCTTCAGTTA+CGG | - | chr5_4:63059255-63059274 | None:intergenic | 40.0% |
| GAAGCTCAAAACCCTCTTAT+TGG | + | chr5_4:63059260-63059279 | Msa0863270:CDS | 40.0% | |
| CATGTGTTCTCTCCAATAAG+AGG | - | chr5_4:63059275-63059294 | None:intergenic | 40.0% | |
| CTTATTGGAGAGAACACATG+TGG | + | chr5_4:63059275-63059294 | Msa0863270:CDS | 40.0% | |
| CTTGTAGGAAATATGGGATG+AGG | + | chr5_4:63059400-63059419 | Msa0863270:intron | 40.0% | |
| TAGGAAATATGGGATGAGGT+TGG | + | chr5_4:63059404-63059423 | Msa0863270:intron | 40.0% | |
| CTTGGATGTGTACAAGAGAA+AGG | + | chr5_4:63059478-63059497 | Msa0863270:CDS | 40.0% | |
| TTGAACATGCTGCAAAGTCA+AGG | + | chr5_4:63059501-63059520 | Msa0863270:CDS | 40.0% | |
| TGAACATGCTGCAAAGTCAA+GGG | + | chr5_4:63059502-63059521 | Msa0863270:CDS | 40.0% | |
| TCTACACTTCTATCAGCTCT+TGG | + | chr5_4:63059566-63059585 | Msa0863270:CDS | 40.0% | |
| TGAACAGCTATGGCAACAAA+AGG | + | chr5_4:63059802-63059821 | Msa0863270:CDS | 40.0% | |
| CAACTGCAGGTACATCATTA+AGG | - | chr5_4:63059904-63059923 | None:intergenic | 40.0% | |
| CTTCAAACTTATTCAGGGTC+AGG | - | chr5_4:63059937-63059956 | None:intergenic | 40.0% | |
| TAGAATCATTCAGGCTTGGA+TGG | - | chr5_4:63060210-63060229 | None:intergenic | 40.0% | |
| TAAAAAGCAGAGGTTGCACA+AGG | + | chr5_4:63060306-63060325 | Msa0863270:CDS | 40.0% | |
| ATATCCATGCCTATCACACT+TGG | + | chr5_4:63060391-63060410 | Msa0863270:intron | 40.0% | |
| TCAAACAGTTTCCTTTCCTC+TGG | - | chr5_4:63060556-63060575 | None:intergenic | 40.0% | |
| CTGAGATGTTACAGGTAACA+TGG | - | chr5_4:63060579-63060598 | None:intergenic | 40.0% | |
| AACAGAAGCTGAGATGTTAC+AGG | - | chr5_4:63060587-63060606 | None:intergenic | 40.0% | |
| ! | GTTGATGAAGTCACTATTCC+TGG | + | chr5_4:63060604-63060623 | Msa0863270:CDS | 40.0% |
| TGCTGCAAGAGAGAAGATTA+TGG | + | chr5_4:63060855-63060874 | Msa0863270:CDS | 40.0% | |
| ATGTCAGCCAGTAATTCAGT+TGG | - | chr5_4:63060907-63060926 | None:intergenic | 40.0% | |
| ! | AACTGAATTACTGGCTGACA+TGG | + | chr5_4:63060906-63060925 | Msa0863270:CDS | 40.0% |
| TCGGCTTAAAGCTTCTTCTT+TGG | - | chr5_4:63060950-63060969 | None:intergenic | 40.0% | |
| CCGAAAAGATATACTGGACA+AGG | + | chr5_4:63060966-63060985 | Msa0863270:CDS | 40.0% | |
| TACTGGACAAGGTTGAGAAA+TGG | + | chr5_4:63060977-63060996 | Msa0863270:CDS | 40.0% | |
| ! | TTTTTCTGTGTCCGTGTTGT+TGG | + | chr5_4:63061068-63061087 | Msa0863270:intron | 40.0% |
| !! | TTGTTGGTTGTGCACAGTTT+TGG | + | chr5_4:63061084-63061103 | Msa0863270:intron | 40.0% |
| ! | TGCAAATTGACTCAGTTCAG+AGG | - | chr5_4:63061160-63061179 | None:intergenic | 40.0% |
| ATGCAAAACAGGATGACAAC+AGG | + | chr5_4:63061353-63061372 | Msa0863270:intron | 40.0% | |
| AACAGGTATAATGCAAGCAG+AGG | + | chr5_4:63061370-63061389 | Msa0863270:CDS | 40.0% | |
| GGTTTCATTCCATACATACC+GGG | - | chr5_4:63061451-63061470 | None:intergenic | 40.0% | |
| TGTATCAACCAAAGCTGCAT+AGG | - | chr5_4:63061580-63061599 | None:intergenic | 40.0% | |
| ! | TGCAGCTTTGGTTGATACAT+TGG | + | chr5_4:63061581-63061600 | Msa0863270:intron | 40.0% |
| TCATCTAACATGGCAAGAAG+AGG | - | chr5_4:63061666-63061685 | None:intergenic | 40.0% | |
| AGAATGAGGGTAAGTTTCAC+TGG | + | chr5_4:63061726-63061745 | Msa0863270:intron | 40.0% | |
| CTCTGGACTTTCCACTTTAT+AGG | + | chr5_4:63061857-63061876 | Msa0863270:intron | 40.0% | |
| ATGCTCATCAAAATGGAAGC+AGG | + | chr5_4:63062036-63062055 | Msa0863270:CDS | 40.0% | |
| AGCAGGTCCATATCAAAAGA+TGG | + | chr5_4:63062053-63062072 | Msa0863270:CDS | 40.0% | |
| ACATAATTCACAGGAGCAAC+TGG | - | chr5_4:63062098-63062117 | None:intergenic | 40.0% | |
| AGTTGCTCCTGTGAATTATG+TGG | + | chr5_4:63062097-63062116 | Msa0863270:CDS | 40.0% | |
| ! | AGCAGCATCTTCTTTTGACA+TGG | - | chr5_4:63062123-63062142 | None:intergenic | 40.0% |
| AACTTCACAAACCCTAACCC+AGG | + | chr5_4:63058060-63058079 | Msa0863270:five_prime_UTR | 45.0% | |
| GAGAATGGTTACCTGGGTTA+GGG | - | chr5_4:63058074-63058093 | None:intergenic | 45.0% | |
| AGAGAATGGTTACCTGGGTT+AGG | - | chr5_4:63058075-63058094 | None:intergenic | 45.0% | |
| !! | GTGCATTTTTGGATTTGCGG+TGG | + | chr5_4:63058744-63058763 | Msa0863270:intron | 45.0% |
| !! | GCGGTGGTTTGTTGAAATCA+TGG | + | chr5_4:63058760-63058779 | Msa0863270:intron | 45.0% |
| TGCTGAAATCACAGTGAACC+AGG | - | chr5_4:63058824-63058843 | None:intergenic | 45.0% | |
| TTCCTTGTTGAAGAAGCTGC+AGG | + | chr5_4:63059298-63059317 | Msa0863270:CDS | 45.0% | |
| TACCTGCAGCTTCTTCAACA+AGG | - | chr5_4:63059303-63059322 | None:intergenic | 45.0% | |
| TTGGTGAAAGTGACGAGGAA+CGG | + | chr5_4:63059423-63059442 | Msa0863270:CDS | 45.0% | |
| GATGCTTCTTCAGTTAGAGC+AGG | + | chr5_4:63059451-63059470 | Msa0863270:CDS | 45.0% | |
| TCTATCAGCTCTTGGCGAAA+AGG | + | chr5_4:63059574-63059593 | Msa0863270:CDS | 45.0% | |
| CTATCAGCTCTTGGCGAAAA+GGG | + | chr5_4:63059575-63059594 | Msa0863270:CDS | 45.0% | |
| TCGCAGCCTGATAATACTTC+TGG | + | chr5_4:63059740-63059759 | Msa0863270:intron | 45.0% | |
| AGGTCTGATTCATCAACTGC+AGG | - | chr5_4:63059917-63059936 | None:intergenic | 45.0% | |
| CATGATCTATGTGCTGTCCT+TGG | + | chr5_4:63060154-63060173 | Msa0863270:CDS | 45.0% | |
| TCTATGTGCTGTCCTTGGTA+TGG | + | chr5_4:63060159-63060178 | Msa0863270:CDS | 45.0% | |
| CCAGTAGAATCATTCAGGCT+TGG | - | chr5_4:63060214-63060233 | None:intergenic | 45.0% | |
| CCAAGCCTGAATGATTCTAC+TGG | + | chr5_4:63060211-63060230 | Msa0863270:CDS | 45.0% | |
| GCACACCAGTAGAATCATTC+AGG | - | chr5_4:63060219-63060238 | None:intergenic | 45.0% | |
| ACTTCCAAGTGTGATAGGCA+TGG | - | chr5_4:63060398-63060417 | None:intergenic | 45.0% | |
| GCTAATTCTTGGAGCTGCAA+TGG | - | chr5_4:63060493-63060512 | None:intergenic | 45.0% | |
| ! | TCTAATGGATACTCCTCCAG+AGG | + | chr5_4:63060537-63060556 | Msa0863270:CDS | 45.0% |
| AACAGTTTCCTTTCCTCTGG+AGG | - | chr5_4:63060553-63060572 | None:intergenic | 45.0% | |
| CTCAATCAGATCCAGAGCAA+GGG | - | chr5_4:63060632-63060651 | None:intergenic | 45.0% | |
| TTGACCAGCTTAAAGCAAGC+AGG | + | chr5_4:63060755-63060774 | Msa0863270:CDS | 45.0% | |
| ! | TCATCCTGCTTGCTTTAAGC+TGG | - | chr5_4:63060762-63060781 | None:intergenic | 45.0% |
| GCTTAAAGCAAGCAGGATGA+AGG | + | chr5_4:63060762-63060781 | Msa0863270:CDS | 45.0% | |
| !! | GCTGGCTTGAGGACTATAAT+CGG | + | chr5_4:63061022-63061041 | Msa0863270:CDS | 45.0% |
| ! | CTGGCTTGAGGACTATAATC+GGG | + | chr5_4:63061023-63061042 | Msa0863270:CDS | 45.0% |
| GGACACAGAAAAACGCACAA+GGG | - | chr5_4:63061061-63061080 | None:intergenic | 45.0% | |
| ACTGTGCACAACCAACAACA+CGG | - | chr5_4:63061082-63061101 | None:intergenic | 45.0% | |
| !! | ACAGTATCTGATGGTGGTTG+TGG | - | chr5_4:63061472-63061491 | None:intergenic | 45.0% |
| !!! | TTTTGGTGCCTATGCAGCTT+TGG | + | chr5_4:63061569-63061588 | Msa0863270:intron | 45.0% |
| ATGCCATGCTTAGGCATGAA+CGG | + | chr5_4:63061688-63061707 | Msa0863270:CDS | 45.0% | |
| ATTTCAGGAGCAGCAAAGCA+CGG | + | chr5_4:63061890-63061909 | Msa0863270:CDS | 45.0% | |
| GACATGGCCACATAATTCAC+AGG | - | chr5_4:63062107-63062126 | None:intergenic | 45.0% | |
| CATTAGGGTGATGTTGGGAT+GGG | - | chr5_4:63062167-63062186 | None:intergenic | 45.0% | |
| TCATTAGGGTGATGTTGGGA+TGG | - | chr5_4:63062168-63062187 | None:intergenic | 45.0% | |
| GCTCTCATTAGGGTGATGTT+GGG | - | chr5_4:63062172-63062191 | None:intergenic | 45.0% | |
| AGCTCTCATTAGGGTGATGT+TGG | - | chr5_4:63062173-63062192 | None:intergenic | 45.0% | |
| ! | GAACTGTTCTGAGCTGTGTA+TGG | + | chr5_4:63062285-63062304 | Msa0863270:three_prime_UTR | 45.0% |
| ATGTAGCCGACCCTACATAG+CGG | + | chr5_4:63059096-63059115 | Msa0863270:intron | 50.0% | |
| !! | TGAGGTTGGTGAAAGTGACG+AGG | + | chr5_4:63059418-63059437 | Msa0863270:CDS | 50.0% |
| TGGTGAAAGTGACGAGGAAC+GGG | + | chr5_4:63059424-63059443 | Msa0863270:CDS | 50.0% | |
| !! | TCAGTTAGAGCAGGAGTGCT+TGG | + | chr5_4:63059460-63059479 | Msa0863270:CDS | 50.0% |
| CACCAGCACTTGAACAGCTA+TGG | + | chr5_4:63059792-63059811 | Msa0863270:CDS | 50.0% | |
| TGCCATAGCTGTTCAAGTGC+TGG | - | chr5_4:63059797-63059816 | None:intergenic | 50.0% | |
| !! | GCTTTGTTTGGCAGAGTGAC+AGG | + | chr5_4:63060098-63060117 | Msa0863270:intron | 50.0% |
| GCAGAGTGACAGGTTGCAAA+AGG | + | chr5_4:63060108-63060127 | Msa0863270:intron | 50.0% | |
| TGGATACTCCTCCAGAGGAA+AGG | + | chr5_4:63060542-63060561 | Msa0863270:CDS | 50.0% | |
| GCTCAATCAGATCCAGAGCA+AGG | - | chr5_4:63060633-63060652 | None:intergenic | 50.0% | |
| ! | TGCTCTGGATCTGATTGAGC+AGG | + | chr5_4:63060633-63060652 | Msa0863270:CDS | 50.0% |
| CAGCATGTGAAGAAGAGAGC+TGG | + | chr5_4:63061004-63061023 | Msa0863270:CDS | 50.0% | |
| !! | TGAAGAAGAGAGCTGGCTTG+AGG | + | chr5_4:63061011-63061030 | Msa0863270:CDS | 50.0% |
| CGGACACAGAAAAACGCACA+AGG | - | chr5_4:63061062-63061081 | None:intergenic | 50.0% | |
| !! | GTGCACAGTTTTGGTGAGAG+AGG | + | chr5_4:63061093-63061112 | Msa0863270:intron | 50.0% |
| TCAAGCGAGCAGAGAAAGCT+CGG | + | chr5_4:63061407-63061426 | Msa0863270:CDS | 50.0% | |
| AGCAGAGAAAGCTCGGATAC+TGG | + | chr5_4:63061414-63061433 | Msa0863270:CDS | 50.0% | |
| TGGTTGCCAAAACACGTGCA+TGG | + | chr5_4:63061601-63061620 | Msa0863270:CDS | 50.0% | |
| GGTTGCCAAAACACGTGCAT+GGG | + | chr5_4:63061602-63061621 | Msa0863270:CDS | 50.0% | |
| ! | CTCTTCCCATGCACGTGTTT+TGG | - | chr5_4:63061610-63061629 | None:intergenic | 50.0% |
| TGCCATGCTTAGGCATGAAC+GGG | + | chr5_4:63061689-63061708 | Msa0863270:CDS | 50.0% | |
| TTCCCGTTCATGCCTAAGCA+TGG | - | chr5_4:63061694-63061713 | None:intergenic | 50.0% | |
| TTTGAACCAAAGGGGGCTTC+TGG | - | chr5_4:63061918-63061937 | None:intergenic | 50.0% | |
| !!! | GCTGGGTTTTGAACCAAAGG+GGG | - | chr5_4:63061925-63061944 | None:intergenic | 50.0% |
| !!! | GGCTGGGTTTTGAACCAAAG+GGG | - | chr5_4:63061926-63061945 | None:intergenic | 50.0% |
| !!! | GGGCTGGGTTTTGAACCAAA+GGG | - | chr5_4:63061927-63061946 | None:intergenic | 50.0% |
| !!! | AGGGCTGGGTTTTGAACCAA+AGG | - | chr5_4:63061928-63061947 | None:intergenic | 50.0% |
| ACCTTCTTAGCAGCGCTAAC+TGG | - | chr5_4:63061957-63061976 | None:intergenic | 50.0% | |
| GTTAGCGCTGCTAAGAAGGT+AGG | + | chr5_4:63061957-63061976 | Msa0863270:CDS | 50.0% | |
| GAGCATTAAGCGATAGCCGT+CGG | - | chr5_4:63062022-63062041 | None:intergenic | 50.0% | |
| GGGTTCAGTACCAGAAACGT+GGG | - | chr5_4:63062147-63062166 | None:intergenic | 50.0% | |
| TGGGTTCAGTACCAGAAACG+TGG | - | chr5_4:63062148-63062167 | None:intergenic | 50.0% | |
| GTGTGCAGGCTAAGTTGCTC+TGG | + | chr5_4:63059218-63059237 | Msa0863270:intron | 55.0% | |
| CTTGGCGAAAAGGGCTTTGC+TGG | + | chr5_4:63059584-63059603 | Msa0863270:CDS | 55.0% | |
| TATTCCTGGTGCCCTTGCTC+TGG | + | chr5_4:63060618-63060637 | Msa0863270:CDS | 55.0% | |
| GAGCTTTCTCTGCTCGCTTG+AGG | - | chr5_4:63061408-63061427 | None:intergenic | 55.0% | |
| GTTCAAAACCCAGCCCTGCT+AGG | + | chr5_4:63061931-63061950 | Msa0863270:CDS | 55.0% | |
| GCCAGTTAGCGCTGCTAAGA+AGG | + | chr5_4:63061953-63061972 | Msa0863270:CDS | 55.0% | |
| AGCGCTGCTAAGAAGGTAGG+TGG | + | chr5_4:63061960-63061979 | Msa0863270:CDS | 55.0% | |
| TGGCTCCTCCATTAGCACGA+GGG | - | chr5_4:63061986-63062005 | None:intergenic | 55.0% | |
| TTGGCTCCTCCATTAGCACG+AGG | - | chr5_4:63061987-63062006 | None:intergenic | 55.0% | |
| CGTGCTAATGGAGGAGCCAA+CGG | + | chr5_4:63061987-63062006 | Msa0863270:CDS | 55.0% | |
| ! | TTAAGCGATAGCCGTCGGCT+AGG | - | chr5_4:63062017-63062036 | None:intergenic | 55.0% |
| ! | GATGCTGCTTCCCACGTTTC+TGG | + | chr5_4:63062134-63062153 | Msa0863270:CDS | 55.0% |
| !! | AGATCCAGAGCAAGGGCACC+AGG | - | chr5_4:63060625-63060644 | None:intergenic | 60.0% |
| ACGGAACCAGAAGCCCCCTT+TGG | + | chr5_4:63061909-63061928 | Msa0863270:CDS | 60.0% | |
| ! | CTAACTGGCCTAGCAGGGCT+GGG | - | chr5_4:63061942-63061961 | None:intergenic | 60.0% |
| ! | CAGCGCTAACTGGCCTAGCA+GGG | - | chr5_4:63061947-63061966 | None:intergenic | 60.0% |
| GTAGGTGGCCCTCGTGCTAA+TGG | + | chr5_4:63061975-63061994 | Msa0863270:CDS | 60.0% | |
| CCAACGGTACTCCTAGCCGA+CGG | + | chr5_4:63062003-63062022 | Msa0863270:CDS | 60.0% | |
| ! | GCTAACTGGCCTAGCAGGGC+TGG | - | chr5_4:63061943-63061962 | None:intergenic | 65.0% |
| ! | GCAGCGCTAACTGGCCTAGC+AGG | - | chr5_4:63061948-63061967 | None:intergenic | 65.0% |
| GGTGGCCCTCGTGCTAATGG+AGG | + | chr5_4:63061978-63061997 | Msa0863270:CDS | 65.0% | |
| !! | CCGTCGGCTAGGAGTACCGT+TGG | - | chr5_4:63062006-63062025 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 63057831 | 63062451 | 63057831 | ID=Msa0863270;Name=Msa0863270 |
| chr5_4 | mRNA | 63057831 | 63062451 | 63057831 | ID=Msa0863270-mRNA-1;Parent=Msa0863270;Name=Msa0863270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=242|1|1|1|0.8|0.81|11|267|583 |
| chr5_4 | exon | 63057831 | 63057921 | 63057831 | ID=Msa0863270-mRNA-1:exon:19787;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63057953 | 63058081 | 63057953 | ID=Msa0863270-mRNA-1:exon:19788;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63059226 | 63059319 | 63059226 | ID=Msa0863270-mRNA-1:exon:19789;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63059407 | 63059610 | 63059407 | ID=Msa0863270-mRNA-1:exon:19790;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63059746 | 63059994 | 63059746 | ID=Msa0863270-mRNA-1:exon:19791;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63060112 | 63060327 | 63060112 | ID=Msa0863270-mRNA-1:exon:19792;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63060499 | 63060654 | 63060499 | ID=Msa0863270-mRNA-1:exon:19793;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63060733 | 63061044 | 63060733 | ID=Msa0863270-mRNA-1:exon:19794;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63061364 | 63061451 | 63061364 | ID=Msa0863270-mRNA-1:exon:19795;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63061586 | 63061734 | 63061586 | ID=Msa0863270-mRNA-1:exon:19796;Parent=Msa0863270-mRNA-1 |
| chr5_4 | exon | 63061879 | 63062451 | 63061879 | ID=Msa0863270-mRNA-1:exon:19797;Parent=Msa0863270-mRNA-1 |
| chr5_4 | five_prime_UTR | 63057831 | 63057921 | 63057831 | ID=Msa0863270-mRNA-1:five_prime_utr;Parent=Msa0863270-mRNA-1 |
| chr5_4 | five_prime_UTR | 63057953 | 63058081 | 63057953 | ID=Msa0863270-mRNA-1:five_prime_utr;Parent=Msa0863270-mRNA-1 |
| chr5_4 | five_prime_UTR | 63059226 | 63059247 | 63059226 | ID=Msa0863270-mRNA-1:five_prime_utr;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63059248 | 63059319 | 63059248 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63059407 | 63059610 | 63059407 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63059746 | 63059994 | 63059746 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63060112 | 63060327 | 63060112 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63060499 | 63060654 | 63060499 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63060733 | 63061044 | 63060733 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63061364 | 63061451 | 63061364 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63061586 | 63061734 | 63061586 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | CDS | 63061879 | 63062184 | 63061879 | ID=Msa0863270-mRNA-1:cds;Parent=Msa0863270-mRNA-1 |
| chr5_4 | three_prime_UTR | 63062185 | 63062451 | 63062185 | ID=Msa0863270-mRNA-1:three_prime_utr;Parent=Msa0863270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
