Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780180 | sp|P52424|PUR5_VIGUN | 78.880 | 393 | 72 | 5 | 1 | 388 | 1 | 387 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780180 | B7FJ14 | 94.162 | 394 | 14 | 4 | 1 | 389 | 1 | 390 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0780180 | Msa0863290 | 0.826446 | 2.701523e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780180 | MtrunA17_Chr8g0384411 | 94.162 | 394 | 14 | 4 | 1 | 389 | 1 | 390 | 0.0 | 706 |
| Msa0780180 | MtrunA17_Chr5g0444911 | 92.105 | 114 | 9 | 0 | 276 | 389 | 40 | 153 | 1.73e-71 | 221 |
| Msa0780180 | MtrunA17_Chr5g0444901 | 76.923 | 65 | 8 | 2 | 43 | 107 | 1 | 58 | 1.45e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780180 | AT3G55010.2 | 71.579 | 380 | 94 | 5 | 10 | 388 | 22 | 388 | 0.0 | 516 |
| Msa0780180 | AT3G55010.1 | 71.579 | 380 | 94 | 5 | 10 | 388 | 22 | 388 | 0.0 | 516 |
Find 119 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5_2:+61888544 | Msa0780180:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5_2:+61887448 | Msa0780180:intron |
| TGAAACCGCCACCAGTAATA+TGG | 0.229484 | 5_2:-61888725 | None:intergenic |
| GAGAGAAGTGTAGGCTAGTT+AGG | 0.237931 | 5_2:-61886012 | None:intergenic |
| ATGCATTATATTCATATCTT+TGG | 0.241957 | 5_2:+61889263 | Msa0780180:three_prime_UTR |
| GTGATTGTAGCGGTGCATTT+AGG | 0.292293 | 5_2:-61886132 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5_2:+61887149 | Msa0780180:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5_2:+61887283 | Msa0780180:CDS |
| GTTGCTGTTAGAGCTGAATT+AGG | 0.320323 | 5_2:+61886243 | Msa0780180:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5_2:-61888771 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5_2:+61887148 | Msa0780180:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5_2:-61888569 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5_2:+61887130 | Msa0780180:CDS |
| AAGGGAATTGCCCATATTAC+TGG | 0.366271 | 5_2:+61888714 | Msa0780180:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5_2:-61886334 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5_2:+61887460 | Msa0780180:CDS |
| TTTCCTTCTTCTTTCCGAAC+AGG | 0.376866 | 5_2:+61885899 | Msa0780180:five_prime_UTR |
| TTTAACAAAGCAATGAGTTT+CGG | 0.377479 | 5_2:+61886063 | Msa0780180:exon |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5_2:+61888571 | Msa0780180:CDS |
| GTTTAGCTTGTTTATAACTT+TGG | 0.389752 | 5_2:+61889127 | Msa0780180:exon |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5_2:+61888373 | Msa0780180:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5_2:-61888370 | None:intergenic |
| GCTGCGCGTGCGTGCCTGTT+CGG | 0.412520 | 5_2:-61885913 | None:intergenic |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5_2:+61886342 | Msa0780180:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5_2:+61888343 | Msa0780180:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5_2:+61887085 | Msa0780180:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5_2:+61887490 | Msa0780180:CDS |
| ATCTTAGTGGTTGTGCGGTT+GGG | 0.428572 | 5_2:+61888281 | Msa0780180:CDS |
| TGATGTGGATGTTGCTGAAC+AGG | 0.430758 | 5_2:+61887351 | Msa0780180:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5_2:+61887322 | Msa0780180:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5_2:+61886345 | Msa0780180:CDS |
| CACAGTTTGCGCATTGCAAT+CGG | 0.436228 | 5_2:+61886156 | Msa0780180:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5_2:-61889029 | None:intergenic |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5_2:-61886346 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5_2:+61886333 | Msa0780180:CDS |
| GATCTTAGTGGTTGTGCGGT+TGG | 0.461826 | 5_2:+61888280 | Msa0780180:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5_2:-61887324 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5_2:-61888530 | None:intergenic |
| TCATACATTAGAAATCTAGA+AGG | 0.469537 | 5_2:-61889192 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5_2:+61887282 | Msa0780180:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5_2:+61888696 | Msa0780180:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5_2:+61888310 | Msa0780180:CDS |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5_2:+61888695 | Msa0780180:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5_2:+61887159 | Msa0780180:CDS |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5_2:+61888235 | Msa0780180:intron |
| AGAGAAGTGTAGGCTAGTTA+GGG | 0.479945 | 5_2:-61886011 | None:intergenic |
| GGTTTAACTGATGCAGCTGC+AGG | 0.484130 | 5_2:-61886111 | None:intergenic |
| GGCCGGTGACGGTGGTGGAA+AGG | 0.486973 | 5_2:-61885940 | None:intergenic |
| CTCATTGCTTTGTTAAAGAG+TGG | 0.492636 | 5_2:-61886057 | None:intergenic |
| ACGACGGCCGGTGACGGTGG+TGG | 0.495841 | 5_2:-61885945 | None:intergenic |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5_2:+61886336 | Msa0780180:CDS |
| GCTAATAGAATACTTGAAAA+CGG | 0.500599 | 5_2:+61889038 | Msa0780180:CDS |
| GAAACCGCCACCAGTAATAT+GGG | 0.506817 | 5_2:-61888724 | None:intergenic |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5_2:+61889089 | Msa0780180:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5_2:+61886327 | Msa0780180:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5_2:-61886345 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5_2:+61887101 | Msa0780180:CDS |
| CTGCCTCTGGAGTGACTACA+AGG | 0.520084 | 5_2:-61889016 | None:intergenic |
| GAAGGTGAGTATGATCTTAG+TGG | 0.521805 | 5_2:+61888268 | Msa0780180:CDS |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5_2:+61886263 | Msa0780180:CDS |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5_2:+61886320 | Msa0780180:CDS |
| GAAGTGTAGGCTAGTTAGGG+TGG | 0.529150 | 5_2:-61886008 | None:intergenic |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5_2:-61887140 | None:intergenic |
| TGCTACTGGTCACCTTGATG+TGG | 0.532410 | 5_2:+61887336 | Msa0780180:CDS |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5_2:-61888816 | None:intergenic |
| GGCTAGTTAGGGTGGAATAG+AGG | 0.538256 | 5_2:-61886000 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5_2:+61887094 | Msa0780180:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5_2:+61888512 | Msa0780180:CDS |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5_2:+61887100 | Msa0780180:CDS |
| ATTGCCCATATTACTGGTGG+CGG | 0.548526 | 5_2:+61888720 | Msa0780180:CDS |
| ATTGCTTTGTTAAAGAGTGG+TGG | 0.549659 | 5_2:-61886054 | None:intergenic |
| GGAGGGTAGGTCTGCTACAT+CGG | 0.552709 | 5_2:-61889328 | None:intergenic |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5_2:+61889083 | Msa0780180:CDS |
| TCGGATGGAATGCCTTCAGT+TGG | 0.558835 | 5_2:-61889309 | None:intergenic |
| GGTAGGTCTGCTACATCGGA+TGG | 0.562809 | 5_2:-61889324 | None:intergenic |
| ATATATGAAGAGAGAAGTGT+AGG | 0.581180 | 5_2:-61886021 | None:intergenic |
| AGAAGAAGGAAACGCGATGG+TGG | 0.581291 | 5_2:-61885888 | None:intergenic |
| GTGCCTGTTCGGAAAGAAGA+AGG | 0.582283 | 5_2:-61885902 | None:intergenic |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5_2:+61888788 | Msa0780180:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5_2:+61889088 | Msa0780180:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5_2:+61888250 | Msa0780180:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5_2:+61886328 | Msa0780180:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5_2:-61889082 | None:intergenic |
| GTTCAGCAACATCCACATCA+AGG | 0.596378 | 5_2:-61887348 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5_2:+61888358 | Msa0780180:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5_2:+61888787 | Msa0780180:CDS |
| GAAGAAGGAAACGCGATGGT+GGG | 0.598740 | 5_2:-61885887 | None:intergenic |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5_2:+61887285 | Msa0780180:CDS |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5_2:+61889068 | Msa0780180:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5_2:-61888253 | None:intergenic |
| TTTGTTAAAGAGTGGTGGAA+TGG | 0.609455 | 5_2:-61886049 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5_2:-61886289 | None:intergenic |
| GTATAGAAAGATCCAACTGA+AGG | 0.614636 | 5_2:+61889297 | Msa0780180:three_prime_UTR |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5_2:+61886288 | Msa0780180:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5_2:-61889078 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5_2:-61888529 | None:intergenic |
| GTTAGAGCTGAATTAGGTCA+AGG | 0.619293 | 5_2:+61886249 | Msa0780180:CDS |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5_2:+61888688 | Msa0780180:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5_2:+61888687 | Msa0780180:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5_2:+61887498 | Msa0780180:CDS |
| CGATTGCAATGCGCAAACTG+TGG | 0.623109 | 5_2:-61886155 | None:intergenic |
| GATTGCAATGCGCAAACTGT+GGG | 0.627668 | 5_2:-61886154 | None:intergenic |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5_2:+61887284 | Msa0780180:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5_2:+61888485 | Msa0780180:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5_2:+61888689 | Msa0780180:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5_2:+61888328 | Msa0780180:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5_2:+61888684 | Msa0780180:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5_2:+61886270 | Msa0780180:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5_2:+61887108 | Msa0780180:CDS |
| GGAATTGCCCATATTACTGG+TGG | 0.664696 | 5_2:+61888717 | Msa0780180:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5_2:+61887493 | Msa0780180:CDS |
| TAGTTAGGGTGGAATAGAGG+CGG | 0.672414 | 5_2:-61885997 | None:intergenic |
| GAAAGAAGAAGGAAACGCGA+TGG | 0.679295 | 5_2:-61885891 | None:intergenic |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5_2:-61888344 | None:intergenic |
| GGTCCTTGTAGTCACTCCAG+AGG | 0.685578 | 5_2:+61889013 | Msa0780180:CDS |
| CAAACTGTGGGTGATTGTAG+CGG | 0.693570 | 5_2:-61886142 | None:intergenic |
| GTATGATCTTAGTGGTTGTG+CGG | 0.694362 | 5_2:+61888276 | Msa0780180:CDS |
| AGTTTGCGCATTGCAATCGG+CGG | 0.720569 | 5_2:+61886159 | Msa0780180:CDS |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5_2:+61888327 | Msa0780180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5_2:61888436-61888455 | Msa0780180:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5_2:61888464-61888483 | Msa0780180:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5_2:61886787-61886806 | None:intergenic | 15.0% |
| !!! | ATAATGCATTAAAATTTTGA+GGG | - | chr5_2:61889252-61889271 | None:intergenic | 15.0% |
| !!! | TATAATGCATTAAAATTTTG+AGG | - | chr5_2:61889253-61889272 | None:intergenic | 15.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5_2:61886823-61886842 | Msa0780180:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5_2:61886931-61886950 | Msa0780180:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5_2:61887037-61887056 | Msa0780180:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5_2:61887051-61887070 | None:intergenic | 20.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5_2:61887316-61887335 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5_2:61887865-61887884 | Msa0780180:intron | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5_2:61888216-61888235 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5_2:61888896-61888915 | Msa0780180:intron | 20.0% |
| !! | ATGCATTATATTCATATCTT+TGG | + | chr5_2:61889263-61889282 | Msa0780180:three_prime_UTR | 20.0% |
| ! | TTTAACAAAGCAATGAGTTT+CGG | + | chr5_2:61886063-61886082 | Msa0780180:exon | 25.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5_2:61886379-61886398 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5_2:61886380-61886399 | None:intergenic | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5_2:61886418-61886437 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5_2:61886427-61886446 | Msa0780180:intron | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5_2:61886756-61886775 | None:intergenic | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5_2:61886757-61886776 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5_2:61886935-61886954 | None:intergenic | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5_2:61886822-61886841 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5_2:61886832-61886851 | Msa0780180:intron | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5_2:61886883-61886902 | None:intergenic | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5_2:61886884-61886903 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5_2:61886888-61886907 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5_2:61886935-61886954 | Msa0780180:intron | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5_2:61887249-61887268 | Msa0780180:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5_2:61887460-61887479 | Msa0780180:CDS | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5_2:61887516-61887535 | Msa0780180:intron | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5_2:61887578-61887597 | Msa0780180:intron | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5_2:61887579-61887598 | Msa0780180:intron | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5_2:61887583-61887602 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5_2:61887860-61887879 | None:intergenic | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5_2:61887858-61887877 | Msa0780180:intron | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5_2:61887911-61887930 | Msa0780180:intron | 25.0% |
| ! | GACATGTTCAATTGTTTATT+TGG | + | chr5_2:61887938-61887957 | Msa0780180:intron | 25.0% |
| ! | GTTCAATTGTTTATTTGGAT+AGG | + | chr5_2:61887943-61887962 | Msa0780180:intron | 25.0% |
| ! | GGTTTGAATAAAATGTCAAT+AGG | - | chr5_2:61888035-61888054 | None:intergenic | 25.0% |
| ! | TAAGATTGCAATAAGCTAAT+GGG | - | chr5_2:61888057-61888076 | None:intergenic | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5_2:61888058-61888077 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5_2:61888323-61888342 | None:intergenic | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5_2:61888572-61888591 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5_2:61888571-61888590 | Msa0780180:CDS | 25.0% |
| ! | GCTAATAGAATACTTGAAAA+CGG | + | chr5_2:61889038-61889057 | Msa0780180:CDS | 25.0% |
| !!! | GTTTAGCTTGTTTATAACTT+TGG | + | chr5_2:61889127-61889146 | Msa0780180:exon | 25.0% |
| ! | TCATACATTAGAAATCTAGA+AGG | - | chr5_2:61889195-61889214 | None:intergenic | 25.0% |
| !!! | GAGAAATGAGTTTTAAATGA+TGG | + | chr5_2:61889213-61889232 | Msa0780180:three_prime_UTR | 25.0% |
| ! | ATATATGAAGAGAGAAGTGT+AGG | - | chr5_2:61886024-61886043 | None:intergenic | 30.0% |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5_2:61886378-61886397 | None:intergenic | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5_2:61886413-61886432 | None:intergenic | 30.0% | |
| AGCTTATGAAAACAGCTTAT+AGG | + | chr5_2:61886514-61886533 | Msa0780180:intron | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5_2:61886613-61886632 | None:intergenic | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5_2:61886962-61886981 | Msa0780180:intron | 30.0% | |
| AAAAGGAACTAAACAAACGA+GGG | - | chr5_2:61887034-61887053 | None:intergenic | 30.0% | |
| AAAAAGGAACTAAACAAACG+AGG | - | chr5_2:61887035-61887054 | None:intergenic | 30.0% | |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5_2:61887171-61887190 | Msa0780180:intron | 30.0% |
| ! | TTGAAGTGTTTCTGTTACTT+AGG | + | chr5_2:61887219-61887238 | Msa0780180:intron | 30.0% |
| ! | TGAAGTGTTTCTGTTACTTA+GGG | + | chr5_2:61887220-61887239 | Msa0780180:intron | 30.0% |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5_2:61887432-61887451 | None:intergenic | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5_2:61887438-61887457 | None:intergenic | 30.0% | |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5_2:61887438-61887457 | Msa0780180:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5_2:61887448-61887467 | Msa0780180:intron | 30.0% |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5_2:61887534-61887553 | Msa0780180:intron | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5_2:61887663-61887682 | Msa0780180:intron | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5_2:61887664-61887683 | Msa0780180:intron | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5_2:61887754-61887773 | Msa0780180:intron | 30.0% | |
| CATTTAGATAAGCTTGAGTT+GGG | + | chr5_2:61887780-61887799 | Msa0780180:intron | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5_2:61887849-61887868 | Msa0780180:intron | 30.0% | |
| AAGATTGCAATAAGCTAATG+GGG | - | chr5_2:61888056-61888075 | None:intergenic | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5_2:61888310-61888329 | Msa0780180:CDS | 30.0% | |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5_2:61888392-61888411 | Msa0780180:CDS | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5_2:61888396-61888415 | Msa0780180:intron | 30.0% |
| AGACAACTTCAAGATCAAAA+GGG | - | chr5_2:61888646-61888665 | None:intergenic | 30.0% | |
| TTCTATATACAAAGACTCGT+GGG | + | chr5_2:61888788-61888807 | Msa0780180:CDS | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5_2:61888935-61888954 | Msa0780180:intron | 30.0% | |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5_2:61888981-61889000 | Msa0780180:CDS | 30.0% |
| ! | TTTGTTAAAGAGTGGTGGAA+TGG | - | chr5_2:61886052-61886071 | None:intergenic | 35.0% |
| ! | ATTGCTTTGTTAAAGAGTGG+TGG | - | chr5_2:61886057-61886076 | None:intergenic | 35.0% |
| ! | CTCATTGCTTTGTTAAAGAG+TGG | - | chr5_2:61886060-61886079 | None:intergenic | 35.0% |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5_2:61886377-61886396 | None:intergenic | 35.0% | |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5_2:61886818-61886837 | None:intergenic | 35.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5_2:61886880-61886899 | None:intergenic | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5_2:61886963-61886982 | Msa0780180:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5_2:61886991-61887010 | Msa0780180:intron | 35.0% | |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5_2:61887282-61887301 | Msa0780180:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5_2:61887283-61887302 | Msa0780180:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5_2:61887284-61887303 | Msa0780180:CDS | 35.0% |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5_2:61887322-61887341 | Msa0780180:CDS | 35.0% | |
| ! | TATGAGTTGGCAAGAATAGA+CGG | - | chr5_2:61887570-61887589 | None:intergenic | 35.0% |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5_2:61887665-61887684 | Msa0780180:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5_2:61887687-61887706 | Msa0780180:intron | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5_2:61887688-61887707 | Msa0780180:intron | 35.0% | |
| GAAATATATGCGGGAAAAGT+TGG | + | chr5_2:61887697-61887716 | Msa0780180:intron | 35.0% | |
| ! | AGTTGGAGGTATACTTATTG+AGG | + | chr5_2:61887714-61887733 | Msa0780180:intron | 35.0% |
| GCATTTAGATAAGCTTGAGT+TGG | + | chr5_2:61887779-61887798 | Msa0780180:intron | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5_2:61887896-61887915 | None:intergenic | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5_2:61888512-61888531 | Msa0780180:CDS | 35.0% | |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5_2:61888544-61888563 | Msa0780180:CDS | 35.0% |
| GACAACTTCAAGATCAAAAG+GGG | - | chr5_2:61888645-61888664 | None:intergenic | 35.0% | |
| GAGACAACTTCAAGATCAAA+AGG | - | chr5_2:61888647-61888666 | None:intergenic | 35.0% | |
| !!! | GTCTCTCGTCTTTTTGAAAT+AGG | + | chr5_2:61888662-61888681 | Msa0780180:intron | 35.0% |
| CTTCTATATACAAAGACTCG+TGG | + | chr5_2:61888787-61888806 | Msa0780180:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5_2:61888811-61888830 | Msa0780180:CDS | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5_2:61888980-61888999 | Msa0780180:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5_2:61888988-61889007 | Msa0780180:CDS | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5_2:61888992-61889011 | Msa0780180:CDS | 35.0% |
| GTATAGAAAGATCCAACTGA+AGG | + | chr5_2:61889297-61889316 | Msa0780180:three_prime_UTR | 35.0% | |
| TTTCCTTCTTCTTTCCGAAC+AGG | + | chr5_2:61885899-61885918 | Msa0780180:five_prime_UTR | 40.0% | |
| ! | AGAGAAGTGTAGGCTAGTTA+GGG | - | chr5_2:61886014-61886033 | None:intergenic | 40.0% |
| ! | GTTGCTGTTAGAGCTGAATT+AGG | + | chr5_2:61886243-61886262 | Msa0780180:CDS | 40.0% |
| GTTAGAGCTGAATTAGGTCA+AGG | + | chr5_2:61886249-61886268 | Msa0780180:CDS | 40.0% | |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5_2:61886263-61886282 | Msa0780180:CDS | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5_2:61886320-61886339 | Msa0780180:CDS | 40.0% | |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5_2:61886659-61886678 | None:intergenic | 40.0% | |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5_2:61886730-61886749 | Msa0780180:intron | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5_2:61886858-61886877 | None:intergenic | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5_2:61886859-61886878 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5_2:61886860-61886879 | None:intergenic | 40.0% |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5_2:61886949-61886968 | Msa0780180:intron | 40.0% | |
| GAAATTACAGACGGGTAAAC+TGG | + | chr5_2:61886971-61886990 | Msa0780180:intron | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5_2:61886990-61887009 | Msa0780180:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5_2:61886992-61887011 | Msa0780180:intron | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5_2:61886993-61887012 | Msa0780180:intron | 40.0% | |
| !!! | TGATTTGACTTGTTTTGCGC+AGG | + | chr5_2:61887064-61887083 | Msa0780180:intron | 40.0% |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5_2:61887143-61887162 | None:intergenic | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5_2:61887148-61887167 | Msa0780180:CDS | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5_2:61887149-61887168 | Msa0780180:CDS | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5_2:61887159-61887178 | Msa0780180:CDS | 40.0% | |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5_2:61887285-61887304 | Msa0780180:CDS | 40.0% |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5_2:61887327-61887346 | None:intergenic | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5_2:61887490-61887509 | Msa0780180:CDS | 40.0% | |
| ! | ATGAGTTGGCAAGAATAGAC+GGG | - | chr5_2:61887569-61887588 | None:intergenic | 40.0% |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5_2:61887666-61887685 | Msa0780180:intron | 40.0% | |
| ATATATGCGGGAAAAGTTGG+AGG | + | chr5_2:61887700-61887719 | Msa0780180:intron | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5_2:61887763-61887782 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5_2:61888250-61888269 | Msa0780180:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5_2:61888256-61888275 | None:intergenic | 40.0% | |
| GAAGGTGAGTATGATCTTAG+TGG | + | chr5_2:61888268-61888287 | Msa0780180:CDS | 40.0% | |
| GTATGATCTTAGTGGTTGTG+CGG | + | chr5_2:61888276-61888295 | Msa0780180:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5_2:61888327-61888346 | Msa0780180:CDS | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5_2:61888328-61888347 | Msa0780180:CDS | 40.0% | |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5_2:61888358-61888377 | Msa0780180:CDS | 40.0% |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5_2:61888373-61888392 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5_2:61888373-61888392 | Msa0780180:CDS | 40.0% | |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5_2:61888485-61888504 | Msa0780180:intron | 40.0% |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5_2:61888688-61888707 | Msa0780180:CDS | 40.0% | |
| AAGGGAATTGCCCATATTAC+TGG | + | chr5_2:61888714-61888733 | Msa0780180:CDS | 40.0% | |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5_2:61888756-61888775 | Msa0780180:CDS | 40.0% |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5_2:61888762-61888781 | None:intergenic | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5_2:61888762-61888781 | Msa0780180:CDS | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5_2:61888774-61888793 | None:intergenic | 40.0% |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5_2:61888819-61888838 | None:intergenic | 40.0% | |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5_2:61888821-61888840 | Msa0780180:CDS | 40.0% |
| AATTACCTCTCACATTAGGC+TGG | + | chr5_2:61888939-61888958 | Msa0780180:intron | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5_2:61888940-61888959 | Msa0780180:intron | 40.0% | |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5_2:61888987-61889006 | Msa0780180:CDS | 40.0% |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5_2:61889032-61889051 | None:intergenic | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5_2:61889081-61889100 | None:intergenic | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5_2:61889085-61889104 | None:intergenic | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5_2:61889083-61889102 | Msa0780180:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5_2:61889088-61889107 | Msa0780180:CDS | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5_2:61889089-61889108 | Msa0780180:CDS | 40.0% | |
| GAAAGAAGAAGGAAACGCGA+TGG | - | chr5_2:61885894-61885913 | None:intergenic | 45.0% | |
| TAGTTAGGGTGGAATAGAGG+CGG | - | chr5_2:61886000-61886019 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTGTAGGCTAGTT+AGG | - | chr5_2:61886015-61886034 | None:intergenic | 45.0% |
| GTGATTGTAGCGGTGCATTT+AGG | - | chr5_2:61886135-61886154 | None:intergenic | 45.0% | |
| CAAACTGTGGGTGATTGTAG+CGG | - | chr5_2:61886145-61886164 | None:intergenic | 45.0% | |
| GATTGCAATGCGCAAACTGT+GGG | - | chr5_2:61886157-61886176 | None:intergenic | 45.0% | |
| CACAGTTTGCGCATTGCAAT+CGG | + | chr5_2:61886156-61886175 | Msa0780180:CDS | 45.0% | |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5_2:61886270-61886289 | Msa0780180:CDS | 45.0% | |
| ! | CTCATTTTCACGAGTTCACC+AGG | + | chr5_2:61886489-61886508 | Msa0780180:intron | 45.0% |
| !! | GCTGTTTTCATAAGCTAGCC+TGG | - | chr5_2:61886510-61886529 | None:intergenic | 45.0% |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5_2:61886649-61886668 | None:intergenic | 45.0% | |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5_2:61886747-61886766 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5_2:61886748-61886767 | None:intergenic | 45.0% |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5_2:61886749-61886768 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5_2:61886846-61886865 | Msa0780180:intron | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5_2:61886847-61886866 | Msa0780180:intron | 45.0% |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5_2:61887085-61887104 | Msa0780180:intron | 45.0% | |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5_2:61887094-61887113 | Msa0780180:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5_2:61887101-61887120 | Msa0780180:CDS | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5_2:61887130-61887149 | Msa0780180:CDS | 45.0% |
| GTTCAGCAACATCCACATCA+AGG | - | chr5_2:61887351-61887370 | None:intergenic | 45.0% | |
| TGATGTGGATGTTGCTGAAC+AGG | + | chr5_2:61887351-61887370 | Msa0780180:CDS | 45.0% | |
| GGATGTTGCTGAACAGGTAA+TGG | + | chr5_2:61887357-61887376 | Msa0780180:intron | 45.0% | |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5_2:61887373-61887392 | Msa0780180:intron | 45.0% |
| !! | GATAAGCTTGAGTTGGGTAG+AGG | + | chr5_2:61887786-61887805 | Msa0780180:intron | 45.0% |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5_2:61888146-61888165 | None:intergenic | 45.0% | |
| ATCTTAGTGGTTGTGCGGTT+GGG | + | chr5_2:61888281-61888300 | Msa0780180:CDS | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5_2:61888684-61888703 | Msa0780180:CDS | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5_2:61888687-61888706 | Msa0780180:CDS | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5_2:61888689-61888708 | Msa0780180:CDS | 45.0% | |
| GGAATTGCCCATATTACTGG+TGG | + | chr5_2:61888717-61888736 | Msa0780180:CDS | 45.0% | |
| ATTGCCCATATTACTGGTGG+CGG | + | chr5_2:61888720-61888739 | Msa0780180:CDS | 45.0% | |
| GAAACCGCCACCAGTAATAT+GGG | - | chr5_2:61888727-61888746 | None:intergenic | 45.0% | |
| TGAAACCGCCACCAGTAATA+TGG | - | chr5_2:61888728-61888747 | None:intergenic | 45.0% | |
| GAAGAAGGAAACGCGATGGT+GGG | - | chr5_2:61885890-61885909 | None:intergenic | 50.0% | |
| AGAAGAAGGAAACGCGATGG+TGG | - | chr5_2:61885891-61885910 | None:intergenic | 50.0% | |
| GTGCCTGTTCGGAAAGAAGA+AGG | - | chr5_2:61885905-61885924 | None:intergenic | 50.0% | |
| ! | GGCTAGTTAGGGTGGAATAG+AGG | - | chr5_2:61886003-61886022 | None:intergenic | 50.0% |
| ! | GAAGTGTAGGCTAGTTAGGG+TGG | - | chr5_2:61886011-61886030 | None:intergenic | 50.0% |
| GGTTTAACTGATGCAGCTGC+AGG | - | chr5_2:61886114-61886133 | None:intergenic | 50.0% | |
| CGATTGCAATGCGCAAACTG+TGG | - | chr5_2:61886158-61886177 | None:intergenic | 50.0% | |
| AGTTTGCGCATTGCAATCGG+CGG | + | chr5_2:61886159-61886178 | Msa0780180:CDS | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5_2:61886292-61886311 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5_2:61886327-61886346 | Msa0780180:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5_2:61886360-61886379 | Msa0780180:CDS | 50.0% | |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5_2:61887100-61887119 | Msa0780180:CDS | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5_2:61887108-61887127 | Msa0780180:CDS | 50.0% |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5_2:61887336-61887355 | Msa0780180:CDS | 50.0% | |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5_2:61887378-61887397 | Msa0780180:intron | 50.0% |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5_2:61887493-61887512 | Msa0780180:CDS | 50.0% | |
| GACGGGACGGAAAATCCAAT+TGG | - | chr5_2:61887552-61887571 | None:intergenic | 50.0% | |
| GTTGGCAAGAATAGACGGGA+CGG | - | chr5_2:61887565-61887584 | None:intergenic | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5_2:61888235-61888254 | Msa0780180:intron | 50.0% | |
| GATCTTAGTGGTTGTGCGGT+TGG | + | chr5_2:61888280-61888299 | Msa0780180:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5_2:61888695-61888714 | Msa0780180:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5_2:61888696-61888715 | Msa0780180:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5_2:61888947-61888966 | None:intergenic | 50.0% | |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5_2:61889068-61889087 | Msa0780180:CDS | 50.0% | |
| TCGGATGGAATGCCTTCAGT+TGG | - | chr5_2:61889312-61889331 | None:intergenic | 50.0% | |
| AACCTTTCCACCACCGTCAC+CGG | + | chr5_2:61885938-61885957 | Msa0780180:intron | 55.0% | |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5_2:61886288-61886307 | Msa0780180:CDS | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5_2:61886328-61886347 | Msa0780180:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5_2:61887498-61887517 | Msa0780180:CDS | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5_2:61888343-61888362 | Msa0780180:CDS | 55.0% | |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5_2:61888347-61888366 | None:intergenic | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5_2:61888532-61888551 | None:intergenic | 55.0% | |
| GGTCCTTGTAGTCACTCCAG+AGG | + | chr5_2:61889013-61889032 | Msa0780180:CDS | 55.0% | |
| !! | CTGCCTCTGGAGTGACTACA+AGG | - | chr5_2:61889019-61889038 | None:intergenic | 55.0% |
| GGTAGGTCTGCTACATCGGA+TGG | - | chr5_2:61889327-61889346 | None:intergenic | 55.0% | |
| GCCTGAGAGAGGAGAGACGA+CGG | - | chr5_2:61885964-61885983 | None:intergenic | 60.0% | |
| GTGGAATAGAGGCGGCTACG+GGG | - | chr5_2:61885992-61886011 | None:intergenic | 60.0% | |
| GGTGGAATAGAGGCGGCTAC+GGG | - | chr5_2:61885993-61886012 | None:intergenic | 60.0% | |
| GGGTGGAATAGAGGCGGCTA+CGG | - | chr5_2:61885994-61886013 | None:intergenic | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5_2:61886337-61886356 | None:intergenic | 60.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5_2:61886336-61886355 | Msa0780180:CDS | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5_2:61886349-61886368 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5_2:61886739-61886758 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5_2:61888533-61888552 | None:intergenic | 60.0% | |
| GAGAGAGGAGAGACGACGGC+CGG | - | chr5_2:61885960-61885979 | None:intergenic | 65.0% | |
| GCCGTCGTCTCTCCTCTCTC+AGG | + | chr5_2:61885960-61885979 | Msa0780180:intron | 65.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5_2:61886333-61886352 | Msa0780180:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5_2:61886342-61886361 | Msa0780180:CDS | 65.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5_2:61886348-61886367 | None:intergenic | 65.0% | |
| GCTGCGCGTGCGTGCCTGTT+CGG | - | chr5_2:61885916-61885935 | None:intergenic | 70.0% | |
| !! | GGCCGGTGACGGTGGTGGAA+AGG | - | chr5_2:61885943-61885962 | None:intergenic | 70.0% |
| GGAGAGACGACGGCCGGTGA+CGG | - | chr5_2:61885954-61885973 | None:intergenic | 70.0% | |
| !! | ACGGGGTGCTGGCCTGAGAG+AGG | - | chr5_2:61885975-61885994 | None:intergenic | 70.0% |
| TAGAGGCGGCTACGGGGTGC+TGG | - | chr5_2:61885986-61886005 | None:intergenic | 70.0% | |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5_2:61886345-61886364 | Msa0780180:CDS | 70.0% |
| ! | ACGACGGCCGGTGACGGTGG+TGG | - | chr5_2:61885948-61885967 | None:intergenic | 75.0% |
| ! | GAGACGACGGCCGGTGACGG+TGG | - | chr5_2:61885951-61885970 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 61885879 | 61889347 | 61885879 | ID=Msa0780180;Name=Msa0780180 |
| chr5_2 | mRNA | 61885879 | 61889347 | 61885879 | ID=Msa0780180-mRNA-1;Parent=Msa0780180;Name=Msa0780180-mRNA-1;_AED=0.13;_eAED=0.13;_QI=153|1|1|1|0.87|0.77|9|220|389 |
| chr5_2 | exon | 61885879 | 61885953 | 61885879 | ID=Msa0780180-mRNA-1:exon:18191;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61885997 | 61886381 | 61885997 | ID=Msa0780180-mRNA-1:exon:18192;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61887086 | 61887180 | 61887086 | ID=Msa0780180-mRNA-1:exon:18193;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61887271 | 61887372 | 61887271 | ID=Msa0780180-mRNA-1:exon:18194;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61887460 | 61887519 | 61887460 | ID=Msa0780180-mRNA-1:exon:18195;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61888241 | 61888413 | 61888241 | ID=Msa0780180-mRNA-1:exon:18196;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61888490 | 61888592 | 61888490 | ID=Msa0780180-mRNA-1:exon:18197;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61888684 | 61888842 | 61888684 | ID=Msa0780180-mRNA-1:exon:18198;Parent=Msa0780180-mRNA-1 |
| chr5_2 | exon | 61888957 | 61889347 | 61888957 | ID=Msa0780180-mRNA-1:exon:18199;Parent=Msa0780180-mRNA-1 |
| chr5_2 | five_prime_UTR | 61885879 | 61885953 | 61885879 | ID=Msa0780180-mRNA-1:five_prime_utr;Parent=Msa0780180-mRNA-1 |
| chr5_2 | five_prime_UTR | 61885997 | 61886074 | 61885997 | ID=Msa0780180-mRNA-1:five_prime_utr;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61886075 | 61886381 | 61886075 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61887086 | 61887180 | 61887086 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61887271 | 61887372 | 61887271 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61887460 | 61887519 | 61887460 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61888241 | 61888413 | 61888241 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61888490 | 61888592 | 61888490 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61888684 | 61888842 | 61888684 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | CDS | 61888957 | 61889127 | 61888957 | ID=Msa0780180-mRNA-1:cds;Parent=Msa0780180-mRNA-1 |
| chr5_2 | three_prime_UTR | 61889128 | 61889347 | 61889128 | ID=Msa0780180-mRNA-1:three_prime_utr;Parent=Msa0780180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
