Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782450 | XP_003616942.1 | 96.800 | 250 | 6 | 1 | 1 | 250 | 1 | 248 | 2.98e-174 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782450 | G7K7L7 | 96.800 | 250 | 6 | 1 | 1 | 250 | 1 | 248 | 1.42e-174 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0782450 | Msa0860380 | 0.867043 | 1.829875e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782450 | MtrunA17_Chr5g0439521 | 96.800 | 250 | 6 | 1 | 1 | 250 | 1 | 248 | 2.74e-178 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782450 | AT1G05060.1 | 58.268 | 254 | 100 | 3 | 1 | 250 | 1 | 252 | 6.18e-100 | 291 |
Find 55 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCTATCTAAAATTT+TGG | 0.076463 | 5_2:-65432816 | Msa0782450:CDS |
| TAACGGCTTGTTTGGATTCT+TGG | 0.230694 | 5_2:+65435967 | None:intergenic |
| AGAGAGTGTCGTAGAACTTC+TGG | 0.321176 | 5_2:+65435852 | None:intergenic |
| GGTGGTGCTGCAATGGTAAT+TGG | 0.357696 | 5_2:-65433297 | Msa0782450:CDS |
| AGATACAGAAGATCGAAGTT+TGG | 0.358477 | 5_2:+65435752 | None:intergenic |
| GATGCTGCTTTCAACTTCTC+CGG | 0.362635 | 5_2:+65435248 | None:intergenic |
| TCAATTTGCATTGAAAATAG+TGG | 0.369899 | 5_2:-65432745 | Msa0782450:three_prime_UTR |
| CATCATTCTCTGCATCGAAA+TGG | 0.371193 | 5_2:-65435791 | Msa0782450:CDS |
| ATTGCCACTGCAGTTGTATT+CGG | 0.384023 | 5_2:-65433318 | Msa0782450:CDS |
| AAGTTACCTTTGGCGCTAGA+AGG | 0.387475 | 5_2:-65435686 | Msa0782450:intron |
| TCTCTTCCACAAGTTACCTT+TGG | 0.404695 | 5_2:-65435696 | Msa0782450:CDS |
| CACAATTTGTTGCAATAAGA+TGG | 0.407176 | 5_2:-65432534 | None:intergenic |
| TACATTATGCAGCTCTAACT+TGG | 0.413171 | 5_2:+65433263 | None:intergenic |
| TATGTCAAGAAAGTGGCATT+TGG | 0.416481 | 5_2:-65432870 | Msa0782450:CDS |
| CAAAACAAACAATAATAATC+TGG | 0.416877 | 5_2:-65436044 | Msa0782450:five_prime_UTR |
| GATACAGAAGATCGAAGTTT+GGG | 0.419495 | 5_2:+65435753 | None:intergenic |
| CGTTTCGTCTCTGAATAGTT+TGG | 0.431600 | 5_2:+65435824 | None:intergenic |
| TTTCTAGCGGGAAGGTTAGC+AGG | 0.436098 | 5_2:-65436011 | Msa0782450:CDS |
| ATCATTCTCTGCATCGAAAT+GGG | 0.438147 | 5_2:-65435790 | Msa0782450:CDS |
| CGAAGAGGATTGATAGCATC+AGG | 0.449172 | 5_2:+65435729 | None:intergenic |
| CATCTTATTGCAACAAATTG+TGG | 0.468940 | 5_2:+65432535 | None:intergenic |
| GCCTCTGGCTTATGTTGTTG+TGG | 0.484597 | 5_2:-65432688 | Msa0782450:three_prime_UTR |
| TACAGCTAATGAATTGCGTC+AGG | 0.486536 | 5_2:-65435294 | Msa0782450:CDS |
| ATATGAATGTAGTGTGCCTC+TGG | 0.489771 | 5_2:-65432703 | Msa0782450:three_prime_UTR |
| ATGCTGCTTTCAACTTCTCC+GGG | 0.519765 | 5_2:+65435249 | None:intergenic |
| TGCTGCAATGGTAATTGGTA+TGG | 0.525519 | 5_2:-65433292 | Msa0782450:CDS |
| CAAGAAAGTGGCATTTGGAA+AGG | 0.526917 | 5_2:-65432865 | Msa0782450:CDS |
| ATGGTATATGTAGTAAATAA+CGG | 0.531661 | 5_2:-65432623 | Msa0782450:intron |
| ATGGATGACCTCAAAACTAA+AGG | 0.534397 | 5_2:-65433049 | Msa0782450:CDS |
| ATTATGCAGCTCTAACTTGG+AGG | 0.547168 | 5_2:+65433266 | None:intergenic |
| AAGAAAGTGGCATTTGGAAA+GGG | 0.553714 | 5_2:-65432864 | Msa0782450:CDS |
| CTAATGAATTGCGTCAGGAC+CGG | 0.564086 | 5_2:-65435289 | Msa0782450:CDS |
| CTGAGAATATGTCAAGAAAG+TGG | 0.564264 | 5_2:-65432877 | Msa0782450:CDS |
| AAGTTGAAAGCAGCATCTGA+AGG | 0.570779 | 5_2:-65435242 | Msa0782450:CDS |
| AATGAACCTTCTAGCGCCAA+AGG | 0.571487 | 5_2:+65435680 | None:intergenic |
| GAATTGCCTGAAGCAAAACA+TGG | 0.573837 | 5_2:-65435329 | Msa0782450:CDS |
| ACGCAATTCATTAGCTGTAG+AGG | 0.575232 | 5_2:+65435298 | None:intergenic |
| CAAACTATTCAGAGACGAAA+CGG | 0.576652 | 5_2:-65435823 | Msa0782450:CDS |
| TGCAATGGTAATTGGTATGG+TGG | 0.580334 | 5_2:-65433289 | Msa0782450:CDS |
| TCGTCTCTGAATAGTTTGGA+AGG | 0.591010 | 5_2:+65435828 | None:intergenic |
| TGTATTCGGTGGTGCTGCAA+TGG | 0.600855 | 5_2:-65433304 | Msa0782450:CDS |
| TGACCTCAAAACTAAAGGAA+AGG | 0.603490 | 5_2:-65433044 | Msa0782450:CDS |
| GCCACTGCAGTTGTATTCGG+TGG | 0.617882 | 5_2:-65433315 | Msa0782450:CDS |
| AGAGAAACGAAAGCGCGAAG+AGG | 0.618299 | 5_2:+65435714 | None:intergenic |
| GGTTAACATAGACGTCATAC+CGG | 0.620666 | 5_2:+65435270 | None:intergenic |
| AATTGCCTGAAGCAAAACAT+GGG | 0.623883 | 5_2:-65435328 | Msa0782450:CDS |
| CAGCATGTCTGAAAATACAA+AGG | 0.628369 | 5_2:+65432572 | None:intergenic |
| AGTTGAAAGCAGCATCTGAA+GGG | 0.631833 | 5_2:-65435241 | Msa0782450:CDS |
| CTAGCGCCAAAGGTAACTTG+TGG | 0.643943 | 5_2:+65435690 | None:intergenic |
| GTGTCGTTCATCAACAACGT+TGG | 0.664896 | 5_2:+65435902 | None:intergenic |
| ATTGCCTGAAGCAAAACATG+GGG | 0.672964 | 5_2:-65435327 | Msa0782450:CDS |
| GTATGACGTCTATGTTAACC+CGG | 0.686842 | 5_2:-65435267 | Msa0782450:CDS |
| ACCACCGAATACAACTGCAG+TGG | 0.702322 | 5_2:+65433314 | None:intergenic |
| GCCACAACAACATAAGCCAG+AGG | 0.704988 | 5_2:+65432687 | None:intergenic |
| TAGAACTTCTGGAAGCACGT+CGG | 0.734680 | 5_2:+65435863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTCTTTTTATATAT+AGG | + | chr5_2:65434694-65434713 | None:intergenic | 10.0% |
| !! | TATAAAATTGAAAACAAAAT+AGG | + | chr5_2:65435241-65435260 | None:intergenic | 10.0% |
| !! | TGAATTAATGTTTAACTAAA+CGG | + | chr5_2:65433511-65433530 | None:intergenic | 15.0% |
| !! | TTAATTCAATAATTGCTTAA+TGG | - | chr5_2:65433523-65433542 | Msa0782450:intron | 15.0% |
| !! | TAATTCAATAATTGCTTAAT+GGG | - | chr5_2:65433524-65433543 | Msa0782450:intron | 15.0% |
| !!! | ATATAATGTTTTAACAAAAC+AGG | - | chr5_2:65434370-65434389 | Msa0782450:intron | 15.0% |
| !!! | TATAATGTTTTAACAAAACA+GGG | - | chr5_2:65434371-65434390 | Msa0782450:intron | 15.0% |
| !! | TTAGTCTACTTATATAATTA+AGG | + | chr5_2:65435147-65435166 | None:intergenic | 15.0% |
| !! | AAATAGGAATTAGAAAATAT+GGG | + | chr5_2:65435225-65435244 | None:intergenic | 15.0% |
| !! | AAAATAGGAATTAGAAAATA+TGG | + | chr5_2:65435226-65435245 | None:intergenic | 15.0% |
| !!! | TTTGTTTTCAATTTTATAGT+TGG | - | chr5_2:65435243-65435262 | Msa0782450:CDS | 15.0% |
| !!! | AAAAGATCTATCTAAAATTT+TGG | - | chr5_2:65435781-65435800 | Msa0782450:CDS | 15.0% |
| !!! | AAAGATCTATCTAAAATTTT+GGG | - | chr5_2:65435782-65435801 | Msa0782450:CDS | 15.0% |
| !! | CAAAACAAACAATAATAATC+TGG | - | chr5_2:65432553-65432572 | Msa0782450:three_prime_UTR | 20.0% |
| !!! | TTCAATTTCAATTTGATTTC+TGG | - | chr5_2:65433026-65433045 | Msa0782450:CDS | 20.0% |
| !!! | TCAATTTCAATTTGATTTCT+GGG | - | chr5_2:65433027-65433046 | Msa0782450:CDS | 20.0% |
| !! | TGTTTGTAATATCTAAACTA+TGG | - | chr5_2:65433216-65433235 | Msa0782450:intron | 20.0% |
| !!! | TTTTTTGTTTTGAGTGTTTT+AGG | - | chr5_2:65433242-65433261 | Msa0782450:intron | 20.0% |
| !! | TTGAAATAACTTCTACTAAT+TGG | - | chr5_2:65433738-65433757 | Msa0782450:intron | 20.0% |
| !!! | ATAAATGTTGAGATTTTATG+AGG | - | chr5_2:65434071-65434090 | Msa0782450:intron | 20.0% |
| !!! | TAAATGTTGAGATTTTATGA+GGG | - | chr5_2:65434072-65434091 | Msa0782450:intron | 20.0% |
| !!! | TTTTAAATTTATGCTTACTG+TGG | - | chr5_2:65434254-65434273 | Msa0782450:intron | 20.0% |
| !! | AATGGTCATCATTATAATTA+TGG | - | chr5_2:65434546-65434565 | Msa0782450:intron | 20.0% |
| !!! | TTTTTATATATAGGACAAGA+GGG | + | chr5_2:65434685-65434704 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTATAGTTGGAA+AGG | - | chr5_2:65435248-65435267 | Msa0782450:CDS | 20.0% |
| !!! | TTTTCAATGCAAATTGAAAA+AGG | + | chr5_2:65435849-65435868 | None:intergenic | 20.0% |
| !! | ATGGTATATGTAGTAAATAA+CGG | - | chr5_2:65435974-65435993 | Msa0782450:CDS | 20.0% |
| !! | CTTTTGAGCTAATTTTGTAA+CGG | + | chr5_2:65432650-65432669 | None:intergenic | 25.0% |
| ! | GAAAAATTGAGAGAATGATT+GGG | + | chr5_2:65432953-65432972 | None:intergenic | 25.0% |
| ! | TGAAAAATTGAGAGAATGAT+TGG | + | chr5_2:65432954-65432973 | None:intergenic | 25.0% |
| !! | CAATTTTCATTTGTGTTCTA+AGG | - | chr5_2:65432995-65433014 | Msa0782450:CDS | 25.0% |
| !!! | TTATTGATTTTGCGTATGTT+TGG | - | chr5_2:65433050-65433069 | Msa0782450:CDS | 25.0% |
| ! | TTGATAAATTGGGTATTAAG+AGG | - | chr5_2:65433183-65433202 | Msa0782450:intron | 25.0% |
| ! | TGATAAATTGGGTATTAAGA+GGG | - | chr5_2:65433184-65433203 | Msa0782450:intron | 25.0% |
| ! | AGCAATTCTCAATAAAAACA+AGG | - | chr5_2:65433463-65433482 | Msa0782450:intron | 25.0% |
| ! | TCAATAAAAACAAGGTGTAT+GGG | - | chr5_2:65433471-65433490 | Msa0782450:intron | 25.0% |
| ! | TAAGTACTTGTGTAAGTATT+TGG | + | chr5_2:65433698-65433717 | None:intergenic | 25.0% |
| ! | AAACTTATGTATACTAGCTA+TGG | - | chr5_2:65433809-65433828 | Msa0782450:intron | 25.0% |
| ! | AGGATTATCATAGTTTATAG+TGG | + | chr5_2:65433921-65433940 | None:intergenic | 25.0% |
| !! | AAATGTTGAGATTTTATGAG+GGG | - | chr5_2:65434073-65434092 | Msa0782450:intron | 25.0% |
| !! | TGTTCCATTAATTTGAATGA+GGG | - | chr5_2:65434121-65434140 | Msa0782450:intron | 25.0% |
| ! | ATAAATGTGAGGTTTAAACA+GGG | - | chr5_2:65434457-65434476 | Msa0782450:intron | 25.0% |
| !! | CTTTTTATATATAGGACAAG+AGG | + | chr5_2:65434686-65434705 | None:intergenic | 25.0% |
| ! | AAATAAAATAATCAAGTCCG+AGG | - | chr5_2:65434716-65434735 | Msa0782450:intron | 25.0% |
| ! | GAAATGCAATTATTTCACAT+AGG | + | chr5_2:65434811-65434830 | None:intergenic | 25.0% |
| ! | GTGAAATAATTGCATTTCTA+AGG | - | chr5_2:65434813-65434832 | Msa0782450:intron | 25.0% |
| !! | TCTCGTATATAAGAACATTT+TGG | + | chr5_2:65434885-65434904 | None:intergenic | 25.0% |
| ! | ATGTACTAAATATCCCAAAA+TGG | + | chr5_2:65435059-65435078 | None:intergenic | 25.0% |
| !!! | ATTTTGGGATATTTAGTACA+TGG | - | chr5_2:65435058-65435077 | Msa0782450:intron | 25.0% |
| !! | ACTGGATTTTGCAATTTATA+TGG | + | chr5_2:65435487-65435506 | None:intergenic | 25.0% |
| ! | AATTGCAAAATCCAGTTTAT+TGG | - | chr5_2:65435491-65435510 | Msa0782450:intron | 25.0% |
| !!! | TTTTTGATATTCTCAAGTTG+TGG | + | chr5_2:65435590-65435609 | None:intergenic | 25.0% |
| !! | ATTTTGTTCCCATGAAAATA+TGG | - | chr5_2:65435612-65435631 | Msa0782450:intron | 25.0% |
| !! | TTTTGTTCCCATGAAAATAT+GGG | - | chr5_2:65435613-65435632 | Msa0782450:intron | 25.0% |
| !! | AAACTTACCCATATTTTCAT+GGG | + | chr5_2:65435623-65435642 | None:intergenic | 25.0% |
| !! | AAAACTTACCCATATTTTCA+TGG | + | chr5_2:65435624-65435643 | None:intergenic | 25.0% |
| !! | ATGCCAAAACTTTGATTTAT+AGG | - | chr5_2:65435697-65435716 | Msa0782450:CDS | 25.0% |
| ! | TCAATTTGCATTGAAAATAG+TGG | - | chr5_2:65435852-65435871 | Msa0782450:CDS | 25.0% |
| ! | TGGAAAAATGAGTTTTCTAG+CGG | - | chr5_2:65432573-65432592 | Msa0782450:three_prime_UTR | 30.0% |
| !! | TAATTTTGTAACGGCTTGTT+TGG | + | chr5_2:65432641-65432660 | None:intergenic | 30.0% |
| TATGTTTGGTTGTTCTACTT+TGG | - | chr5_2:65433064-65433083 | Msa0782450:intron | 30.0% | |
| CTCTAGATTTGATTCTAACT+AGG | + | chr5_2:65433103-65433122 | None:intergenic | 30.0% | |
| AGCTGCAACTATTGATAAAT+TGG | - | chr5_2:65433172-65433191 | Msa0782450:intron | 30.0% | |
| GCTGCAACTATTGATAAATT+GGG | - | chr5_2:65433173-65433192 | Msa0782450:intron | 30.0% | |
| !!! | TTTGTTTTGAGTGTTTTAGG+TGG | - | chr5_2:65433245-65433264 | Msa0782450:intron | 30.0% |
| !!! | TTGTTTTGAGTGTTTTAGGT+GGG | - | chr5_2:65433246-65433265 | Msa0782450:intron | 30.0% |
| ! | CATTTTCTCATTGTAGGTTA+AGG | - | chr5_2:65433435-65433454 | Msa0782450:intron | 30.0% |
| CTCAATAAAAACAAGGTGTA+TGG | - | chr5_2:65433470-65433489 | Msa0782450:intron | 30.0% | |
| CAATAAAAACAAGGTGTATG+GGG | - | chr5_2:65433472-65433491 | Msa0782450:intron | 30.0% | |
| AATAAAAACAAGGTGTATGG+GGG | - | chr5_2:65433473-65433492 | Msa0782450:intron | 30.0% | |
| GCTGAAAATAGCTTATAGTA+TGG | - | chr5_2:65433657-65433676 | Msa0782450:intron | 30.0% | |
| TCAAGTAAATACTTTGTCAG+AGG | + | chr5_2:65433787-65433806 | None:intergenic | 30.0% | |
| AGATGTAATGTGAAGTTTGA+TGG | + | chr5_2:65433837-65433856 | None:intergenic | 30.0% | |
| AACTTCACATTACATCTCTA+TGG | - | chr5_2:65433840-65433859 | Msa0782450:intron | 30.0% | |
| ACATTAAAGTGTAACGGTAT+AGG | + | chr5_2:65433941-65433960 | None:intergenic | 30.0% | |
| AGCAACACATTAAAGTGTAA+CGG | + | chr5_2:65433947-65433966 | None:intergenic | 30.0% | |
| ! | AATGTTGAGATTTTATGAGG+GGG | - | chr5_2:65434074-65434093 | Msa0782450:intron | 30.0% |
| ! | CTGTTCCATTAATTTGAATG+AGG | - | chr5_2:65434120-65434139 | Msa0782450:intron | 30.0% |
| ACTTCCCTCATTCAAATTAA+TGG | + | chr5_2:65434128-65434147 | None:intergenic | 30.0% | |
| CTAGTTTGAACTTATTGCTA+AGG | - | chr5_2:65434338-65434357 | Msa0782450:intron | 30.0% | |
| GATAAATGTGAGGTTTAAAC+AGG | - | chr5_2:65434456-65434475 | Msa0782450:intron | 30.0% | |
| TAAATGTGAGGTTTAAACAG+GGG | - | chr5_2:65434458-65434477 | Msa0782450:intron | 30.0% | |
| TTACTTCTCTGTTATAAGTC+AGG | - | chr5_2:65434512-65434531 | Msa0782450:intron | 30.0% | |
| TTATACACACTATGCTCTTT+AGG | - | chr5_2:65435007-65435026 | Msa0782450:intron | 30.0% | |
| CATTTGAACAGAAATTTGTG+AGG | + | chr5_2:65435089-65435108 | None:intergenic | 30.0% | |
| CTCACAAATTTCTGTTCAAA+TGG | - | chr5_2:65435087-65435106 | Msa0782450:intron | 30.0% | |
| TTATGTTGTGCTTCAAATTC+AGG | - | chr5_2:65435111-65435130 | Msa0782450:intron | 30.0% | |
| ATAGCGTCAAGAAAAGAATA+AGG | - | chr5_2:65435173-65435192 | Msa0782450:intron | 30.0% | |
| AGTAAGAAGAAACAATACTG+TGG | + | chr5_2:65435416-65435435 | None:intergenic | 30.0% | |
| AGATTAAGAAGCCAATAAAC+TGG | + | chr5_2:65435505-65435524 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCCGTTTTAACAGA+TGG | - | chr5_2:65435529-65435548 | Msa0782450:intron | 30.0% |
| ! | CAGCCTATAAATCAAAGTTT+TGG | + | chr5_2:65435703-65435722 | None:intergenic | 30.0% |
| GCTGAAGAATGAAAATAGTA+TGG | - | chr5_2:65435955-65435974 | Msa0782450:CDS | 30.0% | |
| !! | GGAAAAATGAGTTTTCTAGC+GGG | - | chr5_2:65432574-65432593 | Msa0782450:three_prime_UTR | 35.0% |
| !!! | ACAACGTTGGTTTTTGAGAT+TGG | + | chr5_2:65432685-65432704 | None:intergenic | 35.0% |
| CAAACTATTCAGAGACGAAA+CGG | - | chr5_2:65432774-65432793 | Msa0782450:three_prime_UTR | 35.0% | |
| ATCATTCTCTGCATCGAAAT+GGG | - | chr5_2:65432807-65432826 | Msa0782450:CDS | 35.0% | |
| GATACAGAAGATCGAAGTTT+GGG | + | chr5_2:65432847-65432866 | None:intergenic | 35.0% | |
| AGATACAGAAGATCGAAGTT+TGG | + | chr5_2:65432848-65432867 | None:intergenic | 35.0% | |
| AATTGCCTGAAGCAAAACAT+GGG | - | chr5_2:65433269-65433288 | Msa0782450:CDS | 35.0% | |
| ! | TGCTCTCATTTTCTCATTGT+AGG | - | chr5_2:65433429-65433448 | Msa0782450:intron | 35.0% |
| ! | ATAATTGCTTAATGGGCATG+TGG | - | chr5_2:65433531-65433550 | Msa0782450:intron | 35.0% |
| AACTGTTTCGACGATTGAAT+AGG | - | chr5_2:65433570-65433589 | Msa0782450:intron | 35.0% | |
| ACTGTTTCGACGATTGAATA+GGG | - | chr5_2:65433571-65433590 | Msa0782450:intron | 35.0% | |
| GCTTATAGTATGGTATCCAT+AGG | - | chr5_2:65433667-65433686 | Msa0782450:intron | 35.0% | |
| TAAGTATTTGGAAGAGCCTA+TGG | + | chr5_2:65433686-65433705 | None:intergenic | 35.0% | |
| ! | GTTTTCCATCAACTTTTAGC+TGG | + | chr5_2:65433881-65433900 | None:intergenic | 35.0% |
| GGAAAACTAATTGTGTAGAC+AGG | - | chr5_2:65433894-65433913 | Msa0782450:intron | 35.0% | |
| TGTGTTTCAACTAACCAACT+TGG | - | chr5_2:65434024-65434043 | Msa0782450:intron | 35.0% | |
| TTATGAGGGGGATAACTTAT+TGG | - | chr5_2:65434086-65434105 | Msa0782450:intron | 35.0% | |
| TATGAGGGGGATAACTTATT+GGG | - | chr5_2:65434087-65434106 | Msa0782450:intron | 35.0% | |
| TTTATGCTTACTGTGGCTAT+AGG | - | chr5_2:65434261-65434280 | Msa0782450:intron | 35.0% | |
| TCCTTGTCAATGTTACAGTT+AGG | - | chr5_2:65434307-65434326 | Msa0782450:intron | 35.0% | |
| CCTTGTCAATGTTACAGTTA+GGG | - | chr5_2:65434308-65434327 | Msa0782450:intron | 35.0% | |
| CTTGTCAATGTTACAGTTAG+GGG | - | chr5_2:65434309-65434328 | Msa0782450:intron | 35.0% | |
| CCATTATTCGAAAGTTGTCT+TGG | + | chr5_2:65434419-65434438 | None:intergenic | 35.0% | |
| CCAAGACAACTTTCGAATAA+TGG | - | chr5_2:65434416-65434435 | Msa0782450:intron | 35.0% | |
| ! | ACAACTTTCGAATAATGGAG+AGG | - | chr5_2:65434421-65434440 | Msa0782450:intron | 35.0% |
| ! | TTTCGAATAATGGAGAGGAA+AGG | - | chr5_2:65434426-65434445 | Msa0782450:intron | 35.0% |
| ! | TTCGAATAATGGAGAGGAAA+GGG | - | chr5_2:65434427-65434446 | Msa0782450:intron | 35.0% |
| AGGGAACTAAGATAAATGTG+AGG | - | chr5_2:65434446-65434465 | Msa0782450:intron | 35.0% | |
| !! | AATTGCAGTTGGGTGTTATT+TGG | - | chr5_2:65434482-65434501 | Msa0782450:intron | 35.0% |
| !! | ATTGCAGTTGGGTGTTATTT+GGG | - | chr5_2:65434483-65434502 | Msa0782450:intron | 35.0% |
| ! | TGGCACATATGCTTTTCATT+CGG | - | chr5_2:65434566-65434585 | Msa0782450:intron | 35.0% |
| TGAAACTGGTAAAAACACCA+TGG | - | chr5_2:65434599-65434618 | Msa0782450:intron | 35.0% | |
| GAAACTGGTAAAAACACCAT+GGG | - | chr5_2:65434600-65434619 | Msa0782450:intron | 35.0% | |
| TAAAATAATCAAGTCCGAGG+AGG | - | chr5_2:65434719-65434738 | Msa0782450:intron | 35.0% | |
| TAAGACTTAATGAACCTCCT+CGG | + | chr5_2:65434736-65434755 | None:intergenic | 35.0% | |
| TTGCATGCTATTACTACCTT+CGG | + | chr5_2:65434908-65434927 | None:intergenic | 35.0% | |
| ATGAATAGTGCAACTTCATC+TGG | + | chr5_2:65434960-65434979 | None:intergenic | 35.0% | |
| ACTATGCTCTTTAGGTATCA+AGG | - | chr5_2:65435015-65435034 | Msa0782450:intron | 35.0% | |
| ! | TACATTATGCAGCTCTAACT+TGG | + | chr5_2:65435337-65435356 | None:intergenic | 35.0% |
| AGGTCATCCATCTGTTAAAA+CGG | + | chr5_2:65435539-65435558 | None:intergenic | 35.0% | |
| ATGGATGACCTCAAAACTAA+AGG | - | chr5_2:65435548-65435567 | Msa0782450:intron | 35.0% | |
| TGACCTCAAAACTAAAGGAA+AGG | - | chr5_2:65435553-65435572 | Msa0782450:intron | 35.0% | |
| !!! | CATCCTTTCCTTTAGTTTTG+AGG | + | chr5_2:65435559-65435578 | None:intergenic | 35.0% |
| CTGAGAATATGTCAAGAAAG+TGG | - | chr5_2:65435720-65435739 | Msa0782450:CDS | 35.0% | |
| TATGTCAAGAAAGTGGCATT+TGG | - | chr5_2:65435727-65435746 | Msa0782450:CDS | 35.0% | |
| AAGAAAGTGGCATTTGGAAA+GGG | - | chr5_2:65435733-65435752 | Msa0782450:CDS | 35.0% | |
| CAGCATGTCTGAAAATACAA+AGG | + | chr5_2:65436028-65436047 | None:intergenic | 35.0% | |
| !! | AAATGAGTTTTCTAGCGGGA+AGG | - | chr5_2:65432578-65432597 | Msa0782450:three_prime_UTR | 40.0% |
| ! | TAACGGCTTGTTTGGATTCT+TGG | + | chr5_2:65432633-65432652 | None:intergenic | 40.0% |
| TCGTCTCTGAATAGTTTGGA+AGG | + | chr5_2:65432772-65432791 | None:intergenic | 40.0% | |
| CGTTTCGTCTCTGAATAGTT+TGG | + | chr5_2:65432776-65432795 | None:intergenic | 40.0% | |
| CATCATTCTCTGCATCGAAA+TGG | - | chr5_2:65432806-65432825 | Msa0782450:CDS | 40.0% | |
| TCTCTTCCACAAGTTACCTT+TGG | - | chr5_2:65432901-65432920 | Msa0782450:intron | 40.0% | |
| GAATTGCCTGAAGCAAAACA+TGG | - | chr5_2:65433268-65433287 | Msa0782450:CDS | 40.0% | |
| ATTGCCTGAAGCAAAACATG+GGG | - | chr5_2:65433270-65433289 | Msa0782450:CDS | 40.0% | |
| ACGCAATTCATTAGCTGTAG+AGG | + | chr5_2:65433302-65433321 | None:intergenic | 40.0% | |
| TACAGCTAATGAATTGCGTC+AGG | - | chr5_2:65433303-65433322 | Msa0782450:CDS | 40.0% | |
| GGTTAACATAGACGTCATAC+CGG | + | chr5_2:65433330-65433349 | None:intergenic | 40.0% | |
| GTATGACGTCTATGTTAACC+CGG | - | chr5_2:65433330-65433349 | Msa0782450:CDS | 40.0% | |
| AAGTTGAAAGCAGCATCTGA+AGG | - | chr5_2:65433355-65433374 | Msa0782450:intron | 40.0% | |
| AGTTGAAAGCAGCATCTGAA+GGG | - | chr5_2:65433356-65433375 | Msa0782450:intron | 40.0% | |
| CGACGATTGAATAGGGAATA+AGG | - | chr5_2:65433578-65433597 | Msa0782450:intron | 40.0% | |
| CGATTGAATAGGGAATAAGG+AGG | - | chr5_2:65433581-65433600 | Msa0782450:intron | 40.0% | |
| AATTGGATGCTTCCGTAGTA+TGG | - | chr5_2:65433755-65433774 | Msa0782450:intron | 40.0% | |
| CAGAGGTAACATCCATACTA+CGG | + | chr5_2:65433770-65433789 | None:intergenic | 40.0% | |
| CTGTACCAGCTAAAAGTTGA+TGG | - | chr5_2:65433873-65433892 | Msa0782450:intron | 40.0% | |
| GTTTCAACTAACCAACTTGG+CGG | - | chr5_2:65434027-65434046 | Msa0782450:intron | 40.0% | |
| AGCTAAAGTTAAACCCTTGC+AGG | - | chr5_2:65434180-65434199 | Msa0782450:intron | 40.0% | |
| ACAAGTTTCTCTCCTGTTAC+CGG | + | chr5_2:65434209-65434228 | None:intergenic | 40.0% | |
| CCCTAACTGTAACATTGACA+AGG | + | chr5_2:65434311-65434330 | None:intergenic | 40.0% | |
| TAAACAGGGGAAATTGCAGT+TGG | - | chr5_2:65434471-65434490 | Msa0782450:intron | 40.0% | |
| AAACAGGGGAAATTGCAGTT+GGG | - | chr5_2:65434472-65434491 | Msa0782450:intron | 40.0% | |
| ! | GTTATAAGTCAGGTTGTGTG+TGG | - | chr5_2:65434522-65434541 | Msa0782450:intron | 40.0% |
| ! | GGCACATATGCTTTTCATTC+GGG | - | chr5_2:65434567-65434586 | Msa0782450:intron | 40.0% |
| !!! | CGTCAAGCTTTTAGAACTCA+TGG | - | chr5_2:65434630-65434649 | Msa0782450:intron | 40.0% |
| GTTCTTATATACGAGACCGA+AGG | - | chr5_2:65434889-65434908 | Msa0782450:intron | 40.0% | |
| !! | TGAGTGATGTTCTGCCATTT+TGG | - | chr5_2:65435042-65435061 | Msa0782450:intron | 40.0% |
| !!! | GAGTGATGTTCTGCCATTTT+GGG | - | chr5_2:65435043-65435062 | Msa0782450:intron | 40.0% |
| TAAGGATCCAGCAAATGCTT+TGG | - | chr5_2:65435191-65435210 | Msa0782450:intron | 40.0% | |
| AAGGATCCAGCAAATGCTTT+GGG | - | chr5_2:65435192-65435211 | Msa0782450:intron | 40.0% | |
| ATTGCCACTGCAGTTGTATT+CGG | - | chr5_2:65435279-65435298 | Msa0782450:CDS | 40.0% | |
| TGCTGCAATGGTAATTGGTA+TGG | - | chr5_2:65435305-65435324 | Msa0782450:CDS | 40.0% | |
| TGCAATGGTAATTGGTATGG+TGG | - | chr5_2:65435308-65435327 | Msa0782450:CDS | 40.0% | |
| ! | ATTATGCAGCTCTAACTTGG+AGG | + | chr5_2:65435334-65435353 | None:intergenic | 40.0% |
| CAAGAAAGTGGCATTTGGAA+AGG | - | chr5_2:65435732-65435751 | Msa0782450:CDS | 40.0% | |
| ATATGAATGTAGTGTGCCTC+TGG | - | chr5_2:65435894-65435913 | Msa0782450:CDS | 40.0% | |
| ! | GTGTCGTTCATCAACAACGT+TGG | + | chr5_2:65432698-65432717 | None:intergenic | 45.0% |
| ! | TAGAACTTCTGGAAGCACGT+CGG | + | chr5_2:65432737-65432756 | None:intergenic | 45.0% |
| !! | AGAGAGTGTCGTAGAACTTC+TGG | + | chr5_2:65432748-65432767 | None:intergenic | 45.0% |
| ! | CGAAGAGGATTGATAGCATC+AGG | + | chr5_2:65432871-65432890 | None:intergenic | 45.0% |
| AAGTTACCTTTGGCGCTAGA+AGG | - | chr5_2:65432911-65432930 | Msa0782450:intron | 45.0% | |
| AATGAACCTTCTAGCGCCAA+AGG | + | chr5_2:65432920-65432939 | None:intergenic | 45.0% | |
| ! | GAAACCCCATGTTTTGCTTC+AGG | + | chr5_2:65433277-65433296 | None:intergenic | 45.0% |
| CTAATGAATTGCGTCAGGAC+CGG | - | chr5_2:65433308-65433327 | Msa0782450:CDS | 45.0% | |
| !! | ATGCTGCTTTCAACTTCTCC+GGG | + | chr5_2:65433351-65433370 | None:intergenic | 45.0% |
| !! | GATGCTGCTTTCAACTTCTC+CGG | + | chr5_2:65433352-65433371 | None:intergenic | 45.0% |
| !! | CGGAAACTGAGTTGATGTAG+TGG | - | chr5_2:65434047-65434066 | Msa0782450:intron | 45.0% |
| CAAGTTTCTCTCCTGTTACC+GGG | + | chr5_2:65434208-65434227 | None:intergenic | 45.0% | |
| GGTAACAGGAGAGAAACTTG+TGG | - | chr5_2:65434208-65434227 | Msa0782450:intron | 45.0% | |
| ! | AGTCAGGTTGTGTGTGGTAA+TGG | - | chr5_2:65434528-65434547 | Msa0782450:intron | 45.0% |
| AGGATCCAGCAAATGCTTTG+GGG | - | chr5_2:65435193-65435212 | Msa0782450:intron | 45.0% | |
| ! | ATCATCCCCAAAGCATTTGC+TGG | + | chr5_2:65435201-65435220 | None:intergenic | 45.0% |
| !!! | ATTATATTTAAAATTGATTT+TGG | + | chr5_2:65433138-65433157 | None:intergenic | 5.0% |
| ! | TTTCTAGCGGGAAGGTTAGC+AGG | - | chr5_2:65432586-65432605 | Msa0782450:three_prime_UTR | 50.0% |
| ! | AGAGAAACGAAAGCGCGAAG+AGG | + | chr5_2:65432886-65432905 | None:intergenic | 50.0% |
| CTAGCGCCAAAGGTAACTTG+TGG | + | chr5_2:65432910-65432929 | None:intergenic | 50.0% | |
| CAACTCAGTTTCCGCCAAGT+TGG | + | chr5_2:65434041-65434060 | None:intergenic | 50.0% | |
| GTTAAACCCTTGCAGGTTCC+CGG | - | chr5_2:65434187-65434206 | Msa0782450:intron | 50.0% | |
| CTGTGGCTATAGGCTGTCAA+AGG | - | chr5_2:65434271-65434290 | Msa0782450:intron | 50.0% | |
| ACCACCGAATACAACTGCAG+TGG | + | chr5_2:65435286-65435305 | None:intergenic | 50.0% | |
| !! | TGTATTCGGTGGTGCTGCAA+TGG | - | chr5_2:65435293-65435312 | Msa0782450:CDS | 50.0% |
| !! | GGTGGTGCTGCAATGGTAAT+TGG | - | chr5_2:65435300-65435319 | Msa0782450:CDS | 50.0% |
| ! | GCCTCTGGCTTATGTTGTTG+TGG | - | chr5_2:65435909-65435928 | Msa0782450:CDS | 50.0% |
| GCCACAACAACATAAGCCAG+AGG | + | chr5_2:65435913-65435932 | None:intergenic | 50.0% | |
| CTGTTACCGGGAACCTGCAA+GGG | + | chr5_2:65434196-65434215 | None:intergenic | 55.0% | |
| TCGGGCATGCTGCATGAAAC+TGG | - | chr5_2:65434585-65434604 | Msa0782450:intron | 55.0% | |
| AGCTTGACGCACTCTTCCCA+TGG | + | chr5_2:65434619-65434638 | None:intergenic | 55.0% | |
| GCCACTGCAGTTGTATTCGG+TGG | - | chr5_2:65435282-65435301 | Msa0782450:CDS | 55.0% | |
| CCTGTTACCGGGAACCTGCA+AGG | + | chr5_2:65434197-65434216 | None:intergenic | 60.0% | |
| CCTTGCAGGTTCCCGGTAAC+AGG | - | chr5_2:65434194-65434213 | Msa0782450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 65432536 | 65436083 | 65432536 | ID=Msa0782450;Name=Msa0782450 |
| chr5_2 | mRNA | 65432536 | 65436083 | 65432536 | ID=Msa0782450-mRNA-1;Parent=Msa0782450;Name=Msa0782450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=44|1|1|1|0.8|0.66|6|244|250 |
| chr5_2 | exon | 65432536 | 65432636 | 65432536 | ID=Msa0782450-mRNA-1:exon:19642;Parent=Msa0782450-mRNA-1 |
| chr5_2 | exon | 65432662 | 65432900 | 65432662 | ID=Msa0782450-mRNA-1:exon:19641;Parent=Msa0782450-mRNA-1 |
| chr5_2 | exon | 65432985 | 65433071 | 65432985 | ID=Msa0782450-mRNA-1:exon:19640;Parent=Msa0782450-mRNA-1 |
| chr5_2 | exon | 65433266 | 65433357 | 65433266 | ID=Msa0782450-mRNA-1:exon:19639;Parent=Msa0782450-mRNA-1 |
| chr5_2 | exon | 65435231 | 65435355 | 65435231 | ID=Msa0782450-mRNA-1:exon:19638;Parent=Msa0782450-mRNA-1 |
| chr5_2 | exon | 65435687 | 65436083 | 65435687 | ID=Msa0782450-mRNA-1:exon:19637;Parent=Msa0782450-mRNA-1 |
| chr5_2 | five_prime_UTR | 65436040 | 65436083 | 65436040 | ID=Msa0782450-mRNA-1:five_prime_utr;Parent=Msa0782450-mRNA-1 |
| chr5_2 | CDS | 65435687 | 65436039 | 65435687 | ID=Msa0782450-mRNA-1:cds;Parent=Msa0782450-mRNA-1 |
| chr5_2 | CDS | 65435231 | 65435355 | 65435231 | ID=Msa0782450-mRNA-1:cds;Parent=Msa0782450-mRNA-1 |
| chr5_2 | CDS | 65433266 | 65433357 | 65433266 | ID=Msa0782450-mRNA-1:cds;Parent=Msa0782450-mRNA-1 |
| chr5_2 | CDS | 65432985 | 65433071 | 65432985 | ID=Msa0782450-mRNA-1:cds;Parent=Msa0782450-mRNA-1 |
| chr5_2 | CDS | 65432805 | 65432900 | 65432805 | ID=Msa0782450-mRNA-1:cds;Parent=Msa0782450-mRNA-1 |
| chr5_2 | three_prime_UTR | 65432662 | 65432804 | 65432662 | ID=Msa0782450-mRNA-1:three_prime_utr;Parent=Msa0782450-mRNA-1 |
| chr5_2 | three_prime_UTR | 65432536 | 65432636 | 65432536 | ID=Msa0782450-mRNA-1:three_prime_utr;Parent=Msa0782450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
