Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860380 | XP_003616942.1 | 96.400 | 250 | 7 | 1 | 1 | 250 | 1 | 248 | 1.28e-173 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860380 | G7K7L7 | 96.400 | 250 | 7 | 1 | 1 | 250 | 1 | 248 | 6.12e-174 | 488 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0673460 | Msa0860380 | 0.808165 | 3.540926e-50 | -8.615850e-47 |
| Msa0731180 | Msa0860380 | 0.815128 | 1.083567e-51 | -8.615850e-47 |
| Msa0756320 | Msa0860380 | 0.813310 | 2.730366e-51 | -8.615850e-47 |
| Msa0763890 | Msa0860380 | 0.802866 | 4.577357e-49 | -8.615850e-47 |
| Msa0782450 | Msa0860380 | 0.867043 | 1.829875e-65 | -8.615850e-47 |
| Msa0138020 | Msa0860380 | 0.805486 | 1.304335e-49 | -8.615850e-47 |
| Msa0206010 | Msa0860380 | 0.803303 | 3.718423e-49 | -8.615850e-47 |
| Msa0218370 | Msa0860380 | 0.803320 | 3.688397e-49 | -8.615850e-47 |
| Msa0223910 | Msa0860380 | 0.801242 | 9.877652e-49 | -8.615850e-47 |
| Msa0236420 | Msa0860380 | 0.810403 | 1.172959e-50 | -8.615850e-47 |
| Msa0455760 | Msa0860380 | 0.809352 | 1.974443e-50 | -8.615850e-47 |
| Msa0464100 | Msa0860380 | 0.807019 | 6.199868e-50 | -8.615850e-47 |
| Msa0265150 | Msa0860380 | 0.804490 | 2.107199e-49 | -8.615850e-47 |
| Msa0270960 | Msa0860380 | 0.809106 | 2.229590e-50 | -8.615850e-47 |
| Msa0281930 | Msa0860380 | 0.802028 | 6.811652e-49 | -8.615850e-47 |
| Msa0319170 | Msa0860380 | 0.803957 | 2.720735e-49 | -8.615850e-47 |
| Msa0321080 | Msa0860380 | 0.812490 | 4.130467e-51 | -8.615850e-47 |
| Msa0326110 | Msa0860380 | 0.807868 | 4.096881e-50 | -8.615850e-47 |
| Msa0363790 | Msa0860380 | 0.811923 | 5.491095e-51 | -8.615850e-47 |
| Msa0486690 | Msa0860380 | 0.808168 | 3.536078e-50 | -8.615850e-47 |
| Msa0860380 | Msa0861130 | 0.803746 | 3.008701e-49 | -8.615850e-47 |
| Msa0860380 | Msa0876360 | 0.800266 | 1.562602e-48 | -8.615850e-47 |
| Msa0860380 | Msa0958920 | 0.852336 | 4.934060e-61 | -8.615850e-47 |
| Msa0860380 | Msa0982270 | 0.800878 | 1.172255e-48 | -8.615850e-47 |
| Msa0860380 | Msa1039710 | -0.808829 | 2.555014e-50 | -8.615850e-47 |
| Msa0860380 | Msa1107260 | 0.817273 | 3.591140e-52 | -8.615850e-47 |
| Msa0860380 | Msa1335230 | 0.801136 | 1.037912e-48 | -8.615850e-47 |
| Msa0860380 | Msa1423820 | 0.812134 | 4.938473e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860380 | MtrunA17_Chr5g0439521 | 96.400 | 250 | 7 | 1 | 1 | 250 | 1 | 248 | 1.18e-177 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860380 | AT1G05060.1 | 58.268 | 254 | 100 | 3 | 1 | 250 | 1 | 252 | 5.25e-100 | 292 |
Find 54 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCTATCTAAAATTT+TGG | 0.076463 | 5_4:-59044484 | Msa0860380:CDS |
| TAACGGCTTGTTTGGATTCT+TGG | 0.230694 | 5_4:+59047512 | None:intergenic |
| AGAGAGTGTCGTAGAACTTC+TGG | 0.321176 | 5_4:+59047397 | None:intergenic |
| GGTGGTGCTGCAATGGTAAT+TGG | 0.357696 | 5_4:-59044965 | Msa0860380:CDS |
| AGATACAGAAGATCGAAGTT+TGG | 0.358477 | 5_4:+59047297 | None:intergenic |
| GATGCTGCTTTCAACTTCTC+CGG | 0.362635 | 5_4:+59046916 | None:intergenic |
| CATCATTCTCTACATCGAAA+TGG | 0.367106 | 5_4:-59047336 | Msa0860380:CDS |
| TCAATTTGCATTGAAAATAG+TGG | 0.369899 | 5_4:-59044413 | Msa0860380:three_prime_UTR |
| ATTGCCACTGCAGTTGTATT+CGG | 0.384023 | 5_4:-59044986 | Msa0860380:CDS |
| TCTCTTCCACAAGTCACCTT+TGG | 0.390614 | 5_4:-59047241 | Msa0860380:CDS |
| AAGTCACCTTTGGCGCTAGA+AGG | 0.396847 | 5_4:-59047231 | Msa0860380:intron |
| CACAATTTGTTGCAATAAGA+TGG | 0.407176 | 5_4:-59044202 | None:intergenic |
| TACATTATGCAGCTCTAACT+TGG | 0.413171 | 5_4:+59044931 | None:intergenic |
| TATGTCAAGAAAGTGGCATT+TGG | 0.416481 | 5_4:-59044538 | Msa0860380:CDS |
| CAAAACAAACAATAATAATC+TGG | 0.416877 | 5_4:-59047589 | Msa0860380:five_prime_UTR |
| GATACAGAAGATCGAAGTTT+GGG | 0.419495 | 5_4:+59047298 | None:intergenic |
| CGTTTCGTCTCTGAATAGTT+TGG | 0.431600 | 5_4:+59047369 | None:intergenic |
| TTTCTAGCGGGAAGGTTAGC+AGG | 0.436098 | 5_4:-59047556 | Msa0860380:CDS |
| CGAAGAGGATTGATAGCATC+AGG | 0.449172 | 5_4:+59047274 | None:intergenic |
| ATCATTCTCTACATCGAAAT+GGG | 0.461493 | 5_4:-59047335 | Msa0860380:CDS |
| TACTGCTAATGAATTGCGTC+AGG | 0.462273 | 5_4:-59046962 | Msa0860380:CDS |
| CATCTTATTGCAACAAATTG+TGG | 0.468940 | 5_4:+59044203 | None:intergenic |
| GCCTCTGGCTTATGTTGTTG+TGG | 0.484597 | 5_4:-59044356 | Msa0860380:three_prime_UTR |
| ATATGAATGTAGTGTGCCTC+TGG | 0.489771 | 5_4:-59044371 | Msa0860380:three_prime_UTR |
| ATGCTGCTTTCAACTTCTCC+GGG | 0.519765 | 5_4:+59046917 | None:intergenic |
| TGCTGCAATGGTAATTGGTA+TGG | 0.525519 | 5_4:-59044960 | Msa0860380:CDS |
| CAAGAAAGTGGCATTTGGAA+AGG | 0.526917 | 5_4:-59044533 | Msa0860380:CDS |
| ATGGTATATGTAGTAAATAA+CGG | 0.531661 | 5_4:-59044291 | Msa0860380:intron |
| ATGGATGACCTCAAAACTAA+AGG | 0.534397 | 5_4:-59044717 | Msa0860380:CDS |
| ATTATGCAGCTCTAACTTGG+AGG | 0.547168 | 5_4:+59044934 | None:intergenic |
| AAGAAAGTGGCATTTGGAAA+GGG | 0.553714 | 5_4:-59044532 | Msa0860380:CDS |
| CTGAGAATATGTCAAGAAAG+TGG | 0.564264 | 5_4:-59044545 | Msa0860380:CDS |
| AATGAACCTTCTAGCGCCAA+AGG | 0.569048 | 5_4:+59047225 | None:intergenic |
| AAGTTGAAAGCAGCATCTGA+AGG | 0.570779 | 5_4:-59046910 | Msa0860380:CDS |
| GAATTGCCTGAAGCAAAACA+TGG | 0.573837 | 5_4:-59046997 | Msa0860380:CDS |
| CAAACTATTCAGAGACGAAA+CGG | 0.576652 | 5_4:-59047368 | Msa0860380:CDS |
| TGCAATGGTAATTGGTATGG+TGG | 0.580334 | 5_4:-59044957 | Msa0860380:CDS |
| CTAATGAATTGCGTCAGGAT+CGG | 0.590890 | 5_4:-59046957 | Msa0860380:CDS |
| TCGTCTCTGAATAGTTTGGA+AGG | 0.591010 | 5_4:+59047373 | None:intergenic |
| ACGCAATTCATTAGCAGTAG+AGG | 0.591383 | 5_4:+59046966 | None:intergenic |
| TGTATTCGGTGGTGCTGCAA+TGG | 0.600855 | 5_4:-59044972 | Msa0860380:CDS |
| TGACCTCAAAACTAAAGGAA+AGG | 0.603490 | 5_4:-59044712 | Msa0860380:CDS |
| GCCACTGCAGTTGTATTCGG+TGG | 0.617882 | 5_4:-59044983 | Msa0860380:CDS |
| AGAGAAACGAAAGCGCGAAG+AGG | 0.618299 | 5_4:+59047259 | None:intergenic |
| AATTGCCTGAAGCAAAACAT+GGG | 0.623883 | 5_4:-59046996 | Msa0860380:CDS |
| CAGCATGTCTGAAAATACAA+AGG | 0.628369 | 5_4:+59044240 | None:intergenic |
| AGTTGAAAGCAGCATCTGAA+GGG | 0.631833 | 5_4:-59046909 | Msa0860380:CDS |
| CTAGCGCCAAAGGTGACTTG+TGG | 0.643943 | 5_4:+59047235 | None:intergenic |
| GTGTCGTTCATCAACAACGT+TGG | 0.664896 | 5_4:+59047447 | None:intergenic |
| GTATGACGTCTATGTTAACC+CGG | 0.669969 | 5_4:-59046935 | Msa0860380:CDS |
| ATTGCCTGAAGCAAAACATG+GGG | 0.672964 | 5_4:-59046995 | Msa0860380:CDS |
| ACCACCGAATACAACTGCAG+TGG | 0.702322 | 5_4:+59044982 | None:intergenic |
| GCCACAACAACATAAGCCAG+AGG | 0.704988 | 5_4:+59044355 | None:intergenic |
| TAGAACTTCTGGAAGCACGT+CGG | 0.734680 | 5_4:+59047408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTAAAATTAATTT+TGG | + | chr5_4:59044682-59044701 | None:intergenic | 0.0% |
| !!! | AAATTAATTTTGGTATTTTT+TGG | + | chr5_4:59044672-59044691 | None:intergenic | 10.0% |
| !!! | TTTTTCTTCTTTTTATATAT+AGG | + | chr5_4:59046239-59046258 | None:intergenic | 10.0% |
| !! | TATAAAATTGAAAACAAAAT+AGG | + | chr5_4:59046786-59046805 | None:intergenic | 10.0% |
| !!! | TTTTTTTCAATTCAATTTCT+AGG | - | chr5_4:59044615-59044634 | Msa0860380:intron | 15.0% |
| !!! | TTTTTGTTTTTATGTGTTTT+AGG | - | chr5_4:59044787-59044806 | Msa0860380:intron | 15.0% |
| !! | CAACTAATCTTATTATATAA+TGG | + | chr5_4:59045267-59045286 | None:intergenic | 15.0% |
| !!! | ATATAATGTTTTAACAAAAC+AGG | - | chr5_4:59045915-59045934 | Msa0860380:intron | 15.0% |
| !!! | TATAATGTTTTAACAAAACA+GGG | - | chr5_4:59045916-59045935 | Msa0860380:intron | 15.0% |
| !! | TTAGTCTACTTATATAATTA+AGG | + | chr5_4:59046692-59046711 | None:intergenic | 15.0% |
| !! | AAATAGGAATTAGAAAATAT+GGG | + | chr5_4:59046770-59046789 | None:intergenic | 15.0% |
| !! | AAAATAGGAATTAGAAAATA+TGG | + | chr5_4:59046771-59046790 | None:intergenic | 15.0% |
| !!! | TTTGTTTTCAATTTTATAGT+TGG | - | chr5_4:59046788-59046807 | Msa0860380:intron | 15.0% |
| !!! | TATTCAAAAGTATAAAGAAA+TGG | + | chr5_4:59047197-59047216 | None:intergenic | 15.0% |
| !!! | AAAAGATCTATCTAAAATTT+TGG | - | chr5_4:59047326-59047345 | Msa0860380:CDS | 15.0% |
| !!! | AAAGATCTATCTAAAATTTT+GGG | - | chr5_4:59047327-59047346 | Msa0860380:CDS | 15.0% |
| !! | CAAAACAAACAATAATAATC+TGG | - | chr5_4:59044221-59044240 | Msa0860380:three_prime_UTR | 20.0% |
| !! | TGAATAAGTGTTTAACTAAA+CGG | + | chr5_4:59045057-59045076 | None:intergenic | 20.0% |
| !!! | ATAAATGTTGAGATTTTATG+AGG | - | chr5_4:59045616-59045635 | Msa0860380:intron | 20.0% |
| !!! | TAAATGTTGAGATTTTATGA+GGG | - | chr5_4:59045617-59045636 | Msa0860380:intron | 20.0% |
| !!! | TTTTAAATTTATGCTTACTG+TGG | - | chr5_4:59045799-59045818 | Msa0860380:intron | 20.0% |
| !!! | TTTTTATATATAGGACAAGA+GGG | + | chr5_4:59046230-59046249 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTATAGTTGGAA+AGG | - | chr5_4:59046793-59046812 | Msa0860380:intron | 20.0% |
| !!! | TTTTCAATGCAAATTGAAAA+AGG | + | chr5_4:59047394-59047413 | None:intergenic | 20.0% |
| !! | ATGGTATATGTAGTAAATAA+CGG | - | chr5_4:59047519-59047538 | Msa0860380:CDS | 20.0% |
| !! | CTTTTGAGCTAATTTTGTAA+CGG | + | chr5_4:59044318-59044337 | None:intergenic | 25.0% |
| !!! | TTGTTTTTATGTGTTTTAGG+TGG | - | chr5_4:59044790-59044809 | Msa0860380:intron | 25.0% |
| !!! | TGTTTTTATGTGTTTTAGGT+GGG | - | chr5_4:59044791-59044810 | Msa0860380:intron | 25.0% |
| ! | AGCAAATTAATATGAGAAGA+AGG | + | chr5_4:59044945-59044964 | None:intergenic | 25.0% |
| ! | GCAATTCTCAATAAAAAACA+AGG | - | chr5_4:59045009-59045028 | Msa0860380:intron | 25.0% |
| ! | TCAATAAAAAACAAGGTGTA+AGG | - | chr5_4:59045016-59045035 | Msa0860380:intron | 25.0% |
| ! | CAATAAAAAACAAGGTGTAA+GGG | - | chr5_4:59045017-59045036 | Msa0860380:intron | 25.0% |
| ! | AATAAAAAACAAGGTGTAAG+GGG | - | chr5_4:59045018-59045037 | Msa0860380:intron | 25.0% |
| ! | GTTAAACACTTATTCAATAC+TGG | - | chr5_4:59045061-59045080 | Msa0860380:intron | 25.0% |
| ! | TATAAGCTGAAAATAGCTTA+TGG | - | chr5_4:59045198-59045217 | Msa0860380:intron | 25.0% |
| ! | TAAGTACTTGTGTAAGTATT+TGG | + | chr5_4:59045244-59045263 | None:intergenic | 25.0% |
| ! | AAACTTACGTATATTAGCTA+TGG | - | chr5_4:59045354-59045373 | Msa0860380:intron | 25.0% |
| ! | AGGATTATCATAGTTTATAG+TGG | + | chr5_4:59045466-59045485 | None:intergenic | 25.0% |
| !! | AAATGTTGAGATTTTATGAG+GGG | - | chr5_4:59045618-59045637 | Msa0860380:intron | 25.0% |
| !! | TGTTCCATTAATTTGAATGA+GGG | - | chr5_4:59045666-59045685 | Msa0860380:intron | 25.0% |
| !! | CTAGTTTGAAATTATTGCTA+AGG | - | chr5_4:59045883-59045902 | Msa0860380:intron | 25.0% |
| ! | ATAAATGTGAGGTTTAAACA+GGG | - | chr5_4:59046002-59046021 | Msa0860380:intron | 25.0% |
| ! | AATGGTCATCATTATAATCA+TGG | - | chr5_4:59046091-59046110 | Msa0860380:intron | 25.0% |
| !! | CTTTTTATATATAGGACAAG+AGG | + | chr5_4:59046231-59046250 | None:intergenic | 25.0% |
| ! | AAATAAAATAATCAAGTCCG+AGG | - | chr5_4:59046261-59046280 | Msa0860380:intron | 25.0% |
| ! | GAAATGCAATTATTTCACAT+AGG | + | chr5_4:59046356-59046375 | None:intergenic | 25.0% |
| ! | GTGAAATAATTGCATTTCTA+AGG | - | chr5_4:59046358-59046377 | Msa0860380:intron | 25.0% |
| !! | TCTCGTATATAAGAACATTT+TGG | + | chr5_4:59046430-59046449 | None:intergenic | 25.0% |
| ! | ATGTACTAAATATCCCAAAA+TGG | + | chr5_4:59046604-59046623 | None:intergenic | 25.0% |
| !!! | ATTTTGGGATATTTAGTACA+TGG | - | chr5_4:59046603-59046622 | Msa0860380:intron | 25.0% |
| !! | ACTGGATTTTGCAATTTATA+TGG | + | chr5_4:59047032-59047051 | None:intergenic | 25.0% |
| ! | AATTGCAAAATCCAGTTTAT+TGG | - | chr5_4:59047036-59047055 | Msa0860380:intron | 25.0% |
| !!! | TTTTTGATATTCTCAAGTTG+TGG | + | chr5_4:59047135-59047154 | None:intergenic | 25.0% |
| !! | ATTTTGTTCCCATGAAAATA+TGG | - | chr5_4:59047157-59047176 | Msa0860380:intron | 25.0% |
| !! | TTTTGTTCCCATGAAAATAT+GGG | - | chr5_4:59047158-59047177 | Msa0860380:intron | 25.0% |
| !! | AAACTTACCCATATTTTCAT+GGG | + | chr5_4:59047168-59047187 | None:intergenic | 25.0% |
| !! | AAAACTTACCCATATTTTCA+TGG | + | chr5_4:59047169-59047188 | None:intergenic | 25.0% |
| !! | ATGCCAAAACTTTGATTTAT+AGG | - | chr5_4:59047242-59047261 | Msa0860380:CDS | 25.0% |
| ! | TCAATTTGCATTGAAAATAG+TGG | - | chr5_4:59047397-59047416 | Msa0860380:CDS | 25.0% |
| ! | TGGAAAAATGAGTTTTCTAG+CGG | - | chr5_4:59044241-59044260 | Msa0860380:three_prime_UTR | 30.0% |
| !! | TAATTTTGTAACGGCTTGTT+TGG | + | chr5_4:59044309-59044328 | None:intergenic | 30.0% |
| ATCATTCTCTACATCGAAAT+GGG | - | chr5_4:59044475-59044494 | Msa0860380:CDS | 30.0% | |
| !!! | TTATTGATTTTGCGTGTGTT+TGG | - | chr5_4:59044638-59044657 | Msa0860380:intron | 30.0% |
| ! | TTGATAAGTTGGGTATTAAG+AGG | - | chr5_4:59044727-59044746 | Msa0860380:intron | 30.0% |
| ! | TGATAAGTTGGGTATTAAGA+GGG | - | chr5_4:59044728-59044747 | Msa0860380:intron | 30.0% |
| ! | CATTTTCTCATTGTAGGTTA+AGG | - | chr5_4:59044980-59044999 | Msa0860380:CDS | 30.0% |
| ATAAAAAACAAGGTGTAAGG+GGG | - | chr5_4:59045019-59045038 | Msa0860380:intron | 30.0% | |
| !! | CTTATTCAATACTGGCTTAA+TGG | - | chr5_4:59045069-59045088 | Msa0860380:intron | 30.0% |
| TCTGTTAAGTGTAAACTGTT+TGG | - | chr5_4:59045103-59045122 | Msa0860380:intron | 30.0% | |
| AGATGTAATGTGAAGTTTGA+TGG | + | chr5_4:59045382-59045401 | None:intergenic | 30.0% | |
| AACTTCACATTACATCTCTA+TGG | - | chr5_4:59045385-59045404 | Msa0860380:intron | 30.0% | |
| ACATTAAAGTGTAACGGTAT+AGG | + | chr5_4:59045486-59045505 | None:intergenic | 30.0% | |
| AGCAACACATTAAAGTGTAA+CGG | + | chr5_4:59045492-59045511 | None:intergenic | 30.0% | |
| ! | AATGTTGAGATTTTATGAGG+GGG | - | chr5_4:59045619-59045638 | Msa0860380:intron | 30.0% |
| ! | CTGTTCCATTAATTTGAATG+AGG | - | chr5_4:59045665-59045684 | Msa0860380:intron | 30.0% |
| ACTTCCCTCATTCAAATTAA+TGG | + | chr5_4:59045673-59045692 | None:intergenic | 30.0% | |
| GATAAATGTGAGGTTTAAAC+AGG | - | chr5_4:59046001-59046020 | Msa0860380:intron | 30.0% | |
| TAAATGTGAGGTTTAAACAG+GGG | - | chr5_4:59046003-59046022 | Msa0860380:intron | 30.0% | |
| TTACTTCTCTGTTATAAGTC+AGG | - | chr5_4:59046057-59046076 | Msa0860380:intron | 30.0% | |
| TTATACACACTATGCTCTTT+AGG | - | chr5_4:59046552-59046571 | Msa0860380:intron | 30.0% | |
| CATTTGAACAGAAATTTGTG+AGG | + | chr5_4:59046634-59046653 | None:intergenic | 30.0% | |
| CTCACAAATTTCTGTTCAAA+TGG | - | chr5_4:59046632-59046651 | Msa0860380:intron | 30.0% | |
| TTATGTTGTGCTTCAAATTC+AGG | - | chr5_4:59046656-59046675 | Msa0860380:intron | 30.0% | |
| ATAGCGTCAAGAAAAGAATA+AGG | - | chr5_4:59046718-59046737 | Msa0860380:intron | 30.0% | |
| AGTAAGAAGAAACAATACTG+TGG | + | chr5_4:59046961-59046980 | None:intergenic | 30.0% | |
| AGATTAAGAAGCCAATAAAC+TGG | + | chr5_4:59047050-59047069 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCCGTTTTAACAGA+TGG | - | chr5_4:59047074-59047093 | Msa0860380:intron | 30.0% |
| ! | CAGCCTATAAATCAAAGTTT+TGG | + | chr5_4:59047248-59047267 | None:intergenic | 30.0% |
| GCTGAAGAATGAAAATAGTA+TGG | - | chr5_4:59047500-59047519 | Msa0860380:CDS | 30.0% | |
| !! | GGAAAAATGAGTTTTCTAGC+GGG | - | chr5_4:59044242-59044261 | Msa0860380:three_prime_UTR | 35.0% |
| !!! | ACAACGTTGGTTTTTGAGAT+TGG | + | chr5_4:59044353-59044372 | None:intergenic | 35.0% |
| CAAACTATTCAGAGACGAAA+CGG | - | chr5_4:59044442-59044461 | Msa0860380:three_prime_UTR | 35.0% | |
| CATCATTCTCTACATCGAAA+TGG | - | chr5_4:59044474-59044493 | Msa0860380:CDS | 35.0% | |
| GATACAGAAGATCGAAGTTT+GGG | + | chr5_4:59044515-59044534 | None:intergenic | 35.0% | |
| AGATACAGAAGATCGAAGTT+TGG | + | chr5_4:59044516-59044535 | None:intergenic | 35.0% | |
| ! | AGCTGCAATTGTTGATAAGT+TGG | - | chr5_4:59044716-59044735 | Msa0860380:CDS | 35.0% |
| ! | GCTGCAATTGTTGATAAGTT+GGG | - | chr5_4:59044717-59044736 | Msa0860380:CDS | 35.0% |
| TGTTTGTAGTTTCTGAACTG+TGG | - | chr5_4:59044760-59044779 | Msa0860380:intron | 35.0% | |
| AATTGCCTGAAGCAAAACAT+GGG | - | chr5_4:59044814-59044833 | Msa0860380:intron | 35.0% | |
| ! | TGCTCTCATTTTCTCATTGT+AGG | - | chr5_4:59044974-59044993 | Msa0860380:CDS | 35.0% |
| AACTGTTTGGACGATTGAAT+AGG | - | chr5_4:59045116-59045135 | Msa0860380:intron | 35.0% | |
| ACTGTTTGGACGATTGAATA+GGG | - | chr5_4:59045117-59045136 | Msa0860380:intron | 35.0% | |
| GATTGAATAGGGAATAAGGA+TGG | - | chr5_4:59045128-59045147 | Msa0860380:intron | 35.0% | |
| GCTGAAAATAGCTTATGGTA+TGG | - | chr5_4:59045203-59045222 | Msa0860380:intron | 35.0% | |
| TAAGTATTTGGAAGAGCCTA+TGG | + | chr5_4:59045232-59045251 | None:intergenic | 35.0% | |
| GTCAAGTAAATACTTTGTCG+AGG | + | chr5_4:59045333-59045352 | None:intergenic | 35.0% | |
| ! | GTTTTCCATCAACTTTTAGC+TGG | + | chr5_4:59045426-59045445 | None:intergenic | 35.0% |
| GGAAAACTAATTGTGTAGAC+AGG | - | chr5_4:59045439-59045458 | Msa0860380:intron | 35.0% | |
| TGTGTTTCAACTAACCAACT+TGG | - | chr5_4:59045569-59045588 | Msa0860380:intron | 35.0% | |
| TTATGAGGGGGATAACTTAT+TGG | - | chr5_4:59045631-59045650 | Msa0860380:intron | 35.0% | |
| TATGAGGGGGATAACTTATT+GGG | - | chr5_4:59045632-59045651 | Msa0860380:intron | 35.0% | |
| TTTATGCTTACTGTGGCTAT+AGG | - | chr5_4:59045806-59045825 | Msa0860380:intron | 35.0% | |
| TCCTTGTCAATGTTACAGTT+AGG | - | chr5_4:59045852-59045871 | Msa0860380:intron | 35.0% | |
| CCTTGTCAATGTTACAGTTA+GGG | - | chr5_4:59045853-59045872 | Msa0860380:intron | 35.0% | |
| CTTGTCAATGTTACAGTTAG+GGG | - | chr5_4:59045854-59045873 | Msa0860380:intron | 35.0% | |
| CCATTATTCGAAAGTTGTCT+TGG | + | chr5_4:59045964-59045983 | None:intergenic | 35.0% | |
| CCAAGACAACTTTCGAATAA+TGG | - | chr5_4:59045961-59045980 | Msa0860380:intron | 35.0% | |
| ! | ACAACTTTCGAATAATGGAG+AGG | - | chr5_4:59045966-59045985 | Msa0860380:intron | 35.0% |
| ! | TTTCGAATAATGGAGAGGAA+AGG | - | chr5_4:59045971-59045990 | Msa0860380:intron | 35.0% |
| ! | TTCGAATAATGGAGAGGAAA+GGG | - | chr5_4:59045972-59045991 | Msa0860380:intron | 35.0% |
| AGGGAACTAAGATAAATGTG+AGG | - | chr5_4:59045991-59046010 | Msa0860380:intron | 35.0% | |
| !! | AATTGCAGTTGGGTGTTATT+TGG | - | chr5_4:59046027-59046046 | Msa0860380:intron | 35.0% |
| !! | ATTGCAGTTGGGTGTTATTT+GGG | - | chr5_4:59046028-59046047 | Msa0860380:intron | 35.0% |
| ! | TGGCACATATGCTTTTCATT+CGG | - | chr5_4:59046111-59046130 | Msa0860380:intron | 35.0% |
| TGAAACTGGTTAAAACACCA+TGG | - | chr5_4:59046144-59046163 | Msa0860380:intron | 35.0% | |
| GAAACTGGTTAAAACACCAT+GGG | - | chr5_4:59046145-59046164 | Msa0860380:intron | 35.0% | |
| TAAAATAATCAAGTCCGAGG+AGG | - | chr5_4:59046264-59046283 | Msa0860380:intron | 35.0% | |
| TAAGACTTAATGAACCTCCT+CGG | + | chr5_4:59046281-59046300 | None:intergenic | 35.0% | |
| TTGCATGCTATTACTACCTT+CGG | + | chr5_4:59046453-59046472 | None:intergenic | 35.0% | |
| ATGAATAGTGCAACTTCATC+TGG | + | chr5_4:59046505-59046524 | None:intergenic | 35.0% | |
| ACTATGCTCTTTAGGTATCA+AGG | - | chr5_4:59046560-59046579 | Msa0860380:intron | 35.0% | |
| ! | TACATTATGCAGCTCTAACT+TGG | + | chr5_4:59046882-59046901 | None:intergenic | 35.0% |
| AGGTCATCCATCTGTTAAAA+CGG | + | chr5_4:59047084-59047103 | None:intergenic | 35.0% | |
| ATGGATGACCTCAAAACTAA+AGG | - | chr5_4:59047093-59047112 | Msa0860380:intron | 35.0% | |
| TGACCTCAAAACTAAAGGAA+AGG | - | chr5_4:59047098-59047117 | Msa0860380:intron | 35.0% | |
| !!! | CATCCTTTCCTTTAGTTTTG+AGG | + | chr5_4:59047104-59047123 | None:intergenic | 35.0% |
| CTGAGAATATGTCAAGAAAG+TGG | - | chr5_4:59047265-59047284 | Msa0860380:CDS | 35.0% | |
| TATGTCAAGAAAGTGGCATT+TGG | - | chr5_4:59047272-59047291 | Msa0860380:CDS | 35.0% | |
| AAGAAAGTGGCATTTGGAAA+GGG | - | chr5_4:59047278-59047297 | Msa0860380:CDS | 35.0% | |
| CAGCATGTCTGAAAATACAA+AGG | + | chr5_4:59047573-59047592 | None:intergenic | 35.0% | |
| !! | AAATGAGTTTTCTAGCGGGA+AGG | - | chr5_4:59044246-59044265 | Msa0860380:three_prime_UTR | 40.0% |
| ! | TAACGGCTTGTTTGGATTCT+TGG | + | chr5_4:59044301-59044320 | None:intergenic | 40.0% |
| TCGTCTCTGAATAGTTTGGA+AGG | + | chr5_4:59044440-59044459 | None:intergenic | 40.0% | |
| CGTTTCGTCTCTGAATAGTT+TGG | + | chr5_4:59044444-59044463 | None:intergenic | 40.0% | |
| GAATTGCCTGAAGCAAAACA+TGG | - | chr5_4:59044813-59044832 | Msa0860380:intron | 40.0% | |
| ATTGCCTGAAGCAAAACATG+GGG | - | chr5_4:59044815-59044834 | Msa0860380:intron | 40.0% | |
| ACGCAATTCATTAGCAGTAG+AGG | + | chr5_4:59044847-59044866 | None:intergenic | 40.0% | |
| TACTGCTAATGAATTGCGTC+AGG | - | chr5_4:59044848-59044867 | Msa0860380:intron | 40.0% | |
| CTAATGAATTGCGTCAGGAT+CGG | - | chr5_4:59044853-59044872 | Msa0860380:intron | 40.0% | |
| GTATGACGTCTATGTTAACC+CGG | - | chr5_4:59044875-59044894 | Msa0860380:intron | 40.0% | |
| AAGTTGAAAGCAGCATCTGA+AGG | - | chr5_4:59044900-59044919 | Msa0860380:intron | 40.0% | |
| AGTTGAAAGCAGCATCTGAA+GGG | - | chr5_4:59044901-59044920 | Msa0860380:intron | 40.0% | |
| !! | ATACTGGCTTAATGGACATG+TGG | - | chr5_4:59045077-59045096 | Msa0860380:intron | 40.0% |
| GGACGATTGAATAGGGAATA+AGG | - | chr5_4:59045124-59045143 | Msa0860380:intron | 40.0% | |
| GCTTATGGTATGGTATCCAT+AGG | - | chr5_4:59045213-59045232 | Msa0860380:intron | 40.0% | |
| !! | TACTATGGGAGCATCTGATT+AGG | + | chr5_4:59045301-59045320 | None:intergenic | 40.0% |
| AATCAGATGCTCCCATAGTA+TGG | - | chr5_4:59045301-59045320 | Msa0860380:intron | 40.0% | |
| CGAGGTAACATCCATACTAT+GGG | + | chr5_4:59045315-59045334 | None:intergenic | 40.0% | |
| TCGAGGTAACATCCATACTA+TGG | + | chr5_4:59045316-59045335 | None:intergenic | 40.0% | |
| CTGTACCAGCTAAAAGTTGA+TGG | - | chr5_4:59045418-59045437 | Msa0860380:intron | 40.0% | |
| GTTTCAACTAACCAACTTGG+CGG | - | chr5_4:59045572-59045591 | Msa0860380:intron | 40.0% | |
| AGCTAAAGTTAAACCCTTGC+AGG | - | chr5_4:59045725-59045744 | Msa0860380:intron | 40.0% | |
| ACAAGTTTCTCTCCTGTTAC+CGG | + | chr5_4:59045754-59045773 | None:intergenic | 40.0% | |
| CCCTAACTGTAACATTGACA+AGG | + | chr5_4:59045856-59045875 | None:intergenic | 40.0% | |
| TAAACAGGGGAAATTGCAGT+TGG | - | chr5_4:59046016-59046035 | Msa0860380:intron | 40.0% | |
| AAACAGGGGAAATTGCAGTT+GGG | - | chr5_4:59046017-59046036 | Msa0860380:intron | 40.0% | |
| ! | GTTATAAGTCAGGTTGTGTG+TGG | - | chr5_4:59046067-59046086 | Msa0860380:intron | 40.0% |
| ! | GGCACATATGCTTTTCATTC+GGG | - | chr5_4:59046112-59046131 | Msa0860380:intron | 40.0% |
| !!! | CGTCAAGCTTTTAGAACTCA+TGG | - | chr5_4:59046175-59046194 | Msa0860380:intron | 40.0% |
| GTTCTTATATACGAGACCGA+AGG | - | chr5_4:59046434-59046453 | Msa0860380:intron | 40.0% | |
| !! | TGAGTGATGTTCTGCCATTT+TGG | - | chr5_4:59046587-59046606 | Msa0860380:intron | 40.0% |
| !!! | GAGTGATGTTCTGCCATTTT+GGG | - | chr5_4:59046588-59046607 | Msa0860380:intron | 40.0% |
| TAAGGATCCAGCAAATGCTT+TGG | - | chr5_4:59046736-59046755 | Msa0860380:intron | 40.0% | |
| AAGGATCCAGCAAATGCTTT+GGG | - | chr5_4:59046737-59046756 | Msa0860380:intron | 40.0% | |
| ATTGCCACTGCAGTTGTATT+CGG | - | chr5_4:59046824-59046843 | Msa0860380:intron | 40.0% | |
| TGCTGCAATGGTAATTGGTA+TGG | - | chr5_4:59046850-59046869 | Msa0860380:intron | 40.0% | |
| TGCAATGGTAATTGGTATGG+TGG | - | chr5_4:59046853-59046872 | Msa0860380:intron | 40.0% | |
| ! | ATTATGCAGCTCTAACTTGG+AGG | + | chr5_4:59046879-59046898 | None:intergenic | 40.0% |
| CAAGAAAGTGGCATTTGGAA+AGG | - | chr5_4:59047277-59047296 | Msa0860380:CDS | 40.0% | |
| ATATGAATGTAGTGTGCCTC+TGG | - | chr5_4:59047439-59047458 | Msa0860380:CDS | 40.0% | |
| ! | GTGTCGTTCATCAACAACGT+TGG | + | chr5_4:59044366-59044385 | None:intergenic | 45.0% |
| ! | TAGAACTTCTGGAAGCACGT+CGG | + | chr5_4:59044405-59044424 | None:intergenic | 45.0% |
| !! | AGAGAGTGTCGTAGAACTTC+TGG | + | chr5_4:59044416-59044435 | None:intergenic | 45.0% |
| ! | CGAAGAGGATTGATAGCATC+AGG | + | chr5_4:59044539-59044558 | None:intergenic | 45.0% |
| TCTCTTCCACAAGTCACCTT+TGG | - | chr5_4:59044569-59044588 | Msa0860380:intron | 45.0% | |
| AATGAACCTTCTAGCGCCAA+AGG | + | chr5_4:59044588-59044607 | None:intergenic | 45.0% | |
| ! | GAAACCCCATGTTTTGCTTC+AGG | + | chr5_4:59044822-59044841 | None:intergenic | 45.0% |
| !! | ATGCTGCTTTCAACTTCTCC+GGG | + | chr5_4:59044896-59044915 | None:intergenic | 45.0% |
| !! | GATGCTGCTTTCAACTTCTC+CGG | + | chr5_4:59044897-59044916 | None:intergenic | 45.0% |
| !! | CGGAAACTGAGTTGATGTAG+TGG | - | chr5_4:59045592-59045611 | Msa0860380:intron | 45.0% |
| CAAGTTTCTCTCCTGTTACC+GGG | + | chr5_4:59045753-59045772 | None:intergenic | 45.0% | |
| GGTAACAGGAGAGAAACTTG+TGG | - | chr5_4:59045753-59045772 | Msa0860380:intron | 45.0% | |
| ! | AGTCAGGTTGTGTGTGGTAA+TGG | - | chr5_4:59046073-59046092 | Msa0860380:intron | 45.0% |
| AGGATCCAGCAAATGCTTTG+GGG | - | chr5_4:59046738-59046757 | Msa0860380:intron | 45.0% | |
| ! | ATCATCCCCAAAGCATTTGC+TGG | + | chr5_4:59046746-59046765 | None:intergenic | 45.0% |
| ! | TTTCTAGCGGGAAGGTTAGC+AGG | - | chr5_4:59044254-59044273 | Msa0860380:three_prime_UTR | 50.0% |
| ! | AGAGAAACGAAAGCGCGAAG+AGG | + | chr5_4:59044554-59044573 | None:intergenic | 50.0% |
| AAGTCACCTTTGGCGCTAGA+AGG | - | chr5_4:59044579-59044598 | Msa0860380:intron | 50.0% | |
| CAACTCAGTTTCCGCCAAGT+TGG | + | chr5_4:59045586-59045605 | None:intergenic | 50.0% | |
| GTTAAACCCTTGCAGGTTCC+CGG | - | chr5_4:59045732-59045751 | Msa0860380:intron | 50.0% | |
| CTGTGGCTATAGGCTGTCAA+AGG | - | chr5_4:59045816-59045835 | Msa0860380:intron | 50.0% | |
| ACCACCGAATACAACTGCAG+TGG | + | chr5_4:59046831-59046850 | None:intergenic | 50.0% | |
| !! | TGTATTCGGTGGTGCTGCAA+TGG | - | chr5_4:59046838-59046857 | Msa0860380:intron | 50.0% |
| !! | GGTGGTGCTGCAATGGTAAT+TGG | - | chr5_4:59046845-59046864 | Msa0860380:intron | 50.0% |
| ! | GCCTCTGGCTTATGTTGTTG+TGG | - | chr5_4:59047454-59047473 | Msa0860380:CDS | 50.0% |
| GCCACAACAACATAAGCCAG+AGG | + | chr5_4:59047458-59047477 | None:intergenic | 50.0% | |
| CTAGCGCCAAAGGTGACTTG+TGG | + | chr5_4:59044578-59044597 | None:intergenic | 55.0% | |
| CTGTTACCGGGAACCTGCAA+GGG | + | chr5_4:59045741-59045760 | None:intergenic | 55.0% | |
| TCGGGCATGCTGCATGAAAC+TGG | - | chr5_4:59046130-59046149 | Msa0860380:intron | 55.0% | |
| AGCTTGACGCACTCTTCCCA+TGG | + | chr5_4:59046164-59046183 | None:intergenic | 55.0% | |
| GCCACTGCAGTTGTATTCGG+TGG | - | chr5_4:59046827-59046846 | Msa0860380:intron | 55.0% | |
| CCTGTTACCGGGAACCTGCA+AGG | + | chr5_4:59045742-59045761 | None:intergenic | 60.0% | |
| CCTTGCAGGTTCCCGGTAAC+AGG | - | chr5_4:59045739-59045758 | Msa0860380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 59044204 | 59047628 | 59044204 | ID=Msa0860380;Name=Msa0860380 |
| chr5_4 | mRNA | 59044204 | 59047628 | 59044204 | ID=Msa0860380-mRNA-1;Parent=Msa0860380;Name=Msa0860380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=44|1|1|1|0.8|0.66|6|244|250 |
| chr5_4 | exon | 59044204 | 59044304 | 59044204 | ID=Msa0860380-mRNA-1:exon:18063;Parent=Msa0860380-mRNA-1 |
| chr5_4 | exon | 59044330 | 59044568 | 59044330 | ID=Msa0860380-mRNA-1:exon:18062;Parent=Msa0860380-mRNA-1 |
| chr5_4 | exon | 59044653 | 59044739 | 59044653 | ID=Msa0860380-mRNA-1:exon:18061;Parent=Msa0860380-mRNA-1 |
| chr5_4 | exon | 59044934 | 59045025 | 59044934 | ID=Msa0860380-mRNA-1:exon:18060;Parent=Msa0860380-mRNA-1 |
| chr5_4 | exon | 59046899 | 59047023 | 59046899 | ID=Msa0860380-mRNA-1:exon:18059;Parent=Msa0860380-mRNA-1 |
| chr5_4 | exon | 59047232 | 59047628 | 59047232 | ID=Msa0860380-mRNA-1:exon:18058;Parent=Msa0860380-mRNA-1 |
| chr5_4 | five_prime_UTR | 59047585 | 59047628 | 59047585 | ID=Msa0860380-mRNA-1:five_prime_utr;Parent=Msa0860380-mRNA-1 |
| chr5_4 | CDS | 59047232 | 59047584 | 59047232 | ID=Msa0860380-mRNA-1:cds;Parent=Msa0860380-mRNA-1 |
| chr5_4 | CDS | 59046899 | 59047023 | 59046899 | ID=Msa0860380-mRNA-1:cds;Parent=Msa0860380-mRNA-1 |
| chr5_4 | CDS | 59044934 | 59045025 | 59044934 | ID=Msa0860380-mRNA-1:cds;Parent=Msa0860380-mRNA-1 |
| chr5_4 | CDS | 59044653 | 59044739 | 59044653 | ID=Msa0860380-mRNA-1:cds;Parent=Msa0860380-mRNA-1 |
| chr5_4 | CDS | 59044473 | 59044568 | 59044473 | ID=Msa0860380-mRNA-1:cds;Parent=Msa0860380-mRNA-1 |
| chr5_4 | three_prime_UTR | 59044330 | 59044472 | 59044330 | ID=Msa0860380-mRNA-1:three_prime_utr;Parent=Msa0860380-mRNA-1 |
| chr5_4 | three_prime_UTR | 59044204 | 59044304 | 59044204 | ID=Msa0860380-mRNA-1:three_prime_utr;Parent=Msa0860380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
