Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785170 | XP_003616546.2 | 95.039 | 383 | 6 | 2 | 1 | 370 | 1 | 383 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785170 | sp|P92961|PROT1_ARATH | 74.413 | 383 | 85 | 2 | 1 | 370 | 60 | 442 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785170 | G7KBU8 | 95.039 | 383 | 6 | 2 | 1 | 370 | 1 | 383 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0785170 | Msa0817500 | 0.868154 | 8.059885e-66 | -8.615850e-47 |
| Msa0233610 | Msa0785170 | 0.800464 | 1.423577e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785170 | MtrunA17_Chr5g0436281 | 95.039 | 383 | 6 | 2 | 1 | 370 | 1 | 383 | 0.0 | 723 |
| Msa0785170 | MtrunA17_Chr3g0112971 | 73.425 | 365 | 84 | 2 | 19 | 370 | 72 | 436 | 0.0 | 550 |
| Msa0785170 | MtrunA17_Chr4g0058161 | 41.146 | 384 | 211 | 4 | 1 | 370 | 68 | 450 | 1.61e-95 | 292 |
| Msa0785170 | MtrunA17_Chr1g0184721 | 32.824 | 393 | 238 | 9 | 1 | 370 | 51 | 440 | 2.34e-53 | 182 |
| Msa0785170 | MtrunA17_Chr1g0198081 | 31.899 | 395 | 236 | 10 | 4 | 369 | 90 | 480 | 3.10e-46 | 164 |
| Msa0785170 | MtrunA17_Chr4g0027241 | 29.723 | 397 | 244 | 11 | 4 | 370 | 71 | 462 | 1.63e-40 | 148 |
| Msa0785170 | MtrunA17_Chr8g0387941 | 28.173 | 394 | 249 | 10 | 4 | 367 | 58 | 447 | 1.33e-37 | 140 |
| Msa0785170 | MtrunA17_Chr5g0430221 | 55.652 | 115 | 13 | 1 | 256 | 370 | 63 | 139 | 5.26e-30 | 112 |
| Msa0785170 | MtrunA17_Chr5g0430221 | 85.106 | 47 | 7 | 0 | 85 | 131 | 1 | 47 | 1.60e-19 | 84.3 |
| Msa0785170 | MtrunA17_Chr2g0331721 | 29.563 | 389 | 243 | 14 | 1 | 364 | 75 | 457 | 1.09e-28 | 116 |
| Msa0785170 | MtrunA17_Chr4g0057851 | 25.964 | 389 | 256 | 10 | 1 | 364 | 38 | 419 | 2.04e-23 | 100 |
| Msa0785170 | MtrunA17_Chr5g0422741 | 27.249 | 389 | 257 | 13 | 1 | 367 | 54 | 438 | 8.43e-23 | 99.0 |
| Msa0785170 | MtrunA17_Chr8g0384661 | 26.492 | 419 | 244 | 16 | 4 | 367 | 81 | 490 | 3.18e-22 | 97.8 |
| Msa0785170 | MtrunA17_Chr6g0459021 | 27.041 | 392 | 256 | 14 | 1 | 368 | 62 | 447 | 7.68e-22 | 96.3 |
| Msa0785170 | MtrunA17_Chr3g0125091 | 26.190 | 420 | 252 | 14 | 4 | 370 | 65 | 479 | 1.11e-21 | 96.3 |
| Msa0785170 | MtrunA17_Chr6g0459011 | 26.221 | 389 | 253 | 10 | 1 | 363 | 13 | 393 | 6.05e-21 | 93.2 |
| Msa0785170 | MtrunA17_Chr8g0376991 | 26.196 | 397 | 253 | 15 | 1 | 368 | 51 | 436 | 2.15e-20 | 92.0 |
| Msa0785170 | MtrunA17_Chr6g0458931 | 24.747 | 396 | 260 | 11 | 1 | 368 | 70 | 455 | 2.85e-20 | 92.0 |
| Msa0785170 | MtrunA17_Chr3g0140761 | 25.532 | 423 | 248 | 17 | 4 | 367 | 64 | 478 | 3.81e-20 | 91.7 |
| Msa0785170 | MtrunA17_Chr1g0159761 | 25.876 | 371 | 225 | 10 | 4 | 324 | 58 | 428 | 6.49e-20 | 90.9 |
| Msa0785170 | MtrunA17_Chr3g0125081 | 25.714 | 420 | 253 | 14 | 4 | 370 | 65 | 478 | 8.72e-20 | 90.5 |
| Msa0785170 | MtrunA17_Chr1g0198531 | 25.897 | 390 | 261 | 13 | 1 | 367 | 52 | 436 | 1.04e-19 | 90.1 |
| Msa0785170 | MtrunA17_Chr3g0125101 | 25.598 | 418 | 251 | 14 | 4 | 367 | 65 | 476 | 1.21e-19 | 90.1 |
| Msa0785170 | MtrunA17_Chr1g0198541 | 26.786 | 392 | 255 | 16 | 1 | 367 | 52 | 436 | 4.45e-19 | 88.2 |
| Msa0785170 | MtrunA17_Chr3g0122921 | 27.456 | 397 | 230 | 17 | 1 | 368 | 61 | 428 | 8.64e-19 | 87.4 |
| Msa0785170 | MtrunA17_Chr2g0328081 | 27.329 | 322 | 217 | 8 | 60 | 368 | 111 | 428 | 2.00e-18 | 86.3 |
| Msa0785170 | MtrunA17_Chr3g0130641 | 25.721 | 416 | 255 | 16 | 4 | 369 | 64 | 475 | 2.31e-18 | 86.3 |
| Msa0785170 | MtrunA17_Chr6g0458921 | 26.343 | 391 | 261 | 10 | 1 | 368 | 42 | 428 | 5.14e-18 | 85.1 |
| Msa0785170 | MtrunA17_Chr1g0146491 | 24.703 | 421 | 254 | 17 | 4 | 367 | 54 | 468 | 5.84e-18 | 85.1 |
| Msa0785170 | MtrunA17_Chr4g0037201 | 25.175 | 429 | 246 | 16 | 4 | 367 | 90 | 508 | 1.70e-17 | 84.0 |
| Msa0785170 | MtrunA17_Chr7g0230011 | 26.786 | 392 | 257 | 14 | 1 | 368 | 58 | 443 | 1.84e-17 | 83.6 |
| Msa0785170 | MtrunA17_Chr3g0130651 | 25.337 | 371 | 221 | 14 | 4 | 324 | 57 | 421 | 5.78e-17 | 82.0 |
| Msa0785170 | MtrunA17_Chr4g0027261 | 32.632 | 190 | 117 | 5 | 189 | 370 | 1 | 187 | 5.97e-17 | 78.2 |
| Msa0785170 | MtrunA17_Chr3g0077651 | 24.814 | 403 | 249 | 14 | 4 | 368 | 83 | 469 | 1.18e-16 | 81.3 |
| Msa0785170 | MtrunA17_Chr6g0459031 | 25.831 | 391 | 263 | 10 | 1 | 368 | 42 | 428 | 1.31e-16 | 80.9 |
| Msa0785170 | MtrunA17_Chr1g0146391 | 22.381 | 420 | 269 | 14 | 1 | 368 | 40 | 454 | 3.67e-15 | 76.6 |
| Msa0785170 | MtrunA17_Chr1g0206871 | 24.419 | 430 | 255 | 18 | 4 | 369 | 46 | 469 | 6.80e-15 | 75.9 |
| Msa0785170 | MtrunA17_Chr6g0459001 | 26.218 | 431 | 251 | 12 | 1 | 368 | 50 | 476 | 3.67e-14 | 73.6 |
| Msa0785170 | MtrunA17_Chr5g0447221 | 23.632 | 402 | 248 | 12 | 4 | 354 | 60 | 453 | 1.37e-13 | 71.6 |
| Msa0785170 | MtrunA17_Chr2g0293331 | 21.718 | 419 | 267 | 15 | 4 | 368 | 43 | 454 | 4.71e-12 | 67.0 |
| Msa0785170 | MtrunA17_Chr3g0143701 | 25.201 | 373 | 229 | 13 | 4 | 336 | 115 | 477 | 7.10e-12 | 66.6 |
| Msa0785170 | MtrunA17_Chr1g0206851 | 24.346 | 382 | 217 | 17 | 36 | 367 | 18 | 377 | 2.01e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0785170 | AT2G39890.2 | 74.413 | 383 | 85 | 2 | 1 | 370 | 60 | 442 | 0.0 | 589 |
| Msa0785170 | AT2G39890.3 | 74.413 | 383 | 85 | 2 | 1 | 370 | 1 | 383 | 0.0 | 589 |
| Msa0785170 | AT2G39890.1 | 74.413 | 383 | 85 | 2 | 1 | 370 | 60 | 442 | 0.0 | 589 |
| Msa0785170 | AT3G55740.1 | 73.368 | 383 | 89 | 2 | 1 | 370 | 57 | 439 | 0.0 | 582 |
| Msa0785170 | AT3G55740.2 | 73.368 | 383 | 89 | 2 | 1 | 370 | 1 | 383 | 0.0 | 580 |
| Msa0785170 | AT3G55740.3 | 73.368 | 383 | 89 | 2 | 1 | 370 | 1 | 383 | 0.0 | 580 |
| Msa0785170 | AT2G36590.1 | 74.674 | 383 | 84 | 2 | 1 | 370 | 54 | 436 | 0.0 | 565 |
| Msa0785170 | AT2G36590.2 | 75.781 | 256 | 54 | 1 | 1 | 248 | 54 | 309 | 1.76e-141 | 405 |
| Msa0785170 | AT1G08230.2 | 27.561 | 410 | 238 | 10 | 4 | 370 | 58 | 451 | 2.56e-39 | 145 |
| Msa0785170 | AT5G41800.1 | 28.283 | 396 | 250 | 11 | 4 | 369 | 57 | 448 | 6.80e-36 | 136 |
| Msa0785170 | AT1G08230.4 | 30.887 | 327 | 197 | 8 | 66 | 370 | 13 | 332 | 1.37e-33 | 127 |
| Msa0785170 | AT1G08230.6 | 30.887 | 327 | 197 | 8 | 66 | 370 | 13 | 332 | 1.37e-33 | 127 |
| Msa0785170 | AT1G08230.5 | 30.887 | 327 | 197 | 8 | 66 | 370 | 13 | 332 | 1.37e-33 | 127 |
| Msa0785170 | AT1G08230.3 | 28.274 | 336 | 194 | 7 | 66 | 370 | 32 | 351 | 2.07e-33 | 127 |
| Msa0785170 | AT5G40780.3 | 26.768 | 396 | 252 | 13 | 1 | 368 | 13 | 398 | 6.21e-25 | 105 |
| Msa0785170 | AT5G40780.2 | 26.768 | 396 | 252 | 13 | 1 | 368 | 13 | 398 | 6.21e-25 | 105 |
| Msa0785170 | AT5G40780.1 | 26.768 | 396 | 252 | 13 | 1 | 368 | 61 | 446 | 8.92e-25 | 105 |
| Msa0785170 | AT1G24400.1 | 27.226 | 393 | 254 | 13 | 1 | 368 | 56 | 441 | 2.16e-22 | 98.2 |
| Msa0785170 | AT1G48640.1 | 25.320 | 391 | 264 | 10 | 1 | 368 | 68 | 453 | 3.23e-22 | 97.8 |
| Msa0785170 | AT1G67640.1 | 26.410 | 390 | 261 | 11 | 1 | 368 | 56 | 441 | 9.18e-22 | 96.7 |
| Msa0785170 | AT1G44100.1 | 26.464 | 427 | 243 | 17 | 4 | 367 | 58 | 476 | 9.98e-22 | 96.7 |
| Msa0785170 | AT5G09220.1 | 26.316 | 418 | 250 | 16 | 4 | 367 | 76 | 489 | 7.17e-21 | 94.4 |
| Msa0785170 | AT5G63850.1 | 23.810 | 420 | 258 | 14 | 4 | 367 | 49 | 462 | 2.09e-19 | 89.7 |
| Msa0785170 | AT1G77380.1 | 26.014 | 419 | 249 | 16 | 4 | 367 | 60 | 472 | 5.68e-19 | 88.6 |
| Msa0785170 | AT1G61270.1 | 25.464 | 377 | 255 | 8 | 1 | 354 | 61 | 434 | 1.70e-18 | 87.0 |
| Msa0785170 | AT3G01760.1 | 24.802 | 379 | 256 | 10 | 1 | 354 | 59 | 433 | 1.45e-17 | 84.3 |
| Msa0785170 | AT1G71680.1 | 25.064 | 391 | 266 | 10 | 1 | 368 | 62 | 448 | 3.18e-17 | 83.2 |
| Msa0785170 | AT1G25530.1 | 26.835 | 395 | 253 | 14 | 1 | 368 | 55 | 440 | 2.18e-16 | 80.5 |
| Msa0785170 | AT1G10010.1 | 24.286 | 420 | 262 | 13 | 4 | 370 | 58 | 474 | 5.74e-14 | 73.6 |
| Msa0785170 | AT1G10010.2 | 24.286 | 420 | 262 | 13 | 4 | 370 | 59 | 475 | 6.18e-14 | 73.2 |
| Msa0785170 | AT1G71680.2 | 26.136 | 264 | 175 | 8 | 1 | 246 | 62 | 323 | 8.99e-12 | 66.2 |
Find 99 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGAAAATTTAGTTTA+TGG | 0.064357 | 5_2:+69942428 | None:intergenic |
| ATCTTTCAGCTCTTGGAATT+TGG | 0.137122 | 5_2:-69939997 | Msa0785170:CDS |
| ATTGCTATGCTTCATGAATT+TGG | 0.182375 | 5_2:-69941970 | Msa0785170:CDS |
| AAATATTGGTTACATCATTT+TGG | 0.183698 | 5_2:-69940920 | Msa0785170:CDS |
| GCTTATGTTCTTGGATATTC+AGG | 0.210818 | 5_2:-69942078 | Msa0785170:five_prime_UTR |
| ATTAATAGTGCTTATGTTCT+TGG | 0.219245 | 5_2:-69942087 | Msa0785170:five_prime_UTR |
| ACTATGTAGTTGTTTGTTAT+TGG | 0.229756 | 5_2:+69942528 | None:intergenic |
| GATACCAAACATGGGATTAA+AGG | 0.240091 | 5_2:-69937727 | Msa0785170:CDS |
| CTCCAATTGTTGAAAGAATA+TGG | 0.242226 | 5_2:+69937369 | Msa0785160:intron |
| AGTAAAATATTTACGACAAT+TGG | 0.244065 | 5_2:-69938641 | Msa0785170:CDS |
| TTATATCTGGTTACCTTTGC+AGG | 0.244416 | 5_2:-69938384 | Msa0785170:CDS |
| AAGTCCGATGTACGAGTATT+TGG | 0.263204 | 5_2:-69937749 | Msa0785170:CDS |
| TGGTTACCTTTGCAGGGTAC+TGG | 0.266071 | 5_2:-69938377 | Msa0785170:CDS |
| GAACTTATCATTTAGAATCT+TGG | 0.267192 | 5_2:-69937686 | Msa0785170:CDS |
| TGCGAAAACATGATAAGTTT+TGG | 0.273586 | 5_2:+69937411 | Msa0785160:intron |
| TTCCATATTCTTTCAACAAT+TGG | 0.287057 | 5_2:-69937371 | Msa0785170:three_prime_UTR |
| AGGGACCATTATGGTTCCTT+TGG | 0.291528 | 5_2:-69942058 | Msa0785170:exon |
| ATTCCTCATCTTTCAGCTCT+TGG | 0.291738 | 5_2:-69940004 | Msa0785170:CDS |
| TGTTTGTTATTGGGTTATCA+TGG | 0.310826 | 5_2:+69942538 | None:intergenic |
| TCAACTACTTATAAAAGATT+TGG | 0.311028 | 5_2:-69942475 | Msa0785170:five_prime_UTR |
| TGGAGTTCTGCCATTATATC+TGG | 0.316550 | 5_2:-69938397 | Msa0785170:CDS |
| TGGATATTCAGGGACCATTA+TGG | 0.319732 | 5_2:-69942067 | Msa0785170:exon |
| CTATGTAGTTGTTTGTTATT+GGG | 0.336689 | 5_2:+69942529 | None:intergenic |
| TTCATCATGTTCTTTACAAC+TGG | 0.341148 | 5_2:+69938444 | None:intergenic |
| GTAAAATATTTACGACAATT+GGG | 0.357812 | 5_2:-69938640 | Msa0785170:CDS |
| GGGACCATTATGGTTCCTTT+GGG | 0.360448 | 5_2:-69942057 | Msa0785170:exon |
| GGTTGGATAGGTGGTGTTGT+TGG | 0.363628 | 5_2:-69942036 | Msa0785170:CDS |
| CCATTATGGTTCCTTTGGGT+TGG | 0.367229 | 5_2:-69942053 | Msa0785170:exon |
| GCGCGAGATTATAGTGTTCC+TGG | 0.367524 | 5_2:-69938674 | Msa0785170:CDS |
| TAACATCCATTCAAAAGCTT+TGG | 0.380271 | 5_2:-69937513 | Msa0785170:CDS |
| ACTCCCTTTAATCCCATGTT+TGG | 0.383334 | 5_2:+69937723 | None:intergenic |
| GCCACAACTTTCACCCAGAT+TGG | 0.385424 | 5_2:+69938306 | None:intergenic |
| TTTGGCATTGGATCAACATT+TGG | 0.387263 | 5_2:-69937495 | Msa0785170:CDS |
| GCAAAGGTAACCAGATATAA+TGG | 0.392872 | 5_2:+69938387 | None:intergenic |
| TTTGGCTGGTTCAGCTTTGA+AGG | 0.399376 | 5_2:-69940902 | Msa0785170:intron |
| TTTGCAGGGTACTGGGCATA+TGG | 0.417869 | 5_2:-69938369 | Msa0785170:CDS |
| GTGGGGTTTGTGTTGACAAC+AGG | 0.421500 | 5_2:-69942111 | Msa0785170:five_prime_UTR |
| ATGGTTCCTTTGGGTTGGAT+AGG | 0.421589 | 5_2:-69942048 | Msa0785170:CDS |
| CTGATTTGATGTGCAGTGTC+TGG | 0.427222 | 5_2:+69942254 | None:intergenic |
| CCATTCAAAAGCTTTGGCAT+TGG | 0.427620 | 5_2:-69937507 | Msa0785170:CDS |
| TTGAATCATACCTGTATCTC+AGG | 0.442836 | 5_2:+69938575 | None:intergenic |
| ATAATGTCAAGGGTCCAATC+TGG | 0.445142 | 5_2:-69938320 | Msa0785170:CDS |
| AGGAATGCTTCCTGAGATAC+AGG | 0.446567 | 5_2:-69938585 | Msa0785170:intron |
| GTTTGTTATTGGGTTATCAT+GGG | 0.451135 | 5_2:+69942539 | None:intergenic |
| GGTTACCTTTGCAGGGTACT+GGG | 0.454663 | 5_2:-69938376 | Msa0785170:CDS |
| TCATTTAGAATCTTGGTAAG+AGG | 0.460627 | 5_2:-69937679 | Msa0785170:CDS |
| ATACCAAACATGGGATTAAA+GGG | 0.462442 | 5_2:-69937726 | Msa0785170:CDS |
| GATTTGCAAGGATAAATGTA+AGG | 0.470613 | 5_2:+69937566 | Msa0785160:CDS |
| CTTATGTTCTTGGATATTCA+GGG | 0.476371 | 5_2:-69942077 | Msa0785170:five_prime_UTR |
| GTTCCTTTGGGTTGGATAGG+TGG | 0.476872 | 5_2:-69942045 | Msa0785170:CDS |
| ACATCGTTGTTATCAACATC+AGG | 0.480642 | 5_2:+69942284 | None:intergenic |
| GTTTGTTCTTATTTGTCACT+AGG | 0.484789 | 5_2:+69937536 | Msa0785160:intron |
| CTCGTGTTCGCATATAATAC+AGG | 0.485270 | 5_2:-69938605 | Msa0785170:CDS |
| TCAGCTCTACTGCCATTCCT+TGG | 0.498923 | 5_2:-69937628 | Msa0785170:CDS |
| TCAGCTCTTGGAATTTGGCT+CGG | 0.504062 | 5_2:-69939992 | Msa0785170:CDS |
| TAGATTCATGGTTTCAAGTG+GGG | 0.513864 | 5_2:-69942128 | Msa0785170:five_prime_UTR |
| GAACGTTTCTGTTGATGAAG+AGG | 0.516016 | 5_2:-69942324 | Msa0785170:five_prime_UTR |
| GGAGATTTCATGAGCCTCAC+GGG | 0.518640 | 5_2:-69937607 | Msa0785170:CDS |
| CGCGAGATTATAGTGTTCCT+GGG | 0.519600 | 5_2:-69938673 | Msa0785170:CDS |
| TGAAAGATGAGGAATACAAA+TGG | 0.520939 | 5_2:+69940012 | None:intergenic |
| CCAACCCAAAGGAACCATAA+TGG | 0.524633 | 5_2:+69942053 | None:intergenic |
| TATATCTGGTTACCTTTGCA+GGG | 0.525745 | 5_2:-69938383 | Msa0785170:CDS |
| TGGAGATTTCATGAGCCTCA+CGG | 0.525781 | 5_2:-69937608 | Msa0785170:CDS |
| ATTTGCAAGGATAAATGTAA+GGG | 0.535895 | 5_2:+69937567 | Msa0785160:CDS |
| ATATGCGAACACGAGATTAG+CGG | 0.554545 | 5_2:+69938613 | None:intergenic |
| TAAAATATTTACGACAATTG+GGG | 0.554830 | 5_2:-69938639 | Msa0785170:CDS |
| TAATGTCAAGGGTCCAATCT+GGG | 0.555099 | 5_2:-69938319 | Msa0785170:CDS |
| TGTAGATTCATGGTTTCAAG+TGG | 0.557082 | 5_2:-69942130 | Msa0785170:intron |
| CTTGTACTATCACTAAAAGA+TGG | 0.558343 | 5_2:-69939929 | Msa0785170:intron |
| GTAGATTCATGGTTTCAAGT+GGG | 0.559483 | 5_2:-69942129 | Msa0785170:intron |
| CCCGCTATGGCGATAAAATG+TGG | 0.561659 | 5_2:+69940055 | None:intergenic |
| CTATGCTTCATGAATTTGGT+GGG | 0.571541 | 5_2:-69941966 | Msa0785170:CDS |
| CCGCAGCGCTGCAATAGTTG+CGG | 0.572180 | 5_2:+69937450 | Msa0785160:intron |
| TGCACACACAAGTCCCGCTA+TGG | 0.573760 | 5_2:+69940042 | None:intergenic |
| AGTTGCGGCAACAGACATGA+TGG | 0.574833 | 5_2:+69937465 | Msa0785160:intron |
| TCCAATCTGGGTGAAAGTTG+TGG | 0.575627 | 5_2:-69938307 | Msa0785170:CDS |
| TGCAATGACTGATTGAAGAA+AGG | 0.580697 | 5_2:+69938272 | None:intergenic |
| CTCATGAAATCTCCAAGGAA+TGG | 0.583815 | 5_2:+69937616 | Msa0785160:CDS |
| GTATCCAAATACTCGTACAT+CGG | 0.587381 | 5_2:+69937745 | None:intergenic |
| GAGTATTTGGATACCAAACA+TGG | 0.591198 | 5_2:-69937736 | Msa0785170:CDS |
| GCTATGCTTCATGAATTTGG+TGG | 0.593644 | 5_2:-69941967 | Msa0785170:CDS |
| TTTAGAATCTTGGTAAGAGG+TGG | 0.593972 | 5_2:-69937676 | Msa0785170:CDS |
| GAAAAGCATATTGCCTCACA+TGG | 0.595626 | 5_2:-69940972 | Msa0785170:CDS |
| ATTCCAAGAGCTGAAAGATG+AGG | 0.614707 | 5_2:+69940001 | None:intergenic |
| ACTGCACATCAAATCAGCAC+TGG | 0.622058 | 5_2:-69942248 | Msa0785170:intron |
| CTAGGTACATATGATTTGCA+AGG | 0.626482 | 5_2:+69937554 | Msa0785160:intron |
| GGAACACTATAATCTCGCGC+TGG | 0.631796 | 5_2:+69938677 | None:intergenic |
| ATATAATGGCAGAACTCCAA+CGG | 0.633354 | 5_2:+69938401 | None:intergenic |
| ATATGCCCAGTACCCTGCAA+AGG | 0.654594 | 5_2:+69938371 | None:intergenic |
| CCGCAACTATTGCAGCGCTG+CGG | 0.655381 | 5_2:-69937450 | Msa0785170:CDS |
| TTTGCAAGGATAAATGTAAG+GGG | 0.658355 | 5_2:+69937568 | Msa0785160:CDS |
| TGAGGCTCATGAAATCTCCA+AGG | 0.658818 | 5_2:+69937611 | Msa0785160:CDS |
| ACACCACCTATCCAACCCAA+AGG | 0.675537 | 5_2:+69942042 | None:intergenic |
| TGTAGCAAAATTCACGCTGG+CGG | 0.681047 | 5_2:-69942351 | Msa0785170:five_prime_UTR |
| GTGCTATGACAATATATGCG+AGG | 0.685612 | 5_2:+69939951 | None:intergenic |
| AGTATTTGGATACCAAACAT+GGG | 0.691576 | 5_2:-69937735 | Msa0785170:CDS |
| GGTTGTAGCAAAATTCACGC+TGG | 0.691636 | 5_2:-69942354 | Msa0785170:five_prime_UTR |
| CATACTGCAGAGTCCATGTG+AGG | 0.716059 | 5_2:+69940959 | None:intergenic |
| ATGTGCTTATAGCTCCCGTG+AGG | 0.755171 | 5_2:+69937593 | Msa0785160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAAACTAACAATA+CGG | + | chr5_2:69940767-69940786 | None:intergenic | 10.0% |
| !!! | ATTCAAGTTATAAAATATTT+AGG | + | chr5_2:69942079-69942098 | None:intergenic | 10.0% |
| !! | AATAAAAAATCTTGATATCA+TGG | + | chr5_2:69938369-69938388 | None:intergenic | 15.0% |
| !!! | TATTTAATAAATCAGCTTTT+TGG | - | chr5_2:69938385-69938404 | Msa0785170:CDS | 15.0% |
| !!! | AATCTTTTCATGATAAATAT+TGG | - | chr5_2:69938962-69938981 | Msa0785170:intron | 15.0% |
| !! | AATGAAATAATAAATGAGTA+AGG | - | chr5_2:69940268-69940287 | Msa0785170:intron | 15.0% |
| !! | ATGAAATAATAAATGAGTAA+GGG | - | chr5_2:69940269-69940288 | Msa0785170:intron | 15.0% |
| !!! | TATGTGTAATTTCTTTAAAA+TGG | - | chr5_2:69940350-69940369 | Msa0785170:intron | 15.0% |
| !! | TAAATATAAACTAACAATAC+GGG | + | chr5_2:69940766-69940785 | None:intergenic | 15.0% |
| !! | AGTAAAACTTACTTAAAAAA+TGG | + | chr5_2:69941395-69941414 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTAGTTTAGATG+TGG | - | chr5_2:69941684-69941703 | Msa0785170:intron | 15.0% |
| !! | TCAACTACTTATAAAAGATT+TGG | - | chr5_2:69937421-69937440 | Msa0785170:CDS | 20.0% |
| !!! | GAAGATGAAAATTTAGTTTA+TGG | + | chr5_2:69937471-69937490 | Msa0785160:intron | 20.0% |
| !!! | TTTTGGTCATTGAAATTATA+AGG | - | chr5_2:69938402-69938421 | Msa0785170:CDS | 20.0% |
| !! | TTTGGTCATTGAAATTATAA+GGG | - | chr5_2:69938403-69938422 | Msa0785170:CDS | 20.0% |
| !! | AATTTGCAAAATGACAATTT+AGG | - | chr5_2:69938446-69938465 | Msa0785170:CDS | 20.0% |
| !!! | CAAAATTATGGTGTTAAATT+TGG | + | chr5_2:69938512-69938531 | None:intergenic | 20.0% |
| !! | ACATAGAATCTTCAAAATTA+TGG | + | chr5_2:69938524-69938543 | None:intergenic | 20.0% |
| !!! | AATTGCTATTTCAAAAATTG+AGG | - | chr5_2:69938662-69938681 | Msa0785170:CDS | 20.0% |
| !!! | ATTGCTATTTCAAAAATTGA+GGG | - | chr5_2:69938663-69938682 | Msa0785170:CDS | 20.0% |
| !!! | ATTTGTTCCATTTTTATTGT+AGG | - | chr5_2:69938899-69938918 | Msa0785170:intron | 20.0% |
| !!! | TTTTCTACCTACAATAAAAA+TGG | + | chr5_2:69938909-69938928 | None:intergenic | 20.0% |
| !!! | AAATATTGGTTACATCATTT+TGG | - | chr5_2:69938976-69938995 | Msa0785170:intron | 20.0% |
| !! | CATAATTACATTATTCTCTT+CGG | - | chr5_2:69939043-69939062 | Msa0785170:intron | 20.0% |
| !! | TCATGTTAATTATGAATTAG+CGG | - | chr5_2:69939295-69939314 | Msa0785170:intron | 20.0% |
| !!! | TTTTACATTTTTTGTGTATG+TGG | - | chr5_2:69939368-69939387 | Msa0785170:intron | 20.0% |
| !! | TCCAATAAATCAATAATTAG+AGG | - | chr5_2:69939454-69939473 | Msa0785170:intron | 20.0% |
| !!! | ACCTCTAATTATTGATTTAT+TGG | + | chr5_2:69939458-69939477 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTGTTATTTTCTT+TGG | + | chr5_2:69939490-69939509 | None:intergenic | 20.0% |
| !! | AACAAAATTATTCTCCAAAA+TGG | + | chr5_2:69940153-69940172 | None:intergenic | 20.0% |
| !! | TTCAATGCAACATTAATTAT+TGG | - | chr5_2:69940197-69940216 | Msa0785170:intron | 20.0% |
| !!! | TAATAGTGATAATGAAATGT+TGG | + | chr5_2:69941187-69941206 | None:intergenic | 20.0% |
| !! | AACATTTCATTATCACTATT+AGG | - | chr5_2:69941186-69941205 | Msa0785170:intron | 20.0% |
| !! | AGTAAAATATTTACGACAAT+TGG | - | chr5_2:69941255-69941274 | Msa0785170:intron | 20.0% |
| !! | GTAAAATATTTACGACAATT+GGG | - | chr5_2:69941256-69941275 | Msa0785170:intron | 20.0% |
| !! | TAAAATATTTACGACAATTG+GGG | - | chr5_2:69941257-69941276 | Msa0785170:intron | 20.0% |
| !!! | AGGTTATATTTATTTCTTCT+TGG | - | chr5_2:69941343-69941362 | Msa0785170:intron | 20.0% |
| !!! | TAAGTAAGTTTTACTCTATT+TGG | - | chr5_2:69941400-69941419 | Msa0785170:intron | 20.0% |
| !!! | GGTTTGTCATTTTAAAAATT+AGG | - | chr5_2:69941990-69942009 | Msa0785170:CDS | 20.0% |
| !! | AAAATCGTGAATTTATATAC+AGG | - | chr5_2:69942018-69942037 | Msa0785170:CDS | 20.0% |
| !! | AAATCGTGAATTTATATACA+GGG | - | chr5_2:69942019-69942038 | Msa0785170:CDS | 20.0% |
| !!! | CTATGTAGTTGTTTGTTATT+GGG | + | chr5_2:69937370-69937389 | Msa0785160:intron | 25.0% |
| !!! | ACTATGTAGTTGTTTGTTAT+TGG | + | chr5_2:69937371-69937390 | Msa0785160:intron | 25.0% |
| ! | TTGAAGAAAAAAAGAAGAAG+AGG | - | chr5_2:69937520-69937539 | Msa0785170:CDS | 25.0% |
| ! | TGAAGAAAAAAAGAAGAAGA+GGG | - | chr5_2:69937521-69937540 | Msa0785170:CDS | 25.0% |
| !!! | TTTTTGTTGTTGTAGATTCA+TGG | - | chr5_2:69937756-69937775 | Msa0785170:CDS | 25.0% |
| ! | ATTAATAGTGCTTATGTTCT+TGG | - | chr5_2:69937809-69937828 | Msa0785170:intron | 25.0% |
| ! | TGATTATCCAAACATAACAT+CGG | + | chr5_2:69938040-69938059 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTAA+CGG | - | chr5_2:69938184-69938203 | Msa0785170:intron | 25.0% |
| !! | TATGGTGTTAAATTTGGAAA+AGG | + | chr5_2:69938506-69938525 | None:intergenic | 25.0% |
| ! | GATTATTCAAAGCAATATGT+AGG | - | chr5_2:69938565-69938584 | Msa0785170:intron | 25.0% |
| !! | AGGTAATGAATTGTTTTCTA+CGG | - | chr5_2:69938585-69938604 | Msa0785170:intron | 25.0% |
| ! | CGAAGAGAATAATGTAATTA+TGG | + | chr5_2:69939045-69939064 | None:intergenic | 25.0% |
| ! | AAGATTAGTAATGAAGACAT+TGG | - | chr5_2:69939329-69939348 | Msa0785170:intron | 25.0% |
| ! | TTAAATCCAAGTCAATCTTA+TGG | + | chr5_2:69939513-69939532 | None:intergenic | 25.0% |
| ! | AAAGAAACAATTAGTTACAG+AGG | + | chr5_2:69940072-69940091 | None:intergenic | 25.0% |
| ! | TCTCTACAATAAATAGGTAA+GGG | + | chr5_2:69940236-69940255 | None:intergenic | 25.0% |
| ! | TTTCTCTCTCTACAATAAAT+AGG | + | chr5_2:69940242-69940261 | None:intergenic | 25.0% |
| ! | ACAACATTTATTTGATTCCT+TGG | - | chr5_2:69940327-69940346 | Msa0785170:intron | 25.0% |
| ! | TAAAGAAATTACACATACCA+AGG | + | chr5_2:69940347-69940366 | None:intergenic | 25.0% |
| !!! | ACTTCAGATAACTAGTTTTA+TGG | - | chr5_2:69940436-69940455 | Msa0785170:intron | 25.0% |
| ! | CAAAATGACATTATATTCCT+TGG | + | chr5_2:69940575-69940594 | None:intergenic | 25.0% |
| !!! | CAAGGAATATAATGTCATTT+TGG | - | chr5_2:69940573-69940592 | Msa0785170:intron | 25.0% |
| !! | GAAACTGTCATTTGATTTAT+CGG | - | chr5_2:69940615-69940634 | Msa0785170:intron | 25.0% |
| !! | AACAAGGTAAAGACAAATTT+TGG | + | chr5_2:69940958-69940977 | None:intergenic | 25.0% |
| !!! | ACAATTGTTTTAACTATGCT+TGG | - | chr5_2:69941134-69941153 | Msa0785170:intron | 25.0% |
| ! | TTAACTATGCTTGGTTAATT+CGG | - | chr5_2:69941143-69941162 | Msa0785170:intron | 25.0% |
| !!! | TTTTTTGCTGAATAATGTCA+AGG | - | chr5_2:69941565-69941584 | Msa0785170:intron | 25.0% |
| !! | TTTTTGCTGAATAATGTCAA+GGG | - | chr5_2:69941566-69941585 | Msa0785170:intron | 25.0% |
| !!! | TTTTAAAAGCAGCAAAGTAT+TGG | + | chr5_2:69941671-69941690 | None:intergenic | 25.0% |
| ! | AAAATGTATAAGTGGAGAAA+AGG | - | chr5_2:69941969-69941988 | Msa0785170:CDS | 25.0% |
| ! | AATCGTGAATTTATATACAG+GGG | - | chr5_2:69942020-69942039 | Msa0785170:CDS | 25.0% |
| !! | GAACTTATCATTTAGAATCT+TGG | - | chr5_2:69942210-69942229 | Msa0785170:intron | 25.0% |
| ! | ATTTGCAAGGATAAATGTAA+GGG | + | chr5_2:69942332-69942351 | None:intergenic | 25.0% |
| ! | TTCCATATTCTTTCAACAAT+TGG | - | chr5_2:69942525-69942544 | Msa0785170:five_prime_UTR | 25.0% |
| !! | GTTTGTTATTGGGTTATCAT+GGG | + | chr5_2:69937360-69937379 | Msa0785160:intron | 30.0% |
| !! | TGTTTGTTATTGGGTTATCA+TGG | + | chr5_2:69937361-69937380 | Msa0785160:intron | 30.0% |
| CTTATGTTCTTGGATATTCA+GGG | - | chr5_2:69937819-69937838 | Msa0785170:intron | 30.0% | |
| ATTGCTATGCTTCATGAATT+TGG | - | chr5_2:69937926-69937945 | Msa0785170:intron | 30.0% | |
| AAATATATCCAGCAAGATCA+CGG | + | chr5_2:69937973-69937992 | None:intergenic | 30.0% | |
| GATCTTGCTGGATATATTTA+TGG | - | chr5_2:69937974-69937993 | Msa0785170:intron | 30.0% | |
| GGTGATATAATCTAGTCAAA+GGG | + | chr5_2:69938019-69938038 | None:intergenic | 30.0% | |
| TATATCACCGATGTTATGTT+TGG | - | chr5_2:69938030-69938049 | Msa0785170:intron | 30.0% | |
| TATGCCATACTATGTTTCAA+TGG | - | chr5_2:69938208-69938227 | Msa0785170:intron | 30.0% | |
| ATGCCATACTATGTTTCAAT+GGG | - | chr5_2:69938209-69938228 | Msa0785170:intron | 30.0% | |
| TGACAACAAGTTCTTGAATT+AGG | + | chr5_2:69938308-69938327 | None:intergenic | 30.0% | |
| GTCATTGAAATTATAAGGGT+TGG | - | chr5_2:69938407-69938426 | Msa0785170:CDS | 30.0% | |
| ATTGATTAGTATCCAGAATC+TGG | - | chr5_2:69938803-69938822 | Msa0785170:intron | 30.0% | |
| GAAGTAGATAAATTGTCAAC+AGG | + | chr5_2:69939205-69939224 | None:intergenic | 30.0% | |
| TTATTGATGAAGTCACAGAA+AGG | + | chr5_2:69939229-69939248 | None:intergenic | 30.0% | |
| CACACAAGAATTGACAAAAA+TGG | + | chr5_2:69939268-69939287 | None:intergenic | 30.0% | |
| CAAAAACCATAAGATTGACT+TGG | - | chr5_2:69939504-69939523 | Msa0785170:intron | 30.0% | |
| GGATTTAAATGATCTGTTAC+TGG | - | chr5_2:69939525-69939544 | Msa0785170:intron | 30.0% | |
| ! | AAACCTTTTTCCATTAGATG+AGG | + | chr5_2:69939592-69939611 | None:intergenic | 30.0% |
| ! | AGGCTGTTTATGTTCTTTTT+AGG | - | chr5_2:69939797-69939816 | Msa0785170:intron | 30.0% |
| ! | GGCTGTTTATGTTCTTTTTA+GGG | - | chr5_2:69939798-69939817 | Msa0785170:intron | 30.0% |
| TGAAAGATGAGGAATACAAA+TGG | + | chr5_2:69939887-69939906 | None:intergenic | 30.0% | |
| CTTGTACTATCACTAAAAGA+TGG | - | chr5_2:69939967-69939986 | Msa0785170:CDS | 30.0% | |
| ATTAATCGAATGAGTGTCAA+TGG | + | chr5_2:69940028-69940047 | None:intergenic | 30.0% | |
| ! | TAATATACTTTTCTGTTCCC+TGG | - | chr5_2:69940044-69940063 | Msa0785170:CDS | 30.0% |
| ! | AATGGACAAGTATTGTGAAA+CGG | + | chr5_2:69940368-69940387 | None:intergenic | 30.0% |
| ! | TTCACAATACTTGTCCATTT+TGG | - | chr5_2:69940136-69940155 | Msa0785170:intron | 30.0% |
| CTCTCTACAATAAATAGGTA+AGG | + | chr5_2:69940237-69940256 | None:intergenic | 30.0% | |
| ! | AATGGACAAGTATTGTGAAA+CGG | - | chr5_2:69940368-69940387 | Msa0785170:intron | 30.0% |
| ! | CATACAAGAAGGATATTTTC+AGG | + | chr5_2:69940654-69940673 | None:intergenic | 30.0% |
| GAAAATATCCTTCTTGTATG+TGG | - | chr5_2:69940654-69940673 | Msa0785170:intron | 30.0% | |
| !! | GGTAAAGACAAATTTTGGAA+AGG | + | chr5_2:69940953-69940972 | None:intergenic | 30.0% |
| !! | TTGTTGTGAAGGCTATTTTA+GGG | - | chr5_2:69940973-69940992 | Msa0785170:CDS | 30.0% |
| TCAATTCATTTAGAGAAGTC+AGG | + | chr5_2:69941050-69941069 | None:intergenic | 30.0% | |
| ! | TTCTTCTTGGAGTTTTTGTT+TGG | - | chr5_2:69941356-69941375 | Msa0785170:intron | 30.0% |
| CTATTTGGTTGTAACCTAAT+AGG | - | chr5_2:69941415-69941434 | Msa0785170:intron | 30.0% | |
| TTCATCATGTTCTTTACAAC+TGG | + | chr5_2:69941455-69941474 | None:intergenic | 30.0% | |
| ! | CTATATTTTCAGTTTACCGT+TGG | - | chr5_2:69941479-69941498 | Msa0785170:intron | 30.0% |
| ! | TATCGTGGATTTAAAACTGA+GGG | + | chr5_2:69941743-69941762 | None:intergenic | 30.0% |
| ! | ATATCGTGGATTTAAAACTG+AGG | + | chr5_2:69941744-69941763 | None:intergenic | 30.0% |
| !!! | CAGTTTTAAATCCACGATAT+TGG | - | chr5_2:69941744-69941763 | Msa0785170:intron | 30.0% |
| !!! | TCAGACGTTTTGAAAATTGA+GGG | + | chr5_2:69941771-69941790 | None:intergenic | 30.0% |
| !!! | ATCAGACGTTTTGAAAATTG+AGG | + | chr5_2:69941772-69941791 | None:intergenic | 30.0% |
| TCAACCTCAAAAGTTTAGAT+GGG | + | chr5_2:69941801-69941820 | None:intergenic | 30.0% | |
| ATCAACCTCAAAAGTTTAGA+TGG | + | chr5_2:69941802-69941821 | None:intergenic | 30.0% | |
| !!! | AAATGAGTTTTTTAGCGAGA+TGG | - | chr5_2:69941880-69941899 | Msa0785170:intron | 30.0% |
| !!! | AATGAGTTTTTTAGCGAGAT+GGG | - | chr5_2:69941881-69941900 | Msa0785170:intron | 30.0% |
| !! | CTGAATTTTGATGATTTGAC+AGG | + | chr5_2:69941945-69941964 | None:intergenic | 30.0% |
| ! | TTCTCCACTTATACATTTTG+AGG | + | chr5_2:69941968-69941987 | None:intergenic | 30.0% |
| ATCGTGAATTTATATACAGG+GGG | - | chr5_2:69942021-69942040 | Msa0785170:CDS | 30.0% | |
| AGTATTTGGATACCAAACAT+GGG | - | chr5_2:69942161-69942180 | Msa0785170:intron | 30.0% | |
| ATACCAAACATGGGATTAAA+GGG | - | chr5_2:69942170-69942189 | Msa0785170:intron | 30.0% | |
| ! | TCATTTAGAATCTTGGTAAG+AGG | - | chr5_2:69942217-69942236 | Msa0785170:intron | 30.0% |
| TTTGCAAGGATAAATGTAAG+GGG | + | chr5_2:69942331-69942350 | None:intergenic | 30.0% | |
| GATTTGCAAGGATAAATGTA+AGG | + | chr5_2:69942333-69942352 | None:intergenic | 30.0% | |
| ! | GTTTGTTCTTATTTGTCACT+AGG | + | chr5_2:69942363-69942382 | None:intergenic | 30.0% |
| TAACATCCATTCAAAAGCTT+TGG | - | chr5_2:69942383-69942402 | Msa0785170:five_prime_UTR | 30.0% | |
| ! | TGCGAAAACATGATAAGTTT+TGG | + | chr5_2:69942488-69942507 | None:intergenic | 30.0% |
| CTCCAATTGTTGAAAGAATA+TGG | + | chr5_2:69942530-69942549 | None:intergenic | 30.0% | |
| ACATCGTTGTTATCAACATC+AGG | + | chr5_2:69937615-69937634 | Msa0785160:CDS | 35.0% | |
| TGTAGATTCATGGTTTCAAG+TGG | - | chr5_2:69937766-69937785 | Msa0785170:intron | 35.0% | |
| ! | GTAGATTCATGGTTTCAAGT+GGG | - | chr5_2:69937767-69937786 | Msa0785170:intron | 35.0% |
| ! | TAGATTCATGGTTTCAAGTG+GGG | - | chr5_2:69937768-69937787 | Msa0785170:intron | 35.0% |
| GCTTATGTTCTTGGATATTC+AGG | - | chr5_2:69937818-69937837 | Msa0785170:intron | 35.0% | |
| CTATGCTTCATGAATTTGGT+GGG | - | chr5_2:69937930-69937949 | Msa0785170:intron | 35.0% | |
| CGGTGATATAATCTAGTCAA+AGG | + | chr5_2:69938020-69938039 | None:intergenic | 35.0% | |
| ! | ATTGTTTTCGTTAGCTATCC+TGG | - | chr5_2:69938149-69938168 | Msa0785170:intron | 35.0% |
| GATCCCATTGAAACATAGTA+TGG | + | chr5_2:69938215-69938234 | None:intergenic | 35.0% | |
| AAGTCAATCTCAATCCAAAC+AGG | - | chr5_2:69938281-69938300 | Msa0785170:CDS | 35.0% | |
| TTCTTGAATTAGGACCTGTT+TGG | + | chr5_2:69938298-69938317 | None:intergenic | 35.0% | |
| ! | TGTCTGAAACTTACAATTCG+AGG | - | chr5_2:69938695-69938714 | Msa0785170:intron | 35.0% |
| !! | ATTGGTTACATCATTTTGGC+TGG | - | chr5_2:69938980-69938999 | Msa0785170:intron | 35.0% |
| ! | GACTAACCTGCTAAAGATTT+TGG | - | chr5_2:69939159-69939178 | Msa0785170:intron | 35.0% |
| CAAGATCCAAAATCTTTAGC+AGG | + | chr5_2:69939168-69939187 | None:intergenic | 35.0% | |
| TGACAAAAATGGAGCAGTTA+AGG | + | chr5_2:69939257-69939276 | None:intergenic | 35.0% | |
| ATGAAGACATTGGAAAGTTG+AGG | - | chr5_2:69939339-69939358 | Msa0785170:intron | 35.0% | |
| TTTGATCTGACCTCATCTAA+TGG | - | chr5_2:69939579-69939598 | Msa0785170:intron | 35.0% | |
| TGACCTCATCTAATGGAAAA+AGG | - | chr5_2:69939586-69939605 | Msa0785170:intron | 35.0% | |
| CTTAGCAGCTTATTCTGTTT+CGG | - | chr5_2:69939627-69939646 | Msa0785170:intron | 35.0% | |
| TTAGCAGCTTATTCTGTTTC+GGG | - | chr5_2:69939628-69939647 | Msa0785170:intron | 35.0% | |
| TTGTTCATTCATTGTTGTGC+AGG | - | chr5_2:69939777-69939796 | Msa0785170:intron | 35.0% | |
| ATCTTTCAGCTCTTGGAATT+TGG | - | chr5_2:69939899-69939918 | Msa0785170:intron | 35.0% | |
| ACTAGAGATAGAAGGAATGA+TGG | + | chr5_2:69940512-69940531 | None:intergenic | 35.0% | |
| ATGTTCAGACTAGAGATAGA+AGG | + | chr5_2:69940520-69940539 | None:intergenic | 35.0% | |
| CTGAAATACCACATACAAGA+AGG | + | chr5_2:69940665-69940684 | None:intergenic | 35.0% | |
| TTGCATCGAGACATAGAAAA+TGG | + | chr5_2:69940798-69940817 | None:intergenic | 35.0% | |
| ! | TTGTCTTTACCTTGTTGTGA+AGG | - | chr5_2:69940962-69940981 | Msa0785170:CDS | 35.0% |
| CTAAAATAGCCTTCACAACA+AGG | + | chr5_2:69940974-69940993 | None:intergenic | 35.0% | |
| !! | CTTGTTGTGAAGGCTATTTT+AGG | - | chr5_2:69940972-69940991 | Msa0785170:CDS | 35.0% |
| AAGCAGTAGATACTTAGACT+CGG | - | chr5_2:69941000-69941019 | Msa0785170:intron | 35.0% | |
| !! | ATTTTACTTGTTGATGTCCC+AGG | + | chr5_2:69941243-69941262 | None:intergenic | 35.0% |
| TTGAATCATACCTGTATCTC+AGG | + | chr5_2:69941324-69941343 | None:intergenic | 35.0% | |
| TGAGATACAGGTATGATTCA+AGG | - | chr5_2:69941323-69941342 | Msa0785170:intron | 35.0% | |
| ATATAATGGCAGAACTCCAA+CGG | + | chr5_2:69941498-69941517 | None:intergenic | 35.0% | |
| GCAAAGGTAACCAGATATAA+TGG | + | chr5_2:69941512-69941531 | None:intergenic | 35.0% | |
| TTATATCTGGTTACCTTTGC+AGG | - | chr5_2:69941512-69941531 | Msa0785170:intron | 35.0% | |
| TATATCTGGTTACCTTTGCA+GGG | - | chr5_2:69941513-69941532 | Msa0785170:intron | 35.0% | |
| TGCAATGACTGATTGAAGAA+AGG | + | chr5_2:69941627-69941646 | None:intergenic | 35.0% | |
| ACCAAAAATCGTGAGACAAA+GGG | + | chr5_2:69941719-69941738 | None:intergenic | 35.0% | |
| ! | ATCGTGGATTTAAAACTGAG+GGG | + | chr5_2:69941742-69941761 | None:intergenic | 35.0% |
| ! | TTTCCCCATCTAAACTTTTG+AGG | - | chr5_2:69941794-69941813 | Msa0785170:intron | 35.0% |
| CAACCTCAAAAGTTTAGATG+GGG | + | chr5_2:69941800-69941819 | None:intergenic | 35.0% | |
| !!! | ATGAGTTTTTTAGCGAGATG+GGG | - | chr5_2:69941882-69941901 | Msa0785170:intron | 35.0% |
| TCAGCCTCAAAATGTATAAG+TGG | - | chr5_2:69941961-69941980 | Msa0785170:CDS | 35.0% | |
| GTATCCAAATACTCGTACAT+CGG | + | chr5_2:69942154-69942173 | None:intergenic | 35.0% | |
| GAGTATTTGGATACCAAACA+TGG | - | chr5_2:69942160-69942179 | Msa0785170:intron | 35.0% | |
| GATACCAAACATGGGATTAA+AGG | - | chr5_2:69942169-69942188 | Msa0785170:intron | 35.0% | |
| ! | TTTAGAATCTTGGTAAGAGG+TGG | - | chr5_2:69942220-69942239 | Msa0785170:intron | 35.0% |
| ! | CTAGGTACATATGATTTGCA+AGG | + | chr5_2:69942345-69942364 | None:intergenic | 35.0% |
| ! | TTTGGCATTGGATCAACATT+TGG | - | chr5_2:69942401-69942420 | Msa0785170:five_prime_UTR | 35.0% |
| ! | GAACGTTTCTGTTGATGAAG+AGG | - | chr5_2:69937572-69937591 | Msa0785170:CDS | 40.0% |
| TGGATATTCAGGGACCATTA+TGG | - | chr5_2:69937829-69937848 | Msa0785170:intron | 40.0% | |
| GCTATGCTTCATGAATTTGG+TGG | - | chr5_2:69937929-69937948 | Msa0785170:intron | 40.0% | |
| ATTAGATACCGTGATCTTGC+TGG | - | chr5_2:69937962-69937981 | Msa0785170:intron | 40.0% | |
| ! | GAAAAGCATATTGCCTCACA+TGG | - | chr5_2:69938924-69938943 | Msa0785170:intron | 40.0% |
| ACTGGACATGATTCACGATA+CGG | - | chr5_2:69939543-69939562 | Msa0785170:intron | 40.0% | |
| TGACTGCACAAACTGAAATC+AGG | + | chr5_2:69939708-69939727 | None:intergenic | 40.0% | |
| TTCAGTTTGTGCAGTCATTC+AGG | - | chr5_2:69939711-69939730 | Msa0785170:intron | 40.0% | |
| ! | TCCACATTTTATCGCCATAG+CGG | - | chr5_2:69939840-69939859 | Msa0785170:intron | 40.0% |
| ATTCCTCATCTTTCAGCTCT+TGG | - | chr5_2:69939892-69939911 | Msa0785170:intron | 40.0% | |
| ATTCCAAGAGCTGAAAGATG+AGG | + | chr5_2:69939898-69939917 | None:intergenic | 40.0% | |
| !!! | AATTTGGCTCGGATTTTCGA+CGG | - | chr5_2:69939915-69939934 | Msa0785170:intron | 40.0% |
| GTGCTATGACAATATATGCG+AGG | + | chr5_2:69939948-69939967 | None:intergenic | 40.0% | |
| !! | AATTAGTTACAGAGGCACCA+GGG | + | chr5_2:69940064-69940083 | None:intergenic | 40.0% |
| ! | GACAAGTATTGTGAAACGGA+GGG | + | chr5_2:69940372-69940391 | None:intergenic | 40.0% |
| ! | GACAAGTATTGTGAAACGGA+GGG | - | chr5_2:69940372-69940391 | Msa0785170:intron | 40.0% |
| TTCATTCTCTCTGCTTACCA+AGG | - | chr5_2:69940555-69940574 | Msa0785170:intron | 40.0% | |
| !!! | ATGTCATTTTGGTCTTCTGC+TGG | - | chr5_2:69940584-69940603 | Msa0785170:intron | 40.0% |
| ! | TTTGGTCTTCTGCTGGTATT+CGG | - | chr5_2:69940591-69940610 | Msa0785170:intron | 40.0% |
| AGATACTTAGACTCGGCTAT+CGG | - | chr5_2:69941007-69941026 | Msa0785170:intron | 40.0% | |
| ! | TATGCTTGGTTAATTCGGTG+TGG | - | chr5_2:69941148-69941167 | Msa0785170:intron | 40.0% |
| !! | ATGCTTGGTTAATTCGGTGT+GGG | - | chr5_2:69941149-69941168 | Msa0785170:intron | 40.0% |
| ATATGCGAACACGAGATTAG+CGG | + | chr5_2:69941286-69941305 | None:intergenic | 40.0% | |
| CTCGTGTTCGCATATAATAC+AGG | - | chr5_2:69941291-69941310 | Msa0785170:intron | 40.0% | |
| TGGAGTTCTGCCATTATATC+TGG | - | chr5_2:69941499-69941518 | Msa0785170:intron | 40.0% | |
| ATAATGTCAAGGGTCCAATC+TGG | - | chr5_2:69941576-69941595 | Msa0785170:intron | 40.0% | |
| TAATGTCAAGGGTCCAATCT+GGG | - | chr5_2:69941577-69941596 | Msa0785170:intron | 40.0% | |
| CAAAAATCGTGAGACAAAGG+GGG | + | chr5_2:69941717-69941736 | None:intergenic | 40.0% | |
| CCAAAAATCGTGAGACAAAG+GGG | + | chr5_2:69941718-69941737 | None:intergenic | 40.0% | |
| GACCAAAAATCGTGAGACAA+AGG | + | chr5_2:69941720-69941739 | None:intergenic | 40.0% | |
| AAATTGAGGGACCAATATCG+TGG | + | chr5_2:69941758-69941777 | None:intergenic | 40.0% | |
| AGAAACTTACGTGACATCTG+AGG | - | chr5_2:69941846-69941865 | Msa0785170:intron | 40.0% | |
| ! | CAGTACCTCATTCACGATTT+TGG | + | chr5_2:69942048-69942067 | None:intergenic | 40.0% |
| ! | ATCTACCAGAAGCATAAGAG+AGG | + | chr5_2:69942121-69942140 | None:intergenic | 40.0% |
| AAGTCCGATGTACGAGTATT+TGG | - | chr5_2:69942147-69942166 | Msa0785170:intron | 40.0% | |
| ACTCCCTTTAATCCCATGTT+TGG | + | chr5_2:69942176-69942195 | None:intergenic | 40.0% | |
| CTCATGAAATCTCCAAGGAA+TGG | + | chr5_2:69942283-69942302 | None:intergenic | 40.0% | |
| ! | CCAATGCCAAAGCTTTTGAA+TGG | + | chr5_2:69942392-69942411 | None:intergenic | 40.0% |
| ! | CCATTCAAAAGCTTTGGCAT+TGG | - | chr5_2:69942389-69942408 | Msa0785170:five_prime_UTR | 40.0% |
| GGTTGTAGCAAAATTCACGC+TGG | - | chr5_2:69937542-69937561 | Msa0785170:CDS | 45.0% | |
| TGTAGCAAAATTCACGCTGG+CGG | - | chr5_2:69937545-69937564 | Msa0785170:CDS | 45.0% | |
| ! | CTGATTTGATGTGCAGTGTC+TGG | + | chr5_2:69937645-69937664 | None:intergenic | 45.0% |
| ACTGCACATCAAATCAGCAC+TGG | - | chr5_2:69937648-69937667 | Msa0785170:CDS | 45.0% | |
| AGGGACCATTATGGTTCCTT+TGG | - | chr5_2:69937838-69937857 | Msa0785170:intron | 45.0% | |
| GGGACCATTATGGTTCCTTT+GGG | - | chr5_2:69937839-69937858 | Msa0785170:intron | 45.0% | |
| CCAACCCAAAGGAACCATAA+TGG | + | chr5_2:69937846-69937865 | None:intergenic | 45.0% | |
| CCATTATGGTTCCTTTGGGT+TGG | - | chr5_2:69937843-69937862 | Msa0785170:intron | 45.0% | |
| !! | ATGGTTCCTTTGGGTTGGAT+AGG | - | chr5_2:69937848-69937867 | Msa0785170:intron | 45.0% |
| CTTATTTCCAGAAGCTCTCC+AGG | + | chr5_2:69938170-69938189 | None:intergenic | 45.0% | |
| TCACACATGCATCCAGATTC+TGG | + | chr5_2:69938818-69938837 | None:intergenic | 45.0% | |
| ! | TTTGGCTGGTTCAGCTTTGA+AGG | - | chr5_2:69938994-69939013 | Msa0785170:intron | 45.0% |
| ! | CCACATTTTATCGCCATAGC+GGG | - | chr5_2:69939841-69939860 | Msa0785170:intron | 45.0% |
| TCAGCTCTTGGAATTTGGCT+CGG | - | chr5_2:69939904-69939923 | Msa0785170:intron | 45.0% | |
| !! | CAATTAGTTACAGAGGCACC+AGG | + | chr5_2:69940065-69940084 | None:intergenic | 45.0% |
| ! | GGACAAGTATTGTGAAACGG+AGG | + | chr5_2:69940371-69940390 | None:intergenic | 45.0% |
| ! | GGACAAGTATTGTGAAACGG+AGG | - | chr5_2:69940371-69940390 | Msa0785170:intron | 45.0% |
| CTATGTCTCGATGCAAGTGA+AGG | - | chr5_2:69940802-69940821 | Msa0785170:intron | 45.0% | |
| GATACTTAGACTCGGCTATC+GGG | - | chr5_2:69941008-69941027 | Msa0785170:intron | 45.0% | |
| CGCGAGATTATAGTGTTCCT+GGG | - | chr5_2:69941223-69941242 | Msa0785170:intron | 45.0% | |
| AGGAATGCTTCCTGAGATAC+AGG | - | chr5_2:69941311-69941330 | Msa0785170:intron | 45.0% | |
| TTGTCTGATCGTCGCCTATT+AGG | + | chr5_2:69941432-69941451 | None:intergenic | 45.0% | |
| TCCAATCTGGGTGAAAGTTG+TGG | - | chr5_2:69941589-69941608 | Msa0785170:intron | 45.0% | |
| ! | CCCCTTTGTCTCACGATTTT+TGG | - | chr5_2:69941715-69941734 | Msa0785170:intron | 45.0% |
| !! | GCAACACTGAATTGATGACG+CGG | + | chr5_2:69941908-69941927 | None:intergenic | 45.0% |
| TTGACAGGTGAAAGCTTGCA+TGG | + | chr5_2:69941930-69941949 | None:intergenic | 45.0% | |
| GATAGCCTCTCTTATGCTTC+TGG | - | chr5_2:69942113-69942132 | Msa0785170:five_prime_UTR | 45.0% | |
| TGAGGCTCATGAAATCTCCA+AGG | + | chr5_2:69942288-69942307 | None:intergenic | 45.0% | |
| TGGAGATTTCATGAGCCTCA+CGG | - | chr5_2:69942288-69942307 | Msa0785170:five_prime_UTR | 45.0% | |
| ! | GTGGGGTTTGTGTTGACAAC+AGG | - | chr5_2:69937785-69937804 | Msa0785170:intron | 50.0% |
| !! | GTTCCTTTGGGTTGGATAGG+TGG | - | chr5_2:69937851-69937870 | Msa0785170:intron | 50.0% |
| ACACCACCTATCCAACCCAA+AGG | + | chr5_2:69937857-69937876 | None:intergenic | 50.0% | |
| !! | GGTTGGATAGGTGGTGTTGT+TGG | - | chr5_2:69937860-69937879 | Msa0785170:intron | 50.0% |
| TAGCTATCCTGGAGAGCTTC+TGG | - | chr5_2:69938160-69938179 | Msa0785170:intron | 50.0% | |
| CATACTGCAGAGTCCATGTG+AGG | + | chr5_2:69938940-69938959 | None:intergenic | 50.0% | |
| CCCGCTATGGCGATAAAATG+TGG | + | chr5_2:69939844-69939863 | None:intergenic | 50.0% | |
| GGAACACTATAATCTCGCGC+TGG | + | chr5_2:69941222-69941241 | None:intergenic | 50.0% | |
| GCGCGAGATTATAGTGTTCC+TGG | - | chr5_2:69941222-69941241 | Msa0785170:intron | 50.0% | |
| TGGTTACCTTTGCAGGGTAC+TGG | - | chr5_2:69941519-69941538 | Msa0785170:intron | 50.0% | |
| ! | GGTTACCTTTGCAGGGTACT+GGG | - | chr5_2:69941520-69941539 | Msa0785170:intron | 50.0% |
| ATATGCCCAGTACCCTGCAA+AGG | + | chr5_2:69941528-69941547 | None:intergenic | 50.0% | |
| !! | TTTGCAGGGTACTGGGCATA+TGG | - | chr5_2:69941527-69941546 | Msa0785170:intron | 50.0% |
| GCCACAACTTTCACCCAGAT+TGG | + | chr5_2:69941593-69941612 | None:intergenic | 50.0% | |
| GGGGACCAAAATCGTGAATG+AGG | - | chr5_2:69942040-69942059 | Msa0785170:CDS | 50.0% | |
| TCAGCTCTACTGCCATTCCT+TGG | - | chr5_2:69942268-69942287 | Msa0785170:five_prime_UTR | 50.0% | |
| GGAGATTTCATGAGCCTCAC+GGG | - | chr5_2:69942289-69942308 | Msa0785170:five_prime_UTR | 50.0% | |
| ATGTGCTTATAGCTCCCGTG+AGG | + | chr5_2:69942306-69942325 | None:intergenic | 50.0% | |
| AGTTGCGGCAACAGACATGA+TGG | + | chr5_2:69942434-69942453 | None:intergenic | 50.0% | |
| TGCACACACAAGTCCCGCTA+TGG | + | chr5_2:69939857-69939876 | None:intergenic | 55.0% | |
| CCGCAGCGCTGCAATAGTTG+CGG | + | chr5_2:69942449-69942468 | None:intergenic | 60.0% | |
| CCGCAACTATTGCAGCGCTG+CGG | - | chr5_2:69942446-69942465 | Msa0785170:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 69937353 | 69942565 | 69937353 | ID=Msa0785170;Name=Msa0785170 |
| chr5_2 | mRNA | 69937353 | 69942565 | 69937353 | ID=Msa0785170-mRNA-1;Parent=Msa0785170;Name=Msa0785170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=394|0.66|0.71|1|0.83|0.85|7|49|370 |
| chr5_2 | exon | 69937353 | 69937779 | 69937353 | ID=Msa0785170-mRNA-1:exon:21096;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69938281 | 69938481 | 69938281 | ID=Msa0785170-mRNA-1:exon:21095;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69938586 | 69938710 | 69938586 | ID=Msa0785170-mRNA-1:exon:21094;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69939930 | 69940119 | 69939930 | ID=Msa0785170-mRNA-1:exon:21093;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69940903 | 69940997 | 69940903 | ID=Msa0785170-mRNA-1:exon:21092;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69941947 | 69942147 | 69941947 | ID=Msa0785170-mRNA-1:exon:21091;Parent=Msa0785170-mRNA-1 |
| chr5_2 | exon | 69942249 | 69942565 | 69942249 | ID=Msa0785170-mRNA-1:exon:21090;Parent=Msa0785170-mRNA-1 |
| chr5_2 | five_prime_UTR | 69942249 | 69942565 | 69942249 | ID=Msa0785170-mRNA-1:five_prime_utr;Parent=Msa0785170-mRNA-1 |
| chr5_2 | five_prime_UTR | 69942071 | 69942147 | 69942071 | ID=Msa0785170-mRNA-1:five_prime_utr;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69941947 | 69942070 | 69941947 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69940903 | 69940997 | 69940903 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69939930 | 69940119 | 69939930 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69938586 | 69938710 | 69938586 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69938281 | 69938481 | 69938281 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | CDS | 69937402 | 69937779 | 69937402 | ID=Msa0785170-mRNA-1:cds;Parent=Msa0785170-mRNA-1 |
| chr5_2 | three_prime_UTR | 69937353 | 69937401 | 69937353 | ID=Msa0785170-mRNA-1:three_prime_utr;Parent=Msa0785170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
