Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817500 | XP_003616546.2 | 92.950 | 383 | 6 | 2 | 1 | 362 | 1 | 383 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817500 | sp|P92961|PROT1_ARATH | 72.585 | 383 | 84 | 2 | 1 | 362 | 60 | 442 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817500 | G7KBU8 | 92.950 | 383 | 6 | 2 | 1 | 362 | 1 | 383 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0785170 | Msa0817500 | 0.868154 | 8.059885e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817500 | MtrunA17_Chr5g0436281 | 92.950 | 383 | 6 | 2 | 1 | 362 | 1 | 383 | 0.0 | 701 |
| Msa0817500 | MtrunA17_Chr3g0112971 | 71.233 | 365 | 84 | 2 | 19 | 362 | 72 | 436 | 0.0 | 527 |
| Msa0817500 | MtrunA17_Chr4g0058161 | 39.844 | 384 | 208 | 4 | 1 | 362 | 68 | 450 | 9.76e-91 | 279 |
| Msa0817500 | MtrunA17_Chr1g0184721 | 31.807 | 393 | 234 | 8 | 1 | 362 | 51 | 440 | 5.00e-47 | 165 |
| Msa0817500 | MtrunA17_Chr1g0198081 | 31.139 | 395 | 231 | 10 | 4 | 361 | 90 | 480 | 7.92e-44 | 157 |
| Msa0817500 | MtrunA17_Chr4g0027241 | 28.463 | 397 | 241 | 10 | 4 | 362 | 71 | 462 | 1.30e-36 | 137 |
| Msa0817500 | MtrunA17_Chr8g0387941 | 28.834 | 326 | 210 | 7 | 52 | 359 | 126 | 447 | 8.50e-33 | 127 |
| Msa0817500 | MtrunA17_Chr5g0430221 | 55.652 | 115 | 13 | 1 | 248 | 362 | 63 | 139 | 3.34e-30 | 113 |
| Msa0817500 | MtrunA17_Chr5g0430221 | 85.106 | 47 | 7 | 0 | 77 | 123 | 1 | 47 | 1.28e-19 | 84.3 |
| Msa0817500 | MtrunA17_Chr2g0331721 | 28.792 | 389 | 238 | 13 | 1 | 356 | 75 | 457 | 1.70e-27 | 112 |
| Msa0817500 | MtrunA17_Chr4g0057851 | 25.964 | 389 | 248 | 12 | 1 | 356 | 38 | 419 | 5.56e-22 | 96.7 |
| Msa0817500 | MtrunA17_Chr5g0422741 | 26.221 | 389 | 253 | 12 | 1 | 359 | 54 | 438 | 4.44e-21 | 94.0 |
| Msa0817500 | MtrunA17_Chr8g0384661 | 25.899 | 417 | 241 | 15 | 4 | 359 | 81 | 490 | 1.71e-20 | 92.4 |
| Msa0817500 | MtrunA17_Chr6g0459021 | 26.276 | 392 | 251 | 13 | 1 | 360 | 62 | 447 | 1.75e-20 | 92.4 |
| Msa0817500 | MtrunA17_Chr3g0125091 | 25.714 | 420 | 246 | 14 | 4 | 362 | 65 | 479 | 3.84e-20 | 91.7 |
| Msa0817500 | MtrunA17_Chr6g0459011 | 25.964 | 389 | 246 | 10 | 1 | 355 | 13 | 393 | 1.81e-19 | 89.0 |
| Msa0817500 | MtrunA17_Chr3g0140761 | 25.059 | 423 | 242 | 16 | 4 | 359 | 64 | 478 | 4.62e-19 | 88.2 |
| Msa0817500 | MtrunA17_Chr6g0458931 | 24.311 | 399 | 250 | 12 | 1 | 360 | 70 | 455 | 7.55e-19 | 87.4 |
| Msa0817500 | MtrunA17_Chr2g0328081 | 27.326 | 344 | 232 | 9 | 31 | 360 | 89 | 428 | 7.63e-19 | 87.4 |
| Msa0817500 | MtrunA17_Chr3g0125101 | 25.359 | 418 | 244 | 14 | 4 | 359 | 65 | 476 | 1.16e-18 | 87.0 |
| Msa0817500 | MtrunA17_Chr3g0125081 | 25.476 | 420 | 246 | 14 | 4 | 362 | 65 | 478 | 1.72e-18 | 86.7 |
| Msa0817500 | MtrunA17_Chr1g0159761 | 25.067 | 371 | 220 | 9 | 4 | 316 | 58 | 428 | 1.94e-18 | 86.3 |
| Msa0817500 | MtrunA17_Chr8g0376991 | 25.189 | 397 | 249 | 14 | 1 | 360 | 51 | 436 | 2.10e-18 | 86.3 |
| Msa0817500 | MtrunA17_Chr3g0122921 | 26.700 | 397 | 225 | 16 | 1 | 360 | 61 | 428 | 6.69e-18 | 84.7 |
| Msa0817500 | MtrunA17_Chr1g0198531 | 24.872 | 390 | 257 | 12 | 1 | 359 | 52 | 436 | 7.11e-18 | 84.3 |
| Msa0817500 | MtrunA17_Chr6g0458921 | 26.343 | 391 | 253 | 10 | 1 | 360 | 42 | 428 | 1.42e-17 | 83.6 |
| Msa0817500 | MtrunA17_Chr3g0130641 | 25.240 | 416 | 249 | 15 | 4 | 361 | 64 | 475 | 1.55e-17 | 83.6 |
| Msa0817500 | MtrunA17_Chr1g0198541 | 25.765 | 392 | 251 | 15 | 1 | 359 | 52 | 436 | 2.59e-17 | 82.8 |
| Msa0817500 | MtrunA17_Chr1g0146491 | 24.466 | 421 | 247 | 17 | 4 | 359 | 54 | 468 | 3.87e-17 | 82.4 |
| Msa0817500 | MtrunA17_Chr4g0027261 | 32.632 | 190 | 117 | 5 | 181 | 362 | 1 | 187 | 6.35e-17 | 78.2 |
| Msa0817500 | MtrunA17_Chr4g0037201 | 24.709 | 429 | 240 | 15 | 4 | 359 | 90 | 508 | 1.71e-16 | 80.5 |
| Msa0817500 | MtrunA17_Chr6g0459031 | 25.831 | 391 | 255 | 10 | 1 | 360 | 42 | 428 | 3.12e-16 | 79.7 |
| Msa0817500 | MtrunA17_Chr3g0130651 | 25.067 | 371 | 214 | 13 | 4 | 316 | 57 | 421 | 4.15e-16 | 79.3 |
| Msa0817500 | MtrunA17_Chr7g0230011 | 26.020 | 392 | 252 | 13 | 1 | 360 | 58 | 443 | 9.00e-16 | 78.2 |
| Msa0817500 | MtrunA17_Chr3g0077651 | 24.069 | 403 | 244 | 13 | 4 | 360 | 83 | 469 | 1.76e-15 | 77.4 |
| Msa0817500 | MtrunA17_Chr1g0146391 | 21.241 | 419 | 267 | 12 | 1 | 360 | 40 | 454 | 2.62e-14 | 73.9 |
| Msa0817500 | MtrunA17_Chr1g0206871 | 23.077 | 429 | 254 | 16 | 4 | 361 | 46 | 469 | 3.75e-14 | 73.6 |
| Msa0817500 | MtrunA17_Chr6g0459001 | 25.522 | 431 | 246 | 11 | 1 | 360 | 50 | 476 | 5.55e-13 | 69.7 |
| Msa0817500 | MtrunA17_Chr1g0206851 | 23.057 | 386 | 221 | 14 | 7 | 359 | 35 | 377 | 3.22e-12 | 67.0 |
| Msa0817500 | MtrunA17_Chr5g0447221 | 23.134 | 402 | 242 | 13 | 4 | 346 | 60 | 453 | 2.70e-11 | 64.7 |
| Msa0817500 | MtrunA17_Chr3g0103221 | 23.469 | 392 | 233 | 15 | 4 | 335 | 61 | 445 | 4.65e-11 | 63.9 |
| Msa0817500 | MtrunA17_Chr2g0293331 | 21.053 | 418 | 263 | 14 | 4 | 360 | 43 | 454 | 6.63e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817500 | AT2G39890.2 | 72.585 | 383 | 84 | 2 | 1 | 362 | 60 | 442 | 0.0 | 570 |
| Msa0817500 | AT2G39890.1 | 72.585 | 383 | 84 | 2 | 1 | 362 | 60 | 442 | 0.0 | 570 |
| Msa0817500 | AT2G39890.3 | 72.585 | 383 | 84 | 2 | 1 | 362 | 1 | 383 | 0.0 | 569 |
| Msa0817500 | AT3G55740.1 | 71.540 | 383 | 88 | 2 | 1 | 362 | 57 | 439 | 0.0 | 561 |
| Msa0817500 | AT3G55740.2 | 71.540 | 383 | 88 | 2 | 1 | 362 | 1 | 383 | 0.0 | 559 |
| Msa0817500 | AT3G55740.3 | 71.540 | 383 | 88 | 2 | 1 | 362 | 1 | 383 | 0.0 | 559 |
| Msa0817500 | AT2G36590.1 | 72.846 | 383 | 83 | 2 | 1 | 362 | 54 | 436 | 0.0 | 544 |
| Msa0817500 | AT2G36590.2 | 73.047 | 256 | 53 | 1 | 1 | 240 | 54 | 309 | 1.92e-133 | 384 |
| Msa0817500 | AT1G08230.2 | 26.829 | 410 | 233 | 10 | 4 | 362 | 58 | 451 | 1.36e-34 | 132 |
| Msa0817500 | AT1G08230.4 | 30.887 | 327 | 197 | 8 | 58 | 362 | 13 | 332 | 1.15e-33 | 127 |
| Msa0817500 | AT1G08230.6 | 30.887 | 327 | 197 | 8 | 58 | 362 | 13 | 332 | 1.15e-33 | 127 |
| Msa0817500 | AT1G08230.5 | 30.887 | 327 | 197 | 8 | 58 | 362 | 13 | 332 | 1.15e-33 | 127 |
| Msa0817500 | AT1G08230.3 | 28.274 | 336 | 194 | 7 | 58 | 362 | 32 | 351 | 1.81e-33 | 127 |
| Msa0817500 | AT5G41800.1 | 28.049 | 328 | 214 | 8 | 52 | 361 | 125 | 448 | 4.97e-31 | 122 |
| Msa0817500 | AT5G40780.3 | 26.010 | 396 | 247 | 12 | 1 | 360 | 13 | 398 | 1.17e-23 | 101 |
| Msa0817500 | AT5G40780.2 | 26.010 | 396 | 247 | 12 | 1 | 360 | 13 | 398 | 1.17e-23 | 101 |
| Msa0817500 | AT5G40780.1 | 26.010 | 396 | 247 | 12 | 1 | 360 | 61 | 446 | 1.66e-23 | 101 |
| Msa0817500 | AT1G24400.1 | 26.972 | 393 | 247 | 13 | 1 | 360 | 56 | 441 | 2.10e-21 | 95.5 |
| Msa0817500 | AT1G44100.1 | 25.761 | 427 | 238 | 17 | 4 | 359 | 58 | 476 | 2.81e-20 | 92.4 |
| Msa0817500 | AT1G67640.1 | 26.154 | 390 | 254 | 11 | 1 | 360 | 56 | 441 | 2.85e-20 | 92.0 |
| Msa0817500 | AT1G48640.1 | 24.552 | 391 | 259 | 11 | 1 | 360 | 68 | 453 | 4.08e-20 | 91.7 |
| Msa0817500 | AT5G09220.1 | 25.837 | 418 | 244 | 16 | 4 | 359 | 76 | 489 | 2.74e-19 | 89.4 |
| Msa0817500 | AT5G63850.1 | 23.333 | 420 | 252 | 14 | 4 | 359 | 49 | 462 | 7.12e-18 | 85.1 |
| Msa0817500 | AT1G77380.1 | 25.537 | 419 | 243 | 16 | 4 | 359 | 60 | 472 | 1.56e-17 | 84.0 |
| Msa0817500 | AT1G61270.1 | 24.934 | 377 | 249 | 8 | 1 | 346 | 61 | 434 | 2.96e-16 | 80.1 |
| Msa0817500 | AT1G71680.1 | 24.808 | 391 | 259 | 10 | 1 | 360 | 62 | 448 | 3.82e-16 | 79.7 |
| Msa0817500 | AT3G01760.1 | 24.274 | 379 | 250 | 10 | 1 | 346 | 59 | 433 | 2.79e-15 | 77.4 |
| Msa0817500 | AT1G25530.1 | 26.756 | 299 | 177 | 9 | 78 | 360 | 168 | 440 | 3.87e-15 | 76.6 |
| Msa0817500 | AT1G10010.1 | 23.571 | 420 | 257 | 12 | 4 | 362 | 58 | 474 | 1.47e-12 | 68.9 |
| Msa0817500 | AT1G10010.2 | 23.571 | 420 | 257 | 12 | 4 | 362 | 59 | 475 | 1.64e-12 | 68.9 |
| Msa0817500 | AT1G58360.1 | 23.741 | 417 | 254 | 14 | 4 | 359 | 67 | 480 | 2.27e-11 | 65.5 |
| Msa0817500 | AT1G71680.2 | 25.758 | 264 | 168 | 8 | 1 | 238 | 62 | 323 | 9.56e-11 | 63.2 |
Find 100 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTGTTTATGTTCTATTT+AGG | 0.133427 | 5_3:+52856528 | Msa0817500:intron |
| ATTGCTATGCTTCATGAATT+TGG | 0.182375 | 5_3:+52854729 | Msa0817500:CDS |
| GTACTATAGTTGTTTGTTAT+TGG | 0.191748 | 5_3:-52854150 | None:intergenic |
| ATCTTTCAGCTCTAGGAATT+TGG | 0.207520 | 5_3:+52856630 | Msa0817500:CDS |
| AAATATTGGCTACATCATTT+TGG | 0.209110 | 5_3:+52855771 | Msa0817500:CDS |
| GCTTATGTTCTTGGATATTC+AGG | 0.210818 | 5_3:+52854621 | Msa0817500:five_prime_UTR |
| ATTAATAGTGCTTATGTTCT+TGG | 0.237548 | 5_3:+52854612 | Msa0817500:five_prime_UTR |
| GATACCAAACATGGGATTAA+AGG | 0.240091 | 5_3:+52858606 | Msa0817500:CDS |
| CTCCGATTGTTGAAAGAATA+TGG | 0.242226 | 5_3:-52858964 | None:intergenic |
| AGTAAAATATTTACGACAAT+TGG | 0.244065 | 5_3:+52857696 | Msa0817500:CDS |
| TTATATCTGGTTACCTTTGC+AGG | 0.244416 | 5_3:+52857950 | Msa0817500:CDS |
| TGGTTACCTTTGCAGGGTAC+TGG | 0.248587 | 5_3:+52857957 | Msa0817500:CDS |
| TACTATAGTTGTTTGTTATT+GGG | 0.252176 | 5_3:-52854149 | None:intergenic |
| GGCTGTTTATGTTCTATTTA+GGG | 0.253457 | 5_3:+52856529 | Msa0817500:intron |
| AAGTCCGATGTACGAGTATT+TGG | 0.263204 | 5_3:+52858584 | Msa0817500:CDS |
| GAACTTATCATTTAGAATCT+TGG | 0.267192 | 5_3:+52858647 | Msa0817500:CDS |
| TTTGCAGGGTACTGGGCTTA+TGG | 0.272236 | 5_3:+52857965 | Msa0817500:CDS |
| AGGGACCATTATGGTTCCTT+TGG | 0.291528 | 5_3:+52854641 | Msa0817500:exon |
| CAAACTACTTATAAAAGATT+TGG | 0.296774 | 5_3:+52854223 | Msa0817500:five_prime_UTR |
| TGTTTGTTATTGGGTTATCA+TGG | 0.310826 | 5_3:-52854140 | None:intergenic |
| TGGAGTTCTGCCATTATATC+TGG | 0.316550 | 5_3:+52857937 | Msa0817500:CDS |
| TGGATATTCAGGGACCATTA+TGG | 0.319732 | 5_3:+52854632 | Msa0817500:exon |
| TTCATCATGTTCTTTACAAC+TGG | 0.341148 | 5_3:-52857890 | None:intergenic |
| GTAAAATATTTACGACAATT+GGG | 0.357812 | 5_3:+52857697 | Msa0817500:CDS |
| GGGACCATTATGGTTCCTTT+GGG | 0.360448 | 5_3:+52854642 | Msa0817500:exon |
| TTCCATATTCTTTCAACAAT+CGG | 0.362905 | 5_3:+52858962 | Msa0817500:three_prime_UTR |
| GGTTGGATAGGTGGTGTTGT+TGG | 0.363628 | 5_3:+52854663 | Msa0817500:CDS |
| CCATTATGGTTCCTTTGGGT+TGG | 0.367229 | 5_3:+52854646 | Msa0817500:exon |
| GCGCGAGATTATAGTGTTCC+TGG | 0.367524 | 5_3:+52857663 | Msa0817500:CDS |
| TAACATCCATTCAAAAGCTT+TGG | 0.380271 | 5_3:+52858820 | Msa0817500:CDS |
| TTTGGCTGGTTCGGCTTTGA+AGG | 0.383069 | 5_3:+52855789 | Msa0817500:CDS |
| ACTCCCTTTAATCCCATGTT+TGG | 0.383334 | 5_3:-52858610 | None:intergenic |
| GCCACAACTTTCACCCAGAT+TGG | 0.385424 | 5_3:-52858028 | None:intergenic |
| TTTGGCATTGGATCAACATT+TGG | 0.387263 | 5_3:+52858838 | Msa0817500:CDS |
| GCAAAGGTAACCAGATATAA+TGG | 0.392872 | 5_3:-52857947 | None:intergenic |
| ATTCCTCATCTTTCAGCTCT+AGG | 0.412939 | 5_3:+52856623 | Msa0817500:CDS |
| ATGGTTCCTTTGGGTTGGAT+AGG | 0.421589 | 5_3:+52854651 | Msa0817500:CDS |
| CTGATTTGATGTGCAGTGTC+TGG | 0.427222 | 5_3:-52854444 | None:intergenic |
| CCATTCAAAAGCTTTGGCAT+TGG | 0.427620 | 5_3:+52858826 | Msa0817500:CDS |
| GGTTACCTTTGCAGGGTACT+GGG | 0.432447 | 5_3:+52857958 | Msa0817500:CDS |
| GTGGGGTTTGTGTTGACAAC+GGG | 0.444259 | 5_3:+52854588 | Msa0817500:five_prime_UTR |
| ATAATGTCAAGGGTCCAATC+TGG | 0.445142 | 5_3:+52858014 | Msa0817500:CDS |
| AGGAATGCTTCCTGAGATAC+AGG | 0.446567 | 5_3:+52857752 | Msa0817500:CDS |
| GTTTGTTATTGGGTTATCAT+GGG | 0.451135 | 5_3:-52854139 | None:intergenic |
| TATTACAGCCTTTCTTCAAT+CGG | 0.454235 | 5_3:+52858054 | Msa0817500:CDS |
| TCATTTAGAATCTTGGTAAG+AGG | 0.460627 | 5_3:+52858654 | Msa0817500:CDS |
| ATACCAAACATGGGATTAAA+GGG | 0.462442 | 5_3:+52858607 | Msa0817500:CDS |
| GATTTGCAAGGATAAATGTA+AGG | 0.470613 | 5_3:-52858767 | None:intergenic |
| CTTATGTTCTTGGATATTCA+GGG | 0.476371 | 5_3:+52854622 | Msa0817500:five_prime_UTR |
| GTTCCTTTGGGTTGGATAGG+TGG | 0.476872 | 5_3:+52854654 | Msa0817500:CDS |
| TTGAATCATACCTGTATCTC+AGG | 0.478561 | 5_3:-52857762 | None:intergenic |
| ACATCGTTGTTATCAACATC+AGG | 0.480642 | 5_3:-52854414 | None:intergenic |
| GTTTGTTCTTATTTGTCACT+AGG | 0.484789 | 5_3:-52858797 | None:intergenic |
| CTCGTGTTCGCATATAATAC+AGG | 0.485270 | 5_3:+52857732 | Msa0817500:CDS |
| TCAGCTCTAGGAATTTGGCT+TGG | 0.498609 | 5_3:+52856635 | Msa0817500:CDS |
| TCAGCTCTACTGCCATTCCT+TGG | 0.498923 | 5_3:+52858705 | Msa0817500:CDS |
| TAGATTCATGGTTTCAAGTG+GGG | 0.513864 | 5_3:+52854571 | Msa0817500:intron |
| GAACGTTTCTGTTGATGAAG+AGG | 0.516016 | 5_3:+52854374 | Msa0817500:five_prime_UTR |
| GGAGATTTCATGAGCCTCAC+GGG | 0.518640 | 5_3:+52858726 | Msa0817500:CDS |
| CGCGAGATTATAGTGTTCCT+GGG | 0.519600 | 5_3:+52857664 | Msa0817500:CDS |
| TGAAAGATGAGGAATACAAA+TGG | 0.520939 | 5_3:-52856615 | None:intergenic |
| TGCAATGACCGATTGAAGAA+AGG | 0.521349 | 5_3:-52858062 | None:intergenic |
| CCAACCCAAAGGAACCATAA+TGG | 0.524633 | 5_3:-52854646 | None:intergenic |
| TATATCTGGTTACCTTTGCA+GGG | 0.525745 | 5_3:+52857951 | Msa0817500:CDS |
| TGGAGATTTCATGAGCCTCA+CGG | 0.525781 | 5_3:+52858725 | Msa0817500:CDS |
| ATTTGCAAGGATAAATGTAA+GGG | 0.535895 | 5_3:-52858766 | None:intergenic |
| CTTGTACTGTCACTAAAAGA+TGG | 0.543411 | 5_3:+52856698 | Msa0817500:CDS |
| ATATGCGAACACGAGATTAG+CGG | 0.554545 | 5_3:-52857724 | None:intergenic |
| TAAAATATTTACGACAATTG+GGG | 0.554830 | 5_3:+52857698 | Msa0817500:CDS |
| TAATGTCAAGGGTCCAATCT+GGG | 0.555099 | 5_3:+52858015 | Msa0817500:CDS |
| TGTAGATTCATGGTTTCAAG+TGG | 0.557082 | 5_3:+52854569 | Msa0817500:intron |
| GTAGATTCATGGTTTCAAGT+GGG | 0.559483 | 5_3:+52854570 | Msa0817500:intron |
| TGCACACACAAGTCCAGCTA+TGG | 0.562499 | 5_3:-52856585 | None:intergenic |
| CCGCAGCGCTGCAATAGTTG+CGG | 0.572180 | 5_3:-52858883 | None:intergenic |
| AGTTGCGGCAACAGACATGA+TGG | 0.574833 | 5_3:-52858868 | None:intergenic |
| TCCAATCTGGGTGAAAGTTG+TGG | 0.575627 | 5_3:+52858027 | Msa0817500:CDS |
| CTCATGAAATCTCCAAGGAA+TGG | 0.583815 | 5_3:-52858717 | None:intergenic |
| TCATCAACAACATAAACAAG+TGG | 0.586715 | 5_3:+52854198 | Msa0817500:five_prime_UTR |
| GTATCCAAATACTCGTACAT+CGG | 0.587381 | 5_3:-52858588 | None:intergenic |
| GAGTATTTGGATACCAAACA+TGG | 0.591198 | 5_3:+52858597 | Msa0817500:CDS |
| CCAGCTATGGCAATAAAATG+TGG | 0.593703 | 5_3:-52856572 | None:intergenic |
| TTTAGAATCTTGGTAAGAGG+TGG | 0.593972 | 5_3:+52858657 | Msa0817500:CDS |
| ATTCCTAGAGCTGAAAGATG+AGG | 0.616962 | 5_3:-52856626 | None:intergenic |
| ACTGCACATCAAATCAGCAC+TGG | 0.622058 | 5_3:+52854450 | Msa0817500:five_prime_UTR |
| AGTGGGGTTTGTGTTGACAA+CGG | 0.623484 | 5_3:+52854587 | Msa0817500:five_prime_UTR |
| CTAGGTACATATGATTTGCA+AGG | 0.626482 | 5_3:-52858779 | None:intergenic |
| GAAAAGCATATTGCCTCACG+TGG | 0.629502 | 5_3:+52855719 | Msa0817500:CDS |
| GGAACACTATAATCTCGCGC+TGG | 0.631796 | 5_3:-52857660 | None:intergenic |
| ATATAATGGCAGAACTCCAA+CGG | 0.633354 | 5_3:-52857933 | None:intergenic |
| ATAAGCCCAGTACCCTGCAA+AGG | 0.654594 | 5_3:-52857963 | None:intergenic |
| CCGCAACTATTGCAGCGCTG+CGG | 0.655381 | 5_3:+52858883 | Msa0817500:CDS |
| TTTGCAAGGATAAATGTAAG+GGG | 0.658355 | 5_3:-52858765 | None:intergenic |
| TGAGGCTCATGAAATCTCCA+AGG | 0.658818 | 5_3:-52858722 | None:intergenic |
| ACACCACCTATCCAACCCAA+AGG | 0.675537 | 5_3:-52854657 | None:intergenic |
| TGTAGCAAAATTCACGCTGG+CGG | 0.681047 | 5_3:+52854347 | Msa0817500:five_prime_UTR |
| GTGCTATGACAATATATGCG+AGG | 0.685612 | 5_3:-52856676 | None:intergenic |
| AGTATTTGGATACCAAACAT+GGG | 0.691576 | 5_3:+52858598 | Msa0817500:CDS |
| GGTTGTAGCAAAATTCACGC+TGG | 0.691636 | 5_3:+52854344 | Msa0817500:five_prime_UTR |
| CATACTGCAGAGTCCACGTG+AGG | 0.734328 | 5_3:-52855732 | None:intergenic |
| ATGTGCTTATAGCTCCCGTG+AGG | 0.755171 | 5_3:-52858740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAAACTAACAATA+CGG | - | chr5_3:52857227-52857246 | None:intergenic | 10.0% |
| !!! | ATTCAAGTTATAAAATATTT+AGG | - | chr5_3:52858516-52858535 | None:intergenic | 10.0% |
| !!! | AATCTTTTCATGATAAATAT+TGG | + | chr5_3:52855757-52855776 | Msa0817500:CDS | 15.0% |
| !!! | TTTGGTAATTTTTGATTTAT+TGG | - | chr5_3:52856247-52856266 | None:intergenic | 15.0% |
| !!! | TTTTTGCTTAATATTTTCTT+TGG | - | chr5_3:52856265-52856284 | None:intergenic | 15.0% |
| !! | TAAATATAAACTAACAATAC+GGG | - | chr5_3:52857226-52857245 | None:intergenic | 15.0% |
| !! | AGTAAAACTTACTTAAAAAA+TGG | - | chr5_3:52857833-52857852 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTAGTTTAGATG+TGG | + | chr5_3:52858122-52858141 | Msa0817500:intron | 15.0% |
| !!! | TACTATAGTTGTTTGTTATT+GGG | - | chr5_3:52854152-52854171 | None:intergenic | 20.0% |
| !! | CAAACTACTTATAAAAGATT+TGG | + | chr5_3:52854223-52854242 | Msa0817500:five_prime_UTR | 20.0% |
| !!! | GAAAATGAAAATTTTGTTCA+TGG | - | chr5_3:52854273-52854292 | None:intergenic | 20.0% |
| !!! | TATTGAATAAATCAGCTTTT+TGG | + | chr5_3:52855181-52855200 | Msa0817500:intron | 20.0% |
| !!! | TTTTGGTCATTGAAATTATA+AGG | + | chr5_3:52855198-52855217 | Msa0817500:intron | 20.0% |
| !! | TTTGGTCATTGAAATTATAA+GGG | + | chr5_3:52855199-52855218 | Msa0817500:intron | 20.0% |
| !! | AATTTGCAAAATGACAATTT+AGG | + | chr5_3:52855242-52855261 | Msa0817500:intron | 20.0% |
| !! | ACATAGAATCTTCAAAATTA+CGG | - | chr5_3:52855320-52855339 | None:intergenic | 20.0% |
| !! | AAAATAATGTCTGTCAATTT+AGG | - | chr5_3:52855424-52855443 | None:intergenic | 20.0% |
| !!! | AATTGCTATTTCAAAAATTG+AGG | + | chr5_3:52855457-52855476 | Msa0817500:intron | 20.0% |
| !!! | ATTGCTATTTCAAAAATTGA+GGG | + | chr5_3:52855458-52855477 | Msa0817500:intron | 20.0% |
| !!! | TTTTCTACCTACAATAAAAA+TGG | - | chr5_3:52855704-52855723 | None:intergenic | 20.0% |
| !! | TGAAGAGAATAATGTAATTA+TGG | - | chr5_3:52855840-52855859 | None:intergenic | 20.0% |
| !! | TCATGTTAATTATGAATTAG+CGG | + | chr5_3:52856091-52856110 | Msa0817500:intron | 20.0% |
| !!! | TTAAATCCAACTCAATTTTA+AGG | - | chr5_3:52856288-52856307 | None:intergenic | 20.0% |
| !! | AAAGAAACAATTAATTACAG+AGG | - | chr5_3:52856842-52856861 | None:intergenic | 20.0% |
| !!! | TAATAGTGATAATGAAATGT+TGG | - | chr5_3:52857628-52857647 | None:intergenic | 20.0% |
| !! | AACATTTCATTATCACTATT+AGG | + | chr5_3:52857627-52857646 | Msa0817500:intron | 20.0% |
| !! | AGTAAAATATTTACGACAAT+TGG | + | chr5_3:52857696-52857715 | Msa0817500:CDS | 20.0% |
| !! | GTAAAATATTTACGACAATT+GGG | + | chr5_3:52857697-52857716 | Msa0817500:CDS | 20.0% |
| !! | TAAAATATTTACGACAATTG+GGG | + | chr5_3:52857698-52857717 | Msa0817500:CDS | 20.0% |
| !!! | TAAGTAAGTTTTACTCTATT+TGG | + | chr5_3:52857838-52857857 | Msa0817500:intron | 20.0% |
| !!! | GGTTTGTCATTTTAAAAATT+AGG | + | chr5_3:52858427-52858446 | Msa0817500:intron | 20.0% |
| !!! | GTACTATAGTTGTTTGTTAT+TGG | - | chr5_3:52854153-52854172 | None:intergenic | 25.0% |
| ! | TTGAAGAAAAAAAGAAGAAG+AGG | + | chr5_3:52854322-52854341 | Msa0817500:five_prime_UTR | 25.0% |
| ! | TGAAGAAAAAAAGAAGAAGA+GGG | + | chr5_3:52854323-52854342 | Msa0817500:five_prime_UTR | 25.0% |
| !!! | TTTTTGTTGTTGTAGATTCA+TGG | + | chr5_3:52854559-52854578 | Msa0817500:intron | 25.0% |
| ! | ATTAATAGTGCTTATGTTCT+TGG | + | chr5_3:52854612-52854631 | Msa0817500:five_prime_UTR | 25.0% |
| ! | AGTGATATAATCTAGTCAAA+GGG | - | chr5_3:52854823-52854842 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+CGG | + | chr5_3:52854987-52855006 | Msa0817500:intron | 25.0% |
| ! | TAACAACAAGTTCTTGAATT+AGG | - | chr5_3:52855103-52855122 | None:intergenic | 25.0% |
| !! | CAAAATTACGGTGTTAAATT+TGG | - | chr5_3:52855308-52855327 | None:intergenic | 25.0% |
| ! | GATTATTCAAAGCAATATGT+AGG | + | chr5_3:52855360-52855379 | Msa0817500:intron | 25.0% |
| !!! | AGGTAATGAATTGTTTTGTA+CGG | + | chr5_3:52855380-52855399 | Msa0817500:intron | 25.0% |
| !!! | GTTTGTTCCATTTTTATTGT+AGG | + | chr5_3:52855694-52855713 | Msa0817500:intron | 25.0% |
| !!! | AAATATTGGCTACATCATTT+TGG | + | chr5_3:52855771-52855790 | Msa0817500:CDS | 25.0% |
| ! | CACACAAGAATTGATAAAAA+TGG | - | chr5_3:52856064-52856083 | None:intergenic | 25.0% |
| !! | TTTTACATTTTCTGTGTATG+TGG | + | chr5_3:52856157-52856176 | Msa0817500:intron | 25.0% |
| ! | CAAAAACCTTAAAATTGAGT+TGG | + | chr5_3:52856279-52856298 | Msa0817500:intron | 25.0% |
| ! | TAATGTACATGTTTAATGCT+TGG | + | chr5_3:52856799-52856818 | Msa0817500:intron | 25.0% |
| !! | ACATACAAAAGGATATTTTC+AGG | - | chr5_3:52857115-52857134 | None:intergenic | 25.0% |
| !! | TCTGAAATACTACATACAAA+AGG | - | chr5_3:52857126-52857145 | None:intergenic | 25.0% |
| !! | AACAAGGTAAAGACAAATTT+TGG | - | chr5_3:52857416-52857435 | None:intergenic | 25.0% |
| !! | TCAAGGATATTATTTCTTCT+TGG | + | chr5_3:52857781-52857800 | Msa0817500:intron | 25.0% |
| !!! | TTTTTTGCTGAATAATGTCA+AGG | + | chr5_3:52858003-52858022 | Msa0817500:CDS | 25.0% |
| !! | TTTTTGCTGAATAATGTCAA+GGG | + | chr5_3:52858004-52858023 | Msa0817500:CDS | 25.0% |
| !!! | TTTTAAAAGCAGCAAAGTAT+TGG | - | chr5_3:52858109-52858128 | None:intergenic | 25.0% |
| !!! | ATCAGACGTTTTTGAAAATT+GGG | - | chr5_3:52858211-52858230 | None:intergenic | 25.0% |
| !!! | TATCAGACGTTTTTGAAAAT+TGG | - | chr5_3:52858212-52858231 | None:intergenic | 25.0% |
| ! | AAAATGTATAAGTGGAGAAA+AGG | + | chr5_3:52858406-52858425 | Msa0817500:intron | 25.0% |
| ! | AAAATCGTGAATTTAGATAC+AGG | + | chr5_3:52858455-52858474 | Msa0817500:intron | 25.0% |
| ! | AAATCGTGAATTTAGATACA+GGG | + | chr5_3:52858456-52858475 | Msa0817500:intron | 25.0% |
| !! | GAACTTATCATTTAGAATCT+TGG | + | chr5_3:52858647-52858666 | Msa0817500:CDS | 25.0% |
| ! | ATTTGCAAGGATAAATGTAA+GGG | - | chr5_3:52858769-52858788 | None:intergenic | 25.0% |
| !! | TGCAAAAACATGATAAGTTT+TGG | - | chr5_3:52858925-52858944 | None:intergenic | 25.0% |
| ! | TTCCATATTCTTTCAACAAT+CGG | + | chr5_3:52858962-52858981 | Msa0817500:three_prime_UTR | 25.0% |
| !! | GTTTGTTATTGGGTTATCAT+GGG | - | chr5_3:52854142-52854161 | None:intergenic | 30.0% |
| !! | TGTTTGTTATTGGGTTATCA+TGG | - | chr5_3:52854143-52854162 | None:intergenic | 30.0% |
| TCATCAACAACATAAACAAG+TGG | + | chr5_3:52854198-52854217 | Msa0817500:five_prime_UTR | 30.0% | |
| CTTATGTTCTTGGATATTCA+GGG | + | chr5_3:52854622-52854641 | Msa0817500:five_prime_UTR | 30.0% | |
| ATTGCTATGCTTCATGAATT+TGG | + | chr5_3:52854729-52854748 | Msa0817500:CDS | 30.0% | |
| AAATATATCCAGCAAGATCA+CGG | - | chr5_3:52854776-52854795 | None:intergenic | 30.0% | |
| GATCTTGCTGGATATATTTA+TGG | + | chr5_3:52854777-52854796 | Msa0817500:intron | 30.0% | |
| GTGATATAATCTAGTCAAAG+GGG | - | chr5_3:52854822-52854841 | None:intergenic | 30.0% | |
| CAGTGATATAATCTAGTCAA+AGG | - | chr5_3:52854824-52854843 | None:intergenic | 30.0% | |
| TATATCACTGATGCTATGTT+TGG | + | chr5_3:52854834-52854853 | Msa0817500:intron | 30.0% | |
| TATGCCATACTATGTTTCAA+TGG | + | chr5_3:52855011-52855030 | Msa0817500:intron | 30.0% | |
| ATGCCATACTATGTTTCAAT+GGG | + | chr5_3:52855012-52855031 | Msa0817500:intron | 30.0% | |
| ATCTTTCAAACAGTCTCATA+AGG | + | chr5_3:52855035-52855054 | Msa0817500:intron | 30.0% | |
| TCTTTCAAACAGTCTCATAA+GGG | + | chr5_3:52855036-52855055 | Msa0817500:intron | 30.0% | |
| GTCATTGAAATTATAAGGGT+CGG | + | chr5_3:52855203-52855222 | Msa0817500:intron | 30.0% | |
| ! | TACGGTGTTAAATTTGGAAA+AGG | - | chr5_3:52855302-52855321 | None:intergenic | 30.0% |
| ATTGATTAGTATCCAGAATC+TGG | + | chr5_3:52855598-52855617 | Msa0817500:intron | 30.0% | |
| TTATTAGTGAAGTCACAGAA+AGG | - | chr5_3:52856025-52856044 | None:intergenic | 30.0% | |
| ATTAGTAATGAAGACAGTTG+AGG | + | chr5_3:52856128-52856147 | Msa0817500:intron | 30.0% | |
| AGGCTGTTTATGTTCTATTT+AGG | + | chr5_3:52856528-52856547 | Msa0817500:intron | 30.0% | |
| GGCTGTTTATGTTCTATTTA+GGG | + | chr5_3:52856529-52856548 | Msa0817500:intron | 30.0% | |
| TGAAAGATGAGGAATACAAA+TGG | - | chr5_3:52856618-52856637 | None:intergenic | 30.0% | |
| AAGTGTGACATTATATTCCT+TGG | - | chr5_3:52857025-52857044 | None:intergenic | 30.0% | |
| !! | ATGTCACACTTTTGTCATTT+TGG | + | chr5_3:52857034-52857053 | Msa0817500:intron | 30.0% |
| !! | GGTAAAGACAAATTTTGGAA+AGG | - | chr5_3:52857411-52857430 | None:intergenic | 30.0% |
| !! | TTGTTGTGAAGGCTATTTTA+GGG | + | chr5_3:52857431-52857450 | Msa0817500:intron | 30.0% |
| TCAATTCATTTAGAGAAGTC+AGG | - | chr5_3:52857508-52857527 | None:intergenic | 30.0% | |
| !! | AGCTTTATTATCACTATGCT+TGG | + | chr5_3:52857575-52857594 | Msa0817500:intron | 30.0% |
| ! | TTCTTCTTGGAGTTTTTGTT+TGG | + | chr5_3:52857794-52857813 | Msa0817500:intron | 30.0% |
| CTATTTGGTTGTAACCTAAT+AGG | + | chr5_3:52857853-52857872 | Msa0817500:intron | 30.0% | |
| TTCATCATGTTCTTTACAAC+TGG | - | chr5_3:52857893-52857912 | None:intergenic | 30.0% | |
| ! | CTATATTTTCAGTTTACCGT+TGG | + | chr5_3:52857917-52857936 | Msa0817500:CDS | 30.0% |
| TATTACAGCCTTTCTTCAAT+CGG | + | chr5_3:52858054-52858073 | Msa0817500:CDS | 30.0% | |
| ! | TATCGTGGATTTAAAACTGA+GGG | - | chr5_3:52858181-52858200 | None:intergenic | 30.0% |
| ! | ATATCGTGGATTTAAAACTG+AGG | - | chr5_3:52858182-52858201 | None:intergenic | 30.0% |
| !!! | CAGTTTTAAATCCACGATAT+TGG | + | chr5_3:52858182-52858201 | Msa0817500:intron | 30.0% |
| !! | TCAGACGTTTTTGAAAATTG+GGG | - | chr5_3:52858210-52858229 | None:intergenic | 30.0% |
| TCAACCTCAAAAGTTTAGAT+GGG | - | chr5_3:52858240-52858259 | None:intergenic | 30.0% | |
| ATCAACCTCAAAAGTTTAGA+TGG | - | chr5_3:52858241-52858260 | None:intergenic | 30.0% | |
| !!! | AAATGAGTTTTTTAGCGAGA+TGG | + | chr5_3:52858319-52858338 | Msa0817500:intron | 30.0% |
| !! | CTGAATTTTGATGATTTGAC+AGG | - | chr5_3:52858382-52858401 | None:intergenic | 30.0% |
| ! | TTCTCCACTTATACATTTTG+AGG | - | chr5_3:52858405-52858424 | None:intergenic | 30.0% |
| AATCGTGAATTTAGATACAG+GGG | + | chr5_3:52858457-52858476 | Msa0817500:intron | 30.0% | |
| AGTATTTGGATACCAAACAT+GGG | + | chr5_3:52858598-52858617 | Msa0817500:CDS | 30.0% | |
| ATACCAAACATGGGATTAAA+GGG | + | chr5_3:52858607-52858626 | Msa0817500:CDS | 30.0% | |
| ! | TCATTTAGAATCTTGGTAAG+AGG | + | chr5_3:52858654-52858673 | Msa0817500:CDS | 30.0% |
| TTTGCAAGGATAAATGTAAG+GGG | - | chr5_3:52858768-52858787 | None:intergenic | 30.0% | |
| GATTTGCAAGGATAAATGTA+AGG | - | chr5_3:52858770-52858789 | None:intergenic | 30.0% | |
| ! | GTTTGTTCTTATTTGTCACT+AGG | - | chr5_3:52858800-52858819 | None:intergenic | 30.0% |
| TAACATCCATTCAAAAGCTT+TGG | + | chr5_3:52858820-52858839 | Msa0817500:CDS | 30.0% | |
| ACATCGTTGTTATCAACATC+AGG | - | chr5_3:52854417-52854436 | None:intergenic | 35.0% | |
| TGTAGATTCATGGTTTCAAG+TGG | + | chr5_3:52854569-52854588 | Msa0817500:intron | 35.0% | |
| ! | GTAGATTCATGGTTTCAAGT+GGG | + | chr5_3:52854570-52854589 | Msa0817500:intron | 35.0% |
| ! | TAGATTCATGGTTTCAAGTG+GGG | + | chr5_3:52854571-52854590 | Msa0817500:intron | 35.0% |
| GCTTATGTTCTTGGATATTC+AGG | + | chr5_3:52854621-52854640 | Msa0817500:five_prime_UTR | 35.0% | |
| CTATGCTTCATGAATTTGGT+GGG | + | chr5_3:52854733-52854752 | Msa0817500:intron | 35.0% | |
| ! | ATTGTTTTCGTAAGCTATCC+TGG | + | chr5_3:52854952-52854971 | Msa0817500:intron | 35.0% |
| GATCCCATTGAAACATAGTA+TGG | - | chr5_3:52855018-52855037 | None:intergenic | 35.0% | |
| TTCTTGAATTAGGACCTGTT+TGG | - | chr5_3:52855093-52855112 | None:intergenic | 35.0% | |
| ! | TGTCTGAAACTTACAATTCG+AGG | + | chr5_3:52855490-52855509 | Msa0817500:intron | 35.0% |
| ! | GACTAACCTGCTAAGATTTT+GGG | + | chr5_3:52855954-52855973 | Msa0817500:intron | 35.0% |
| ! | GAAGTAGATAACTTGTCAAC+AGG | - | chr5_3:52856001-52856020 | None:intergenic | 35.0% |
| ! | AAACCTTTTCCCATTAGATG+AGG | - | chr5_3:52856367-52856386 | None:intergenic | 35.0% |
| TGACTGCACAAATTGAGATA+AGG | - | chr5_3:52856440-52856459 | None:intergenic | 35.0% | |
| !! | TTGTTGATTTGTTGTCATGC+AGG | + | chr5_3:52856508-52856527 | Msa0817500:intron | 35.0% |
| !! | ATCTTTCAGCTCTAGGAATT+TGG | + | chr5_3:52856630-52856649 | Msa0817500:CDS | 35.0% |
| !!! | AATTTGGCTTGGATTTTCGA+CGG | + | chr5_3:52856646-52856665 | Msa0817500:CDS | 35.0% |
| CTTGTACTGTCACTAAAAGA+TGG | + | chr5_3:52856698-52856717 | Msa0817500:CDS | 35.0% | |
| ! | ACAATTAATTACAGAGGCAC+CGG | - | chr5_3:52856836-52856855 | None:intergenic | 35.0% |
| GAAGGAAAGATGAAACTCAT+AGG | - | chr5_3:52856952-52856971 | None:intergenic | 35.0% | |
| TTCATCTTTCCTTCTATCTC+TGG | + | chr5_3:52856958-52856977 | Msa0817500:intron | 35.0% | |
| ! | TTCATTTTCTCTGCTTACCA+AGG | + | chr5_3:52857005-52857024 | Msa0817500:intron | 35.0% |
| ! | TTGTCTTTACCTTGTTGTGA+AGG | + | chr5_3:52857420-52857439 | Msa0817500:intron | 35.0% |
| CTAAAATAGCCTTCACAACA+AGG | - | chr5_3:52857432-52857451 | None:intergenic | 35.0% | |
| !! | CTTGTTGTGAAGGCTATTTT+AGG | + | chr5_3:52857430-52857449 | Msa0817500:intron | 35.0% |
| AAGCAGTAGATACTTAGACT+TGG | + | chr5_3:52857458-52857477 | Msa0817500:intron | 35.0% | |
| AGATACTTAGACTTGGCTAT+CGG | + | chr5_3:52857465-52857484 | Msa0817500:intron | 35.0% | |
| TATGCTTGGTTAATTCAGTG+TGG | + | chr5_3:52857589-52857608 | Msa0817500:intron | 35.0% | |
| ATGCTTGGTTAATTCAGTGT+GGG | + | chr5_3:52857590-52857609 | Msa0817500:intron | 35.0% | |
| !! | ATTTTACTTGTTGATGTCCC+AGG | - | chr5_3:52857684-52857703 | None:intergenic | 35.0% |
| TTGAATCATACCTGTATCTC+AGG | - | chr5_3:52857765-52857784 | None:intergenic | 35.0% | |
| TGAGATACAGGTATGATTCA+AGG | + | chr5_3:52857764-52857783 | Msa0817500:intron | 35.0% | |
| ATATAATGGCAGAACTCCAA+CGG | - | chr5_3:52857936-52857955 | None:intergenic | 35.0% | |
| GCAAAGGTAACCAGATATAA+TGG | - | chr5_3:52857950-52857969 | None:intergenic | 35.0% | |
| TTATATCTGGTTACCTTTGC+AGG | + | chr5_3:52857950-52857969 | Msa0817500:CDS | 35.0% | |
| TATATCTGGTTACCTTTGCA+GGG | + | chr5_3:52857951-52857970 | Msa0817500:CDS | 35.0% | |
| ACCAAAAATCGTGAGACAAA+GGG | - | chr5_3:52858157-52858176 | None:intergenic | 35.0% | |
| ! | ATCGTGGATTTAAAACTGAG+GGG | - | chr5_3:52858180-52858199 | None:intergenic | 35.0% |
| !! | CAGACGTTTTTGAAAATTGG+GGG | - | chr5_3:52858209-52858228 | None:intergenic | 35.0% |
| ! | TTTCCCCATCTAAACTTTTG+AGG | + | chr5_3:52858233-52858252 | Msa0817500:intron | 35.0% |
| CAACCTCAAAAGTTTAGATG+GGG | - | chr5_3:52858239-52858258 | None:intergenic | 35.0% | |
| TCAGCCTCAAAATGTATAAG+TGG | + | chr5_3:52858398-52858417 | Msa0817500:intron | 35.0% | |
| ATCGTGAATTTAGATACAGG+GGG | + | chr5_3:52858458-52858477 | Msa0817500:intron | 35.0% | |
| GTATCCAAATACTCGTACAT+CGG | - | chr5_3:52858591-52858610 | None:intergenic | 35.0% | |
| GAGTATTTGGATACCAAACA+TGG | + | chr5_3:52858597-52858616 | Msa0817500:CDS | 35.0% | |
| GATACCAAACATGGGATTAA+AGG | + | chr5_3:52858606-52858625 | Msa0817500:CDS | 35.0% | |
| ! | TTTAGAATCTTGGTAAGAGG+TGG | + | chr5_3:52858657-52858676 | Msa0817500:CDS | 35.0% |
| ! | CTAGGTACATATGATTTGCA+AGG | - | chr5_3:52858782-52858801 | None:intergenic | 35.0% |
| ! | TTTGGCATTGGATCAACATT+TGG | + | chr5_3:52858838-52858857 | Msa0817500:CDS | 35.0% |
| CTCCGATTGTTGAAAGAATA+TGG | - | chr5_3:52858967-52858986 | None:intergenic | 35.0% | |
| ! | GAACGTTTCTGTTGATGAAG+AGG | + | chr5_3:52854374-52854393 | Msa0817500:five_prime_UTR | 40.0% |
| TGGATATTCAGGGACCATTA+TGG | + | chr5_3:52854632-52854651 | Msa0817500:exon | 40.0% | |
| GCTATGCTTCATGAATTTGG+TGG | + | chr5_3:52854732-52854751 | Msa0817500:intron | 40.0% | |
| ATTAGATACCGTGATCTTGC+TGG | + | chr5_3:52854765-52854784 | Msa0817500:intron | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | - | chr5_3:52854973-52854992 | None:intergenic | 40.0% | |
| GCTCAAATCTCAATCCAAAC+AGG | + | chr5_3:52855076-52855095 | Msa0817500:intron | 40.0% | |
| !! | ATTGGCTACATCATTTTGGC+TGG | + | chr5_3:52855775-52855794 | Msa0817500:CDS | 40.0% |
| !!! | CTACATCATTTTGGCTGGTT+CGG | + | chr5_3:52855780-52855799 | Msa0817500:CDS | 40.0% |
| ! | CGACTAACCTGCTAAGATTT+TGG | + | chr5_3:52855953-52855972 | Msa0817500:intron | 40.0% |
| ACAAGACCCAAAATCTTAGC+AGG | - | chr5_3:52855963-52855982 | None:intergenic | 40.0% | |
| TTTGATCCGACCTCATCTAA+TGG | + | chr5_3:52856354-52856373 | Msa0817500:intron | 40.0% | |
| TTGATCCGACCTCATCTAAT+GGG | + | chr5_3:52856355-52856374 | Msa0817500:intron | 40.0% | |
| ! | CTTTTCCCATTAGATGAGGT+CGG | - | chr5_3:52856363-52856382 | None:intergenic | 40.0% |
| CTGCACAAATTGAGATAAGG+AGG | - | chr5_3:52856437-52856456 | None:intergenic | 40.0% | |
| CCAGCTATGGCAATAAAATG+TGG | - | chr5_3:52856575-52856594 | None:intergenic | 40.0% | |
| ! | CCACATTTTATTGCCATAGC+TGG | + | chr5_3:52856572-52856591 | Msa0817500:CDS | 40.0% |
| ATTCCTCATCTTTCAGCTCT+AGG | + | chr5_3:52856623-52856642 | Msa0817500:CDS | 40.0% | |
| ATTCCTAGAGCTGAAAGATG+AGG | - | chr5_3:52856629-52856648 | None:intergenic | 40.0% | |
| GTGCTATGACAATATATGCG+AGG | - | chr5_3:52856679-52856698 | None:intergenic | 40.0% | |
| !! | AATTAATTACAGAGGCACCG+GGG | - | chr5_3:52856834-52856853 | None:intergenic | 40.0% |
| !! | CAATTAATTACAGAGGCACC+GGG | - | chr5_3:52856835-52856854 | None:intergenic | 40.0% |
| TTGTTCAGACCAGAGATAGA+AGG | - | chr5_3:52856970-52856989 | None:intergenic | 40.0% | |
| !!! | TTGTCATTTTGGTCTTCTGC+TGG | + | chr5_3:52857045-52857064 | Msa0817500:intron | 40.0% |
| ! | TTTGGTCTTCTGCTGGTATT+TGG | + | chr5_3:52857052-52857071 | Msa0817500:intron | 40.0% |
| GATACTTAGACTTGGCTATC+GGG | + | chr5_3:52857466-52857485 | Msa0817500:intron | 40.0% | |
| ATATGCGAACACGAGATTAG+CGG | - | chr5_3:52857727-52857746 | None:intergenic | 40.0% | |
| CTCGTGTTCGCATATAATAC+AGG | + | chr5_3:52857732-52857751 | Msa0817500:CDS | 40.0% | |
| TGGAGTTCTGCCATTATATC+TGG | + | chr5_3:52857937-52857956 | Msa0817500:CDS | 40.0% | |
| ATAATGTCAAGGGTCCAATC+TGG | + | chr5_3:52858014-52858033 | Msa0817500:CDS | 40.0% | |
| TAATGTCAAGGGTCCAATCT+GGG | + | chr5_3:52858015-52858034 | Msa0817500:CDS | 40.0% | |
| TGCAATGACCGATTGAAGAA+AGG | - | chr5_3:52858065-52858084 | None:intergenic | 40.0% | |
| CAAAAATCGTGAGACAAAGG+GGG | - | chr5_3:52858155-52858174 | None:intergenic | 40.0% | |
| CCAAAAATCGTGAGACAAAG+GGG | - | chr5_3:52858156-52858175 | None:intergenic | 40.0% | |
| GACCAAAAATCGTGAGACAA+AGG | - | chr5_3:52858158-52858177 | None:intergenic | 40.0% | |
| AGATACTTACGTGACATCTG+AGG | + | chr5_3:52858285-52858304 | Msa0817500:intron | 40.0% | |
| ! | CAGTACCTCATTCACGATTT+TGG | - | chr5_3:52858485-52858504 | None:intergenic | 40.0% |
| ! | ATCTACCAGAAGCATAAGAG+AGG | - | chr5_3:52858558-52858577 | None:intergenic | 40.0% |
| AAGTCCGATGTACGAGTATT+TGG | + | chr5_3:52858584-52858603 | Msa0817500:CDS | 40.0% | |
| ACTCCCTTTAATCCCATGTT+TGG | - | chr5_3:52858613-52858632 | None:intergenic | 40.0% | |
| CTCATGAAATCTCCAAGGAA+TGG | - | chr5_3:52858720-52858739 | None:intergenic | 40.0% | |
| ! | CCAATGCCAAAGCTTTTGAA+TGG | - | chr5_3:52858829-52858848 | None:intergenic | 40.0% |
| ! | CCATTCAAAAGCTTTGGCAT+TGG | + | chr5_3:52858826-52858845 | Msa0817500:CDS | 40.0% |
| GGTTGTAGCAAAATTCACGC+TGG | + | chr5_3:52854344-52854363 | Msa0817500:five_prime_UTR | 45.0% | |
| TGTAGCAAAATTCACGCTGG+CGG | + | chr5_3:52854347-52854366 | Msa0817500:five_prime_UTR | 45.0% | |
| ! | CTGATTTGATGTGCAGTGTC+TGG | - | chr5_3:52854447-52854466 | None:intergenic | 45.0% |
| ACTGCACATCAAATCAGCAC+TGG | + | chr5_3:52854450-52854469 | Msa0817500:five_prime_UTR | 45.0% | |
| ! | AGTGGGGTTTGTGTTGACAA+CGG | + | chr5_3:52854587-52854606 | Msa0817500:five_prime_UTR | 45.0% |
| AGGGACCATTATGGTTCCTT+TGG | + | chr5_3:52854641-52854660 | Msa0817500:exon | 45.0% | |
| GGGACCATTATGGTTCCTTT+GGG | + | chr5_3:52854642-52854661 | Msa0817500:exon | 45.0% | |
| CCAACCCAAAGGAACCATAA+TGG | - | chr5_3:52854649-52854668 | None:intergenic | 45.0% | |
| CCATTATGGTTCCTTTGGGT+TGG | + | chr5_3:52854646-52854665 | Msa0817500:exon | 45.0% | |
| !! | ATGGTTCCTTTGGGTTGGAT+AGG | + | chr5_3:52854651-52854670 | Msa0817500:CDS | 45.0% |
| AAGCTATCCTGGAGAGCTTA+TGG | + | chr5_3:52854963-52854982 | Msa0817500:intron | 45.0% | |
| TCACACATGCATCCAGATTC+TGG | - | chr5_3:52855613-52855632 | None:intergenic | 45.0% | |
| ! | GAAAAGCATATTGCCTCACG+TGG | + | chr5_3:52855719-52855738 | Msa0817500:CDS | 45.0% |
| CGACCTCATCTAATGGGAAA+AGG | + | chr5_3:52856361-52856380 | Msa0817500:intron | 45.0% | |
| !! | TCAGCTCTAGGAATTTGGCT+TGG | + | chr5_3:52856635-52856654 | Msa0817500:CDS | 45.0% |
| !! | ATGCTTGGTTTTCTGTTCCC+CGG | + | chr5_3:52856814-52856833 | Msa0817500:intron | 45.0% |
| CGCGAGATTATAGTGTTCCT+GGG | + | chr5_3:52857664-52857683 | Msa0817500:CDS | 45.0% | |
| AGGAATGCTTCCTGAGATAC+AGG | + | chr5_3:52857752-52857771 | Msa0817500:CDS | 45.0% | |
| TTGTCTGATCGTCGCCTATT+AGG | - | chr5_3:52857870-52857889 | None:intergenic | 45.0% | |
| TCCAATCTGGGTGAAAGTTG+TGG | + | chr5_3:52858027-52858046 | Msa0817500:CDS | 45.0% | |
| ! | CCCCTTTGTCTCACGATTTT+TGG | + | chr5_3:52858153-52858172 | Msa0817500:intron | 45.0% |
| AAATTGGGGGACCAATATCG+TGG | - | chr5_3:52858196-52858215 | None:intergenic | 45.0% | |
| ! | TTACGTGACATCTGAGGTGA+TGG | + | chr5_3:52858291-52858310 | Msa0817500:intron | 45.0% |
| TTGACAGGTGAAAGCTTGCA+TGG | - | chr5_3:52858367-52858386 | None:intergenic | 45.0% | |
| GATAGCCTCTCTTATGCTTC+TGG | + | chr5_3:52858550-52858569 | Msa0817500:intron | 45.0% | |
| TGAGGCTCATGAAATCTCCA+AGG | - | chr5_3:52858725-52858744 | None:intergenic | 45.0% | |
| TGGAGATTTCATGAGCCTCA+CGG | + | chr5_3:52858725-52858744 | Msa0817500:CDS | 45.0% | |
| ! | GTGGGGTTTGTGTTGACAAC+GGG | + | chr5_3:52854588-52854607 | Msa0817500:five_prime_UTR | 50.0% |
| !! | GTTCCTTTGGGTTGGATAGG+TGG | + | chr5_3:52854654-52854673 | Msa0817500:CDS | 50.0% |
| ACACCACCTATCCAACCCAA+AGG | - | chr5_3:52854660-52854679 | None:intergenic | 50.0% | |
| !! | GGTTGGATAGGTGGTGTTGT+TGG | + | chr5_3:52854663-52854682 | Msa0817500:CDS | 50.0% |
| !! | TTTGGCTGGTTCGGCTTTGA+AGG | + | chr5_3:52855789-52855808 | Msa0817500:CDS | 50.0% |
| TGCACACACAAGTCCAGCTA+TGG | - | chr5_3:52856588-52856607 | None:intergenic | 50.0% | |
| GGAACACTATAATCTCGCGC+TGG | - | chr5_3:52857663-52857682 | None:intergenic | 50.0% | |
| GCGCGAGATTATAGTGTTCC+TGG | + | chr5_3:52857663-52857682 | Msa0817500:CDS | 50.0% | |
| TGGTTACCTTTGCAGGGTAC+TGG | + | chr5_3:52857957-52857976 | Msa0817500:CDS | 50.0% | |
| ! | GGTTACCTTTGCAGGGTACT+GGG | + | chr5_3:52857958-52857977 | Msa0817500:CDS | 50.0% |
| ATAAGCCCAGTACCCTGCAA+AGG | - | chr5_3:52857966-52857985 | None:intergenic | 50.0% | |
| !! | TTTGCAGGGTACTGGGCTTA+TGG | + | chr5_3:52857965-52857984 | Msa0817500:CDS | 50.0% |
| GCCACAACTTTCACCCAGAT+TGG | - | chr5_3:52858031-52858050 | None:intergenic | 50.0% | |
| !! | TGGCAACAGAGTTGATGACG+TGG | - | chr5_3:52858347-52858366 | None:intergenic | 50.0% |
| GGGGACCAAAATCGTGAATG+AGG | + | chr5_3:52858477-52858496 | Msa0817500:intron | 50.0% | |
| TCAGCTCTACTGCCATTCCT+TGG | + | chr5_3:52858705-52858724 | Msa0817500:CDS | 50.0% | |
| GGAGATTTCATGAGCCTCAC+GGG | + | chr5_3:52858726-52858745 | Msa0817500:CDS | 50.0% | |
| ATGTGCTTATAGCTCCCGTG+AGG | - | chr5_3:52858743-52858762 | None:intergenic | 50.0% | |
| AGTTGCGGCAACAGACATGA+TGG | - | chr5_3:52858871-52858890 | None:intergenic | 50.0% | |
| CATACTGCAGAGTCCACGTG+AGG | - | chr5_3:52855735-52855754 | None:intergenic | 55.0% | |
| CCGCAGCGCTGCAATAGTTG+CGG | - | chr5_3:52858886-52858905 | None:intergenic | 60.0% | |
| CCGCAACTATTGCAGCGCTG+CGG | + | chr5_3:52858883-52858902 | Msa0817500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 52854135 | 52859002 | 52854135 | ID=Msa0817500;Name=Msa0817500 |
| chr5_3 | mRNA | 52854135 | 52859002 | 52854135 | ID=Msa0817500-mRNA-1;Parent=Msa0817500;Name=Msa0817500-mRNA-1;_AED=0.10;_eAED=0.10;_QI=414|0.66|0.71|1|1|1|7|49|362 |
| chr5_3 | exon | 52854135 | 52854471 | 52854135 | ID=Msa0817500-mRNA-1:exon:15887;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52854574 | 52854750 | 52854574 | ID=Msa0817500-mRNA-1:exon:15888;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52855716 | 52855810 | 52855716 | ID=Msa0817500-mRNA-1:exon:15889;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52856530 | 52856719 | 52856530 | ID=Msa0817500-mRNA-1:exon:15890;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52857649 | 52857773 | 52857649 | ID=Msa0817500-mRNA-1:exon:15891;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52857875 | 52858075 | 52857875 | ID=Msa0817500-mRNA-1:exon:15892;Parent=Msa0817500-mRNA-1 |
| chr5_3 | exon | 52858576 | 52859002 | 52858576 | ID=Msa0817500-mRNA-1:exon:15893;Parent=Msa0817500-mRNA-1 |
| chr5_3 | five_prime_UTR | 52854135 | 52854471 | 52854135 | ID=Msa0817500-mRNA-1:five_prime_utr;Parent=Msa0817500-mRNA-1 |
| chr5_3 | five_prime_UTR | 52854574 | 52854650 | 52854574 | ID=Msa0817500-mRNA-1:five_prime_utr;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52854651 | 52854750 | 52854651 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52855716 | 52855810 | 52855716 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52856530 | 52856719 | 52856530 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52857649 | 52857773 | 52857649 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52857875 | 52858075 | 52857875 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | CDS | 52858576 | 52858953 | 52858576 | ID=Msa0817500-mRNA-1:cds;Parent=Msa0817500-mRNA-1 |
| chr5_3 | three_prime_UTR | 52858954 | 52859002 | 52858954 | ID=Msa0817500-mRNA-1:three_prime_utr;Parent=Msa0817500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
