Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789110 | sp|Q94C48|WDL5_ARATH | 47.703 | 283 | 137 | 7 | 83 | 360 | 70 | 346 | 1.97e-66 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789110 | I3SYX8 | 88.387 | 465 | 39 | 3 | 1 | 463 | 1 | 452 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432690 | Msa0789110 | 0.811760 | 5.957807e-51 | -8.615850e-47 |
| Msa0521320 | Msa0789110 | 0.820697 | 5.979956e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789110 | MtrunA17_Chr3g0137761 | 88.627 | 466 | 37 | 3 | 1 | 463 | 1 | 453 | 0.0 | 804 |
| Msa0789110 | MtrunA17_Chr1g0149361 | 50.526 | 475 | 200 | 11 | 1 | 461 | 2 | 455 | 2.20e-131 | 387 |
| Msa0789110 | MtrunA17_Chr1g0176611 | 44.554 | 202 | 84 | 4 | 220 | 417 | 233 | 410 | 1.67e-38 | 145 |
| Msa0789110 | MtrunA17_Chr7g0267791 | 41.743 | 218 | 100 | 6 | 104 | 312 | 130 | 329 | 3.54e-36 | 138 |
| Msa0789110 | MtrunA17_Chr1g0187121 | 60.870 | 92 | 36 | 0 | 222 | 313 | 217 | 308 | 9.11e-29 | 117 |
| Msa0789110 | MtrunA17_Chr1g0190551 | 43.697 | 119 | 63 | 1 | 214 | 332 | 191 | 305 | 2.62e-21 | 95.1 |
| Msa0789110 | MtrunA17_Chr7g0274281 | 56.566 | 99 | 39 | 1 | 213 | 311 | 207 | 301 | 6.32e-21 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789110 | AT4G32330.2 | 47.518 | 282 | 138 | 6 | 83 | 360 | 70 | 345 | 1.10e-68 | 226 |
| Msa0789110 | AT4G32330.1 | 47.703 | 283 | 137 | 7 | 83 | 360 | 70 | 346 | 2.00e-67 | 222 |
| Msa0789110 | AT4G32330.4 | 47.703 | 283 | 137 | 7 | 83 | 360 | 70 | 346 | 2.00e-67 | 222 |
| Msa0789110 | AT4G32330.3 | 47.703 | 283 | 137 | 7 | 83 | 360 | 70 | 346 | 2.00e-67 | 222 |
| Msa0789110 | AT2G25480.1 | 45.679 | 243 | 128 | 3 | 135 | 376 | 99 | 338 | 7.70e-58 | 196 |
| Msa0789110 | AT2G25480.2 | 45.679 | 243 | 129 | 3 | 135 | 376 | 99 | 339 | 1.27e-57 | 196 |
| Msa0789110 | AT2G35880.3 | 72.816 | 103 | 27 | 1 | 211 | 313 | 236 | 337 | 8.67e-42 | 154 |
| Msa0789110 | AT2G35880.2 | 72.816 | 103 | 27 | 1 | 211 | 313 | 236 | 337 | 8.67e-42 | 154 |
| Msa0789110 | AT2G35880.1 | 72.816 | 103 | 27 | 1 | 211 | 313 | 236 | 337 | 8.67e-42 | 154 |
| Msa0789110 | AT3G23090.5 | 54.902 | 102 | 46 | 0 | 208 | 309 | 182 | 283 | 2.55e-25 | 106 |
| Msa0789110 | AT3G23090.1 | 54.902 | 102 | 46 | 0 | 208 | 309 | 181 | 282 | 2.94e-25 | 106 |
| Msa0789110 | AT3G23090.4 | 54.902 | 102 | 46 | 0 | 208 | 309 | 217 | 318 | 5.46e-25 | 106 |
| Msa0789110 | AT3G23090.2 | 52.830 | 106 | 46 | 1 | 208 | 309 | 181 | 286 | 2.09e-24 | 104 |
| Msa0789110 | AT3G23090.3 | 52.830 | 106 | 46 | 1 | 208 | 309 | 217 | 322 | 3.75e-24 | 103 |
| Msa0789110 | AT3G04630.3 | 52.747 | 91 | 41 | 1 | 218 | 306 | 126 | 216 | 1.31e-22 | 98.2 |
| Msa0789110 | AT3G04630.1 | 52.747 | 91 | 41 | 1 | 218 | 306 | 122 | 212 | 1.39e-22 | 97.8 |
| Msa0789110 | AT3G04630.2 | 52.747 | 91 | 41 | 1 | 218 | 306 | 121 | 211 | 1.44e-22 | 97.8 |
| Msa0789110 | AT1G70950.1 | 69.841 | 63 | 19 | 0 | 221 | 283 | 328 | 390 | 2.07e-22 | 100 |
| Msa0789110 | AT5G28646.2 | 50.980 | 102 | 44 | 2 | 214 | 313 | 84 | 181 | 3.40e-22 | 94.7 |
| Msa0789110 | AT5G28646.1 | 50.980 | 102 | 44 | 2 | 214 | 313 | 84 | 181 | 3.40e-22 | 94.7 |
| Msa0789110 | AT5G28646.3 | 50.980 | 102 | 44 | 2 | 214 | 313 | 80 | 177 | 3.45e-22 | 94.4 |
| Msa0789110 | AT1G54460.1 | 47.863 | 117 | 56 | 2 | 198 | 313 | 145 | 257 | 8.36e-22 | 96.7 |
Find 145 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACATTCTCAAGAATTT+TGG | 0.132556 | 5_2:+76850922 | None:intergenic |
| GATCTTCTTTGTGGTTTCTT+TGG | 0.168066 | 5_2:+76851570 | None:intergenic |
| GTATGCAACACTTATCTATT+TGG | 0.185118 | 5_2:-76850956 | Msa0789110:three_prime_UTR |
| TTGGATGAACTGATCCTTTC+AGG | 0.194545 | 5_2:+76851528 | None:intergenic |
| AGACAAACCACAACTCATTT+TGG | 0.224152 | 5_2:-76851274 | Msa0789110:CDS |
| TGTGGTTTCTTTGGCTGAAC+AGG | 0.226403 | 5_2:+76851579 | None:intergenic |
| CCAAAATTCTTGAGAATGTT+TGG | 0.258230 | 5_2:-76850922 | Msa0789110:three_prime_UTR |
| GCCTCTTAATCTCAGCTTCC+TGG | 0.282090 | 5_2:+76853126 | None:intergenic |
| AAACAACAGTTTGAATCTTT+CGG | 0.312704 | 5_2:-76855247 | Msa0789110:five_prime_UTR |
| GAACCCCTTGATAATCTTCC+AGG | 0.318461 | 5_2:-76854011 | Msa0789110:CDS |
| TGTTTACTCCCAAAGCTTGC+TGG | 0.322251 | 5_2:-76851062 | Msa0789110:three_prime_UTR |
| ATGGAAGAACAAGGATTAAA+TGG | 0.328736 | 5_2:-76854721 | Msa0789110:CDS |
| GAAGTCATATGAAGACTTCT+AGG | 0.332240 | 5_2:+76854490 | None:intergenic |
| ACCAGGAGCCTACTCCTTCT+AGG | 0.337669 | 5_2:-76853058 | Msa0789110:CDS |
| GAACAAACACTACACCAAAA+TGG | 0.342296 | 5_2:-76854865 | Msa0789110:CDS |
| GTTGGGACAATGCCAACTTA+TGG | 0.342732 | 5_2:-76853453 | Msa0789110:CDS |
| TATCAATGATAATTTGTCTA+TGG | 0.352840 | 5_2:-76854740 | Msa0789110:CDS |
| ACAATTAAATTTCAACTTCA+AGG | 0.366985 | 5_2:-76855449 | Msa0789110:five_prime_UTR |
| AGTTGAAATCGTTGATGAAA+TGG | 0.373626 | 5_2:-76854569 | Msa0789110:CDS |
| TGCTTAATGCTATCCTGCTA+TGG | 0.379385 | 5_2:+76851242 | None:intergenic |
| AAACAAACTGTACTGTCTAA+TGG | 0.379734 | 5_2:-76854766 | Msa0789110:CDS |
| CTCGACAGCCGGTTAAGAAC+AGG | 0.385189 | 5_2:-76854381 | Msa0789110:CDS |
| TTGACTGCCCTGTTCTTAAC+CGG | 0.385934 | 5_2:+76854373 | None:intergenic |
| CTTTCTCATCAAGACTTAAA+CGG | 0.397130 | 5_2:+76851634 | None:intergenic |
| TTCTTCAACTCCACCCTAGA+AGG | 0.399718 | 5_2:+76853044 | None:intergenic |
| TTCTACGGGGTGGGTGATGA+TGG | 0.400848 | 5_2:+76855523 | None:intergenic |
| TAAGTGTTGCATACCTCAAC+TGG | 0.402665 | 5_2:+76850965 | None:intergenic |
| TGACTCTGTGCGACTATTAG+TGG | 0.404402 | 5_2:-76855494 | Msa0789110:five_prime_UTR |
| CAAACAGCAGGAACATAATC+TGG | 0.410923 | 5_2:-76851221 | Msa0789110:three_prime_UTR |
| AGTCCGTGCAGTTGCTGAAT+TGG | 0.411034 | 5_2:+76851509 | None:intergenic |
| AATTGAGATTCTGCTACATC+TGG | 0.413515 | 5_2:+76851318 | None:intergenic |
| GTTGTTGATGAACACCATTT+TGG | 0.414950 | 5_2:+76854851 | None:intergenic |
| TGAAGCAGCTGCAGCTATTG+AGG | 0.421562 | 5_2:-76851394 | Msa0789110:CDS |
| GCTTAATGCTATCCTGCTAT+GGG | 0.424527 | 5_2:+76851243 | None:intergenic |
| AAGCTGAGATTAAGAGGCTT+AGG | 0.426472 | 5_2:-76853121 | Msa0789110:CDS |
| AACTGCACGGACTTCATCTA+AGG | 0.429060 | 5_2:-76851499 | Msa0789110:CDS |
| TTGAATCTTTCGGATCTTGT+TGG | 0.433270 | 5_2:-76855237 | Msa0789110:five_prime_UTR |
| TAATAATATAAATATTTGTC+AGG | 0.436033 | 5_2:-76850993 | Msa0789110:three_prime_UTR |
| GGAGGGAGAGATCTTCTTTG+TGG | 0.439601 | 5_2:+76851561 | None:intergenic |
| AGTAGAGTACAGGAGAAAAC+GGG | 0.441163 | 5_2:+76855411 | None:intergenic |
| ACAACTGTTTAATTCAGAAC+AGG | 0.442289 | 5_2:-76854830 | Msa0789110:CDS |
| TGTCCCAACTCTACGAGGTT+TGG | 0.442849 | 5_2:+76853467 | None:intergenic |
| GAGTAGAGTACAGGAGAAAA+CGG | 0.448444 | 5_2:+76855410 | None:intergenic |
| TTTCTCTTCCCTTGTTGCAA+TGG | 0.452310 | 5_2:+76851419 | None:intergenic |
| TTGATGAAATGGAGAAATCT+AGG | 0.454744 | 5_2:-76854558 | Msa0789110:CDS |
| ACAGAGTCACATTCTTTCTA+CGG | 0.458377 | 5_2:+76855508 | None:intergenic |
| AGTTGTTACACTAGATAAAG+AGG | 0.461330 | 5_2:+76851458 | None:intergenic |
| AGGATTAAATGGCAAAATAG+AGG | 0.462425 | 5_2:-76854710 | Msa0789110:CDS |
| GTAGCATCTTCTGTTTCAAA+TGG | 0.464133 | 5_2:-76854427 | Msa0789110:CDS |
| GAAAGCGACATGATCTGATC+TGG | 0.464989 | 5_2:-76855472 | Msa0789110:five_prime_UTR |
| GCCAGGAAGCTGAGATTAAG+AGG | 0.465254 | 5_2:-76853127 | Msa0789110:CDS |
| ATTTCAACTTCAAGGAAAGA+AGG | 0.469962 | 5_2:-76855441 | Msa0789110:five_prime_UTR |
| AACAGGGCTAATTCCTTTAG+TGG | 0.473778 | 5_2:+76851596 | None:intergenic |
| TTCTAGGGTGGAGTTGAAGA+AGG | 0.474020 | 5_2:-76853042 | Msa0789110:intron |
| AGAAAGAACAAAGGCGGAAA+AGG | 0.475013 | 5_2:-76854463 | Msa0789110:CDS |
| CTGAGATTATTTGACAATGA+AGG | 0.476122 | 5_2:-76851145 | Msa0789110:three_prime_UTR |
| ACTCTTCTTACGACCAAGCT+TGG | 0.479893 | 5_2:+76851710 | None:intergenic |
| GGATTCAGTTAACACTTCAC+TGG | 0.481211 | 5_2:-76854902 | Msa0789110:CDS |
| TTCGGATCTTGTTGGTCGGT+CGG | 0.482880 | 5_2:-76855229 | Msa0789110:five_prime_UTR |
| CTCTTCTTACGACCAAGCTT+GGG | 0.483203 | 5_2:+76851711 | None:intergenic |
| CAGAGTCACATTCTTTCTAC+GGG | 0.484596 | 5_2:+76855509 | None:intergenic |
| ACATGTGGATATGTTGCTAT+AGG | 0.488864 | 5_2:+76850721 | None:intergenic |
| ATGCCAAACCTCGTAGAGTT+GGG | 0.490023 | 5_2:-76853470 | Msa0789110:CDS |
| ACAGGGCTAATTCCTTTAGT+GGG | 0.491541 | 5_2:+76851597 | None:intergenic |
| TTCCCTTGTTGCAATGGACA+AGG | 0.498349 | 5_2:+76851425 | None:intergenic |
| CCAGGAGCCTACTCCTTCTA+GGG | 0.502058 | 5_2:-76853057 | Msa0789110:CDS |
| GGTTTGGCATCTTCTGATGT+AGG | 0.503553 | 5_2:+76853483 | None:intergenic |
| TTGAAACTGAATCCATAAGT+TGG | 0.507092 | 5_2:+76853441 | None:intergenic |
| GCATTGCTCTGTTAAACAGT+TGG | 0.507693 | 5_2:-76850870 | Msa0789110:three_prime_UTR |
| ATCTTTCGGATCTTGTTGGT+CGG | 0.507989 | 5_2:-76855233 | Msa0789110:five_prime_UTR |
| TTGTCAGGTTGTTCCAGTTG+AGG | 0.512174 | 5_2:-76850978 | Msa0789110:three_prime_UTR |
| GTGGTTTCTTTGGCTGAACA+GGG | 0.512858 | 5_2:+76851580 | None:intergenic |
| GATGCCAAACCTCGTAGAGT+TGG | 0.513113 | 5_2:-76853471 | Msa0789110:CDS |
| GTCACATTCTTTCTACGGGG+TGG | 0.514269 | 5_2:+76855513 | None:intergenic |
| TCCTGGTAGAAGCTTGGCAT+TGG | 0.514744 | 5_2:+76853074 | None:intergenic |
| ATATGAAGACTTCTAGGACT+TGG | 0.516716 | 5_2:+76854496 | None:intergenic |
| TCTCAGAATAACCCCACTAA+AGG | 0.516819 | 5_2:-76851609 | Msa0789110:CDS |
| TCCAATGCCAAGCTTCTACC+AGG | 0.517321 | 5_2:-76853075 | Msa0789110:CDS |
| CCCTAGAAGGAGTAGGCTCC+TGG | 0.521015 | 5_2:+76853057 | None:intergenic |
| AAGGATTCATGCGAAGGAAG+TGG | 0.521232 | 5_2:-76853272 | Msa0789110:CDS |
| AAAACATAATGCAAATATGC+AGG | 0.523599 | 5_2:+76851122 | None:intergenic |
| TACTTATTTGATTGCCTGTG+TGG | 0.527236 | 5_2:+76850697 | None:intergenic |
| ATAGATACATACATAACCTC+AGG | 0.534232 | 5_2:-76855153 | Msa0789110:intron |
| AGACTCTCATCCTCGACAGC+CGG | 0.534706 | 5_2:-76854392 | Msa0789110:CDS |
| AATGCCTAAACAAAATGTAA+TGG | 0.535556 | 5_2:+76850888 | None:intergenic |
| ACAAAAGATACAATGCTGCT+TGG | 0.538614 | 5_2:+76851084 | None:intergenic |
| TTGGTACAAGAACCCATAGC+AGG | 0.540838 | 5_2:-76851255 | Msa0789110:CDS |
| CAGCAGCAGCAGCAACATAG+TGG | 0.541603 | 5_2:+76855190 | None:intergenic |
| CACCTTGTCCATTGCAACAA+GGG | 0.541747 | 5_2:-76851427 | Msa0789110:CDS |
| TAAATTAGCTGTTTGTGTTG+TGG | 0.542238 | 5_2:-76850836 | Msa0789110:three_prime_UTR |
| TCTGGCTCTATGTTCTGAGA+TGG | 0.545911 | 5_2:+76851336 | None:intergenic |
| CTGCAAGGAGGAGAATCATA+AGG | 0.546424 | 5_2:+76851032 | None:intergenic |
| GTAGCAGAATCTCAATTGAA+TGG | 0.549239 | 5_2:-76851312 | Msa0789110:CDS |
| CTGTTCTTAACCGGCTGTCG+AGG | 0.550219 | 5_2:+76854382 | None:intergenic |
| TCACATTCTTTCTACGGGGT+GGG | 0.552731 | 5_2:+76855514 | None:intergenic |
| GCGAGCTGAGAGAAGAAAAG+AGG | 0.553578 | 5_2:-76853409 | Msa0789110:intron |
| AGAGCAAAATCTCCCAAGCT+TGG | 0.555915 | 5_2:-76851723 | Msa0789110:CDS |
| GTAGGCTCCTGGTAGAAGCT+TGG | 0.558222 | 5_2:+76853068 | None:intergenic |
| AGAAGAAACTTAACAGTGAG+AGG | 0.562542 | 5_2:+76855349 | None:intergenic |
| TCTTGTACCAAAATGAGTTG+TGG | 0.564689 | 5_2:+76851267 | None:intergenic |
| AACACTTCACTGGAAGATGA+TGG | 0.565636 | 5_2:-76854892 | Msa0789110:CDS |
| CCACCTTGTCCATTGCAACA+AGG | 0.567508 | 5_2:-76851428 | Msa0789110:CDS |
| GATAGCATTAAGCAAACAGC+AGG | 0.572590 | 5_2:-76851233 | Msa0789110:exon |
| CAACTTCAAGGAAAGAAGGA+AGG | 0.573030 | 5_2:-76855437 | Msa0789110:five_prime_UTR |
| ATGTATGTATCTATGAAAAG+AGG | 0.576032 | 5_2:+76855162 | None:intergenic |
| CAAGCTGACTCGACTGTCCA+AGG | 0.578035 | 5_2:-76854347 | Msa0789110:intron |
| TTGAGAATGTTTGGCATCAG+CGG | 0.578959 | 5_2:-76850913 | Msa0789110:three_prime_UTR |
| GGTTCTTTCTTTATTAAGCG+TGG | 0.580191 | 5_2:+76854029 | None:intergenic |
| GGATTAAATGGCAAAATAGA+GGG | 0.583012 | 5_2:-76854709 | Msa0789110:CDS |
| TTTACTCTAAGCTTGAGGAA+AGG | 0.592432 | 5_2:-76853291 | Msa0789110:CDS |
| CTCCTCGACTGACTCCTGAA+AGG | 0.594114 | 5_2:-76851542 | Msa0789110:CDS |
| TGTAATACGACTAATCAGAA+TGG | 0.595287 | 5_2:+76850810 | None:intergenic |
| AGTACAGTAGAGTAGAGTAC+AGG | 0.597123 | 5_2:+76855401 | None:intergenic |
| TAGAAGTCTTCATATGACTT+CGG | 0.599550 | 5_2:-76854488 | Msa0789110:CDS |
| TGAGGAAAGGATTCATGCGA+AGG | 0.601101 | 5_2:-76853278 | Msa0789110:CDS |
| CGGAAAAGGTGAAGAGGCTG+CGG | 0.604522 | 5_2:-76854449 | Msa0789110:CDS |
| CTTTCAGGAGTCAGTCGAGG+AGG | 0.604733 | 5_2:+76851543 | None:intergenic |
| TTTCAGGAGTCAGTCGAGGA+GGG | 0.609189 | 5_2:+76851544 | None:intergenic |
| CAAAGGCGGAAAAGGTGAAG+AGG | 0.609738 | 5_2:-76854455 | Msa0789110:CDS |
| TGCAGCGTTGGTGTAAACGA+TGG | 0.614185 | 5_2:-76854923 | Msa0789110:intron |
| TCGAGGATGAGAGTCTAAAG+TGG | 0.615745 | 5_2:+76854399 | None:intergenic |
| CAGGGCTAATTCCTTTAGTG+GGG | 0.617483 | 5_2:+76851598 | None:intergenic |
| TCGACAGCCGGTTAAGAACA+GGG | 0.621749 | 5_2:-76854380 | Msa0789110:CDS |
| GATTCATGCGAAGGAAGTGG+AGG | 0.623695 | 5_2:-76853269 | Msa0789110:CDS |
| AACTCCACCCTAGAAGGAGT+AGG | 0.629124 | 5_2:+76853050 | None:intergenic |
| GATTGCCTGTGTGGAACATG+TGG | 0.635575 | 5_2:+76850706 | None:intergenic |
| CATCCAATTCAGCAACTGCA+CGG | 0.641669 | 5_2:-76851512 | Msa0789110:CDS |
| GCCTTGTCTGATGAGACAAG+TGG | 0.643159 | 5_2:-76851363 | Msa0789110:CDS |
| TATTACATATAATTGCTGCA+AGG | 0.643725 | 5_2:+76851017 | None:intergenic |
| ATCCTTTCAGGAGTCAGTCG+AGG | 0.644922 | 5_2:+76851540 | None:intergenic |
| TCCACTTGTCTCATCAGACA+AGG | 0.648448 | 5_2:+76851362 | None:intergenic |
| GGAGCCTACTCCTTCTAGGG+TGG | 0.650646 | 5_2:-76853054 | Msa0789110:CDS |
| TACATATAATTGCTGCAAGG+AGG | 0.654039 | 5_2:+76851020 | None:intergenic |
| GGCATTGTCCCAACTCTACG+AGG | 0.655109 | 5_2:+76853462 | None:intergenic |
| CTGTTTAATTCAGAACAGGA+TGG | 0.660275 | 5_2:-76854826 | Msa0789110:CDS |
| ATGTTGCTATAGGATACAGT+AGG | 0.662414 | 5_2:+76850731 | None:intergenic |
| CCTTGTTGCAATGGACAAGG+TGG | 0.666267 | 5_2:+76851428 | None:intergenic |
| TGCACGGACTTCATCTAAGG+CGG | 0.675302 | 5_2:-76851496 | Msa0789110:CDS |
| TTTCCTGGAAGATTATCAAG+GGG | 0.677776 | 5_2:+76854008 | None:intergenic |
| CATATCCACATGTTCCACAC+AGG | 0.693283 | 5_2:-76850711 | Msa0789110:three_prime_UTR |
| TCGGTGAGAAAGAACAAAGG+CGG | 0.698882 | 5_2:-76854469 | Msa0789110:CDS |
| GTAGAGTACAGGAGAAAACG+GGG | 0.716200 | 5_2:+76855412 | None:intergenic |
| AATTTGTCTATGGAAGAACA+AGG | 0.717987 | 5_2:-76854730 | Msa0789110:CDS |
| ACTTCGGTGAGAAAGAACAA+AGG | 0.739576 | 5_2:-76854472 | Msa0789110:CDS |
| AGAGTCACATTCTTTCTACG+GGG | 0.765002 | 5_2:+76855510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAATAAAAAATCAG+GGG | + | chr5_2:76850912-76850931 | None:intergenic | 10.0% |
| !!! | ATGTATTTTGAAATTATTAT+AGG | - | chr5_2:76851606-76851625 | Msa0789110:CDS | 10.0% |
| !! | AGAATAAAAACAATAAAAAA+AGG | + | chr5_2:76852242-76852261 | None:intergenic | 10.0% |
| !! | TAATAATATAAATATTTGTC+AGG | - | chr5_2:76855212-76855231 | Msa0789110:five_prime_UTR | 10.0% |
| !! | TAATAATTTCAAAATACATG+AGG | + | chr5_2:76851605-76851624 | None:intergenic | 15.0% |
| !!! | AATTTTTAAAATTAGAGAGA+AGG | - | chr5_2:76852581-76852600 | Msa0789110:intron | 15.0% |
| !!! | ATTTTTAAAATTAGAGAGAA+GGG | - | chr5_2:76852582-76852601 | Msa0789110:intron | 15.0% |
| !!! | TGTAAATTAGTTTACAATTA+TGG | - | chr5_2:76852667-76852686 | Msa0789110:intron | 15.0% |
| !! | AGATCAATAATATAATATGA+GGG | + | chr5_2:76854250-76854269 | None:intergenic | 15.0% |
| !! | AAGATCAATAATATAATATG+AGG | + | chr5_2:76854251-76854270 | None:intergenic | 15.0% |
| !! | AAAACAAAAACAAAAAAACT+TGG | + | chr5_2:76854319-76854338 | None:intergenic | 15.0% |
| !! | ACAATTAAATTTCAACTTCA+AGG | - | chr5_2:76850756-76850775 | Msa0789110:three_prime_UTR | 20.0% |
| !! | TCAAAATCAAAATCAAATCA+GGG | + | chr5_2:76851199-76851218 | None:intergenic | 20.0% |
| !! | ATCAAAATCAAAATCAAATC+AGG | + | chr5_2:76851200-76851219 | None:intergenic | 20.0% |
| !!! | TATCAATGATAATTTGTCTA+TGG | - | chr5_2:76851465-76851484 | Msa0789110:CDS | 20.0% |
| !!! | AAACAATGTTAATGTTTTCA+AGG | - | chr5_2:76851519-76851538 | Msa0789110:CDS | 20.0% |
| !!! | TTTGAAATTATTATAGGATG+AGG | - | chr5_2:76851612-76851631 | Msa0789110:CDS | 20.0% |
| !!! | AGTTTCTTCTTTAATCTTTT+TGG | - | chr5_2:76851946-76851965 | Msa0789110:intron | 20.0% |
| !! | TGTAATGAAAATTATAGTGT+TGG | - | chr5_2:76851972-76851991 | Msa0789110:intron | 20.0% |
| !! | ATATCACAATAGTAAGTTTA+TGG | - | chr5_2:76852302-76852321 | Msa0789110:intron | 20.0% |
| !! | TATCACAATAGTAAGTTTAT+GGG | - | chr5_2:76852303-76852322 | Msa0789110:intron | 20.0% |
| !! | AATTTGAACAAACATTGTTA+GGG | + | chr5_2:76852514-76852533 | None:intergenic | 20.0% |
| !! | TAATTTGAACAAACATTGTT+AGG | + | chr5_2:76852515-76852534 | None:intergenic | 20.0% |
| !! | AGTTTACAATTATGGTTTAA+TGG | - | chr5_2:76852675-76852694 | Msa0789110:intron | 20.0% |
| !!! | GTCTAAAAAAGTTCATATTT+TGG | - | chr5_2:76852883-76852902 | Msa0789110:intron | 20.0% |
| !!! | TAAAAAAGTTCATATTTTGG+TGG | - | chr5_2:76852886-76852905 | Msa0789110:intron | 20.0% |
| !! | ATATATTATGATTATCACCT+TGG | + | chr5_2:76852983-76853002 | None:intergenic | 20.0% |
| !! | AATCATAATATATGATAGCT+AGG | - | chr5_2:76852990-76853009 | Msa0789110:intron | 20.0% |
| !! | TTCCTATAAAAAGAAATCAA+AGG | + | chr5_2:76853057-76853076 | None:intergenic | 20.0% |
| !!! | GTAATCTGTCTAATTATTTT+CGG | - | chr5_2:76853251-76853270 | Msa0789110:CDS | 20.0% |
| !!! | TTTTCGGTTTTTTTAACTAT+AGG | - | chr5_2:76853267-76853286 | Msa0789110:CDS | 20.0% |
| !! | AACTATGATTTCAATTTGAA+TGG | - | chr5_2:76853622-76853641 | Msa0789110:intron | 20.0% |
| !! | AAAACACAAACCAAATTTAA+AGG | + | chr5_2:76853740-76853759 | None:intergenic | 20.0% |
| !!! | TATCTGATTCTAAAAATGAA+TGG | - | chr5_2:76853832-76853851 | Msa0789110:intron | 20.0% |
| !!! | TTAGATTTCAAAATTTGTTC+AGG | + | chr5_2:76854189-76854208 | None:intergenic | 20.0% |
| ! | AAACAACAGTTTGAATCTTT+CGG | - | chr5_2:76850958-76850977 | Msa0789110:three_prime_UTR | 25.0% |
| ! | ATGTATGTATCTATGAAAAG+AGG | + | chr5_2:76851046-76851065 | None:intergenic | 25.0% |
| ! | CAAAATCAAAATCAAATCAG+GGG | + | chr5_2:76851198-76851217 | None:intergenic | 25.0% |
| !! | TAAACAACAAAGTTTTACCT+TGG | + | chr5_2:76851878-76851897 | None:intergenic | 25.0% |
| !!! | TAAAACTTTGTTGTTTACAC+AGG | - | chr5_2:76851881-76851900 | Msa0789110:intron | 25.0% |
| ! | AAAGATTAAAGAAGAAACTG+AGG | + | chr5_2:76851945-76851964 | None:intergenic | 25.0% |
| ! | ATGCAAATTGTTTCATACAT+TGG | + | chr5_2:76852070-76852089 | None:intergenic | 25.0% |
| ! | ATTGCAACTTATTGAATACA+GGG | - | chr5_2:76852142-76852161 | Msa0789110:intron | 25.0% |
| ! | AATATCATTCAAGCATCTAA+GGG | + | chr5_2:76852341-76852360 | None:intergenic | 25.0% |
| ! | AAATATCATTCAAGCATCTA+AGG | + | chr5_2:76852342-76852361 | None:intergenic | 25.0% |
| ! | TTTAACTCAATAAGCTTCTT+AGG | - | chr5_2:76852404-76852423 | Msa0789110:intron | 25.0% |
| ! | TTAACTCAATAAGCTTCTTA+GGG | - | chr5_2:76852405-76852424 | Msa0789110:intron | 25.0% |
| ! | TGTGATTTATGCATATCTTA+TGG | - | chr5_2:76852608-76852627 | Msa0789110:intron | 25.0% |
| ! | GTGATTTATGCATATCTTAT+GGG | - | chr5_2:76852609-76852628 | Msa0789110:intron | 25.0% |
| !!! | TAGGACTTATAAATGGATTA+AGG | + | chr5_2:76852706-76852725 | None:intergenic | 25.0% |
| !!! | GACCTTTGATTTCTTTTTAT+AGG | - | chr5_2:76853052-76853071 | Msa0789110:CDS | 25.0% |
| ! | TTTCTGTTTACGTACATATA+GGG | - | chr5_2:76853190-76853209 | Msa0789110:intron | 25.0% |
| ! | GAATGAGTTTATATAATGAG+TGG | + | chr5_2:76853515-76853534 | None:intergenic | 25.0% |
| !! | GATATTTAAAGTTAGCTAGT+TGG | - | chr5_2:76854016-76854035 | Msa0789110:CDS | 25.0% |
| ! | ATTGCTGTATAAATACAACT+GGG | + | chr5_2:76854104-76854123 | None:intergenic | 25.0% |
| !!! | ACACCAGTTGATATTTTTAT+AGG | - | chr5_2:76854222-76854241 | Msa0789110:intron | 25.0% |
| ! | AAAACATAATGCAAATATGC+AGG | + | chr5_2:76855086-76855105 | None:intergenic | 25.0% |
| ! | TATTACATATAATTGCTGCA+AGG | + | chr5_2:76855191-76855210 | None:intergenic | 25.0% |
| ! | AATGCCTAAACAAAATGTAA+TGG | + | chr5_2:76855320-76855339 | None:intergenic | 25.0% |
| ATTTCAACTTCAAGGAAAGA+AGG | - | chr5_2:76850764-76850783 | Msa0789110:three_prime_UTR | 30.0% | |
| ATAGATACATACATAACCTC+AGG | - | chr5_2:76851052-76851071 | Msa0789110:three_prime_UTR | 30.0% | |
| !! | GTAACGTAACATTTTGAAAG+AGG | + | chr5_2:76851143-76851162 | None:intergenic | 30.0% |
| ATGAACCTCAACTTCATTTA+GGG | + | chr5_2:76851247-76851266 | None:intergenic | 30.0% | |
| AATGAACCTCAACTTCATTT+AGG | + | chr5_2:76851248-76851267 | None:intergenic | 30.0% | |
| TAAATGAAGTTGAGGTTCAT+TGG | - | chr5_2:76851247-76851266 | Msa0789110:exon | 30.0% | |
| ACAACTGTTTAATTCAGAAC+AGG | - | chr5_2:76851375-76851394 | Msa0789110:CDS | 30.0% | |
| AAACAAACTGTACTGTCTAA+TGG | - | chr5_2:76851439-76851458 | Msa0789110:CDS | 30.0% | |
| AATTTGTCTATGGAAGAACA+AGG | - | chr5_2:76851475-76851494 | Msa0789110:CDS | 30.0% | |
| ATGGAAGAACAAGGATTAAA+TGG | - | chr5_2:76851484-76851503 | Msa0789110:CDS | 30.0% | |
| AGGATTAAATGGCAAAATAG+AGG | - | chr5_2:76851495-76851514 | Msa0789110:CDS | 30.0% | |
| GGATTAAATGGCAAAATAGA+GGG | - | chr5_2:76851496-76851515 | Msa0789110:CDS | 30.0% | |
| ! | AGTTGAAATCGTTGATGAAA+TGG | - | chr5_2:76851636-76851655 | Msa0789110:CDS | 30.0% |
| TTGATGAAATGGAGAAATCT+AGG | - | chr5_2:76851647-76851666 | Msa0789110:CDS | 30.0% | |
| TAGAAGTCTTCATATGACTT+CGG | - | chr5_2:76851717-76851736 | Msa0789110:CDS | 30.0% | |
| GATTGCAACTTATTGAATAC+AGG | - | chr5_2:76852141-76852160 | Msa0789110:intron | 30.0% | |
| ! | TTTTCCTGGAAGATTATCAA+GGG | + | chr5_2:76852201-76852220 | None:intergenic | 30.0% |
| TTATTCTTCTTACTTGTGAG+TGG | - | chr5_2:76852255-76852274 | Msa0789110:intron | 30.0% | |
| ! | TGCTTGAATGATATTTTCTG+TGG | - | chr5_2:76852346-76852365 | Msa0789110:intron | 30.0% |
| AGGTCATCTATAAAATGACA+AGG | - | chr5_2:76852475-76852494 | Msa0789110:intron | 30.0% | |
| ATTTATGCATATCTTATGGG+AGG | - | chr5_2:76852612-76852631 | Msa0789110:intron | 30.0% | |
| TTTATGCATATCTTATGGGA+GGG | - | chr5_2:76852613-76852632 | Msa0789110:intron | 30.0% | |
| TCTGATGTAGGACTTATAAA+TGG | + | chr5_2:76852713-76852732 | None:intergenic | 30.0% | |
| TTGAAACTGAATCCATAAGT+TGG | + | chr5_2:76852767-76852786 | None:intergenic | 30.0% | |
| TTTCCTTTGAATAAGCTTGT+AGG | - | chr5_2:76852861-76852880 | Msa0789110:intron | 30.0% | |
| ! | TTTCTTTTTATAGGAAAGCC+AGG | - | chr5_2:76853061-76853080 | Msa0789110:CDS | 30.0% |
| GTTTCTGTTTACGTACATAT+AGG | - | chr5_2:76853189-76853208 | Msa0789110:intron | 30.0% | |
| ! | ATAGGCAATGTATTTTCTGT+TGG | - | chr5_2:76853285-76853304 | Msa0789110:CDS | 30.0% |
| ATTCCATGGTTAAGAATGAT+AGG | - | chr5_2:76853486-76853505 | Msa0789110:CDS | 30.0% | |
| ! | TTTTCCACTTATCTAGACAT+AGG | - | chr5_2:76853878-76853897 | Msa0789110:intron | 30.0% |
| ATGGTAAAGTGCATTTAATC+TGG | - | chr5_2:76853904-76853923 | Msa0789110:intron | 30.0% | |
| !!! | CATTTAATCTGGTTTTACTC+TGG | - | chr5_2:76853915-76853934 | Msa0789110:intron | 30.0% |
| CTTTAAATATCTCCTCTAAC+TGG | + | chr5_2:76854007-76854026 | None:intergenic | 30.0% | |
| TTGCTGTATAAATACAACTG+GGG | + | chr5_2:76854103-76854122 | None:intergenic | 30.0% | |
| GATTGCTGTATAAATACAAC+TGG | + | chr5_2:76854105-76854124 | None:intergenic | 30.0% | |
| !!! | CATTTTGATTAGATCTGCAT+AGG | + | chr5_2:76854127-76854146 | None:intergenic | 30.0% |
| ATTGTAATTGCTCAAGAACT+TGG | - | chr5_2:76854162-76854181 | Msa0789110:CDS | 30.0% | |
| TTGTAATTGCTCAAGAACTT+GGG | - | chr5_2:76854163-76854182 | Msa0789110:CDS | 30.0% | |
| GCTCCTATAAAAATATCAAC+TGG | + | chr5_2:76854228-76854247 | None:intergenic | 30.0% | |
| !! | TAGAAAGTGATTCTAAAACC+TGG | - | chr5_2:76854282-76854301 | Msa0789110:intron | 30.0% |
| ! | TGCTGTTTAAACTTGTCATT+AGG | - | chr5_2:76854338-76854357 | Msa0789110:intron | 30.0% |
| TGCTAACTCAAAAAAGTTCA+TGG | + | chr5_2:76854394-76854413 | None:intergenic | 30.0% | |
| AATTGAAATCCTTGAGCATT+TGG | - | chr5_2:76854433-76854452 | Msa0789110:CDS | 30.0% | |
| CTTTCTCATCAAGACTTAAA+CGG | + | chr5_2:76854574-76854593 | None:intergenic | 30.0% | |
| AGTTGTTACACTAGATAAAG+AGG | + | chr5_2:76854750-76854769 | None:intergenic | 30.0% | |
| CTGAGATTATTTGACAATGA+AGG | - | chr5_2:76855060-76855079 | Msa0789110:intron | 30.0% | |
| GTATGCAACACTTATCTATT+TGG | - | chr5_2:76855249-76855268 | Msa0789110:five_prime_UTR | 30.0% | |
| ! | CCAAACATTCTCAAGAATTT+TGG | + | chr5_2:76855286-76855305 | None:intergenic | 30.0% |
| CCAAAATTCTTGAGAATGTT+TGG | - | chr5_2:76855283-76855302 | Msa0789110:five_prime_UTR | 30.0% | |
| !! | GGTTCCATTACATTTTGTTT+AGG | - | chr5_2:76855313-76855332 | Msa0789110:five_prime_UTR | 30.0% |
| TAAATTAGCTGTTTGTGTTG+TGG | - | chr5_2:76855369-76855388 | Msa0789110:five_prime_UTR | 30.0% | |
| TGTAATACGACTAATCAGAA+TGG | + | chr5_2:76855398-76855417 | None:intergenic | 30.0% | |
| ACAGAGTCACATTCTTTCTA+CGG | + | chr5_2:76850700-76850719 | None:intergenic | 35.0% | |
| AGAAGAAACTTAACAGTGAG+AGG | + | chr5_2:76850859-76850878 | None:intergenic | 35.0% | |
| TTGAATCTTTCGGATCTTGT+TGG | - | chr5_2:76850968-76850987 | Msa0789110:three_prime_UTR | 35.0% | |
| TCAGGGGATAGTATAGTATA+CGG | + | chr5_2:76851182-76851201 | None:intergenic | 35.0% | |
| TCATACCCTAAATGAAGTTG+AGG | - | chr5_2:76851239-76851258 | Msa0789110:exon | 35.0% | |
| ! | TTCTATATAACTTGCAGCGT+TGG | - | chr5_2:76851270-76851289 | Msa0789110:CDS | 35.0% |
| GAACAAACACTACACCAAAA+TGG | - | chr5_2:76851340-76851359 | Msa0789110:CDS | 35.0% | |
| !! | GTTGTTGATGAACACCATTT+TGG | + | chr5_2:76851357-76851376 | None:intergenic | 35.0% |
| CTGTTTAATTCAGAACAGGA+TGG | - | chr5_2:76851379-76851398 | Msa0789110:CDS | 35.0% | |
| ! | GGAGAAATCTAGGACAAAAA+AGG | - | chr5_2:76851657-76851676 | Msa0789110:CDS | 35.0% |
| !! | ATATGAAGACTTCTAGGACT+TGG | + | chr5_2:76851712-76851731 | None:intergenic | 35.0% |
| GAAGTCATATGAAGACTTCT+AGG | + | chr5_2:76851718-76851737 | None:intergenic | 35.0% | |
| GTAGCATCTTCTGTTTCAAA+TGG | - | chr5_2:76851778-76851797 | Msa0789110:intron | 35.0% | |
| ! | TACATTTTCTTTCAGCACTC+TGG | - | chr5_2:76852016-76852035 | Msa0789110:intron | 35.0% |
| GGTTCTTTCTTTATTAAGCG+TGG | + | chr5_2:76852179-76852198 | None:intergenic | 35.0% | |
| TTTCCTGGAAGATTATCAAG+GGG | + | chr5_2:76852200-76852219 | None:intergenic | 35.0% | |
| ! | CTTTTCCTGGAAGATTATCA+AGG | + | chr5_2:76852202-76852221 | None:intergenic | 35.0% |
| ATGACCTACAATTAGCAGAA+GGG | + | chr5_2:76852462-76852481 | None:intergenic | 35.0% | |
| TTATGCATATCTTATGGGAG+GGG | - | chr5_2:76852614-76852633 | Msa0789110:intron | 35.0% | |
| ATTATTACTTGCTTCTCCCT+TGG | - | chr5_2:76852825-76852844 | Msa0789110:intron | 35.0% | |
| TTATTCAAAGGAAACCCTCA+TGG | + | chr5_2:76852855-76852874 | None:intergenic | 35.0% | |
| AGACCTACAAGCTTATTCAA+AGG | + | chr5_2:76852867-76852886 | None:intergenic | 35.0% | |
| TTTACTCTAAGCTTGAGGAA+AGG | - | chr5_2:76852914-76852933 | Msa0789110:intron | 35.0% | |
| CAACATTCAAGCAAAAACCA+AGG | - | chr5_2:76852963-76852982 | Msa0789110:intron | 35.0% | |
| ATTAGACAGATTACACACAG+CGG | + | chr5_2:76853245-76853264 | None:intergenic | 35.0% | |
| TTCCACTTCACTCTATCAAT+TGG | - | chr5_2:76853427-76853446 | Msa0789110:CDS | 35.0% | |
| !! | GCTTGTTCTGAAATATTCCA+TGG | - | chr5_2:76853472-76853491 | Msa0789110:CDS | 35.0% |
| AGACCTATCATTCTTAACCA+TGG | + | chr5_2:76853492-76853511 | None:intergenic | 35.0% | |
| AGATGGATATCAATGAAAGC+GGG | + | chr5_2:76853713-76853732 | None:intergenic | 35.0% | |
| CAGATGGATATCAATGAAAG+CGG | + | chr5_2:76853714-76853733 | None:intergenic | 35.0% | |
| CCAAATTTAAAGGTTCCAGA+TGG | + | chr5_2:76853730-76853749 | None:intergenic | 35.0% | |
| ! | CCATCTGGAACCTTTAAATT+TGG | - | chr5_2:76853727-76853746 | Msa0789110:intron | 35.0% |
| TACACCTATGTCTAGATAAG+TGG | + | chr5_2:76853885-76853904 | None:intergenic | 35.0% | |
| CTTATCTAGACATAGGTGTA+TGG | - | chr5_2:76853885-76853904 | Msa0789110:intron | 35.0% | |
| AACTTGGTTGAAAGAAAACC+AGG | + | chr5_2:76854303-76854322 | None:intergenic | 35.0% | |
| GATCTTCTTTGTGGTTTCTT+TGG | + | chr5_2:76854638-76854657 | None:intergenic | 35.0% | |
| AATTGAGATTCTGCTACATC+TGG | + | chr5_2:76854890-76854909 | None:intergenic | 35.0% | |
| GTAGCAGAATCTCAATTGAA+TGG | - | chr5_2:76854893-76854912 | Msa0789110:CDS | 35.0% | |
| ! | AGACAAACCACAACTCATTT+TGG | - | chr5_2:76854931-76854950 | Msa0789110:intron | 35.0% |
| TCTTGTACCAAAATGAGTTG+TGG | + | chr5_2:76854941-76854960 | None:intergenic | 35.0% | |
| ACAAAAGATACAATGCTGCT+TGG | + | chr5_2:76855124-76855143 | None:intergenic | 35.0% | |
| TACATATAATTGCTGCAAGG+AGG | + | chr5_2:76855188-76855207 | None:intergenic | 35.0% | |
| ATGTTGCTATAGGATACAGT+AGG | + | chr5_2:76855477-76855496 | None:intergenic | 35.0% | |
| ACATGTGGATATGTTGCTAT+AGG | + | chr5_2:76855487-76855506 | None:intergenic | 35.0% | |
| TACTTATTTGATTGCCTGTG+TGG | + | chr5_2:76855511-76855530 | None:intergenic | 35.0% | |
| AGAGTCACATTCTTTCTACG+GGG | + | chr5_2:76850698-76850717 | None:intergenic | 40.0% | |
| CAGAGTCACATTCTTTCTAC+GGG | + | chr5_2:76850699-76850718 | None:intergenic | 40.0% | |
| CAACTTCAAGGAAAGAAGGA+AGG | - | chr5_2:76850768-76850787 | Msa0789110:three_prime_UTR | 40.0% | |
| AGTAGAGTACAGGAGAAAAC+GGG | + | chr5_2:76850797-76850816 | None:intergenic | 40.0% | |
| GAGTAGAGTACAGGAGAAAA+CGG | + | chr5_2:76850798-76850817 | None:intergenic | 40.0% | |
| AGTACAGTAGAGTAGAGTAC+AGG | + | chr5_2:76850807-76850826 | None:intergenic | 40.0% | |
| ATCTTTCGGATCTTGTTGGT+CGG | - | chr5_2:76850972-76850991 | Msa0789110:three_prime_UTR | 40.0% | |
| AGCAGAAGAAAACAAACCTG+AGG | + | chr5_2:76851071-76851090 | None:intergenic | 40.0% | |
| GGATTCAGTTAACACTTCAC+TGG | - | chr5_2:76851303-76851322 | Msa0789110:CDS | 40.0% | |
| AACACTTCACTGGAAGATGA+TGG | - | chr5_2:76851313-76851332 | Msa0789110:CDS | 40.0% | |
| ACTTCGGTGAGAAAGAACAA+AGG | - | chr5_2:76851733-76851752 | Msa0789110:CDS | 40.0% | |
| AGAAAGAACAAAGGCGGAAA+AGG | - | chr5_2:76851742-76851761 | Msa0789110:intron | 40.0% | |
| CCACACATCAAATAGTGAAG+AGG | + | chr5_2:76852122-76852141 | None:intergenic | 40.0% | |
| CCTCTTCACTATTTGATGTG+TGG | - | chr5_2:76852119-76852138 | Msa0789110:intron | 40.0% | |
| ! | GAAGATGATTCAGCTTTTCC+TGG | + | chr5_2:76852215-76852234 | None:intergenic | 40.0% |
| TAGCAGAAGGGTTCAAAATG+AGG | + | chr5_2:76852450-76852469 | None:intergenic | 40.0% | |
| TGAACCCTTCTGCTAATTGT+AGG | - | chr5_2:76852455-76852474 | Msa0789110:intron | 40.0% | |
| GATGACCTACAATTAGCAGA+AGG | + | chr5_2:76852463-76852482 | None:intergenic | 40.0% | |
| AAACCCTCATGGTAATCCAA+GGG | + | chr5_2:76852844-76852863 | None:intergenic | 40.0% | |
| CCTCAAGCTTAGAGTAAAAC+TGG | + | chr5_2:76852912-76852931 | None:intergenic | 40.0% | |
| ! | CCAGTTTTACTCTAAGCTTG+AGG | - | chr5_2:76852909-76852928 | Msa0789110:intron | 40.0% |
| GGTCGAGATGTGGTTAAAAA+AGG | + | chr5_2:76853036-76853055 | None:intergenic | 40.0% | |
| AGAAATCAAAGGTCGAGATG+TGG | + | chr5_2:76853046-76853065 | None:intergenic | 40.0% | |
| AAGCTGAGATTAAGAGGCTT+AGG | - | chr5_2:76853084-76853103 | Msa0789110:CDS | 40.0% | |
| TTAGACAGATTACACACAGC+GGG | + | chr5_2:76853244-76853263 | None:intergenic | 40.0% | |
| CACCAATTGATAGAGTGAAG+TGG | + | chr5_2:76853432-76853451 | None:intergenic | 40.0% | |
| CGCTTTCATTGATATCCATC+TGG | - | chr5_2:76853712-76853731 | Msa0789110:intron | 40.0% | |
| !! | TCGTGTCGGTTCTGAAATTT+AGG | - | chr5_2:76853775-76853794 | Msa0789110:intron | 40.0% |
| ATTCTGTTGTGAAGTTGACG+TGG | + | chr5_2:76853975-76853994 | None:intergenic | 40.0% | |
| AATTGCTTAGCTCCAGTTAG+AGG | - | chr5_2:76853992-76854011 | Msa0789110:intron | 40.0% | |
| TTCACAAGTCCAAATGCTCA+AGG | + | chr5_2:76854445-76854464 | None:intergenic | 40.0% | |
| ! | GGAGATTTTGCTCTTGTAGT+TGG | + | chr5_2:76854476-76854495 | None:intergenic | 40.0% |
| TCTCAGAATAACCCCACTAA+AGG | - | chr5_2:76854596-76854615 | Msa0789110:intron | 40.0% | |
| ACAGGGCTAATTCCTTTAGT+GGG | + | chr5_2:76854611-76854630 | None:intergenic | 40.0% | |
| AACAGGGCTAATTCCTTTAG+TGG | + | chr5_2:76854612-76854631 | None:intergenic | 40.0% | |
| TTGGATGAACTGATCCTTTC+AGG | + | chr5_2:76854680-76854699 | None:intergenic | 40.0% | |
| TTTCTCTTCCCTTGTTGCAA+TGG | + | chr5_2:76854789-76854808 | None:intergenic | 40.0% | |
| GCTTAATGCTATCCTGCTAT+GGG | + | chr5_2:76854965-76854984 | None:intergenic | 40.0% | |
| TGCTTAATGCTATCCTGCTA+TGG | + | chr5_2:76854966-76854985 | None:intergenic | 40.0% | |
| GATAGCATTAAGCAAACAGC+AGG | - | chr5_2:76854972-76854991 | Msa0789110:intron | 40.0% | |
| CAAACAGCAGGAACATAATC+TGG | - | chr5_2:76854984-76855003 | Msa0789110:intron | 40.0% | |
| GACAAAAACCAGCAAGCTTT+GGG | + | chr5_2:76855154-76855173 | None:intergenic | 40.0% | |
| ! | TAAGTGTTGCATACCTCAAC+TGG | + | chr5_2:76855243-76855262 | None:intergenic | 40.0% |
| TTGAGAATGTTTGGCATCAG+CGG | - | chr5_2:76855292-76855311 | Msa0789110:five_prime_UTR | 40.0% | |
| GCATTGCTCTGTTAAACAGT+TGG | - | chr5_2:76855335-76855354 | Msa0789110:five_prime_UTR | 40.0% | |
| TCACATTCTTTCTACGGGGT+GGG | + | chr5_2:76850694-76850713 | None:intergenic | 45.0% | |
| TGACTCTGTGCGACTATTAG+TGG | - | chr5_2:76850711-76850730 | Msa0789110:three_prime_UTR | 45.0% | |
| GAAAGCGACATGATCTGATC+TGG | - | chr5_2:76850733-76850752 | Msa0789110:three_prime_UTR | 45.0% | |
| GTAGAGTACAGGAGAAAACG+GGG | + | chr5_2:76850796-76850815 | None:intergenic | 45.0% | |
| TCGATAGAAGCAAGTCAGTG+TGG | + | chr5_2:76851559-76851578 | None:intergenic | 45.0% | |
| TCGGTGAGAAAGAACAAAGG+CGG | - | chr5_2:76851736-76851755 | Msa0789110:CDS | 45.0% | |
| TCGAGGATGAGAGTCTAAAG+TGG | + | chr5_2:76851809-76851828 | None:intergenic | 45.0% | |
| TTGACTGCCCTGTTCTTAAC+CGG | + | chr5_2:76851835-76851854 | None:intergenic | 45.0% | |
| ! | GAACCCCTTGATAATCTTCC+AGG | - | chr5_2:76852194-76852213 | Msa0789110:intron | 45.0% |
| CTTACTTGTGAGTGGAAACC+AGG | - | chr5_2:76852263-76852282 | Msa0789110:intron | 45.0% | |
| ATAAAGAAATCGCCCTGTCC+TGG | + | chr5_2:76852284-76852303 | None:intergenic | 45.0% | |
| AGGGTTCAAAATGAGGCATG+AGG | + | chr5_2:76852443-76852462 | None:intergenic | 45.0% | |
| GGTTTGGCATCTTCTGATGT+AGG | + | chr5_2:76852725-76852744 | None:intergenic | 45.0% | |
| ATGCCAAACCTCGTAGAGTT+GGG | - | chr5_2:76852735-76852754 | Msa0789110:intron | 45.0% | |
| GTTGGGACAATGCCAACTTA+TGG | - | chr5_2:76852752-76852771 | Msa0789110:intron | 45.0% | |
| TTCTCCCTTGGATTACCATG+AGG | - | chr5_2:76852837-76852856 | Msa0789110:intron | 45.0% | |
| TCTCCCTTGGATTACCATGA+GGG | - | chr5_2:76852838-76852857 | Msa0789110:intron | 45.0% | |
| GAAACCCTCATGGTAATCCA+AGG | + | chr5_2:76852845-76852864 | None:intergenic | 45.0% | |
| TGAGGAAAGGATTCATGCGA+AGG | - | chr5_2:76852927-76852946 | Msa0789110:intron | 45.0% | |
| AAGGATTCATGCGAAGGAAG+TGG | - | chr5_2:76852933-76852952 | Msa0789110:intron | 45.0% | |
| TTCTTCAACTCCACCCTAGA+AGG | + | chr5_2:76853164-76853183 | None:intergenic | 45.0% | |
| !! | TTCTAGGGTGGAGTTGAAGA+AGG | - | chr5_2:76853163-76853182 | Msa0789110:intron | 45.0% |
| TTGTATGCAATCAGGCAGAC+AGG | + | chr5_2:76853219-76853238 | None:intergenic | 45.0% | |
| ATTGCCCAAGTCAAGCATGT+AGG | + | chr5_2:76853349-76853368 | None:intergenic | 45.0% | |
| TGTGAAGTTGACGTGGCATT+TGG | + | chr5_2:76853968-76853987 | None:intergenic | 45.0% | |
| AGAGCAAAATCTCCCAAGCT+TGG | - | chr5_2:76854482-76854501 | Msa0789110:CDS | 45.0% | |
| CTCTTCTTACGACCAAGCTT+GGG | + | chr5_2:76854497-76854516 | None:intergenic | 45.0% | |
| ACTCTTCTTACGACCAAGCT+TGG | + | chr5_2:76854498-76854517 | None:intergenic | 45.0% | |
| CAGGGCTAATTCCTTTAGTG+GGG | + | chr5_2:76854610-76854629 | None:intergenic | 45.0% | |
| GTGGTTTCTTTGGCTGAACA+GGG | + | chr5_2:76854628-76854647 | None:intergenic | 45.0% | |
| TGTGGTTTCTTTGGCTGAAC+AGG | + | chr5_2:76854629-76854648 | None:intergenic | 45.0% | |
| CATCCAATTCAGCAACTGCA+CGG | - | chr5_2:76854693-76854712 | Msa0789110:CDS | 45.0% | |
| AACTGCACGGACTTCATCTA+AGG | - | chr5_2:76854706-76854725 | Msa0789110:CDS | 45.0% | |
| CACCTTGTCCATTGCAACAA+GGG | - | chr5_2:76854778-76854797 | Msa0789110:CDS | 45.0% | |
| TTCCCTTGTTGCAATGGACA+AGG | + | chr5_2:76854783-76854802 | None:intergenic | 45.0% | |
| TCCACTTGTCTCATCAGACA+AGG | + | chr5_2:76854846-76854865 | None:intergenic | 45.0% | |
| !! | TCTGGCTCTATGTTCTGAGA+TGG | + | chr5_2:76854872-76854891 | None:intergenic | 45.0% |
| TTGGTACAAGAACCCATAGC+AGG | - | chr5_2:76854950-76854969 | Msa0789110:intron | 45.0% | |
| TGTTTACTCCCAAAGCTTGC+TGG | - | chr5_2:76855143-76855162 | Msa0789110:intron | 45.0% | |
| GGACAAAAACCAGCAAGCTT+TGG | + | chr5_2:76855155-76855174 | None:intergenic | 45.0% | |
| CTGCAAGGAGGAGAATCATA+AGG | + | chr5_2:76855176-76855195 | None:intergenic | 45.0% | |
| ! | TTGTCAGGTTGTTCCAGTTG+AGG | - | chr5_2:76855227-76855246 | Msa0789110:five_prime_UTR | 45.0% |
| CATATCCACATGTTCCACAC+AGG | - | chr5_2:76855494-76855513 | Msa0789110:five_prime_UTR | 45.0% | |
| !! | TTTAAATAAATAAAAAATCA+GGG | + | chr5_2:76850913-76850932 | None:intergenic | 5.0% |
| !! | ATTTAAATAAATAAAAAATC+AGG | + | chr5_2:76850914-76850933 | None:intergenic | 5.0% |
| !! | AATGTAAAAAAATAAAATAA+AGG | + | chr5_2:76852002-76852021 | None:intergenic | 5.0% |
| GTCACATTCTTTCTACGGGG+TGG | + | chr5_2:76850695-76850714 | None:intergenic | 50.0% | |
| TTCGGATCTTGTTGGTCGGT+CGG | - | chr5_2:76850976-76850995 | Msa0789110:three_prime_UTR | 50.0% | |
| !! | TGCAGCGTTGGTGTAAACGA+TGG | - | chr5_2:76851282-76851301 | Msa0789110:CDS | 50.0% |
| AGAAGCAAGTCAGTGTGGAG+AGG | + | chr5_2:76851554-76851573 | None:intergenic | 50.0% | |
| CAAAGGCGGAAAAGGTGAAG+AGG | - | chr5_2:76851750-76851769 | Msa0789110:intron | 50.0% | |
| TCGACAGCCGGTTAAGAACA+GGG | - | chr5_2:76851825-76851844 | Msa0789110:intron | 50.0% | |
| TTGTGAGTGGAAACCAGGAC+AGG | - | chr5_2:76852268-76852287 | Msa0789110:intron | 50.0% | |
| TGTGAGTGGAAACCAGGACA+GGG | - | chr5_2:76852269-76852288 | Msa0789110:intron | 50.0% | |
| GATGCCAAACCTCGTAGAGT+TGG | - | chr5_2:76852734-76852753 | Msa0789110:intron | 50.0% | |
| TGTCCCAACTCTACGAGGTT+TGG | + | chr5_2:76852741-76852760 | None:intergenic | 50.0% | |
| GCGAGCTGAGAGAAGAAAAG+AGG | - | chr5_2:76852796-76852815 | Msa0789110:intron | 50.0% | |
| GATTCATGCGAAGGAAGTGG+AGG | - | chr5_2:76852936-76852955 | Msa0789110:intron | 50.0% | |
| GCCAGGAAGCTGAGATTAAG+AGG | - | chr5_2:76853078-76853097 | Msa0789110:CDS | 50.0% | |
| GCCTCTTAATCTCAGCTTCC+TGG | + | chr5_2:76853082-76853101 | None:intergenic | 50.0% | |
| TCCAATGCCAAGCTTCTACC+AGG | - | chr5_2:76853130-76853149 | Msa0789110:CDS | 50.0% | |
| TCCTGGTAGAAGCTTGGCAT+TGG | + | chr5_2:76853134-76853153 | None:intergenic | 50.0% | |
| AACTCCACCCTAGAAGGAGT+AGG | + | chr5_2:76853158-76853177 | None:intergenic | 50.0% | |
| AGGGTGGAGTTGAAGAAGGT+TGG | - | chr5_2:76853167-76853186 | Msa0789110:intron | 50.0% | |
| ! | AGCGGGCTTTGTATGCAATC+AGG | + | chr5_2:76853227-76853246 | None:intergenic | 50.0% |
| GCATGCACATCTGTGCACTT+GGG | + | chr5_2:76853321-76853340 | None:intergenic | 50.0% | |
| TGCATGCACATCTGTGCACT+TGG | + | chr5_2:76853322-76853341 | None:intergenic | 50.0% | |
| ACGCACCTACATGCTTGACT+TGG | - | chr5_2:76853341-76853360 | Msa0789110:intron | 50.0% | |
| CGCACCTACATGCTTGACTT+GGG | - | chr5_2:76853342-76853361 | Msa0789110:intron | 50.0% | |
| ! | GTGACTTGTACACGTCGTGT+CGG | - | chr5_2:76853761-76853780 | Msa0789110:intron | 50.0% |
| GTTGACGTGGCATTTGGATG+AGG | + | chr5_2:76853962-76853981 | None:intergenic | 50.0% | |
| GGAGGGAGAGATCTTCTTTG+TGG | + | chr5_2:76854647-76854666 | None:intergenic | 50.0% | |
| TTTCAGGAGTCAGTCGAGGA+GGG | + | chr5_2:76854664-76854683 | None:intergenic | 50.0% | |
| ATCCTTTCAGGAGTCAGTCG+AGG | + | chr5_2:76854668-76854687 | None:intergenic | 50.0% | |
| AGTCCGTGCAGTTGCTGAAT+TGG | + | chr5_2:76854699-76854718 | None:intergenic | 50.0% | |
| TGCACGGACTTCATCTAAGG+CGG | - | chr5_2:76854709-76854728 | Msa0789110:CDS | 50.0% | |
| CCTTGTTGCAATGGACAAGG+TGG | + | chr5_2:76854780-76854799 | None:intergenic | 50.0% | |
| CCACCTTGTCCATTGCAACA+AGG | - | chr5_2:76854777-76854796 | Msa0789110:CDS | 50.0% | |
| TGAAGCAGCTGCAGCTATTG+AGG | - | chr5_2:76854811-76854830 | Msa0789110:CDS | 50.0% | |
| GCCTTGTCTGATGAGACAAG+TGG | - | chr5_2:76854842-76854861 | Msa0789110:CDS | 50.0% | |
| GATTGCCTGTGTGGAACATG+TGG | + | chr5_2:76855502-76855521 | None:intergenic | 50.0% | |
| TTCTACGGGGTGGGTGATGA+TGG | + | chr5_2:76850685-76850704 | None:intergenic | 55.0% | |
| CAGCAGCAGCAGCAACATAG+TGG | + | chr5_2:76851018-76851037 | None:intergenic | 55.0% | |
| CGGAAAAGGTGAAGAGGCTG+CGG | - | chr5_2:76851756-76851775 | Msa0789110:intron | 55.0% | |
| AGACTCTCATCCTCGACAGC+CGG | - | chr5_2:76851813-76851832 | Msa0789110:intron | 55.0% | |
| CTGTTCTTAACCGGCTGTCG+AGG | + | chr5_2:76851826-76851845 | None:intergenic | 55.0% | |
| CTCGACAGCCGGTTAAGAAC+AGG | - | chr5_2:76851824-76851843 | Msa0789110:intron | 55.0% | |
| !! | CAAGCTGACTCGACTGTCCA+AGG | - | chr5_2:76851858-76851877 | Msa0789110:intron | 55.0% |
| GGCATTGTCCCAACTCTACG+AGG | + | chr5_2:76852746-76852765 | None:intergenic | 55.0% | |
| GTAGGCTCCTGGTAGAAGCT+TGG | + | chr5_2:76853140-76853159 | None:intergenic | 55.0% | |
| ACCAGGAGCCTACTCCTTCT+AGG | - | chr5_2:76853147-76853166 | Msa0789110:intron | 55.0% | |
| CCAGGAGCCTACTCCTTCTA+GGG | - | chr5_2:76853148-76853167 | Msa0789110:intron | 55.0% | |
| CTTTCAGGAGTCAGTCGAGG+AGG | + | chr5_2:76854665-76854684 | None:intergenic | 55.0% | |
| ! | CTCCTCGACTGACTCCTGAA+AGG | - | chr5_2:76854663-76854682 | Msa0789110:intron | 55.0% |
| CCCTAGAAGGAGTAGGCTCC+TGG | + | chr5_2:76853151-76853170 | None:intergenic | 60.0% | |
| ! | GGAGCCTACTCCTTCTAGGG+TGG | - | chr5_2:76853151-76853170 | Msa0789110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 76850681 | 76855546 | 76850681 | ID=Msa0789110;Name=Msa0789110 |
| chr5_2 | mRNA | 76850681 | 76855546 | 76850681 | ID=Msa0789110-mRNA-1;Parent=Msa0789110;Name=Msa0789110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=407|1|1|1|0.87|0.77|9|570|463 |
| chr5_2 | exon | 76850681 | 76851757 | 76850681 | ID=Msa0789110-mRNA-1:exon:23395;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76853043 | 76853153 | 76853043 | ID=Msa0789110-mRNA-1:exon:23394;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76853243 | 76853314 | 76853243 | ID=Msa0789110-mRNA-1:exon:23393;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76853410 | 76853506 | 76853410 | ID=Msa0789110-mRNA-1:exon:23392;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76853993 | 76854064 | 76853993 | ID=Msa0789110-mRNA-1:exon:23391;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76854156 | 76854196 | 76854156 | ID=Msa0789110-mRNA-1:exon:23390;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76854348 | 76854599 | 76854348 | ID=Msa0789110-mRNA-1:exon:23389;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76854687 | 76854940 | 76854687 | ID=Msa0789110-mRNA-1:exon:23388;Parent=Msa0789110-mRNA-1 |
| chr5_2 | exon | 76855154 | 76855546 | 76855154 | ID=Msa0789110-mRNA-1:exon:23387;Parent=Msa0789110-mRNA-1 |
| chr5_2 | five_prime_UTR | 76855154 | 76855546 | 76855154 | ID=Msa0789110-mRNA-1:five_prime_utr;Parent=Msa0789110-mRNA-1 |
| chr5_2 | five_prime_UTR | 76854927 | 76854940 | 76854927 | ID=Msa0789110-mRNA-1:five_prime_utr;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76854687 | 76854926 | 76854687 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76854348 | 76854599 | 76854348 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76854156 | 76854196 | 76854156 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76853993 | 76854064 | 76853993 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76853410 | 76853506 | 76853410 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76853243 | 76853314 | 76853243 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76853043 | 76853153 | 76853043 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | CDS | 76851251 | 76851757 | 76851251 | ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1 |
| chr5_2 | three_prime_UTR | 76850681 | 76851250 | 76850681 | ID=Msa0789110-mRNA-1:three_prime_utr;Parent=Msa0789110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
