AlfalfaGEDB | Msa0789110

M. sativa cultivar zhongmu-4 / Msa0789110

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495
PFAM: PF06886.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789110	sp\|Q94C48\|WDL5_ARATH	47.703	283	137	7	83	360	70	346	1.97e-66	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789110	I3SYX8	88.387	465	39	3	1	463	1	452	0.0	805

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432690	Msa0789110	0.811760	5.957807e-51	-8.615850e-47
Msa0521320	Msa0789110	0.820697	5.979956e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789110	MtrunA17_Chr3g0137761	88.627	466	37	3	1	463	1	453	0.0	804
Msa0789110	MtrunA17_Chr1g0149361	50.526	475	200	11	1	461	2	455	2.20e-131	387
Msa0789110	MtrunA17_Chr1g0176611	44.554	202	84	4	220	417	233	410	1.67e-38	145
Msa0789110	MtrunA17_Chr7g0267791	41.743	218	100	6	104	312	130	329	3.54e-36	138
Msa0789110	MtrunA17_Chr1g0187121	60.870	92	36	0	222	313	217	308	9.11e-29	117
Msa0789110	MtrunA17_Chr1g0190551	43.697	119	63	1	214	332	191	305	2.62e-21	95.1
Msa0789110	MtrunA17_Chr7g0274281	56.566	99	39	1	213	311	207	301	6.32e-21	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0789110	AT4G32330.2	47.518	282	138	6	83	360	70	345	1.10e-68	226
Msa0789110	AT4G32330.1	47.703	283	137	7	83	360	70	346	2.00e-67	222
Msa0789110	AT4G32330.4	47.703	283	137	7	83	360	70	346	2.00e-67	222
Msa0789110	AT4G32330.3	47.703	283	137	7	83	360	70	346	2.00e-67	222
Msa0789110	AT2G25480.1	45.679	243	128	3	135	376	99	338	7.70e-58	196
Msa0789110	AT2G25480.2	45.679	243	129	3	135	376	99	339	1.27e-57	196
Msa0789110	AT2G35880.3	72.816	103	27	1	211	313	236	337	8.67e-42	154
Msa0789110	AT2G35880.2	72.816	103	27	1	211	313	236	337	8.67e-42	154
Msa0789110	AT2G35880.1	72.816	103	27	1	211	313	236	337	8.67e-42	154
Msa0789110	AT3G23090.5	54.902	102	46	0	208	309	182	283	2.55e-25	106

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Find 145 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAATGCAAATATGC+AGG	0.523599	5_2:+76851122	None:intergenic
AAACAAACTGTACTGTCTAA+TGG	0.379734	5_2:-76854766	Msa0789110:CDS
AAACAACAGTTTGAATCTTT+CGG	0.312704	5_2:-76855247	Msa0789110:five_prime_UTR
AACACTTCACTGGAAGATGA+TGG	0.565636	5_2:-76854892	Msa0789110:CDS
AACAGGGCTAATTCCTTTAG+TGG	0.473778	5_2:+76851596	None:intergenic
AACTCCACCCTAGAAGGAGT+AGG	0.629124	5_2:+76853050	None:intergenic
AACTGCACGGACTTCATCTA+AGG	0.429060	5_2:-76851499	Msa0789110:CDS
AAGCTGAGATTAAGAGGCTT+AGG	0.426472	5_2:-76853121	Msa0789110:CDS
AAGGATTCATGCGAAGGAAG+TGG	0.521232	5_2:-76853272	Msa0789110:CDS
AATGCCTAAACAAAATGTAA+TGG	0.535556	5_2:+76850888	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCAACTTCAAGGAAAGA+AGG	-	chr5_2:76850764-76850783	Msa0789110:three_prime_UTR	30.0%
ATAGATACATACATAACCTC+AGG	-	chr5_2:76851052-76851071	Msa0789110:three_prime_UTR	30.0%
ATGAACCTCAACTTCATTTA+GGG	+	chr5_2:76851247-76851266	None:intergenic	30.0%
AATGAACCTCAACTTCATTT+AGG	+	chr5_2:76851248-76851267	None:intergenic	30.0%
TAAATGAAGTTGAGGTTCAT+TGG	-	chr5_2:76851247-76851266	Msa0789110:exon	30.0%
ACAACTGTTTAATTCAGAAC+AGG	-	chr5_2:76851375-76851394	Msa0789110:CDS	30.0%
AAACAAACTGTACTGTCTAA+TGG	-	chr5_2:76851439-76851458	Msa0789110:CDS	30.0%
AATTTGTCTATGGAAGAACA+AGG	-	chr5_2:76851475-76851494	Msa0789110:CDS	30.0%
ATGGAAGAACAAGGATTAAA+TGG	-	chr5_2:76851484-76851503	Msa0789110:CDS	30.0%
AGGATTAAATGGCAAAATAG+AGG	-	chr5_2:76851495-76851514	Msa0789110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	76850681	76855546	76850681	ID=Msa0789110;Name=Msa0789110
chr5_2	mRNA	76850681	76855546	76850681	ID=Msa0789110-mRNA-1;Parent=Msa0789110;Name=Msa0789110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=407\|1\|1\|1\|0.87\|0.77\|9\|570\|463
chr5_2	exon	76850681	76851757	76850681	ID=Msa0789110-mRNA-1:exon:23395;Parent=Msa0789110-mRNA-1
chr5_2	exon	76853043	76853153	76853043	ID=Msa0789110-mRNA-1:exon:23394;Parent=Msa0789110-mRNA-1
chr5_2	exon	76853243	76853314	76853243	ID=Msa0789110-mRNA-1:exon:23393;Parent=Msa0789110-mRNA-1
chr5_2	exon	76853410	76853506	76853410	ID=Msa0789110-mRNA-1:exon:23392;Parent=Msa0789110-mRNA-1
chr5_2	exon	76853993	76854064	76853993	ID=Msa0789110-mRNA-1:exon:23391;Parent=Msa0789110-mRNA-1
chr5_2	exon	76854156	76854196	76854156	ID=Msa0789110-mRNA-1:exon:23390;Parent=Msa0789110-mRNA-1
chr5_2	exon	76854348	76854599	76854348	ID=Msa0789110-mRNA-1:exon:23389;Parent=Msa0789110-mRNA-1
chr5_2	exon	76854687	76854940	76854687	ID=Msa0789110-mRNA-1:exon:23388;Parent=Msa0789110-mRNA-1
chr5_2	exon	76855154	76855546	76855154	ID=Msa0789110-mRNA-1:exon:23387;Parent=Msa0789110-mRNA-1
chr5_2	five_prime_UTR	76855154	76855546	76855154	ID=Msa0789110-mRNA-1:five_prime_utr;Parent=Msa0789110-mRNA-1
chr5_2	five_prime_UTR	76854927	76854940	76854927	ID=Msa0789110-mRNA-1:five_prime_utr;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76854687	76854926	76854687	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76854348	76854599	76854348	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76854156	76854196	76854156	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76853993	76854064	76853993	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76853410	76853506	76853410	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76853243	76853314	76853243	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76853043	76853153	76853043	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	CDS	76851251	76851757	76851251	ID=Msa0789110-mRNA-1:cds;Parent=Msa0789110-mRNA-1
chr5_2	three_prime_UTR	76850681	76851250	76850681	ID=Msa0789110-mRNA-1:three_prime_utr;Parent=Msa0789110-mRNA-1

Gene Sequence

>Msa0789110

ATGGATTCAGTTAACACTTCACTGGAAGATGATGGACTTGAACAAACACTACACCAAAATGGTGTTCATCAACAACAACTGTTTAATTCAGAACAGGATGGCGTTGATTCAAATGTAGACTCTGTTATTACTCAAATTAAACAAACTGTACTGTCTAATGGAAATATCAATGATAATTTGTCTATGGAAGAACAAGGATTAAATGGCAAAATAGAGGGAAACAATGTTAATGTTTTCAAGGATGAGGAAGTTGAAATCGTTGATGAAATGGAGAAATCTAGGACAAAAAAGGATCTTGTCAAGAATAAGAATTCAAAATTGCCAAGTCCTAGAAGTCTTCATATGACTTCGGTGAGAAAGAACAAAGGCGGAAAAGGTGAAGAGGCTGCGGTAGCATCTTCTGTTTCAAATGGTACTTCCACTTTAGACTCTCATCCTCGACAGCCGGTTAAGAACAGGGCAGTCAATGACAAGCTGACTCGACTGTCCAAGCACTCTGGAAAGACTGATGCTGCATCTACTGAAGCACCAATGGAGAAGACTAGACCACGCTTAATAAAGAAAGAACCCCTTGATAATCTTCCAGGAAAAGCTGAATCATCTTCTCCTACATCAGAAGATGCCAAACCTCGTAGAGTTGGGACAATGCCAACTTATGGATTCAGTTTCAAATGTAATGAGCGAGCTGAGAGAAGAAAAGAGTTTTACTCTAAGCTTGAGGAAAGGATTCATGCGAAGGAAGTGGAGGAGAGCAACATTCAAGCAAAAACCAAGGAAAGCCAGGAAGCTGAGATTAAGAGGCTTAGGAAAAAACTAGCATTTAAAGCAACTCCAATGCCAAGCTTCTACCAGGAGCCTACTCCTTCTAGGGTGGAGTTGAAGAAGATACCAACTACAAGAGCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTTCAACAACGTCTTCAGAGCTAGATGTAAACACTAACAGCAGTGCTCAAAAATGCCGTTTAAGTCTTGATGAGAAAGTGTCTCAGAATAACCCCACTAAAGGAATTAGCCCTGTTCAGCCAAAGAAACCACAAAGAAGATCTCTCCCTCCTCGACTGACTCCTGAAAGGATCAGTTCATCCAATTCAGCAACTGCACGGACTTCATCTAAGGCGGTGAATGACGAGAAAACCTCTTTATCTAGTGTAACAACTGAAGTTACCACCTTGTCCATTGCAACAAGGGAAGAGAAAGTTGAAGCAGCTGCAGCTATTGAGGAGAGCAATGCCTTGTCTGATGAGACAAGTGGAACTCCATCTCAGAACATAGAGCCAGATGTAGCAGAATCTCAATTGAATGGTGATATAGTGATTGAAGACAAACCACAACTCATTTTGGTACAAGAACCCATAGCAGGATAG

Protein sequence

>Msa0789110

MDSVNTSLEDDGLEQTLHQNGVHQQQLFNSEQDGVDSNVDSVITQIKQTVLSNGNINDNLSMEEQGLNGKIEGNNVNVFKDEEVEIVDEMEKSRTKKDLVKNKNSKLPSPRSLHMTSVRKNKGGKGEEAAVASSVSNGTSTLDSHPRQPVKNRAVNDKLTRLSKHSGKTDAASTEAPMEKTRPRLIKKEPLDNLPGKAESSSPTSEDAKPRRVGTMPTYGFSFKCNERAERRKEFYSKLEERIHAKEVEESNIQAKTKESQEAEIKRLRKKLAFKATPMPSFYQEPTPSRVELKKIPTTRAKSPKLGRKKSSTTSSELDVNTNSSAQKCRLSLDEKVSQNNPTKGISPVQPKKPQRRSLPPRLTPERISSSNSATARTSSKAVNDEKTSLSSVTTEVTTLSIATREEKVEAAAAIEESNALSDETSGTPSQNIEPDVAESQLNGDIVIEDKPQLILVQEPIAG*