AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521320 MtrunA17_Chr3g0137761 88.627 466 37 3 1 463 1 453 0.0 805
Msa0521320 MtrunA17_Chr1g0149361 50.737 475 199 11 1 461 2 455 6.59e-132 389
Msa0521320 MtrunA17_Chr1g0176611 44.554 202 84 5 220 417 233 410 5.26e-38 144
Msa0521320 MtrunA17_Chr7g0267791 41.743 218 100 6 104 312 130 329 1.08e-36 139
Msa0521320 MtrunA17_Chr1g0187121 60.870 92 36 0 222 313 217 308 9.66e-29 116
Msa0521320 MtrunA17_Chr1g0190551 52.688 93 40 1 214 306 191 279 3.23e-21 95.1
Msa0521320 MtrunA17_Chr7g0274281 56.566 99 39 1 213 311 207 301 5.54e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521320 AT4G32330.2 47.518 282 138 6 83 360 70 345 2.35e-69 227
Msa0521320 AT4G32330.1 47.703 283 137 7 83 360 70 346 2.79e-68 224
Msa0521320 AT4G32330.4 47.703 283 137 7 83 360 70 346 2.79e-68 224
Msa0521320 AT4G32330.3 47.703 283 137 7 83 360 70 346 2.79e-68 224
Msa0521320 AT2G25480.1 45.679 243 128 3 135 376 99 338 7.00e-58 196
Msa0521320 AT2G25480.2 45.679 243 129 3 135 376 99 339 1.14e-57 196
Msa0521320 AT2G35880.3 72.816 103 27 1 211 313 236 337 8.16e-42 154
Msa0521320 AT2G35880.2 72.816 103 27 1 211 313 236 337 8.16e-42 154
Msa0521320 AT2G35880.1 72.816 103 27 1 211 313 236 337 8.16e-42 154
Msa0521320 AT3G23090.1 54.902 102 46 0 208 309 181 282 2.66e-25 106
Msa0521320 AT3G23090.5 54.902 102 46 0 208 309 182 283 2.87e-25 106
Msa0521320 AT3G23090.4 54.902 102 46 0 208 309 217 318 5.41e-25 106
Msa0521320 AT3G23090.2 52.830 106 46 1 208 309 181 286 2.09e-24 104
Msa0521320 AT3G23090.3 52.830 106 46 1 208 309 217 322 4.33e-24 103
Msa0521320 AT3G04630.1 52.747 91 41 1 218 306 122 212 1.30e-22 97.8
Msa0521320 AT3G04630.3 52.747 91 41 1 218 306 126 216 1.40e-22 97.8
Msa0521320 AT5G28646.3 47.899 119 54 3 214 328 80 194 1.51e-22 95.5
Msa0521320 AT3G04630.2 52.747 91 41 1 218 306 121 211 1.55e-22 97.8
Msa0521320 AT5G28646.2 47.899 119 54 3 214 328 84 198 1.58e-22 95.5
Msa0521320 AT5G28646.1 47.899 119 54 3 214 328 84 198 1.58e-22 95.5
Msa0521320 AT1G70950.1 69.841 63 19 0 221 283 328 390 2.09e-22 100
Msa0521320 AT1G54460.1 47.863 117 56 2 198 313 145 257 7.67e-22 96.7

Find 146 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACATTCTCAAGAATTT+TGG 0.132556 3_4:-73982681 None:intergenic
GATCTTCTTTGTGGTTTCTT+TGG 0.168066 3_4:-73982033 None:intergenic
GTATGCAACACTTATCTATT+TGG 0.185118 3_4:+73982647 Msa0521320:three_prime_UTR
TTGGATGAACTGATCCTTTC+AGG 0.194545 3_4:-73982075 None:intergenic
AGACAAACCACAACTCATTT+TGG 0.224152 3_4:+73982329 Msa0521320:CDS
TGTGGTTTCTTTGGCTGAAC+AGG 0.226403 3_4:-73982024 None:intergenic
CCAAAATTCTTGAGAATGTT+TGG 0.258230 3_4:+73982681 Msa0521320:three_prime_UTR
GCCTCTTAATCTCAGCTTCC+TGG 0.282090 3_4:-73980476 None:intergenic
AAACAACAGTTTGAATCTTT+CGG 0.312704 3_4:+73978356 Msa0521320:five_prime_UTR
GAACCCCTTGATAATCTTCC+AGG 0.318461 3_4:+73979591 Msa0521320:CDS
TGTTTACTCCCAAAGCTTGC+TGG 0.322251 3_4:+73982541 Msa0521320:three_prime_UTR
ATGGAAGAACAAGGATTAAA+TGG 0.328736 3_4:+73978882 Msa0521320:CDS
GAAGTCATATGAAGACTTCT+AGG 0.332240 3_4:-73979113 None:intergenic
ACCAGGAGCCTACTCCTTCT+AGG 0.337669 3_4:+73980544 Msa0521320:CDS
GAACAAACACTACACCAAAA+TGG 0.342296 3_4:+73978738 Msa0521320:CDS
GTTGGGACAATGCCAACTTA+TGG 0.342732 3_4:+73980149 Msa0521320:CDS
TATCAATGATAATTTGTCTA+TGG 0.352840 3_4:+73978863 Msa0521320:CDS
ACAATTAAATTTCAACTTCA+AGG 0.366985 3_4:+73978152 Msa0521320:five_prime_UTR
AGTTGAAATCGTTGATGAAA+TGG 0.373626 3_4:+73979034 Msa0521320:CDS
AAACAAACTGCACTGTCTAA+TGG 0.379381 3_4:+73978837 Msa0521320:CDS
TGCTTAATGCTATCCTGCTA+TGG 0.379385 3_4:-73982361 None:intergenic
CTCGACAGCCGGTTAAGAAC+AGG 0.385189 3_4:+73979222 Msa0521320:CDS
TTGACTGCCCTGTTCTTAAC+CGG 0.385934 3_4:-73979230 None:intergenic
CTTTCTCATCAAGACTTAAA+CGG 0.397130 3_4:-73981969 None:intergenic
TTCTTCAACTCCACCCTAGA+AGG 0.399718 3_4:-73980558 None:intergenic
TTCTACGGGGTGGGTGATGA+TGG 0.400848 3_4:-73978078 None:intergenic
GTTGTTTATGAACACCATTT+TGG 0.402579 3_4:-73978752 None:intergenic
TAAGTGTTGCATACCTCAAC+TGG 0.402665 3_4:-73982638 None:intergenic
TGACTCTGTGCGACTATTAG+TGG 0.404402 3_4:+73978107 Msa0521320:five_prime_UTR
CAAACAGCAGGAACATAATC+TGG 0.410923 3_4:+73982382 Msa0521320:three_prime_UTR
AGTCCGTGCAGTTGCTGAAT+TGG 0.411034 3_4:-73982094 None:intergenic
AATTGAGATTCTGCTACATC+TGG 0.413515 3_4:-73982285 None:intergenic
TGAAGCAGCTGCAGCTATTG+AGG 0.421562 3_4:+73982209 Msa0521320:CDS
GCTTAATGCTATCCTGCTAT+GGG 0.424527 3_4:-73982360 None:intergenic
AAGCTGAGATTAAGAGGCTT+AGG 0.426472 3_4:+73980481 Msa0521320:CDS
AACTGCACGGACTTCATCTA+AGG 0.429060 3_4:+73982104 Msa0521320:CDS
TTGAATCTTTCGGATCTTGT+TGG 0.433270 3_4:+73978366 Msa0521320:five_prime_UTR
TTTGGTGTAGTGTTTGTTCA+AGG 0.434141 3_4:-73978734 None:intergenic
TTCAGTTGTTACACTAGATA+AGG 0.435015 3_4:-73982148 None:intergenic
TAATAATATAAATATTTGTC+AGG 0.436033 3_4:+73982610 Msa0521320:three_prime_UTR
GGAGGGAGAGATCTTCTTTG+TGG 0.439601 3_4:-73982042 None:intergenic
AGTAGAGTACAGGAGAAAAC+GGG 0.441163 3_4:-73978190 None:intergenic
ACAACTGTTTAATTCAGAAC+AGG 0.442289 3_4:+73978773 Msa0521320:CDS
TGTCCCAACTCTACGAGGTT+TGG 0.442849 3_4:-73980135 None:intergenic
GAGTAGAGTACAGGAGAAAA+CGG 0.448444 3_4:-73978191 None:intergenic
TTTCTCTTCCCTTGTTGCAA+TGG 0.452310 3_4:-73982184 None:intergenic
TTGATGAAATGGAGAAATCT+AGG 0.454744 3_4:+73979045 Msa0521320:CDS
ACAGAGTCACATTCTTTCTA+CGG 0.458377 3_4:-73978093 None:intergenic
AGGATTAAATGGCAAAATAG+AGG 0.462425 3_4:+73978893 Msa0521320:CDS
GTAGCATCTTCTGTTTCAAA+TGG 0.464133 3_4:+73979176 Msa0521320:CDS
GAAAGCGACATGATCTGATC+TGG 0.464989 3_4:+73978129 Msa0521320:five_prime_UTR
GCCAGGAAGCTGAGATTAAG+AGG 0.465254 3_4:+73980475 Msa0521320:CDS
ATTTCAACTTCAAGGAAAGA+AGG 0.469962 3_4:+73978160 Msa0521320:five_prime_UTR
AACAGGGCTAATTCCTTTAG+TGG 0.473778 3_4:-73982007 None:intergenic
TTCTAGGGTGGAGTTGAAGA+AGG 0.474020 3_4:+73980560 Msa0521320:CDS
CTGAGATTATTTGACAATGA+AGG 0.476122 3_4:+73982458 Msa0521320:three_prime_UTR
ACTCTTCTTACGACCAAGCT+TGG 0.479893 3_4:-73981893 None:intergenic
GGATTCAGTTAACACTTCAC+TGG 0.481211 3_4:+73978701 Msa0521320:CDS
TTCGGATCTTGTTGGTCGGT+CGG 0.482880 3_4:+73978374 Msa0521320:five_prime_UTR
CTCTTCTTACGACCAAGCTT+GGG 0.483203 3_4:-73981892 None:intergenic
CAGAGTCACATTCTTTCTAC+GGG 0.484596 3_4:-73978092 None:intergenic
ACATGTGGATATGTTGCTAT+AGG 0.488864 3_4:-73982882 None:intergenic
ATGCCAAACCTCGTAGAGTT+GGG 0.490023 3_4:+73980132 Msa0521320:CDS
ACAGGGCTAATTCCTTTAGT+GGG 0.491541 3_4:-73982006 None:intergenic
TTCCCTTGTTGCAATGGACA+AGG 0.498349 3_4:-73982178 None:intergenic
CCAGGAGCCTACTCCTTCTA+GGG 0.502058 3_4:+73980545 Msa0521320:CDS
GGTTTGGCATCTTCTGATGT+AGG 0.503553 3_4:-73980119 None:intergenic
TTGAAACTGAATCCATAAGT+TGG 0.507092 3_4:-73980161 None:intergenic
GCATTGCTCTGTTAAACAGT+TGG 0.507693 3_4:+73982733 Msa0521320:three_prime_UTR
ATCTTTCGGATCTTGTTGGT+CGG 0.507989 3_4:+73978370 Msa0521320:five_prime_UTR
TTGTCAGGTTGTTCCAGTTG+AGG 0.512174 3_4:+73982625 Msa0521320:three_prime_UTR
GTGGTTTCTTTGGCTGAACA+GGG 0.512858 3_4:-73982023 None:intergenic
GATGCCAAACCTCGTAGAGT+TGG 0.513113 3_4:+73980131 Msa0521320:CDS
GTCACATTCTTTCTACGGGG+TGG 0.514269 3_4:-73978088 None:intergenic
TCCTGGTAGAAGCTTGGCAT+TGG 0.514744 3_4:-73980528 None:intergenic
ATATGAAGACTTCTAGGACT+TGG 0.516716 3_4:-73979107 None:intergenic
TCTCAGAATAACCCCACTAA+AGG 0.516819 3_4:+73981994 Msa0521320:CDS
TCCAATGCCAAGCTTCTACC+AGG 0.517321 3_4:+73980527 Msa0521320:CDS
CCCTAGAAGGAGTAGGCTCC+TGG 0.521015 3_4:-73980545 None:intergenic
AAGGATTCATGCGAAGGAAG+TGG 0.521232 3_4:+73980330 Msa0521320:CDS
AAAACATAATGCAAATATGC+AGG 0.523599 3_4:-73982481 None:intergenic
TACTTATTTGATTGCCTGTG+TGG 0.527236 3_4:-73982906 None:intergenic
ATAGATACATACATAACCTC+AGG 0.534232 3_4:+73978450 Msa0521320:five_prime_UTR
AGACTCTCATCCTCGACAGC+CGG 0.534706 3_4:+73979211 Msa0521320:CDS
AATGCCTAAACAAAATGTAA+TGG 0.535556 3_4:-73982715 None:intergenic
ACAAAAGATACAATGCTGCT+TGG 0.538614 3_4:-73982519 None:intergenic
TTGGTACAAGAACCCATAGC+AGG 0.540838 3_4:+73982348 Msa0521320:CDS
CAGCAGCAGCAGCAACATAG+TGG 0.541603 3_4:-73978413 None:intergenic
AGAAAGAACAAAGACGGAAA+AGG 0.541738 3_4:+73979140 Msa0521320:CDS
CACCTTGTCCATTGCAACAA+GGG 0.541747 3_4:+73982176 Msa0521320:CDS
TAAATTAGCTGTTTGTGTTG+TGG 0.542238 3_4:+73982767 Msa0521320:three_prime_UTR
TCTGGCTCTATGTTCTGAGA+TGG 0.545911 3_4:-73982267 None:intergenic
CTGCAAGGAGGAGAATCATA+AGG 0.546424 3_4:-73982571 None:intergenic
GTAGCAGAATCTCAATTGAA+TGG 0.549239 3_4:+73982291 Msa0521320:CDS
CTGTTCTTAACCGGCTGTCG+AGG 0.550219 3_4:-73979221 None:intergenic
TCACATTCTTTCTACGGGGT+GGG 0.552731 3_4:-73978087 None:intergenic
GCGAGCTGAGAGAAGAAAAG+AGG 0.553578 3_4:+73980193 Msa0521320:CDS
AGAGCAAAATCTCCCAAGCT+TGG 0.555915 3_4:+73981880 Msa0521320:CDS
GTAGGCTCCTGGTAGAAGCT+TGG 0.558222 3_4:-73980534 None:intergenic
AGAAGAAACTTAACAGTGAG+AGG 0.562542 3_4:-73978256 None:intergenic
TCTTGTACCAAAATGAGTTG+TGG 0.564689 3_4:-73982336 None:intergenic
CCACCTTGTCCATTGCAACA+AGG 0.567508 3_4:+73982175 Msa0521320:CDS
GATAGCATTAAGCAAACAGC+AGG 0.572590 3_4:+73982370 Msa0521320:exon
CAACTTCAAGGAAAGAAGGA+AGG 0.573030 3_4:+73978164 Msa0521320:five_prime_UTR
ATGTATGTATCTATGAAAAG+AGG 0.576032 3_4:-73978441 None:intergenic
CAAGCTGACTCGACTGTCCA+AGG 0.578035 3_4:+73979256 Msa0521320:CDS
TTGAGAATGTTTGGCATCAG+CGG 0.578959 3_4:+73982690 Msa0521320:three_prime_UTR
GGTTCTTTCTTTATTAAGCG+TGG 0.580191 3_4:-73979573 None:intergenic
GGATTAAATGGCAAAATAGA+GGG 0.583012 3_4:+73978894 Msa0521320:CDS
AACACTTCACTGGAAGATGA+TGG 0.583650 3_4:+73978711 Msa0521320:CDS
TTTACTCTAAGCTTGAGGAA+AGG 0.592432 3_4:+73980311 Msa0521320:CDS
CGGAAAAGGTGAAGAGGCTG+CGG 0.593404 3_4:+73979154 Msa0521320:CDS
CTCCTCGACTGACTCCTGAA+AGG 0.594114 3_4:+73982061 Msa0521320:CDS
TGTAATACGACTAATCAGAA+TGG 0.595287 3_4:-73982793 None:intergenic
AGTACAGTAGAGTAGAGTAC+AGG 0.597123 3_4:-73978200 None:intergenic
AGTTGTTACACTAGATAAGG+AGG 0.597207 3_4:-73982145 None:intergenic
TAGAAGTCTTCATATGACTT+CGG 0.599550 3_4:+73979115 Msa0521320:CDS
TGAGGAAAGGATTCATGCGA+AGG 0.601101 3_4:+73980324 Msa0521320:CDS
CTTTCAGGAGTCAGTCGAGG+AGG 0.604733 3_4:-73982060 None:intergenic
TTTCAGGAGTCAGTCGAGGA+GGG 0.609189 3_4:-73982059 None:intergenic
TGCAGCGTTGGTGTAAACGA+TGG 0.614185 3_4:+73978680 Msa0521320:intron
CAAAGACGGAAAAGGTGAAG+AGG 0.614474 3_4:+73979148 Msa0521320:CDS
TCGAGGATGAGAGTCTAAAG+TGG 0.615745 3_4:-73979204 None:intergenic
CAGGGCTAATTCCTTTAGTG+GGG 0.617483 3_4:-73982005 None:intergenic
TCGACAGCCGGTTAAGAACA+GGG 0.621749 3_4:+73979223 Msa0521320:CDS
GATTCATGCGAAGGAAGTGG+AGG 0.623695 3_4:+73980333 Msa0521320:CDS
AACTCCACCCTAGAAGGAGT+AGG 0.629124 3_4:-73980552 None:intergenic
GATTGCCTGTGTGGAACATG+TGG 0.635575 3_4:-73982897 None:intergenic
TCGGTGAGAAAGAACAAAGA+CGG 0.640205 3_4:+73979134 Msa0521320:CDS
CATCCAATTCAGCAACTGCA+CGG 0.641669 3_4:+73982091 Msa0521320:CDS
GCCTTGTCTGATGAGACAAG+TGG 0.643159 3_4:+73982240 Msa0521320:CDS
TATTACATATAATTGCTGCA+AGG 0.643725 3_4:-73982586 None:intergenic
ATCCTTTCAGGAGTCAGTCG+AGG 0.644922 3_4:-73982063 None:intergenic
TCCACTTGTCTCATCAGACA+AGG 0.648448 3_4:-73982241 None:intergenic
GGAGCCTACTCCTTCTAGGG+TGG 0.650646 3_4:+73980548 Msa0521320:CDS
TACATATAATTGCTGCAAGG+AGG 0.654039 3_4:-73982583 None:intergenic
GGCATTGTCCCAACTCTACG+AGG 0.655109 3_4:-73980140 None:intergenic
CTGTTTAATTCAGAACAGGA+TGG 0.660275 3_4:+73978777 Msa0521320:CDS
ATGTTGCTATAGGATACAGT+AGG 0.662414 3_4:-73982872 None:intergenic
CCTTGTTGCAATGGACAAGG+TGG 0.666267 3_4:-73982175 None:intergenic
TGCACGGACTTCATCTAAGG+CGG 0.675302 3_4:+73982107 Msa0521320:CDS
TTTCCTGGAAGATTATCAAG+GGG 0.677776 3_4:-73979594 None:intergenic
CATATCCACATGTTCCACAC+AGG 0.693283 3_4:+73982892 Msa0521320:three_prime_UTR
GTAGAGTACAGGAGAAAACG+GGG 0.716200 3_4:-73978189 None:intergenic
AATTTGTCTATGGAAGAACA+AGG 0.717987 3_4:+73978873 Msa0521320:CDS
AGAGTCACATTCTTTCTACG+GGG 0.765002 3_4:-73978091 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAATAAAAAATCAG+GGG - chr3_4:73978312-73978331 None:intergenic 10.0%
!!! ATGTATTTTGAAATTATTAT+AGG + chr3_4:73979004-73979023 Msa0521320:intron 10.0%
!! AGAATAAAAACAATAAAAAA+AGG - chr3_4:73979639-73979658 None:intergenic 10.0%
!! TAATAATATAAATATTTGTC+AGG + chr3_4:73982610-73982629 Msa0521320:three_prime_UTR 10.0%
!! TAATAATTTCAAAATACATG+AGG - chr3_4:73979003-73979022 None:intergenic 15.0%
!!! AATTTTTAAAATTAGAGAGA+AGG + chr3_4:73979978-73979997 Msa0521320:intron 15.0%
!!! ATTTTTAAAATTAGAGAGAA+GGG + chr3_4:73979979-73979998 Msa0521320:intron 15.0%
!!! TGTAAATTAGTTTACAATTA+TGG + chr3_4:73980064-73980083 Msa0521320:intron 15.0%
!! AGATCAATAATATAATATGA+AGG - chr3_4:73981648-73981667 None:intergenic 15.0%
!! ACAATTAAATTTCAACTTCA+AGG + chr3_4:73978152-73978171 Msa0521320:five_prime_UTR 20.0%
!! TCAAAATCAAAATCAAATCA+GGG - chr3_4:73978597-73978616 None:intergenic 20.0%
!! ATCAAAATCAAAATCAAATC+AGG - chr3_4:73978598-73978617 None:intergenic 20.0%
!!! TATCAATGATAATTTGTCTA+TGG + chr3_4:73978863-73978882 Msa0521320:CDS 20.0%
!!! AAACAATGTTAATGTTTTCA+AGG + chr3_4:73978917-73978936 Msa0521320:CDS 20.0%
!!! TTTGAAATTATTATAGGATG+AGG + chr3_4:73979010-73979029 Msa0521320:intron 20.0%
!!! AGTTTCTTCTTTAATCTTTT+TGG + chr3_4:73979344-73979363 Msa0521320:intron 20.0%
!! TGTAATGAAAATTATAGTGT+TGG + chr3_4:73979370-73979389 Msa0521320:intron 20.0%
!! ATATCACAATAGTAAGTTTA+TGG + chr3_4:73979699-73979718 Msa0521320:intron 20.0%
!! TATCACAATAGTAAGTTTAT+GGG + chr3_4:73979700-73979719 Msa0521320:intron 20.0%
!! AATTTGAACAAACATTGTTA+GGG - chr3_4:73979911-73979930 None:intergenic 20.0%
!! TAATTTGAACAAACATTGTT+AGG - chr3_4:73979912-73979931 None:intergenic 20.0%
!! AGTTTACAATTATGGTTTAA+TGG + chr3_4:73980072-73980091 Msa0521320:intron 20.0%
!!! GTCTAAAAAAGTTCATATTT+TGG + chr3_4:73980280-73980299 Msa0521320:intron 20.0%
!!! TAAAAAAGTTCATATTTTGG+TGG + chr3_4:73980283-73980302 Msa0521320:intron 20.0%
!! ATATATTATGATTATCACCT+TGG - chr3_4:73980380-73980399 None:intergenic 20.0%
!! AATCATAATATATGATAGCT+AGG + chr3_4:73980387-73980406 Msa0521320:intron 20.0%
!! TTCCTATAAAAAGAAATCAA+AGG - chr3_4:73980454-73980473 None:intergenic 20.0%
!!! GTAATCTGTCTAATTATTTT+CGG + chr3_4:73980648-73980667 Msa0521320:intron 20.0%
!!! TTTCGGTTTTTTTAAACTAT+AGG + chr3_4:73980665-73980684 Msa0521320:intron 20.0%
!! AACTATGATTTCAATTTGAA+TGG + chr3_4:73981020-73981039 Msa0521320:intron 20.0%
!! AAAACACAAACCAAATTTAA+AGG - chr3_4:73981138-73981157 None:intergenic 20.0%
!!! TATCTGATTCTAAAAATGAA+TGG + chr3_4:73981230-73981249 Msa0521320:intron 20.0%
!!! TTAGATTTCAAAATTTGTTC+AGG - chr3_4:73981587-73981606 None:intergenic 20.0%
! AAACAACAGTTTGAATCTTT+CGG + chr3_4:73978356-73978375 Msa0521320:five_prime_UTR 25.0%
! ATGTATGTATCTATGAAAAG+AGG - chr3_4:73978444-73978463 None:intergenic 25.0%
! CAAAATCAAAATCAAATCAG+GGG - chr3_4:73978596-73978615 None:intergenic 25.0%
!! TAAACAACAAAGTTTTACCT+TGG - chr3_4:73979276-73979295 None:intergenic 25.0%
!!! TAAAACTTTGTTGTTTACAC+AGG + chr3_4:73979279-73979298 Msa0521320:intron 25.0%
! AAAGATTAAAGAAGAAACTG+AGG - chr3_4:73979343-73979362 None:intergenic 25.0%
! ATGCAAATTGTTTCATACAT+TGG - chr3_4:73979467-73979486 None:intergenic 25.0%
! ATTGCAACTTATTGAATACA+GGG + chr3_4:73979539-73979558 Msa0521320:intron 25.0%
! AATATCATTCAAGCATCTAA+GGG - chr3_4:73979738-73979757 None:intergenic 25.0%
! AAATATCATTCAAGCATCTA+AGG - chr3_4:73979739-73979758 None:intergenic 25.0%
! TTTAACTCAATAAGCTTCTT+AGG + chr3_4:73979801-73979820 Msa0521320:intron 25.0%
! TTAACTCAATAAGCTTCTTA+GGG + chr3_4:73979802-73979821 Msa0521320:intron 25.0%
! TGTGATTTATGCATATCTTA+TGG + chr3_4:73980005-73980024 Msa0521320:intron 25.0%
! GTGATTTATGCATATCTTAT+GGG + chr3_4:73980006-73980025 Msa0521320:intron 25.0%
!!! TAGGACTTATAAATGGATTA+AGG - chr3_4:73980103-73980122 None:intergenic 25.0%
!!! GACCTTTGATTTCTTTTTAT+AGG + chr3_4:73980449-73980468 Msa0521320:intron 25.0%
! TTTCTGTTTACGTACATATA+GGG + chr3_4:73980587-73980606 Msa0521320:intron 25.0%
! GAATGAGTTTATATAATGAG+TGG - chr3_4:73980913-73980932 None:intergenic 25.0%
!! GATATTTAAAGTTAGCTAGT+TGG + chr3_4:73981414-73981433 Msa0521320:intron 25.0%
! ATTGCTGTATAAATACAACT+GGG - chr3_4:73981502-73981521 None:intergenic 25.0%
!!! TACACCAGTTGATATTTTTA+TGG + chr3_4:73981619-73981638 Msa0521320:intron 25.0%
!!! ACACCAGTTGATATTTTTAT+GGG + chr3_4:73981620-73981639 Msa0521320:intron 25.0%
! AAAACATAATGCAAATATGC+AGG - chr3_4:73982484-73982503 None:intergenic 25.0%
! TATTACATATAATTGCTGCA+AGG - chr3_4:73982589-73982608 None:intergenic 25.0%
! AATGCCTAAACAAAATGTAA+TGG - chr3_4:73982718-73982737 None:intergenic 25.0%
ATTTCAACTTCAAGGAAAGA+AGG + chr3_4:73978160-73978179 Msa0521320:five_prime_UTR 30.0%
ATAGATACATACATAACCTC+AGG + chr3_4:73978450-73978469 Msa0521320:five_prime_UTR 30.0%
!! GTAACGTAACATTTTGAAAG+AGG - chr3_4:73978541-73978560 None:intergenic 30.0%
ATGAACCTCAACTTCATTTA+GGG - chr3_4:73978645-73978664 None:intergenic 30.0%
AATGAACCTCAACTTCATTT+AGG - chr3_4:73978646-73978665 None:intergenic 30.0%
TAAATGAAGTTGAGGTTCAT+TGG + chr3_4:73978645-73978664 Msa0521320:intron 30.0%
! GTTGTTTATGAACACCATTT+TGG - chr3_4:73978755-73978774 None:intergenic 30.0%
ACAACTGTTTAATTCAGAAC+AGG + chr3_4:73978773-73978792 Msa0521320:CDS 30.0%
AATTTGTCTATGGAAGAACA+AGG + chr3_4:73978873-73978892 Msa0521320:CDS 30.0%
ATGGAAGAACAAGGATTAAA+TGG + chr3_4:73978882-73978901 Msa0521320:CDS 30.0%
AGGATTAAATGGCAAAATAG+AGG + chr3_4:73978893-73978912 Msa0521320:CDS 30.0%
GGATTAAATGGCAAAATAGA+GGG + chr3_4:73978894-73978913 Msa0521320:CDS 30.0%
! AGTTGAAATCGTTGATGAAA+TGG + chr3_4:73979034-73979053 Msa0521320:CDS 30.0%
TTGATGAAATGGAGAAATCT+AGG + chr3_4:73979045-73979064 Msa0521320:CDS 30.0%
TAGAAGTCTTCATATGACTT+CGG + chr3_4:73979115-73979134 Msa0521320:CDS 30.0%
GATTGCAACTTATTGAATAC+AGG + chr3_4:73979538-73979557 Msa0521320:intron 30.0%
! TTTTCCTGGAAGATTATCAA+GGG - chr3_4:73979598-73979617 None:intergenic 30.0%
TTATTCTTCTTACTTGTGAG+TGG + chr3_4:73979652-73979671 Msa0521320:intron 30.0%
! TGCTTGAATGATATTTTCTG+TGG + chr3_4:73979743-73979762 Msa0521320:intron 30.0%
AGGTCATCTATAAAATGACA+AGG + chr3_4:73979872-73979891 Msa0521320:intron 30.0%
ATTTATGCATATCTTATGGG+AGG + chr3_4:73980009-73980028 Msa0521320:intron 30.0%
TTTATGCATATCTTATGGGA+GGG + chr3_4:73980010-73980029 Msa0521320:intron 30.0%
TCTGATGTAGGACTTATAAA+TGG - chr3_4:73980110-73980129 None:intergenic 30.0%
TTGAAACTGAATCCATAAGT+TGG - chr3_4:73980164-73980183 None:intergenic 30.0%
TTTCCTTTGAATAAGCTTGT+AGG + chr3_4:73980258-73980277 Msa0521320:intron 30.0%
! TTTCTTTTTATAGGAAAGCC+AGG + chr3_4:73980458-73980477 Msa0521320:intron 30.0%
GTTTCTGTTTACGTACATAT+AGG + chr3_4:73980586-73980605 Msa0521320:intron 30.0%
! ATAGGCAATGTATTTTCTGT+TGG + chr3_4:73980683-73980702 Msa0521320:intron 30.0%
ATTCCATGGTTAAGAATGAT+AGG + chr3_4:73980884-73980903 Msa0521320:intron 30.0%
! TTTTCCACTTATCTAGACAT+AGG + chr3_4:73981276-73981295 Msa0521320:intron 30.0%
!!! CATTTAATCTGGTTTTACTC+TGG + chr3_4:73981313-73981332 Msa0521320:intron 30.0%
CTTTAAATATCTCCTCTAAC+TGG - chr3_4:73981405-73981424 None:intergenic 30.0%
TTGCTGTATAAATACAACTG+GGG - chr3_4:73981501-73981520 None:intergenic 30.0%
GATTGCTGTATAAATACAAC+TGG - chr3_4:73981503-73981522 None:intergenic 30.0%
!!! CATTTTGATTAGATCTGCAT+AGG - chr3_4:73981525-73981544 None:intergenic 30.0%
ATTGTAATTGCTCAAGAACT+TGG + chr3_4:73981560-73981579 Msa0521320:intron 30.0%
TTGTAATTGCTCAAGAACTT+GGG + chr3_4:73981561-73981580 Msa0521320:intron 30.0%
!! TAGAAAGTGATTCTAAAACC+TGG + chr3_4:73981680-73981699 Msa0521320:intron 30.0%
AACTTTGTTGAAAGAAAACC+AGG - chr3_4:73981701-73981720 None:intergenic 30.0%
! TGCTGTTTAAACTTGTCATT+AGG + chr3_4:73981736-73981755 Msa0521320:intron 30.0%
TGCTAACTCAAAAAAGTTCA+TGG - chr3_4:73981792-73981811 None:intergenic 30.0%
AATTGAAATCCTTGAGCATT+TGG + chr3_4:73981831-73981850 Msa0521320:intron 30.0%
CTTTCTCATCAAGACTTAAA+CGG - chr3_4:73981972-73981991 None:intergenic 30.0%
TTCAGTTGTTACACTAGATA+AGG - chr3_4:73982151-73982170 None:intergenic 30.0%
CTGAGATTATTTGACAATGA+AGG + chr3_4:73982458-73982477 Msa0521320:three_prime_UTR 30.0%
GTATGCAACACTTATCTATT+TGG + chr3_4:73982647-73982666 Msa0521320:three_prime_UTR 30.0%
! CCAAACATTCTCAAGAATTT+TGG - chr3_4:73982684-73982703 None:intergenic 30.0%
CCAAAATTCTTGAGAATGTT+TGG + chr3_4:73982681-73982700 Msa0521320:three_prime_UTR 30.0%
!! GGTTCCATTACATTTTGTTT+AGG + chr3_4:73982711-73982730 Msa0521320:three_prime_UTR 30.0%
TAAATTAGCTGTTTGTGTTG+TGG + chr3_4:73982767-73982786 Msa0521320:three_prime_UTR 30.0%
TGTAATACGACTAATCAGAA+TGG - chr3_4:73982796-73982815 None:intergenic 30.0%
ACAGAGTCACATTCTTTCTA+CGG - chr3_4:73978096-73978115 None:intergenic 35.0%
AGAAGAAACTTAACAGTGAG+AGG - chr3_4:73978259-73978278 None:intergenic 35.0%
TTGAATCTTTCGGATCTTGT+TGG + chr3_4:73978366-73978385 Msa0521320:five_prime_UTR 35.0%
TCAGGGGATAGTATAGTATA+CGG - chr3_4:73978580-73978599 None:intergenic 35.0%
TCATACCCTAAATGAAGTTG+AGG + chr3_4:73978637-73978656 Msa0521320:intron 35.0%
! TTCTATATAACTTGCAGCGT+TGG + chr3_4:73978668-73978687 Msa0521320:intron 35.0%
! TTTGGTGTAGTGTTTGTTCA+AGG - chr3_4:73978737-73978756 None:intergenic 35.0%
GAACAAACACTACACCAAAA+TGG + chr3_4:73978738-73978757 Msa0521320:CDS 35.0%
CTGTTTAATTCAGAACAGGA+TGG + chr3_4:73978777-73978796 Msa0521320:CDS 35.0%
AAACAAACTGCACTGTCTAA+TGG + chr3_4:73978837-73978856 Msa0521320:CDS 35.0%
! GGAGAAATCTAGGACAAAAA+AGG + chr3_4:73979055-73979074 Msa0521320:CDS 35.0%
!! ATATGAAGACTTCTAGGACT+TGG - chr3_4:73979110-73979129 None:intergenic 35.0%
GAAGTCATATGAAGACTTCT+AGG - chr3_4:73979116-73979135 None:intergenic 35.0%
AGAAAGAACAAAGACGGAAA+AGG + chr3_4:73979140-73979159 Msa0521320:CDS 35.0%
GTAGCATCTTCTGTTTCAAA+TGG + chr3_4:73979176-73979195 Msa0521320:CDS 35.0%
! TACATTTTCTTTCAGCACTC+TGG + chr3_4:73979413-73979432 Msa0521320:intron 35.0%
GGTTCTTTCTTTATTAAGCG+TGG - chr3_4:73979576-73979595 None:intergenic 35.0%
TTTCCTGGAAGATTATCAAG+GGG - chr3_4:73979597-73979616 None:intergenic 35.0%
! CTTTTCCTGGAAGATTATCA+AGG - chr3_4:73979599-73979618 None:intergenic 35.0%
ATGACCTACAATTAGCAGAA+GGG - chr3_4:73979859-73979878 None:intergenic 35.0%
TTATGCATATCTTATGGGAG+GGG + chr3_4:73980011-73980030 Msa0521320:intron 35.0%
ATTATTACTTGCTTCTCCCT+TGG + chr3_4:73980222-73980241 Msa0521320:intron 35.0%
TTATTCAAAGGAAACCCTCA+TGG - chr3_4:73980252-73980271 None:intergenic 35.0%
AGACCTACAAGCTTATTCAA+AGG - chr3_4:73980264-73980283 None:intergenic 35.0%
TTTACTCTAAGCTTGAGGAA+AGG + chr3_4:73980311-73980330 Msa0521320:CDS 35.0%
CAACATTCAAGCAAAAACCA+AGG + chr3_4:73980360-73980379 Msa0521320:CDS 35.0%
ATTAGACAGATTACACACAG+CGG - chr3_4:73980642-73980661 None:intergenic 35.0%
TTCCACTTCACTCTATCAAT+TGG + chr3_4:73980825-73980844 Msa0521320:intron 35.0%
!! GCTTGTTCTGAAATATTCCA+TGG + chr3_4:73980870-73980889 Msa0521320:intron 35.0%
AGACCTATCATTCTTAACCA+TGG - chr3_4:73980890-73980909 None:intergenic 35.0%
AGATGGATATCAATGAAAGC+GGG - chr3_4:73981111-73981130 None:intergenic 35.0%
CAGATGGATATCAATGAAAG+CGG - chr3_4:73981112-73981131 None:intergenic 35.0%
CCAAATTTAAAGGTTCCAGA+TGG - chr3_4:73981128-73981147 None:intergenic 35.0%
! CCATCTGGAACCTTTAAATT+TGG + chr3_4:73981125-73981144 Msa0521320:intron 35.0%
GTGGTAAAGTGCATTTAATC+TGG + chr3_4:73981302-73981321 Msa0521320:intron 35.0%
GCTCCCATAAAAATATCAAC+TGG - chr3_4:73981626-73981645 None:intergenic 35.0%
GATCTTCTTTGTGGTTTCTT+TGG - chr3_4:73982036-73982055 None:intergenic 35.0%
AGTTGTTACACTAGATAAGG+AGG - chr3_4:73982148-73982167 None:intergenic 35.0%
AATTGAGATTCTGCTACATC+TGG - chr3_4:73982288-73982307 None:intergenic 35.0%
GTAGCAGAATCTCAATTGAA+TGG + chr3_4:73982291-73982310 Msa0521320:CDS 35.0%
! AGACAAACCACAACTCATTT+TGG + chr3_4:73982329-73982348 Msa0521320:CDS 35.0%
TCTTGTACCAAAATGAGTTG+TGG - chr3_4:73982339-73982358 None:intergenic 35.0%
ACAAAAGATACAATGCTGCT+TGG - chr3_4:73982522-73982541 None:intergenic 35.0%
TACATATAATTGCTGCAAGG+AGG - chr3_4:73982586-73982605 None:intergenic 35.0%
ATGTTGCTATAGGATACAGT+AGG - chr3_4:73982875-73982894 None:intergenic 35.0%
ACATGTGGATATGTTGCTAT+AGG - chr3_4:73982885-73982904 None:intergenic 35.0%
TACTTATTTGATTGCCTGTG+TGG - chr3_4:73982909-73982928 None:intergenic 35.0%
AGAGTCACATTCTTTCTACG+GGG - chr3_4:73978094-73978113 None:intergenic 40.0%
CAGAGTCACATTCTTTCTAC+GGG - chr3_4:73978095-73978114 None:intergenic 40.0%
CAACTTCAAGGAAAGAAGGA+AGG + chr3_4:73978164-73978183 Msa0521320:five_prime_UTR 40.0%
AGTAGAGTACAGGAGAAAAC+GGG - chr3_4:73978193-73978212 None:intergenic 40.0%
GAGTAGAGTACAGGAGAAAA+CGG - chr3_4:73978194-73978213 None:intergenic 40.0%
AGTACAGTAGAGTAGAGTAC+AGG - chr3_4:73978203-73978222 None:intergenic 40.0%
ATCTTTCGGATCTTGTTGGT+CGG + chr3_4:73978370-73978389 Msa0521320:five_prime_UTR 40.0%
AGCAGAAGAAAACAAACCTG+AGG - chr3_4:73978469-73978488 None:intergenic 40.0%
GGATTCAGTTAACACTTCAC+TGG + chr3_4:73978701-73978720 Msa0521320:CDS 40.0%
AACACTTCACTGGAAGATGA+TGG + chr3_4:73978711-73978730 Msa0521320:CDS 40.0%
TCGGTGAGAAAGAACAAAGA+CGG + chr3_4:73979134-73979153 Msa0521320:CDS 40.0%
CCACACATCAAATAGTGAAG+AGG - chr3_4:73979519-73979538 None:intergenic 40.0%
CCTCTTCACTATTTGATGTG+TGG + chr3_4:73979516-73979535 Msa0521320:intron 40.0%
! GAAGATGATTCAGCTTTTCC+TGG - chr3_4:73979612-73979631 None:intergenic 40.0%
TAGCAGAAGGGTTCAAAATG+AGG - chr3_4:73979847-73979866 None:intergenic 40.0%
TGAACCCTTCTGCTAATTGT+AGG + chr3_4:73979852-73979871 Msa0521320:intron 40.0%
GATGACCTACAATTAGCAGA+AGG - chr3_4:73979860-73979879 None:intergenic 40.0%
AAACCCTCATGGTAATCCAA+GGG - chr3_4:73980241-73980260 None:intergenic 40.0%
CCTCAAGCTTAGAGTAAAAC+TGG - chr3_4:73980309-73980328 None:intergenic 40.0%
! CCAGTTTTACTCTAAGCTTG+AGG + chr3_4:73980306-73980325 Msa0521320:intron 40.0%
GGTCGAGATGTGGTTAAAAA+AGG - chr3_4:73980433-73980452 None:intergenic 40.0%
AGAAATCAAAGGTCGAGATG+TGG - chr3_4:73980443-73980462 None:intergenic 40.0%
AAGCTGAGATTAAGAGGCTT+AGG + chr3_4:73980481-73980500 Msa0521320:CDS 40.0%
TTAGACAGATTACACACAGC+GGG - chr3_4:73980641-73980660 None:intergenic 40.0%
CACCAATTGATAGAGTGAAG+TGG - chr3_4:73980830-73980849 None:intergenic 40.0%
CGCTTTCATTGATATCCATC+TGG + chr3_4:73981110-73981129 Msa0521320:intron 40.0%
!! TCGTGTCGGTTCTGAAATTT+AGG + chr3_4:73981173-73981192 Msa0521320:intron 40.0%
CACACCTATGTCTAGATAAG+TGG - chr3_4:73981283-73981302 None:intergenic 40.0%
CTTATCTAGACATAGGTGTG+TGG + chr3_4:73981283-73981302 Msa0521320:intron 40.0%
ATTCTGTTGTGAAGTTGACG+TGG - chr3_4:73981373-73981392 None:intergenic 40.0%
AATTGCTTAGCTCCAGTTAG+AGG + chr3_4:73981390-73981409 Msa0521320:intron 40.0%
TTCACAAGTCCAAATGCTCA+AGG - chr3_4:73981843-73981862 None:intergenic 40.0%
! GGAGATTTTGCTCTTGTAGT+TGG - chr3_4:73981874-73981893 None:intergenic 40.0%
TCTCAGAATAACCCCACTAA+AGG + chr3_4:73981994-73982013 Msa0521320:CDS 40.0%
ACAGGGCTAATTCCTTTAGT+GGG - chr3_4:73982009-73982028 None:intergenic 40.0%
AACAGGGCTAATTCCTTTAG+TGG - chr3_4:73982010-73982029 None:intergenic 40.0%
TTGGATGAACTGATCCTTTC+AGG - chr3_4:73982078-73982097 None:intergenic 40.0%
TTTCTCTTCCCTTGTTGCAA+TGG - chr3_4:73982187-73982206 None:intergenic 40.0%
GCTTAATGCTATCCTGCTAT+GGG - chr3_4:73982363-73982382 None:intergenic 40.0%
TGCTTAATGCTATCCTGCTA+TGG - chr3_4:73982364-73982383 None:intergenic 40.0%
GATAGCATTAAGCAAACAGC+AGG + chr3_4:73982370-73982389 Msa0521320:exon 40.0%
CAAACAGCAGGAACATAATC+TGG + chr3_4:73982382-73982401 Msa0521320:three_prime_UTR 40.0%
GACAAAAACCAGCAAGCTTT+GGG - chr3_4:73982552-73982571 None:intergenic 40.0%
! TAAGTGTTGCATACCTCAAC+TGG - chr3_4:73982641-73982660 None:intergenic 40.0%
TTGAGAATGTTTGGCATCAG+CGG + chr3_4:73982690-73982709 Msa0521320:three_prime_UTR 40.0%
GCATTGCTCTGTTAAACAGT+TGG + chr3_4:73982733-73982752 Msa0521320:three_prime_UTR 40.0%
TCACATTCTTTCTACGGGGT+GGG - chr3_4:73978090-73978109 None:intergenic 45.0%
TGACTCTGTGCGACTATTAG+TGG + chr3_4:73978107-73978126 Msa0521320:five_prime_UTR 45.0%
GAAAGCGACATGATCTGATC+TGG + chr3_4:73978129-73978148 Msa0521320:five_prime_UTR 45.0%
GTAGAGTACAGGAGAAAACG+GGG - chr3_4:73978192-73978211 None:intergenic 45.0%
TCGATAGAACCAAGTCAGTG+TGG - chr3_4:73978957-73978976 None:intergenic 45.0%
CAAAGACGGAAAAGGTGAAG+AGG + chr3_4:73979148-73979167 Msa0521320:CDS 45.0%
TCGAGGATGAGAGTCTAAAG+TGG - chr3_4:73979207-73979226 None:intergenic 45.0%
TTGACTGCCCTGTTCTTAAC+CGG - chr3_4:73979233-73979252 None:intergenic 45.0%
! GAACCCCTTGATAATCTTCC+AGG + chr3_4:73979591-73979610 Msa0521320:CDS 45.0%
CTTACTTGTGAGTGGAAACC+AGG + chr3_4:73979660-73979679 Msa0521320:intron 45.0%
ATAAAGAAATCGCCCTGTCC+TGG - chr3_4:73979681-73979700 None:intergenic 45.0%
AGGGTTCAAAATGAGGCATG+AGG - chr3_4:73979840-73979859 None:intergenic 45.0%
GGTTTGGCATCTTCTGATGT+AGG - chr3_4:73980122-73980141 None:intergenic 45.0%
ATGCCAAACCTCGTAGAGTT+GGG + chr3_4:73980132-73980151 Msa0521320:CDS 45.0%
GTTGGGACAATGCCAACTTA+TGG + chr3_4:73980149-73980168 Msa0521320:CDS 45.0%
TTCTCCCTTGGATTACCATG+AGG + chr3_4:73980234-73980253 Msa0521320:intron 45.0%
TCTCCCTTGGATTACCATGA+GGG + chr3_4:73980235-73980254 Msa0521320:intron 45.0%
GAAACCCTCATGGTAATCCA+AGG - chr3_4:73980242-73980261 None:intergenic 45.0%
TGAGGAAAGGATTCATGCGA+AGG + chr3_4:73980324-73980343 Msa0521320:CDS 45.0%
AAGGATTCATGCGAAGGAAG+TGG + chr3_4:73980330-73980349 Msa0521320:CDS 45.0%
TTCTTCAACTCCACCCTAGA+AGG - chr3_4:73980561-73980580 None:intergenic 45.0%
!! TTCTAGGGTGGAGTTGAAGA+AGG + chr3_4:73980560-73980579 Msa0521320:CDS 45.0%
TTGTATGCAATCAGGCAGAC+AGG - chr3_4:73980616-73980635 None:intergenic 45.0%
ATTGCCCAAGTCAAGCATGT+AGG - chr3_4:73980747-73980766 None:intergenic 45.0%
TGTGAAGTTGACGTGGCATT+TGG - chr3_4:73981366-73981385 None:intergenic 45.0%
AGAGCAAAATCTCCCAAGCT+TGG + chr3_4:73981880-73981899 Msa0521320:CDS 45.0%
CTCTTCTTACGACCAAGCTT+GGG - chr3_4:73981895-73981914 None:intergenic 45.0%
ACTCTTCTTACGACCAAGCT+TGG - chr3_4:73981896-73981915 None:intergenic 45.0%
CAGGGCTAATTCCTTTAGTG+GGG - chr3_4:73982008-73982027 None:intergenic 45.0%
GTGGTTTCTTTGGCTGAACA+GGG - chr3_4:73982026-73982045 None:intergenic 45.0%
TGTGGTTTCTTTGGCTGAAC+AGG - chr3_4:73982027-73982046 None:intergenic 45.0%
CATCCAATTCAGCAACTGCA+CGG + chr3_4:73982091-73982110 Msa0521320:CDS 45.0%
AACTGCACGGACTTCATCTA+AGG + chr3_4:73982104-73982123 Msa0521320:CDS 45.0%
CACCTTGTCCATTGCAACAA+GGG + chr3_4:73982176-73982195 Msa0521320:CDS 45.0%
TTCCCTTGTTGCAATGGACA+AGG - chr3_4:73982181-73982200 None:intergenic 45.0%
TCCACTTGTCTCATCAGACA+AGG - chr3_4:73982244-73982263 None:intergenic 45.0%
!! TCTGGCTCTATGTTCTGAGA+TGG - chr3_4:73982270-73982289 None:intergenic 45.0%
TTGGTACAAGAACCCATAGC+AGG + chr3_4:73982348-73982367 Msa0521320:CDS 45.0%
TGTTTACTCCCAAAGCTTGC+TGG + chr3_4:73982541-73982560 Msa0521320:three_prime_UTR 45.0%
GGACAAAAACCAGCAAGCTT+TGG - chr3_4:73982553-73982572 None:intergenic 45.0%
CTGCAAGGAGGAGAATCATA+AGG - chr3_4:73982574-73982593 None:intergenic 45.0%
! TTGTCAGGTTGTTCCAGTTG+AGG + chr3_4:73982625-73982644 Msa0521320:three_prime_UTR 45.0%
CATATCCACATGTTCCACAC+AGG + chr3_4:73982892-73982911 Msa0521320:three_prime_UTR 45.0%
!! TTTAAATAAATAAAAAATCA+GGG - chr3_4:73978313-73978332 None:intergenic 5.0%
!! ATTTAAATAAATAAAAAATC+AGG - chr3_4:73978314-73978333 None:intergenic 5.0%
!! AAATGTAAAAAAAAAAATAA+AGG - chr3_4:73979400-73979419 None:intergenic 5.0%
GTCACATTCTTTCTACGGGG+TGG - chr3_4:73978091-73978110 None:intergenic 50.0%
TTCGGATCTTGTTGGTCGGT+CGG + chr3_4:73978374-73978393 Msa0521320:five_prime_UTR 50.0%
!! TGCAGCGTTGGTGTAAACGA+TGG + chr3_4:73978680-73978699 Msa0521320:intron 50.0%
! GAATCCTCTCCACACTGACT+TGG + chr3_4:73978945-73978964 Msa0521320:intron 50.0%
AGAACCAAGTCAGTGTGGAG+AGG - chr3_4:73978952-73978971 None:intergenic 50.0%
TCGACAGCCGGTTAAGAACA+GGG + chr3_4:73979223-73979242 Msa0521320:CDS 50.0%
TTGTGAGTGGAAACCAGGAC+AGG + chr3_4:73979665-73979684 Msa0521320:intron 50.0%
TGTGAGTGGAAACCAGGACA+GGG + chr3_4:73979666-73979685 Msa0521320:intron 50.0%
GATGCCAAACCTCGTAGAGT+TGG + chr3_4:73980131-73980150 Msa0521320:CDS 50.0%
TGTCCCAACTCTACGAGGTT+TGG - chr3_4:73980138-73980157 None:intergenic 50.0%
GCGAGCTGAGAGAAGAAAAG+AGG + chr3_4:73980193-73980212 Msa0521320:CDS 50.0%
GATTCATGCGAAGGAAGTGG+AGG + chr3_4:73980333-73980352 Msa0521320:CDS 50.0%
GCCAGGAAGCTGAGATTAAG+AGG + chr3_4:73980475-73980494 Msa0521320:CDS 50.0%
GCCTCTTAATCTCAGCTTCC+TGG - chr3_4:73980479-73980498 None:intergenic 50.0%
TCCAATGCCAAGCTTCTACC+AGG + chr3_4:73980527-73980546 Msa0521320:CDS 50.0%
TCCTGGTAGAAGCTTGGCAT+TGG - chr3_4:73980531-73980550 None:intergenic 50.0%
AACTCCACCCTAGAAGGAGT+AGG - chr3_4:73980555-73980574 None:intergenic 50.0%
AGGGTGGAGTTGAAGAAGGT+TGG + chr3_4:73980564-73980583 Msa0521320:intron 50.0%
! AGCGGGCTTTGTATGCAATC+AGG - chr3_4:73980624-73980643 None:intergenic 50.0%
GCATGCACATCTGTGCACTT+GGG - chr3_4:73980719-73980738 None:intergenic 50.0%
TGCATGCACATCTGTGCACT+TGG - chr3_4:73980720-73980739 None:intergenic 50.0%
ACGCACCTACATGCTTGACT+TGG + chr3_4:73980739-73980758 Msa0521320:intron 50.0%
CGCACCTACATGCTTGACTT+GGG + chr3_4:73980740-73980759 Msa0521320:intron 50.0%
! GTGACTTGTACACGTCGTGT+CGG + chr3_4:73981159-73981178 Msa0521320:intron 50.0%
GTTGACGTGGCATTTGGATG+AGG - chr3_4:73981360-73981379 None:intergenic 50.0%
GGAGGGAGAGATCTTCTTTG+TGG - chr3_4:73982045-73982064 None:intergenic 50.0%
TTTCAGGAGTCAGTCGAGGA+GGG - chr3_4:73982062-73982081 None:intergenic 50.0%
ATCCTTTCAGGAGTCAGTCG+AGG - chr3_4:73982066-73982085 None:intergenic 50.0%
AGTCCGTGCAGTTGCTGAAT+TGG - chr3_4:73982097-73982116 None:intergenic 50.0%
TGCACGGACTTCATCTAAGG+CGG + chr3_4:73982107-73982126 Msa0521320:CDS 50.0%
CCTTGTTGCAATGGACAAGG+TGG - chr3_4:73982178-73982197 None:intergenic 50.0%
CCACCTTGTCCATTGCAACA+AGG + chr3_4:73982175-73982194 Msa0521320:CDS 50.0%
TGAAGCAGCTGCAGCTATTG+AGG + chr3_4:73982209-73982228 Msa0521320:CDS 50.0%
GCCTTGTCTGATGAGACAAG+TGG + chr3_4:73982240-73982259 Msa0521320:CDS 50.0%
GATTGCCTGTGTGGAACATG+TGG - chr3_4:73982900-73982919 None:intergenic 50.0%
TTCTACGGGGTGGGTGATGA+TGG - chr3_4:73978081-73978100 None:intergenic 55.0%
CAGCAGCAGCAGCAACATAG+TGG - chr3_4:73978416-73978435 None:intergenic 55.0%
CGGAAAAGGTGAAGAGGCTG+CGG + chr3_4:73979154-73979173 Msa0521320:CDS 55.0%
AGACTCTCATCCTCGACAGC+CGG + chr3_4:73979211-73979230 Msa0521320:CDS 55.0%
CTGTTCTTAACCGGCTGTCG+AGG - chr3_4:73979224-73979243 None:intergenic 55.0%
CTCGACAGCCGGTTAAGAAC+AGG + chr3_4:73979222-73979241 Msa0521320:CDS 55.0%
!! CAAGCTGACTCGACTGTCCA+AGG + chr3_4:73979256-73979275 Msa0521320:CDS 55.0%
GGCATTGTCCCAACTCTACG+AGG - chr3_4:73980143-73980162 None:intergenic 55.0%
GTAGGCTCCTGGTAGAAGCT+TGG - chr3_4:73980537-73980556 None:intergenic 55.0%
ACCAGGAGCCTACTCCTTCT+AGG + chr3_4:73980544-73980563 Msa0521320:CDS 55.0%
CCAGGAGCCTACTCCTTCTA+GGG + chr3_4:73980545-73980564 Msa0521320:CDS 55.0%
CTTTCAGGAGTCAGTCGAGG+AGG - chr3_4:73982063-73982082 None:intergenic 55.0%
! CTCCTCGACTGACTCCTGAA+AGG + chr3_4:73982061-73982080 Msa0521320:CDS 55.0%
CCCTAGAAGGAGTAGGCTCC+TGG - chr3_4:73980548-73980567 None:intergenic 60.0%
! GGAGCCTACTCCTTCTAGGG+TGG + chr3_4:73980548-73980567 Msa0521320:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73978077 73982944 73978077 ID=Msa0521320;Name=Msa0521320
chr3_4 mRNA 73978077 73982944 73978077 ID=Msa0521320-mRNA-1;Parent=Msa0521320;Name=Msa0521320-mRNA-1;_AED=0.20;_eAED=0.20;_QI=409|1|1|1|0.87|0.77|9|570|463
chr3_4 exon 73978077 73978471 73978077 ID=Msa0521320-mRNA-1:exon:20873;Parent=Msa0521320-mRNA-1
chr3_4 exon 73978685 73978938 73978685 ID=Msa0521320-mRNA-1:exon:20874;Parent=Msa0521320-mRNA-1
chr3_4 exon 73979026 73979277 73979026 ID=Msa0521320-mRNA-1:exon:20875;Parent=Msa0521320-mRNA-1
chr3_4 exon 73979428 73979468 73979428 ID=Msa0521320-mRNA-1:exon:20876;Parent=Msa0521320-mRNA-1
chr3_4 exon 73979560 73979631 73979560 ID=Msa0521320-mRNA-1:exon:20877;Parent=Msa0521320-mRNA-1
chr3_4 exon 73980118 73980214 73980118 ID=Msa0521320-mRNA-1:exon:20878;Parent=Msa0521320-mRNA-1
chr3_4 exon 73980310 73980381 73980310 ID=Msa0521320-mRNA-1:exon:20879;Parent=Msa0521320-mRNA-1
chr3_4 exon 73980471 73980581 73980471 ID=Msa0521320-mRNA-1:exon:20880;Parent=Msa0521320-mRNA-1
chr3_4 exon 73981868 73982944 73981868 ID=Msa0521320-mRNA-1:exon:20881;Parent=Msa0521320-mRNA-1
chr3_4 five_prime_UTR 73978077 73978471 73978077 ID=Msa0521320-mRNA-1:five_prime_utr;Parent=Msa0521320-mRNA-1
chr3_4 five_prime_UTR 73978685 73978698 73978685 ID=Msa0521320-mRNA-1:five_prime_utr;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73978699 73978938 73978699 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73979026 73979277 73979026 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73979428 73979468 73979428 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73979560 73979631 73979560 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73980118 73980214 73980118 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73980310 73980381 73980310 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73980471 73980581 73980471 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 CDS 73981868 73982374 73981868 ID=Msa0521320-mRNA-1:cds;Parent=Msa0521320-mRNA-1
chr3_4 three_prime_UTR 73982375 73982944 73982375 ID=Msa0521320-mRNA-1:three_prime_utr;Parent=Msa0521320-mRNA-1
Gene Sequence

>Msa0521320

ATGGATTCAGTTAACACTTCACTGGAAGATGATGGCCTTGAACAAACACTACACCAAAATGGTGTTCATAAACAACAACTGTTTAATTCAGAACAGGATGGCGTTGATTCAAATGTAGACTCTGTTATTACTCAAATTAAACAAACTGCACTGTCTAATGGAAATATCAATGATAATTTGTCTATGGAAGAACAAGGATTAAATGGCAAAATAGAGGGAAACAATGTTAATGTTTTCAAGGATGAGGAAGTTGAAATCGTTGATGAAATGGAGAAATCTAGGACAAAAAAGGATCTTGTCAAGAATAAGAATTCAAAATTGCCAAGTCCTAGAAGTCTTCATATGACTTCGGTGAGAAAGAACAAAGACGGAAAAGGTGAAGAGGCTGCGGTAGCATCTTCTGTTTCAAATGGTACTTCCACTTTAGACTCTCATCCTCGACAGCCGGTTAAGAACAGGGCAGTCAATGACAAGCTGACTCGACTGTCCAAGCACTCTGGAAAGACTGATGCTGCATCTACTGAAGCACCAATGGAGAAGACTAGACCACGCTTAATAAAGAAAGAACCCCTTGATAATCTTCCAGGAAAAGCTGAATCATCTTCTCCTACATCAGAAGATGCCAAACCTCGTAGAGTTGGGACAATGCCAACTTATGGATTCAGTTTCAAATGTAATGAGCGAGCTGAGAGAAGAAAAGAGTTTTACTCTAAGCTTGAGGAAAGGATTCATGCGAAGGAAGTGGAGGAGAGCAACATTCAAGCAAAAACCAAGGAAAGCCAGGAAGCTGAGATTAAGAGGCTTAGGAAAAAACTAGCATTTAAAGCAACTCCAATGCCAAGCTTCTACCAGGAGCCTACTCCTTCTAGGGTGGAGTTGAAGAAGATACCAACTACAAGAGCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTTCAACAACGTCTTCAGAGCTAGATGTAAACACTAACAGCAGTGCTCAACAATGCCGTTTAAGTCTTGATGAGAAAGTGTCTCAGAATAACCCCACTAAAGGAATTAGCCCTGTTCAGCCAAAGAAACCACAAAGAAGATCTCTCCCTCCTCGACTGACTCCTGAAAGGATCAGTTCATCCAATTCAGCAACTGCACGGACTTCATCTAAGGCGGTGAATGACGAGAAAACCTCCTTATCTAGTGTAACAACTGAAGTTACCACCTTGTCCATTGCAACAAGGGAAGAGAAAGTTGAAGCAGCTGCAGCTATTGAGGAGAGCAATGCCTTGTCTGATGAGACAAGTGGAACTCCATCTCAGAACATAGAGCCAGATGTAGCAGAATCTCAATTGAATGGTGATATAGTGATTGAAGACAAACCACAACTCATTTTGGTACAAGAACCCATAGCAGGATAG

Protein sequence

>Msa0521320

MDSVNTSLEDDGLEQTLHQNGVHKQQLFNSEQDGVDSNVDSVITQIKQTALSNGNINDNLSMEEQGLNGKIEGNNVNVFKDEEVEIVDEMEKSRTKKDLVKNKNSKLPSPRSLHMTSVRKNKDGKGEEAAVASSVSNGTSTLDSHPRQPVKNRAVNDKLTRLSKHSGKTDAASTEAPMEKTRPRLIKKEPLDNLPGKAESSSPTSEDAKPRRVGTMPTYGFSFKCNERAERRKEFYSKLEERIHAKEVEESNIQAKTKESQEAEIKRLRKKLAFKATPMPSFYQEPTPSRVELKKIPTTRAKSPKLGRKKSSTTSSELDVNTNSSAQQCRLSLDEKVSQNNPTKGISPVQPKKPQRRSLPPRLTPERISSSNSATARTSSKAVNDEKTSLSSVTTEVTTLSIATREEKVEAAAAIEESNALSDETSGTPSQNIEPDVAESQLNGDIVIEDKPQLILVQEPIAG*