Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789850 | XP_003591995.1 | 96.352 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 0.0 | 941 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789850 | sp|Q40863|EMB8_PICGL | 35.417 | 384 | 222 | 7 | 49 | 417 | 49 | 421 | 3.20e-61 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789850 | G7IAG0 | 96.352 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0789850 | Msa1450600 | 0.858501 | 7.887903e-63 | -8.615850e-47 |
| Msa0131350 | Msa0789850 | 0.861618 | 9.039360e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789850 | MtrunA17_Chr1g0200381 | 96.352 | 466 | 17 | 0 | 1 | 466 | 1 | 466 | 0.0 | 941 |
| Msa0789850 | MtrunA17_Chr1g0200391 | 77.556 | 450 | 95 | 1 | 12 | 461 | 19 | 462 | 0.0 | 736 |
| Msa0789850 | MtrunA17_Chr4g0021061 | 38.562 | 306 | 173 | 4 | 95 | 397 | 96 | 389 | 4.52e-62 | 208 |
| Msa0789850 | MtrunA17_Chr4g0070031 | 27.600 | 250 | 165 | 3 | 110 | 356 | 142 | 378 | 2.33e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789850 | AT1G34340.1 | 63.124 | 461 | 167 | 1 | 2 | 459 | 3 | 463 | 0.0 | 608 |
| Msa0789850 | AT5G49950.1 | 58.352 | 449 | 177 | 4 | 12 | 459 | 14 | 453 | 0.0 | 517 |
| Msa0789850 | AT3G50790.2 | 36.137 | 321 | 188 | 5 | 95 | 410 | 76 | 384 | 5.42e-58 | 197 |
| Msa0789850 | AT3G50790.1 | 36.137 | 321 | 188 | 5 | 95 | 410 | 76 | 384 | 5.42e-58 | 197 |
| Msa0789850 | AT2G03140.12 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 9.18e-26 | 112 |
| Msa0789850 | AT2G03140.2 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.05e-25 | 111 |
| Msa0789850 | AT2G03140.3 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.8 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.10 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.9 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.5 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.7 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.1 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.4 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.12e-25 | 111 |
| Msa0789850 | AT2G03140.6 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.62e-24 | 108 |
Find 126 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTACTCGCCTTGCTAAT+TGG | 0.159411 | 5_3:-489384 | Msa0789850:CDS |
| CCTATTGTTATTTGTATTCC+TGG | 0.169023 | 5_3:-492476 | Msa0789850:CDS |
| TTCTATTTAAAATATGTTAT+TGG | 0.173716 | 5_3:-487790 | Msa0789850:three_prime_UTR |
| TCTGATTGTTTCTACAATTC+TGG | 0.179820 | 5_3:-491302 | Msa0789850:CDS |
| TCCAAAGAAGTTGAGGAAAA+TGG | 0.218440 | 5_3:+492912 | None:intergenic |
| TTGATGTCAAAAGATGTTAT+TGG | 0.222802 | 5_3:-487754 | Msa0789850:three_prime_UTR |
| GTTCCATGGAAATTAGAATT+TGG | 0.229305 | 5_3:+493220 | None:intergenic |
| TCTTCAGTTACATTGATATA+AGG | 0.256685 | 5_3:+488051 | None:intergenic |
| TAAAATTCTTTAGGAGAATC+TGG | 0.271561 | 5_3:+487928 | None:intergenic |
| TTGCTCTCCATGGGACCTTT+TGG | 0.281889 | 5_3:-490075 | Msa0789850:intron |
| CTCTACACCAAACACATTAT+TGG | 0.282651 | 5_3:-488094 | Msa0789850:CDS |
| AAACGACGGTGTCGTAGATT+TGG | 0.288333 | 5_3:+493001 | None:intergenic |
| AGTATTACATGTATTTCTTT+TGG | 0.297872 | 5_3:+487986 | None:intergenic |
| GACTTTCTCTGATTCCAATA+TGG | 0.306643 | 5_3:-493152 | Msa0789850:CDS |
| GTCAGTAATCACCGAGGATT+TGG | 0.307193 | 5_3:-491567 | Msa0789850:CDS |
| TGATGCTAATAAAATTCTTT+AGG | 0.310815 | 5_3:+487919 | None:intergenic |
| TGATGGTGGAACCCTTGCTT+TGG | 0.342571 | 5_3:-492692 | Msa0789850:CDS |
| GGTCATCTGGCTTTCTTTGA+AGG | 0.342583 | 5_3:-488555 | Msa0789850:CDS |
| AATTCTAATTTCCATGGAAC+TGG | 0.357094 | 5_3:-493217 | Msa0789850:exon |
| ATTTACTCGCCTTGCTAATT+GGG | 0.364057 | 5_3:-489383 | Msa0789850:CDS |
| TGAATAAGTCTTGGATGAAA+TGG | 0.366261 | 5_3:+493070 | None:intergenic |
| CTTCAGTTACATTGATATAA+GGG | 0.367631 | 5_3:+488052 | None:intergenic |
| AAGGCGCCTTTGTTTATTGT+TGG | 0.376066 | 5_3:-491227 | Msa0789850:CDS |
| AACGACGGTGTCGTAGATTT+GGG | 0.383118 | 5_3:+493002 | None:intergenic |
| CTGTAGCTGTTTGCTCTCCA+TGG | 0.384760 | 5_3:-490085 | Msa0789850:CDS |
| AGAGCTACTAATGAATTTCT+TGG | 0.395824 | 5_3:-488306 | Msa0789850:CDS |
| AAAAGAAATACATGTAATAC+TGG | 0.398530 | 5_3:-487984 | Msa0789850:exon |
| AACAATAAACAAAGGCGCCT+TGG | 0.406898 | 5_3:+491229 | None:intergenic |
| GAATATCCGCCTTGAAGAAT+CGG | 0.410833 | 5_3:+492970 | None:intergenic |
| GTGAGGAGGTAATGCCATAT+TGG | 0.413036 | 5_3:+493138 | None:intergenic |
| TTTAAAACATGGAGGTCATC+TGG | 0.416368 | 5_3:-488568 | Msa0789850:CDS |
| CTTGGATGAAATGGATTTCA+AGG | 0.423576 | 5_3:+493079 | None:intergenic |
| GCAGGATAACTAACCGTGAT+TGG | 0.426392 | 5_3:+491537 | None:intergenic |
| TATATCAATGTAACTGAAGA+TGG | 0.429045 | 5_3:-488048 | Msa0789850:CDS |
| ACAATAAACAAAGGCGCCTT+GGG | 0.429506 | 5_3:+491230 | None:intergenic |
| TGTTTGCAGGTAAAATATCT+TGG | 0.431469 | 5_3:-490140 | Msa0789850:intron |
| GCTTCTCTGTATTAGTGCTC+TGG | 0.434351 | 5_3:-488756 | Msa0789850:CDS |
| CCAGGAATACAAATAACAAT+AGG | 0.434889 | 5_3:+492476 | None:intergenic |
| ATCATGCCACCCGCATGGTT+GGG | 0.442530 | 5_3:-488942 | Msa0789850:CDS |
| TTCATCCCAGGGAATGGCTT+CGG | 0.453042 | 5_3:+488715 | None:intergenic |
| TTCATCCAAGACTTATTCAC+TGG | 0.455099 | 5_3:-493066 | Msa0789850:CDS |
| GGATAACTGCATCTAGCCTT+TGG | 0.463957 | 5_3:-488533 | Msa0789850:intron |
| CTCCATCTTTCAAATACAAA+AGG | 0.467859 | 5_3:-492885 | Msa0789850:intron |
| GACGCTTCATCAACTTCAAA+CGG | 0.469164 | 5_3:-493195 | Msa0789850:CDS |
| AGCCTACTTGCATTCATCCC+AGG | 0.469700 | 5_3:+488703 | None:intergenic |
| AATCCAAATTCTAATTTCCA+TGG | 0.469773 | 5_3:-493223 | Msa0789850:exon |
| GATCATGCCACCCGCATGGT+TGG | 0.470851 | 5_3:-488943 | Msa0789850:CDS |
| TCAAAGTGTCCGATTCTTCA+AGG | 0.472302 | 5_3:-492979 | Msa0789850:CDS |
| AGGAAAATGGTTTGAAGATG+AGG | 0.476049 | 5_3:+492925 | None:intergenic |
| GACGAGTCCAATAATGTGTT+TGG | 0.477090 | 5_3:+488087 | None:intergenic |
| GAGTTGTAACTGAACTGAAC+GGG | 0.481580 | 5_3:+493030 | None:intergenic |
| GTGGAACCCTTGCTTTGGAC+TGG | 0.482761 | 5_3:-492687 | Msa0789850:CDS |
| TTTATTGTTGGCACAAGTAT+CGG | 0.485344 | 5_3:-491215 | Msa0789850:CDS |
| CAATTATTTACTACTTCTGA+TGG | 0.485455 | 5_3:-492709 | Msa0789850:CDS |
| GTAAAATATCTTGGTGAGGA+TGG | 0.494269 | 5_3:-490131 | Msa0789850:CDS |
| TACTTACGTGCAATCTGTAT+CGG | 0.494891 | 5_3:-488783 | Msa0789850:CDS |
| AAGTATCGGAGCTAATATTC+TGG | 0.498735 | 5_3:-491201 | Msa0789850:intron |
| TTGAACGACGAGCCAACAAC+AGG | 0.498890 | 5_3:-488012 | Msa0789850:CDS |
| CTTGCATTCATCCCAGGGAA+TGG | 0.502258 | 5_3:+488709 | None:intergenic |
| TTGGACTCGTCAATTGATCA+AGG | 0.502387 | 5_3:-488075 | Msa0789850:CDS |
| GTACCACCGAAGCCATTCCC+TGG | 0.506706 | 5_3:-488721 | Msa0789850:CDS |
| CGTTATGATACATTGGCACT+AGG | 0.507668 | 5_3:-487850 | Msa0789850:three_prime_UTR |
| ATCATACAGCAAAGCGTGGA+TGG | 0.507999 | 5_3:-491599 | Msa0789850:CDS |
| TACACTGTGTTCTGTTGAAG+TGG | 0.512947 | 5_3:+493245 | None:intergenic |
| ACAGCTACAGCTCCAGCTAC+AGG | 0.515335 | 5_3:+490098 | None:intergenic |
| GTCATCTGGCTTTCTTTGAA+GGG | 0.517450 | 5_3:-488554 | Msa0789850:CDS |
| TGTAGCTGTTTGCTCTCCAT+GGG | 0.521893 | 5_3:-490084 | Msa0789850:CDS |
| GGTGAAAATACTCCTGTAGC+TGG | 0.527326 | 5_3:-490110 | Msa0789850:CDS |
| ATGGCTTCGGTGGTACAGAC+AGG | 0.528211 | 5_3:+488728 | None:intergenic |
| ATTGTTTCTACAATTCTGGA+TGG | 0.529663 | 5_3:-491298 | Msa0789850:CDS |
| GAATCAGAGAAAGTCCTTTG+AGG | 0.530297 | 5_3:+493160 | None:intergenic |
| ACTCGCCTTGCTAATTGGGA+AGG | 0.533476 | 5_3:-489379 | Msa0789850:CDS |
| TGATGAAGCGTCCAGTTCCA+TGG | 0.535507 | 5_3:+493206 | None:intergenic |
| TTATATGCATGAACAAAAGA+AGG | 0.538820 | 5_3:-488265 | Msa0789850:intron |
| AATGGTTTGAAGATGAGGAC+TGG | 0.540210 | 5_3:+492930 | None:intergenic |
| GAGCATTTCCAAAGAAGTTG+AGG | 0.547086 | 5_3:+492905 | None:intergenic |
| ATTTGGAGGTGTTCCAATCA+CGG | 0.548433 | 5_3:-491550 | Msa0789850:intron |
| TTATTTACTACTTCTGATGG+TGG | 0.549292 | 5_3:-492706 | Msa0789850:CDS |
| CTCATACTTCCCAACCATGC+GGG | 0.550717 | 5_3:+488933 | None:intergenic |
| CCGCATGGTTGGGAAGTATG+AGG | 0.551051 | 5_3:-488932 | Msa0789850:intron |
| CTATTCCTTCCCAATTAGCA+AGG | 0.554281 | 5_3:+489374 | None:intergenic |
| GACTGGATAACAAGTTCTGA+TGG | 0.559300 | 5_3:-492670 | Msa0789850:intron |
| TGAATCCAGTGAATAAGTCT+TGG | 0.562530 | 5_3:+493061 | None:intergenic |
| TTGTTATCCAGTCCAAAGCA+AGG | 0.568743 | 5_3:+492680 | None:intergenic |
| AGTAATCACCGAGGATTTGG+AGG | 0.570968 | 5_3:-491564 | Msa0789850:CDS |
| GCCTACTTGCATTCATCCCA+GGG | 0.576549 | 5_3:+488704 | None:intergenic |
| TTACTAACCAAAAGGTCCCA+TGG | 0.579056 | 5_3:+490068 | None:intergenic |
| TAGCAACAACATTATCGTCA+TGG | 0.582836 | 5_3:+492513 | None:intergenic |
| CAATGTAACTGAAGATGGAA+TGG | 0.584166 | 5_3:-488043 | Msa0789850:CDS |
| GGTTACTTGTTCATCCTCAA+AGG | 0.584179 | 5_3:-493174 | Msa0789850:CDS |
| ACTGGAAAGCCATGGTGTAA+CGG | 0.586849 | 5_3:+492948 | None:intergenic |
| TACCACCGAAGCCATTCCCT+GGG | 0.588284 | 5_3:-488720 | Msa0789850:CDS |
| GTGTTAGCTACTTTAAAACA+TGG | 0.590159 | 5_3:-488579 | Msa0789850:CDS |
| TGACGATCATGCCACCCGCA+TGG | 0.590304 | 5_3:-488947 | Msa0789850:CDS |
| CAAGGCGAGTAAATTGAGGC+TGG | 0.594294 | 5_3:+489392 | None:intergenic |
| TATAATAAAGCACTGGCAGG+TGG | 0.596101 | 5_3:-489589 | Msa0789850:CDS |
| ATATTGCCGTTATGATACAT+TGG | 0.599580 | 5_3:-487857 | Msa0789850:three_prime_UTR |
| TTGGAACACCTCCAAATCCT+CGG | 0.607876 | 5_3:+491556 | None:intergenic |
| ATCCCAGGGAATGGCTTCGG+TGG | 0.609768 | 5_3:+488718 | None:intergenic |
| TAATTGGGAAGGAATAGAAA+AGG | 0.611433 | 5_3:-489368 | Msa0789850:intron |
| TTAGCAAGGCGAGTAAATTG+AGG | 0.613735 | 5_3:+489388 | None:intergenic |
| AGAGTTGTAACTGAACTGAA+CGG | 0.619759 | 5_3:+493029 | None:intergenic |
| TGTTATCCAGTCCAAAGCAA+GGG | 0.621323 | 5_3:+492681 | None:intergenic |
| CTACAATTCTGGATGGACTG+AGG | 0.627761 | 5_3:-491291 | Msa0789850:CDS |
| GAAGAGTAGCAAAAGTGAGG+AGG | 0.629834 | 5_3:+493124 | None:intergenic |
| ACAGCATTAGCATCATGAAG+TGG | 0.630878 | 5_3:-487952 | Msa0789850:three_prime_UTR |
| GCAGGTAAAATATCTTGGTG+AGG | 0.631080 | 5_3:-490135 | Msa0789850:intron |
| GCGCCTTGGGATTCTCTCTG+TGG | 0.635002 | 5_3:+491243 | None:intergenic |
| GGTTATCTCGACAAAATCGA+TGG | 0.641806 | 5_3:-487892 | Msa0789850:three_prime_UTR |
| CTAGTGCCAATGTATCATAA+CGG | 0.642028 | 5_3:+487851 | None:intergenic |
| ATACTTCCCAACCATGCGGG+TGG | 0.645678 | 5_3:+488936 | None:intergenic |
| TGAGAAGAGTAGCAAAAGTG+AGG | 0.646619 | 5_3:+493121 | None:intergenic |
| GCGGATATTCCGTTACACCA+TGG | 0.661428 | 5_3:-492957 | Msa0789850:CDS |
| CCTCATACTTCCCAACCATG+CGG | 0.669193 | 5_3:+488932 | None:intergenic |
| AGAGCACTAATACAGAGAAG+CGG | 0.669736 | 5_3:+488758 | None:intergenic |
| GCATATCATACAGCAAAGCG+TGG | 0.679163 | 5_3:-491603 | Msa0789850:CDS |
| GACTGAGGATACTCGCACAG+TGG | 0.682605 | 5_3:-491276 | Msa0789850:CDS |
| AATCGGACACTTTGAAACGA+CGG | 0.687644 | 5_3:+492987 | None:intergenic |
| CTTGTGCCAACAATAAACAA+AGG | 0.691706 | 5_3:+491221 | None:intergenic |
| GAAGAATCACTTGTTAAACC+AGG | 0.692103 | 5_3:+492458 | None:intergenic |
| TGTAACTGAAGATGGAATGG+TGG | 0.707476 | 5_3:-488040 | Msa0789850:CDS |
| TTAGCTACTTTAAAACATGG+AGG | 0.710037 | 5_3:-488576 | Msa0789850:CDS |
| AGATGAGGACTGGAAAGCCA+TGG | 0.717732 | 5_3:+492940 | None:intergenic |
| TCTCCACAGAGAGAATCCCA+AGG | 0.738420 | 5_3:-491246 | Msa0789850:CDS |
| AAGTGTCCGATTCTTCAAGG+CGG | 0.747552 | 5_3:-492976 | Msa0789850:CDS |
| GTTGTTGTCAGTAATCACCG+AGG | 0.777365 | 5_3:-491573 | Msa0789850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTAAATTAAATTATAG+TGG | - | chr5_3:489290-489309 | Msa0789850:intron | 10.0% |
| !! | AAAAAATAACAAAACAAATA+GGG | - | chr5_3:490379-490398 | Msa0789850:intron | 10.0% |
| !!! | TTCTATTTAAAATATGTTAT+TGG | - | chr5_3:493196-493215 | Msa0789850:CDS | 10.0% |
| !! | ATTAAATCTTAGTAGTTTAT+TGG | - | chr5_3:488241-488260 | Msa0789850:intron | 15.0% |
| !!! | TTATTAAAACATTGATTCAA+AGG | + | chr5_3:488704-488723 | None:intergenic | 15.0% |
| !! | TAATAAACGTGTTATAATAA+GGG | + | chr5_3:489237-489256 | None:intergenic | 15.0% |
| !! | TTAATAAACGTGTTATAATA+AGG | + | chr5_3:489238-489257 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTGTATTAATTT+TGG | - | chr5_3:490154-490173 | Msa0789850:intron | 15.0% |
| !! | GAAAAAATAACAAAACAAAT+AGG | - | chr5_3:490378-490397 | Msa0789850:intron | 15.0% |
| !! | AAAAATTTAAGCATTAACAT+AGG | + | chr5_3:490660-490679 | None:intergenic | 15.0% |
| !! | AATCTATTTGATATAATCTA+TGG | - | chr5_3:491220-491239 | Msa0789850:CDS | 15.0% |
| !! | TAAAAAAAATAGAAAGATAG+AGG | + | chr5_3:491449-491468 | None:intergenic | 15.0% |
| !!! | ATATTAAATGTAATTAGTCT+AGG | - | chr5_3:491784-491803 | Msa0789850:intron | 15.0% |
| !! | ATACGAGAAAAATTTAATAT+CGG | + | chr5_3:492094-492113 | None:intergenic | 15.0% |
| !!! | TTTCATTTGTTTTATAATAG+CGG | + | chr5_3:492630-492649 | None:intergenic | 15.0% |
| !! | TTTAAGTATTTAGTGCTAAA+AGG | - | chr5_3:489095-489114 | Msa0789850:intron | 20.0% |
| !! | AAGTATATCTTAATCTAAAG+TGG | + | chr5_3:489564-489583 | None:intergenic | 20.0% |
| !! | TTAAGAATTTACATTACTAG+AGG | + | chr5_3:489650-489669 | None:intergenic | 20.0% |
| !! | TGTATGTGATTGTATTTATA+TGG | + | chr5_3:489924-489943 | None:intergenic | 20.0% |
| !!! | TACTTGAATGTTTTTTTTCA+TGG | - | chr5_3:490029-490048 | Msa0789850:intron | 20.0% |
| !! | TTAAAACACACTACTTTATT+TGG | + | chr5_3:490597-490616 | None:intergenic | 20.0% |
| !! | AATACTATTTACTAACCAAA+AGG | + | chr5_3:490929-490948 | None:intergenic | 20.0% |
| !! | TTATGTACATTAGTAAATGT+CGG | + | chr5_3:490995-491014 | None:intergenic | 20.0% |
| !! | CTTTCCTTCTAATTTAAATT+GGG | + | chr5_3:491064-491083 | None:intergenic | 20.0% |
| !!! | TTATTATAAAACTTTTGCAC+AGG | + | chr5_3:491385-491404 | None:intergenic | 20.0% |
| !!! | AAAGTTTTATAATAAAGCAC+TGG | - | chr5_3:491390-491409 | Msa0789850:intron | 20.0% |
| !!! | TTTTTTTTACTCATCTTTCT+AGG | - | chr5_3:491460-491479 | Msa0789850:intron | 20.0% |
| !! | AAAAATGAATTGCAACTATT+TGG | + | chr5_3:491852-491871 | None:intergenic | 20.0% |
| !! | TACGAGAAAAATTTAATATC+GGG | + | chr5_3:492093-492112 | None:intergenic | 20.0% |
| !! | AAAGAGTAACACATTAAAAT+GGG | + | chr5_3:492365-492384 | None:intergenic | 20.0% |
| !! | AAAAGAGTAACACATTAAAA+TGG | + | chr5_3:492366-492385 | None:intergenic | 20.0% |
| !! | GAATATATTATAACCAATCA+AGG | + | chr5_3:492596-492615 | None:intergenic | 20.0% |
| !!! | AGTATTACATGTATTTCTTT+TGG | + | chr5_3:493003-493022 | None:intergenic | 20.0% |
| !! | AAAAGAAATACATGTAATAC+TGG | - | chr5_3:493002-493021 | Msa0789850:CDS | 20.0% |
| !! | TGATGCTAATAAAATTCTTT+AGG | + | chr5_3:493070-493089 | None:intergenic | 20.0% |
| !!! | AGAAATGAATTTTATTAGAG+AGG | + | chr5_3:493180-493199 | None:intergenic | 20.0% |
| !!! | AAGTGGTTTTGAATTTTGAT+AGG | + | chr5_3:487727-487746 | None:intergenic | 25.0% |
| ! | AATCCAAATTCTAATTTCCA+TGG | - | chr5_3:487763-487782 | Msa0789850:three_prime_UTR | 25.0% |
| ! | AGAATGAAAATGTGAAATGA+CGG | + | chr5_3:488133-488152 | None:intergenic | 25.0% |
| ! | CAATTATTTACTACTTCTGA+TGG | - | chr5_3:488277-488296 | Msa0789850:CDS | 25.0% |
| ! | ATGATACACAAAAATCTGAA+AGG | + | chr5_3:488424-488443 | None:intergenic | 25.0% |
| ! | CATTATTATGTTACAGTTTC+TGG | - | chr5_3:488441-488460 | Msa0789850:intron | 25.0% |
| !! | CAAATAAACAAAAGCATGAT+AGG | + | chr5_3:488570-488589 | None:intergenic | 25.0% |
| ! | AGTCAATTAACTTCTAACTT+GGG | + | chr5_3:488664-488683 | None:intergenic | 25.0% |
| ! | TTATTTGAATAGTTTGGTTG+CGG | + | chr5_3:488801-488820 | None:intergenic | 25.0% |
| ! | GTTTGGTTATTTGAATAGTT+TGG | + | chr5_3:488807-488826 | None:intergenic | 25.0% |
| !!! | TCATTAAAACGTTGATTCAA+AGG | + | chr5_3:488897-488916 | None:intergenic | 25.0% |
| !!! | TTCACTTCTTTTTGTTGATT+AGG | - | chr5_3:489268-489287 | Msa0789850:intron | 25.0% |
| !! | TCTATATATTTCTAACTTGC+AGG | + | chr5_3:489470-489489 | None:intergenic | 25.0% |
| !! | TAAGATATACTTCCTTTTGT+TGG | - | chr5_3:489572-489591 | Msa0789850:CDS | 25.0% |
| ! | GTATTTATATGGAAACTTCT+AGG | + | chr5_3:489913-489932 | None:intergenic | 25.0% |
| !! | TTGAAAACAGTTTTTGATCA+AGG | + | chr5_3:490105-490124 | None:intergenic | 25.0% |
| ! | AATACAAACATACATGAACA+AGG | + | chr5_3:490149-490168 | None:intergenic | 25.0% |
| !! | TTTCCATATTTTCTTCATGT+GGG | + | chr5_3:490362-490381 | None:intergenic | 25.0% |
| !! | TTTTCCATATTTTCTTCATG+TGG | + | chr5_3:490363-490382 | None:intergenic | 25.0% |
| !!! | ACACAGTTTTGGATTAATTA+TGG | + | chr5_3:490411-490430 | None:intergenic | 25.0% |
| ! | TTAACATAGGAGTTATACTT+CGG | + | chr5_3:490647-490666 | None:intergenic | 25.0% |
| ! | TTTACTTATGTTATGACCAT+TGG | - | chr5_3:490684-490703 | Msa0789850:intron | 25.0% |
| ! | GTAGTTTGAAAAGCAAATAT+AGG | + | chr5_3:490721-490740 | None:intergenic | 25.0% |
| ! | CCTTTCCTTCTAATTTAAAT+TGG | + | chr5_3:491065-491084 | None:intergenic | 25.0% |
| ! | CCAATTTAAATTAGAAGGAA+AGG | - | chr5_3:491062-491081 | Msa0789850:intron | 25.0% |
| ! | TATAAAATACCAGAATGAAG+AGG | + | chr5_3:491758-491777 | None:intergenic | 25.0% |
| !!! | TGCAATTCATTTTTATTCGT+TGG | - | chr5_3:491858-491877 | Msa0789850:intron | 25.0% |
| !!! | AGAATAAGTCTTGTGTTTTA+AGG | + | chr5_3:491897-491916 | None:intergenic | 25.0% |
| !!! | TATTTTAGATAGCAGACATA+AGG | + | chr5_3:492133-492152 | None:intergenic | 25.0% |
| ! | TAACAAAATATTGAAGAGTC+AGG | + | chr5_3:492499-492518 | None:intergenic | 25.0% |
| !! | TCTTTTGTTCATGCATATAA+TGG | + | chr5_3:492721-492740 | None:intergenic | 25.0% |
| ! | TTATATGCATGAACAAAAGA+AGG | - | chr5_3:492721-492740 | Msa0789850:intron | 25.0% |
| ! | CTTAATAAGCTTATTGACAA+AGG | - | chr5_3:492767-492786 | Msa0789850:intron | 25.0% |
| !! | ACTACTGTTTTCTCTATTAA+CGG | - | chr5_3:492853-492872 | Msa0789850:intron | 25.0% |
| ! | CTTCAGTTACATTGATATAA+GGG | + | chr5_3:492937-492956 | None:intergenic | 25.0% |
| ! | TCTTCAGTTACATTGATATA+AGG | + | chr5_3:492938-492957 | None:intergenic | 25.0% |
| ! | TATATCAATGTAACTGAAGA+TGG | - | chr5_3:492938-492957 | Msa0789850:CDS | 25.0% |
| !! | TAAAATTCTTTAGGAGAATC+TGG | + | chr5_3:493061-493080 | None:intergenic | 25.0% |
| !! | AATTTTATTAGAGAGGAAAG+AGG | + | chr5_3:493173-493192 | None:intergenic | 25.0% |
| ! | TTGATGTCAAAAGATGTTAT+TGG | - | chr5_3:493232-493251 | Msa0789850:five_prime_UTR | 25.0% |
| GTTCCATGGAAATTAGAATT+TGG | + | chr5_3:487769-487788 | None:intergenic | 30.0% | |
| AATTCTAATTTCCATGGAAC+TGG | - | chr5_3:487769-487788 | Msa0789850:three_prime_UTR | 30.0% | |
| TGAATAAGTCTTGGATGAAA+TGG | + | chr5_3:487919-487938 | None:intergenic | 30.0% | |
| CTCCATCTTTCAAATACAAA+AGG | - | chr5_3:488101-488120 | Msa0789850:intron | 30.0% | |
| ! | GACCTTTTGTATTTGAAAGA+TGG | + | chr5_3:488106-488125 | None:intergenic | 30.0% |
| GATGCATATACAACAAGAAA+AGG | + | chr5_3:488159-488178 | None:intergenic | 30.0% | |
| TTATTTACTACTTCTGATGG+TGG | - | chr5_3:488280-488299 | Msa0789850:CDS | 30.0% | |
| CCAGGAATACAAATAACAAT+AGG | + | chr5_3:488513-488532 | None:intergenic | 30.0% | |
| !! | CCTATTGTTATTTGTATTCC+TGG | - | chr5_3:488510-488529 | Msa0789850:intron | 30.0% |
| !! | CATGCTTTTGTTTATTTGTG+TGG | - | chr5_3:488572-488591 | Msa0789850:CDS | 30.0% |
| CAGTCAATTAACTTCTAACT+TGG | + | chr5_3:488665-488684 | None:intergenic | 30.0% | |
| TTAGAAGTTAATTGACTGCT+AGG | - | chr5_3:488667-488686 | Msa0789850:intron | 30.0% | |
| ! | TTGAGTTGTAGTATTGTCAA+CGG | + | chr5_3:488987-489006 | None:intergenic | 30.0% |
| AAAAATCGAACTGAACCAAA+CGG | + | chr5_3:489051-489070 | None:intergenic | 30.0% | |
| CGTTAACAAAACAAGTCTAT+CGG | - | chr5_3:489135-489154 | Msa0789850:intron | 30.0% | |
| TCGTTAATCGTTCATTTGTA+AGG | - | chr5_3:489170-489189 | Msa0789850:intron | 30.0% | |
| ! | GTGTTATAATAAGGGTACAA+GGG | + | chr5_3:489229-489248 | None:intergenic | 30.0% |
| !! | AATTAAATTATAGTGGGCAG+TGG | - | chr5_3:489297-489316 | Msa0789850:intron | 30.0% |
| ! | TTTGAGATACTACAACGAAA+GGG | + | chr5_3:489357-489376 | None:intergenic | 30.0% |
| TGCAATCTTCAAATAACCAT+TGG | - | chr5_3:489512-489531 | Msa0789850:intron | 30.0% | |
| !!! | TCATAACGTTTTTTAGCCAA+TGG | + | chr5_3:489531-489550 | None:intergenic | 30.0% |
| ATTGGCTAAAAAACGTTATG+AGG | - | chr5_3:489530-489549 | Msa0789850:intron | 30.0% | |
| TAAAAAACGTTATGAGGTTG+TGG | - | chr5_3:489536-489555 | Msa0789850:intron | 30.0% | |
| !! | TCTGATTGTTTCTACAATTC+TGG | - | chr5_3:489684-489703 | Msa0789850:intron | 30.0% |
| !! | ATTGTTTCTACAATTCTGGA+TGG | - | chr5_3:489688-489707 | Msa0789850:intron | 30.0% |
| TTTATTGTTGGCACAAGTAT+CGG | - | chr5_3:489771-489790 | Msa0789850:intron | 30.0% | |
| CTAATATTCTGGTAAATTCG+TGG | - | chr5_3:489796-489815 | Msa0789850:intron | 30.0% | |
| TTCTAGGTTTAGACTATTTG+AGG | + | chr5_3:489897-489916 | None:intergenic | 30.0% | |
| AACACTGTAATTAAATCAGC+TGG | + | chr5_3:489973-489992 | None:intergenic | 30.0% | |
| ! | AGCTGATTTAATTACAGTGT+TGG | - | chr5_3:489972-489991 | Msa0789850:intron | 30.0% |
| ! | GCTGATTTAATTACAGTGTT+GGG | - | chr5_3:489973-489992 | Msa0789850:intron | 30.0% |
| TTGATCAAGGATTATGCATA+CGG | + | chr5_3:490092-490111 | None:intergenic | 30.0% | |
| TTCTCTAGATAGTCATTACA+AGG | + | chr5_3:490273-490292 | None:intergenic | 30.0% | |
| ! | TCATCAAAAACACACAGTTT+TGG | + | chr5_3:490422-490441 | None:intergenic | 30.0% |
| !!! | TCCAACACATTTTTTGTTGT+TGG | - | chr5_3:490477-490496 | Msa0789850:intron | 30.0% |
| !!! | CCAACACATTTTTTGTTGTT+GGG | - | chr5_3:490478-490497 | Msa0789850:intron | 30.0% |
| ! | GATCCCATAACTTTAGAAAT+GGG | - | chr5_3:490514-490533 | Msa0789850:intron | 30.0% |
| !! | GAACCCATTTCTAAAGTTAT+GGG | + | chr5_3:490520-490539 | None:intergenic | 30.0% |
| ATGGATCTCATCTTCTATTT+GGG | + | chr5_3:490544-490563 | None:intergenic | 30.0% | |
| TATGGATCTCATCTTCTATT+TGG | + | chr5_3:490545-490564 | None:intergenic | 30.0% | |
| AATAGAAGATGAGATCCATA+TGG | - | chr5_3:490545-490564 | Msa0789850:intron | 30.0% | |
| !! | TGATTTTGAAGATTGTTTGC+AGG | - | chr5_3:490833-490852 | Msa0789850:intron | 30.0% |
| TGTTTGCAGGTAAAATATCT+TGG | - | chr5_3:490846-490865 | Msa0789850:intron | 30.0% | |
| TTCAGATGAAAGATAGATTG+TGG | + | chr5_3:491035-491054 | None:intergenic | 30.0% | |
| TGTGCCCAATTTAAATTAGA+AGG | - | chr5_3:491057-491076 | Msa0789850:intron | 30.0% | |
| TTTAAATTAGAAGGAAAGGC+AGG | - | chr5_3:491066-491085 | Msa0789850:intron | 30.0% | |
| TTGGAATCGTATGAACATAA+TGG | - | chr5_3:491114-491133 | Msa0789850:intron | 30.0% | |
| TGTATAATGTTTGCAGATAG+CGG | - | chr5_3:491339-491358 | Msa0789850:intron | 30.0% | |
| !!! | TTTTATAATAAAGCACTGGC+AGG | - | chr5_3:491394-491413 | Msa0789850:intron | 30.0% |
| !!! | GATTTTTCATGTTAGTCTTC+AGG | + | chr5_3:491516-491535 | None:intergenic | 30.0% |
| TAATTGGGAAGGAATAGAAA+AGG | - | chr5_3:491618-491637 | Msa0789850:CDS | 30.0% | |
| TTCATTATTCCTCTTCATTC+TGG | - | chr5_3:491746-491765 | Msa0789850:intron | 30.0% | |
| !!! | AAGATGCATGTTGATTTTAG+AGG | - | chr5_3:491826-491845 | Msa0789850:intron | 30.0% |
| AATAGTACCACAATCTCAAA+TGG | - | chr5_3:491917-491936 | Msa0789850:intron | 30.0% | |
| ACTTCACCAAATCAAAAACA+CGG | + | chr5_3:491954-491973 | None:intergenic | 30.0% | |
| AGTGCATATGTATTCTTTGT+AGG | - | chr5_3:491997-492016 | Msa0789850:intron | 30.0% | |
| AGTAATGCAACAGAAATAGA+AGG | + | chr5_3:492336-492355 | None:intergenic | 30.0% | |
| !! | TAATGTGTTACTCTTTTGAC+AGG | - | chr5_3:492369-492388 | Msa0789850:intron | 30.0% |
| !! | AATGTGTTACTCTTTTGACA+GGG | - | chr5_3:492370-492389 | Msa0789850:intron | 30.0% |
| !! | GTGTTAGCTACTTTAAAACA+TGG | - | chr5_3:492407-492426 | Msa0789850:intron | 30.0% |
| !! | TTAGCTACTTTAAAACATGG+AGG | - | chr5_3:492410-492429 | Msa0789850:intron | 30.0% |
| AGAGCTACTAATGAATTTCT+TGG | - | chr5_3:492680-492699 | Msa0789850:CDS | 30.0% | |
| ATAGAGAAAACAGTAGTTTC+AGG | + | chr5_3:492850-492869 | None:intergenic | 30.0% | |
| ! | GAATTTTATTAGCATCATGC+TGG | - | chr5_3:493073-493092 | Msa0789850:CDS | 30.0% |
| ATATTGCCGTTATGATACAT+TGG | - | chr5_3:493129-493148 | Msa0789850:CDS | 30.0% | |
| GACTTTCTCTGATTCCAATA+TGG | - | chr5_3:487834-487853 | Msa0789850:three_prime_UTR | 35.0% | |
| ! | CTTGGATGAAATGGATTTCA+AGG | + | chr5_3:487910-487929 | None:intergenic | 35.0% |
| TTCATCCAAGACTTATTCAC+TGG | - | chr5_3:487920-487939 | Msa0789850:three_prime_UTR | 35.0% | |
| TGAATCCAGTGAATAAGTCT+TGG | + | chr5_3:487928-487947 | None:intergenic | 35.0% | |
| AGAGTTGTAACTGAACTGAA+CGG | + | chr5_3:487960-487979 | None:intergenic | 35.0% | |
| AGGAAAATGGTTTGAAGATG+AGG | + | chr5_3:488064-488083 | None:intergenic | 35.0% | |
| ! | ACCATTTTCCTCAACTTCTT+TGG | - | chr5_3:488073-488092 | Msa0789850:CDS | 35.0% |
| TCCAAAGAAGTTGAGGAAAA+TGG | + | chr5_3:488077-488096 | None:intergenic | 35.0% | |
| AAAATCTGAAAGGTCAACGA+AGG | + | chr5_3:488414-488433 | None:intergenic | 35.0% | |
| TAGCAACAACATTATCGTCA+TGG | + | chr5_3:488476-488495 | None:intergenic | 35.0% | |
| ! | GAAGAATCACTTGTTAAACC+AGG | + | chr5_3:488531-488550 | None:intergenic | 35.0% |
| AGCATGATAGGATAACTTAC+AGG | + | chr5_3:488558-488577 | None:intergenic | 35.0% | |
| ! | TTTTCCCAATTCCGAATACA+GGG | + | chr5_3:488628-488647 | None:intergenic | 35.0% |
| AAGTTAATTGACTGCTAGGT+CGG | - | chr5_3:488671-488690 | Msa0789850:intron | 35.0% | |
| AATCGAACAATGCATTGAAC+CGG | - | chr5_3:488722-488741 | Msa0789850:CDS | 35.0% | |
| ACAATTGAACTATGACCTAG+AGG | + | chr5_3:488753-488772 | None:intergenic | 35.0% | |
| !! | AAACGTTGATTTACTCCAAC+AGG | - | chr5_3:488866-488885 | Msa0789850:intron | 35.0% |
| AAACAATGCATTGAACCAGT+AGG | - | chr5_3:488919-488938 | Msa0789850:intron | 35.0% | |
| TTGTAGTATTGTCAACGGTT+CGG | + | chr5_3:488982-489001 | None:intergenic | 35.0% | |
| ! | CGTGTTATAATAAGGGTACA+AGG | + | chr5_3:489230-489249 | None:intergenic | 35.0% |
| ! | GTTTGAGATACTACAACGAA+AGG | + | chr5_3:489358-489377 | None:intergenic | 35.0% |
| ! | CTTCCTTTTGTTGGAATTGT+AGG | - | chr5_3:489581-489600 | Msa0789850:CDS | 35.0% |
| AAGCCTACAATTCCAACAAA+AGG | + | chr5_3:489587-489606 | None:intergenic | 35.0% | |
| CTTGTGCCAACAATAAACAA+AGG | + | chr5_3:489768-489787 | None:intergenic | 35.0% | |
| !! | AAGTATCGGAGCTAATATTC+TGG | - | chr5_3:489785-489804 | Msa0789850:intron | 35.0% |
| ATACAGATCAATGTGGTGAA+GGG | + | chr5_3:490006-490025 | None:intergenic | 35.0% | |
| AGTAGAGATACAGATCAATG+TGG | + | chr5_3:490013-490032 | None:intergenic | 35.0% | |
| GATTATGCATACGGAAAACA+TGG | + | chr5_3:490083-490102 | None:intergenic | 35.0% | |
| ! | ATTTTCTTCATGTGGGAACA+TGG | + | chr5_3:490355-490374 | None:intergenic | 35.0% |
| GTTCCCACATGAAGAAAATA+TGG | - | chr5_3:490356-490375 | Msa0789850:intron | 35.0% | |
| CCCAACAACAAAAAATGTGT+TGG | + | chr5_3:490481-490500 | None:intergenic | 35.0% | |
| ! | GGATCCCATAACTTTAGAAA+TGG | - | chr5_3:490513-490532 | Msa0789850:intron | 35.0% |
| !! | GGAACCCATTTCTAAAGTTA+TGG | + | chr5_3:490521-490540 | None:intergenic | 35.0% |
| TGGATCTCATCTTCTATTTG+GGG | + | chr5_3:490543-490562 | None:intergenic | 35.0% | |
| GCAGATTTCACTAAACCATA+TGG | + | chr5_3:490563-490582 | None:intergenic | 35.0% | |
| TATGTTATGACCATTGGCAT+TGG | - | chr5_3:490690-490709 | Msa0789850:intron | 35.0% | |
| AACAAATGTGCAATTTCCAG+TGG | + | chr5_3:490748-490767 | None:intergenic | 35.0% | |
| AGTCACATATTCAAAGAGCT+TGG | - | chr5_3:490786-490805 | Msa0789850:intron | 35.0% | |
| TATTCAAAGAGCTTGGCAAT+TGG | - | chr5_3:490793-490812 | Msa0789850:intron | 35.0% | |
| GTAAAATATCTTGGTGAGGA+TGG | - | chr5_3:490855-490874 | Msa0789850:intron | 35.0% | |
| ATAGCTAGTATGCTATAAGC+TGG | + | chr5_3:491172-491191 | None:intergenic | 35.0% | |
| GCTATCTGCAAACATTATAC+AGG | + | chr5_3:491340-491359 | None:intergenic | 35.0% | |
| AGTCTTCAGGTGATAATAGA+TGG | + | chr5_3:491503-491522 | None:intergenic | 35.0% | |
| AATTTACTCGCCTTGCTAAT+TGG | - | chr5_3:491602-491621 | Msa0789850:CDS | 35.0% | |
| ATTTACTCGCCTTGCTAATT+GGG | - | chr5_3:491603-491622 | Msa0789850:CDS | 35.0% | |
| GTCAAGAATTTGAAAGCCTT+CGG | + | chr5_3:491724-491743 | None:intergenic | 35.0% | |
| ! | AGTCTAGGACATTGTTTAAG+TGG | - | chr5_3:491799-491818 | Msa0789850:intron | 35.0% |
| ! | TTCTCGTATCATCTCTTTTC+TGG | - | chr5_3:492105-492124 | Msa0789850:intron | 35.0% |
| TACTTACGTGCAATCTGTAT+CGG | - | chr5_3:492203-492222 | Msa0789850:intron | 35.0% | |
| ! | TTTAAAACATGGAGGTCATC+TGG | - | chr5_3:492418-492437 | Msa0789850:intron | 35.0% |
| CATCGATATCATTCCTTGAT+TGG | - | chr5_3:492580-492599 | Msa0789850:intron | 35.0% | |
| TATAATAGCGGCTGCTTAAT+TGG | + | chr5_3:492618-492637 | None:intergenic | 35.0% | |
| CTCTACACCAAACACATTAT+TGG | - | chr5_3:492892-492911 | Msa0789850:CDS | 35.0% | |
| CAATGTAACTGAAGATGGAA+TGG | - | chr5_3:492943-492962 | Msa0789850:CDS | 35.0% | |
| CTAGTGCCAATGTATCATAA+CGG | + | chr5_3:493138-493157 | None:intergenic | 35.0% | |
| TACACTGTGTTCTGTTGAAG+TGG | + | chr5_3:487744-487763 | None:intergenic | 40.0% | |
| GACGCTTCATCAACTTCAAA+CGG | - | chr5_3:487791-487810 | Msa0789850:three_prime_UTR | 40.0% | |
| GGTTACTTGTTCATCCTCAA+AGG | - | chr5_3:487812-487831 | Msa0789850:three_prime_UTR | 40.0% | |
| GAATCAGAGAAAGTCCTTTG+AGG | + | chr5_3:487829-487848 | None:intergenic | 40.0% | |
| TGAGAAGAGTAGCAAAAGTG+AGG | + | chr5_3:487868-487887 | None:intergenic | 40.0% | |
| GAGTTGTAACTGAACTGAAC+GGG | + | chr5_3:487959-487978 | None:intergenic | 40.0% | |
| !! | AATCGGACACTTTGAAACGA+CGG | + | chr5_3:488002-488021 | None:intergenic | 40.0% |
| ! | TCAAAGTGTCCGATTCTTCA+AGG | - | chr5_3:488007-488026 | Msa0789850:CDS | 40.0% |
| GAATATCCGCCTTGAAGAAT+CGG | + | chr5_3:488019-488038 | None:intergenic | 40.0% | |
| AATGGTTTGAAGATGAGGAC+TGG | + | chr5_3:488059-488078 | None:intergenic | 40.0% | |
| GAGCATTTCCAAAGAAGTTG+AGG | + | chr5_3:488084-488103 | None:intergenic | 40.0% | |
| TGTTATCCAGTCCAAAGCAA+GGG | + | chr5_3:488308-488327 | None:intergenic | 40.0% | |
| TTGTTATCCAGTCCAAAGCA+AGG | + | chr5_3:488309-488328 | None:intergenic | 40.0% | |
| ! | GACTGGATAACAAGTTCTGA+TGG | - | chr5_3:488316-488335 | Msa0789850:CDS | 40.0% |
| ! | GTTTTCCCAATTCCGAATAC+AGG | + | chr5_3:488629-488648 | None:intergenic | 40.0% |
| CTAACTTGGGCATAACTACA+TGG | + | chr5_3:488651-488670 | None:intergenic | 40.0% | |
| AGTTAATTGACTGCTAGGTC+GGG | - | chr5_3:488672-488691 | Msa0789850:intron | 40.0% | |
| AACCAAACCGTTGACAATAC+TGG | - | chr5_3:488819-488838 | Msa0789850:CDS | 40.0% | |
| AACCAGTATTGTCAACGGTT+TGG | + | chr5_3:488824-488843 | None:intergenic | 40.0% | |
| ACAGTTGAACTATGACCTAG+AGG | + | chr5_3:488946-488965 | None:intergenic | 40.0% | |
| ACTGAACCGTTCAATTCAAC+CGG | - | chr5_3:489020-489039 | Msa0789850:intron | 40.0% | |
| TCTAGCATATTTGACGACGT+CGG | + | chr5_3:489202-489221 | None:intergenic | 40.0% | |
| !! | ATTTGGAGGTGTTCCAATCA+CGG | - | chr5_3:489436-489455 | Msa0789850:intron | 40.0% |
| !! | ACAATAAACAAAGGCGCCTT+GGG | + | chr5_3:489759-489778 | None:intergenic | 40.0% |
| !! | AACAATAAACAAAGGCGCCT+TGG | + | chr5_3:489760-489779 | None:intergenic | 40.0% |
| ! | AAGGCGCCTTTGTTTATTGT+TGG | - | chr5_3:489759-489778 | Msa0789850:intron | 40.0% |
| GATACAGATCAATGTGGTGA+AGG | + | chr5_3:490007-490026 | None:intergenic | 40.0% | |
| ATAATCCTTAAAGCGAGCAG+AGG | + | chr5_3:490242-490261 | None:intergenic | 40.0% | |
| TGCTTTCCCTCTGACAAATT+GGG | + | chr5_3:490298-490317 | None:intergenic | 40.0% | |
| TTGCTTTCCCTCTGACAAAT+TGG | + | chr5_3:490299-490318 | None:intergenic | 40.0% | |
| GGATCTCATCTTCTATTTGG+GGG | + | chr5_3:490542-490561 | None:intergenic | 40.0% | |
| ATAGGATGAACCAATGCCAA+TGG | + | chr5_3:490703-490722 | None:intergenic | 40.0% | |
| ! | TTTTCAAACTACAGCACCAC+TGG | - | chr5_3:490729-490748 | Msa0789850:intron | 40.0% |
| GCAGGTAAAATATCTTGGTG+AGG | - | chr5_3:490851-490870 | Msa0789850:intron | 40.0% | |
| TTACTAACCAAAAGGTCCCA+TGG | + | chr5_3:490921-490940 | None:intergenic | 40.0% | |
| GCAGGCATATATGGAAATGT+TGG | - | chr5_3:491084-491103 | Msa0789850:intron | 40.0% | |
| TGGAAATGTTGGAGAACGTT+TGG | - | chr5_3:491095-491114 | Msa0789850:intron | 40.0% | |
| ! | GCATACTAGCTATGTGCTTT+TGG | - | chr5_3:491179-491198 | Msa0789850:intron | 40.0% |
| ! | AAAACTTTTGCACAGGAGCA+CGG | + | chr5_3:491378-491397 | None:intergenic | 40.0% |
| !! | TATAATAAAGCACTGGCAGG+TGG | - | chr5_3:491397-491416 | Msa0789850:intron | 40.0% |
| TTAGCAAGGCGAGTAAATTG+AGG | + | chr5_3:491601-491620 | None:intergenic | 40.0% | |
| CTATTCCTTCCCAATTAGCA+AGG | + | chr5_3:491615-491634 | None:intergenic | 40.0% | |
| TTGGGAAGGAATAGAAAAGG+TGG | - | chr5_3:491621-491640 | Msa0789850:CDS | 40.0% | |
| GTATGACCAATATTCACCGA+AGG | - | chr5_3:491705-491724 | Msa0789850:intron | 40.0% | |
| TGAAAGCCTTCGGTGAATAT+TGG | + | chr5_3:491714-491733 | None:intergenic | 40.0% | |
| !! | GCTGTTCCGTGTTTTTGATT+TGG | - | chr5_3:491945-491964 | Msa0789850:intron | 40.0% |
| ! | AGAGCACTAATACAGAGAAG+CGG | + | chr5_3:492231-492250 | None:intergenic | 40.0% |
| !! | GTCATCTGGCTTTCTTTGAA+GGG | - | chr5_3:492432-492451 | Msa0789850:intron | 40.0% |
| CAAAACGAGTCAAGTACCAA+AGG | + | chr5_3:492472-492491 | None:intergenic | 40.0% | |
| ATGATTTACTTGCCTGTTGC+AGG | - | chr5_3:492651-492670 | Msa0789850:intron | 40.0% | |
| TAGTGCACCAAGATAGTACA+GGG | + | chr5_3:492809-492828 | None:intergenic | 40.0% | |
| TTAGTGCACCAAGATAGTAC+AGG | + | chr5_3:492810-492829 | None:intergenic | 40.0% | |
| ! | TACTATCTTGGTGCACTAAG+TGG | - | chr5_3:492811-492830 | Msa0789850:intron | 40.0% |
| GACGAGTCCAATAATGTGTT+TGG | + | chr5_3:492902-492921 | None:intergenic | 40.0% | |
| TTGGACTCGTCAATTGATCA+AGG | - | chr5_3:492911-492930 | Msa0789850:CDS | 40.0% | |
| TGTAACTGAAGATGGAATGG+TGG | - | chr5_3:492946-492965 | Msa0789850:CDS | 40.0% | |
| !! | TTCTTTTGGTTGCCTGTTGT+TGG | + | chr5_3:492989-493008 | None:intergenic | 40.0% |
| ACAGCATTAGCATCATGAAG+TGG | - | chr5_3:493034-493053 | Msa0789850:CDS | 40.0% | |
| GGTTATCTCGACAAAATCGA+TGG | - | chr5_3:493094-493113 | Msa0789850:CDS | 40.0% | |
| CGTTATGATACATTGGCACT+AGG | - | chr5_3:493136-493155 | Msa0789850:CDS | 40.0% | |
| GTGAGGAGGTAATGCCATAT+TGG | + | chr5_3:487851-487870 | None:intergenic | 45.0% | |
| GAAGAGTAGCAAAAGTGAGG+AGG | + | chr5_3:487865-487884 | None:intergenic | 45.0% | |
| !! | AACGACGGTGTCGTAGATTT+GGG | + | chr5_3:487987-488006 | None:intergenic | 45.0% |
| !! | AAACGACGGTGTCGTAGATT+TGG | + | chr5_3:487988-488007 | None:intergenic | 45.0% |
| AAGTGTCCGATTCTTCAAGG+CGG | - | chr5_3:488010-488029 | Msa0789850:CDS | 45.0% | |
| ACTGGAAAGCCATGGTGTAA+CGG | + | chr5_3:488041-488060 | None:intergenic | 45.0% | |
| TGTCTCTCTCTCCCTGTATT+CGG | - | chr5_3:488614-488633 | Msa0789850:intron | 45.0% | |
| TCTCTCCCTGTATTCGGAAT+TGG | - | chr5_3:488620-488639 | Msa0789850:intron | 45.0% | |
| CTCTCCCTGTATTCGGAATT+GGG | - | chr5_3:488621-488640 | Msa0789850:intron | 45.0% | |
| GTTAATTGACTGCTAGGTCG+GGG | - | chr5_3:488673-488692 | Msa0789850:intron | 45.0% | |
| CCGTGAACCAGTATTGTCAA+CGG | + | chr5_3:488829-488848 | None:intergenic | 45.0% | |
| !! | CCGTTGACAATACTGGTTCA+CGG | - | chr5_3:488826-488845 | Msa0789850:intron | 45.0% |
| !! | ATACTGGTTCACGGCTCAAT+AGG | - | chr5_3:488835-488854 | Msa0789850:intron | 45.0% |
| TTGATTTACTCCAACAGGCG+AGG | - | chr5_3:488871-488890 | Msa0789850:intron | 45.0% | |
| ATTGAACCAGTAGGACCTCT+AGG | - | chr5_3:488928-488947 | Msa0789850:intron | 45.0% | |
| GTTCAGCCGGTTGAATTGAA+CGG | + | chr5_3:489029-489048 | None:intergenic | 45.0% | |
| GCATATCATACAGCAAAGCG+TGG | - | chr5_3:489383-489402 | Msa0789850:CDS | 45.0% | |
| ATCATACAGCAAAGCGTGGA+TGG | - | chr5_3:489387-489406 | Msa0789850:CDS | 45.0% | |
| GTTGTTGTCAGTAATCACCG+AGG | - | chr5_3:489413-489432 | Msa0789850:intron | 45.0% | |
| GTCAGTAATCACCGAGGATT+TGG | - | chr5_3:489419-489438 | Msa0789850:intron | 45.0% | |
| AGTAATCACCGAGGATTTGG+AGG | - | chr5_3:489422-489441 | Msa0789850:intron | 45.0% | |
| TTGGAACACCTCCAAATCCT+CGG | + | chr5_3:489433-489452 | None:intergenic | 45.0% | |
| GCAGGATAACTAACCGTGAT+TGG | + | chr5_3:489452-489471 | None:intergenic | 45.0% | |
| !! | CTACAATTCTGGATGGACTG+AGG | - | chr5_3:489695-489714 | Msa0789850:intron | 45.0% |
| AGAACCCCCAATTTGTCAGA+GGG | - | chr5_3:490289-490308 | Msa0789850:intron | 45.0% | |
| CTTTCCCTCTGACAAATTGG+GGG | + | chr5_3:490296-490315 | None:intergenic | 45.0% | |
| GCTTTCCCTCTGACAAATTG+GGG | + | chr5_3:490297-490316 | None:intergenic | 45.0% | |
| GGTGAAAATACTCCTGTAGC+TGG | - | chr5_3:490876-490895 | Msa0789850:intron | 45.0% | |
| TGTAGCTGTTTGCTCTCCAT+GGG | - | chr5_3:490902-490921 | Msa0789850:intron | 45.0% | |
| GAAGGAAAGGCAGGCATATA+TGG | - | chr5_3:491075-491094 | Msa0789850:intron | 45.0% | |
| GCATGCTAGTGCTCTTTAAC+TGG | - | chr5_3:491303-491322 | Msa0789850:CDS | 45.0% | |
| CTGGTGTCTGCAGTGAATAT+TGG | + | chr5_3:491578-491597 | None:intergenic | 45.0% | |
| ! | GCACACACCATTTGAGATTG+TGG | + | chr5_3:491927-491946 | None:intergenic | 45.0% |
| GCTTCTCTGTATTAGTGCTC+TGG | - | chr5_3:492230-492249 | Msa0789850:intron | 45.0% | |
| !! | GGTCATCTGGCTTTCTTTGA+AGG | - | chr5_3:492431-492450 | Msa0789850:intron | 45.0% |
| ! | GGATAACTGCATCTAGCCTT+TGG | - | chr5_3:492453-492472 | Msa0789850:CDS | 45.0% |
| ! | TGAAGGGCAGCTAAAAGCAT+TGG | + | chr5_3:492528-492547 | None:intergenic | 45.0% |
| ATTTACTTGCCTGTTGCAGG+TGG | - | chr5_3:492654-492673 | Msa0789850:intron | 45.0% | |
| TTTACTTGCCTGTTGCAGGT+GGG | - | chr5_3:492655-492674 | Msa0789850:intron | 45.0% | |
| CCAAGATAGTACAGGGCAAA+AGG | + | chr5_3:492802-492821 | None:intergenic | 45.0% | |
| ! | CCTTTTGCCCTGTACTATCT+TGG | - | chr5_3:492799-492818 | Msa0789850:intron | 45.0% |
| ATTAACGGTGATGCTGATGC+AGG | - | chr5_3:492868-492887 | Msa0789850:intron | 45.0% | |
| !! | AAATTAAATTAAATTATAGT+GGG | - | chr5_3:489291-489310 | Msa0789850:intron | 5.0% |
| !! | TATAAAAAATAATAATTGAA+GGG | + | chr5_3:492544-492563 | None:intergenic | 5.0% |
| !! | TTATAAAAAATAATAATTGA+AGG | + | chr5_3:492545-492564 | None:intergenic | 5.0% |
| ! | TGATGAAGCGTCCAGTTCCA+TGG | + | chr5_3:487783-487802 | None:intergenic | 50.0% |
| GCGGATATTCCGTTACACCA+TGG | - | chr5_3:488029-488048 | Msa0789850:CDS | 50.0% | |
| AGATGAGGACTGGAAAGCCA+TGG | + | chr5_3:488049-488068 | None:intergenic | 50.0% | |
| CACGACACTTCTGATCGTGT+TGG | + | chr5_3:488196-488215 | None:intergenic | 50.0% | |
| !! | TGATGGTGGAACCCTTGCTT+TGG | - | chr5_3:488294-488313 | Msa0789850:CDS | 50.0% |
| GAACAATGCATTGAACCGGC+AGG | - | chr5_3:488726-488745 | Msa0789850:CDS | 50.0% | |
| CTATGACCTAGAGGTCCTAC+TGG | + | chr5_3:488937-488956 | None:intergenic | 50.0% | |
| ATTCAACCGGCTGAACCGTT+TGG | - | chr5_3:489033-489052 | Msa0789850:intron | 50.0% | |
| ACTGAACCAAACGGTTCAGC+CGG | + | chr5_3:489042-489061 | None:intergenic | 50.0% | |
| TCTCCACAGAGAGAATCCCA+AGG | - | chr5_3:489740-489759 | Msa0789850:intron | 50.0% | |
| CTTAAAGCGAGCAGAGGCAA+TGG | + | chr5_3:490236-490255 | None:intergenic | 50.0% | |
| CATTGCCTCTGCTCGCTTTA+AGG | - | chr5_3:490234-490253 | Msa0789850:intron | 50.0% | |
| GAGAACCCCCAATTTGTCAG+AGG | - | chr5_3:490288-490307 | Msa0789850:intron | 50.0% | |
| GTTGTTGGGCGAAATTCACG+TGG | - | chr5_3:490492-490511 | Msa0789850:intron | 50.0% | |
| CTGTAGCTGTTTGCTCTCCA+TGG | - | chr5_3:490901-490920 | Msa0789850:intron | 50.0% | |
| ! | TTGCTCTCCATGGGACCTTT+TGG | - | chr5_3:490911-490930 | Msa0789850:intron | 50.0% |
| CAAGGCGAGTAAATTGAGGC+TGG | + | chr5_3:491597-491616 | None:intergenic | 50.0% | |
| ACTCGCCTTGCTAATTGGGA+AGG | - | chr5_3:491607-491626 | Msa0789850:CDS | 50.0% | |
| CTCATACTTCCCAACCATGC+GGG | + | chr5_3:492056-492075 | None:intergenic | 50.0% | |
| CCTCATACTTCCCAACCATG+CGG | + | chr5_3:492057-492076 | None:intergenic | 50.0% | |
| TTCATCCCAGGGAATGGCTT+CGG | + | chr5_3:492274-492293 | None:intergenic | 50.0% | |
| CTTGCATTCATCCCAGGGAA+TGG | + | chr5_3:492280-492299 | None:intergenic | 50.0% | |
| TCCCTGGGATGAATGCAAGT+AGG | - | chr5_3:492281-492300 | Msa0789850:intron | 50.0% | |
| GCCTACTTGCATTCATCCCA+GGG | + | chr5_3:492285-492304 | None:intergenic | 50.0% | |
| AGCCTACTTGCATTCATCCC+AGG | + | chr5_3:492286-492305 | None:intergenic | 50.0% | |
| TTGAACGACGAGCCAACAAC+AGG | - | chr5_3:492974-492993 | Msa0789850:CDS | 50.0% | |
| ! | GTGGAACCCTTGCTTTGGAC+TGG | - | chr5_3:488299-488318 | Msa0789850:CDS | 55.0% |
| ATTGAACCGGCAGGACCTCT+AGG | - | chr5_3:488735-488754 | Msa0789850:CDS | 55.0% | |
| CTATGACCTAGAGGTCCTGC+CGG | + | chr5_3:488744-488763 | None:intergenic | 55.0% | |
| GATTCAAAGGCCTCGCCTGT+TGG | + | chr5_3:488884-488903 | None:intergenic | 55.0% | |
| GACTGAGGATACTCGCACAG+TGG | - | chr5_3:489710-489729 | Msa0789850:intron | 55.0% | |
| ACAGCTACAGCTCCAGCTAC+AGG | + | chr5_3:490891-490910 | None:intergenic | 55.0% | |
| ATCATGCCACCCGCATGGTT+GGG | - | chr5_3:492044-492063 | Msa0789850:intron | 55.0% | |
| ATACTTCCCAACCATGCGGG+TGG | + | chr5_3:492053-492072 | None:intergenic | 55.0% | |
| ! | CCGCATGGTTGGGAAGTATG+AGG | - | chr5_3:492054-492073 | Msa0789850:intron | 55.0% |
| ATGGCTTCGGTGGTACAGAC+AGG | + | chr5_3:492261-492280 | None:intergenic | 55.0% | |
| TACCACCGAAGCCATTCCCT+GGG | - | chr5_3:492266-492285 | Msa0789850:intron | 55.0% | |
| AGCTCTTACCCACCTGCAAC+AGG | + | chr5_3:492666-492685 | None:intergenic | 55.0% | |
| GCGCCTTGGGATTCTCTCTG+TGG | + | chr5_3:489746-489765 | None:intergenic | 60.0% | |
| TGACGATCATGCCACCCGCA+TGG | - | chr5_3:492039-492058 | Msa0789850:intron | 60.0% | |
| GATCATGCCACCCGCATGGT+TGG | - | chr5_3:492043-492062 | Msa0789850:intron | 60.0% | |
| GTACCACCGAAGCCATTCCC+TGG | - | chr5_3:492265-492284 | Msa0789850:intron | 60.0% | |
| ATCCCAGGGAATGGCTTCGG+TGG | + | chr5_3:492271-492290 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 487716 | 493292 | 487716 | ID=Msa0789850;Name=Msa0789850 |
| chr5_3 | mRNA | 487716 | 493292 | 487716 | ID=Msa0789850-mRNA-1;Parent=Msa0789850;Name=Msa0789850-mRNA-1;_AED=0.31;_eAED=0.31;_QI=66|1|1|1|1|1|13|274|466 |
| chr5_3 | exon | 487716 | 488118 | 487716 | ID=Msa0789850-mRNA-1:exon:171;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 488266 | 488335 | 488266 | ID=Msa0789850-mRNA-1:exon:170;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 488534 | 488617 | 488534 | ID=Msa0789850-mRNA-1:exon:169;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 488710 | 488840 | 488710 | ID=Msa0789850-mRNA-1:exon:168;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 488933 | 488989 | 488933 | ID=Msa0789850-mRNA-1:exon:167;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 489369 | 489417 | 489369 | ID=Msa0789850-mRNA-1:exon:166;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 489568 | 489653 | 489568 | ID=Msa0789850-mRNA-1:exon:165;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 490076 | 490153 | 490076 | ID=Msa0789850-mRNA-1:exon:164;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 491202 | 491324 | 491202 | ID=Msa0789850-mRNA-1:exon:163;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 491551 | 491640 | 491551 | ID=Msa0789850-mRNA-1:exon:162;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 492451 | 492551 | 492451 | ID=Msa0789850-mRNA-1:exon:161;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 492671 | 492732 | 492671 | ID=Msa0789850-mRNA-1:exon:160;Parent=Msa0789850-mRNA-1 |
| chr5_3 | exon | 492886 | 493292 | 492886 | ID=Msa0789850-mRNA-1:exon:159;Parent=Msa0789850-mRNA-1 |
| chr5_3 | five_prime_UTR | 493227 | 493292 | 493227 | ID=Msa0789850-mRNA-1:five_prime_utr;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 492886 | 493226 | 492886 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 492671 | 492732 | 492671 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 492451 | 492551 | 492451 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 491551 | 491640 | 491551 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 491202 | 491324 | 491202 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 490076 | 490153 | 490076 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 489568 | 489653 | 489568 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 489369 | 489417 | 489369 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 488933 | 488989 | 488933 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 488710 | 488840 | 488710 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 488534 | 488617 | 488534 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 488266 | 488335 | 488266 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | CDS | 487990 | 488118 | 487990 | ID=Msa0789850-mRNA-1:cds;Parent=Msa0789850-mRNA-1 |
| chr5_3 | three_prime_UTR | 487716 | 487989 | 487716 | ID=Msa0789850-mRNA-1:three_prime_utr;Parent=Msa0789850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
