AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450600 MtrunA17_Chr1g0200381 96.137 466 18 0 1 466 1 466 0.0 940
Msa1450600 MtrunA17_Chr1g0200391 77.333 450 96 1 12 461 19 462 0.0 736
Msa1450600 MtrunA17_Chr4g0021061 38.562 306 173 4 95 397 96 389 4.77e-62 208
Msa1450600 MtrunA17_Chr4g0070031 27.600 250 165 3 110 356 142 378 2.70e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450600 AT1G34340.1 63.124 461 167 1 2 459 3 463 0.0 607
Msa1450600 AT5G49950.1 58.352 449 177 4 12 459 14 453 0.0 518
Msa1450600 AT3G50790.2 36.137 321 188 5 95 410 76 384 5.09e-58 197
Msa1450600 AT3G50790.1 36.137 321 188 5 95 410 76 384 5.09e-58 197
Msa1450600 AT2G03140.12 27.072 362 234 8 110 460 168 510 8.38e-26 112
Msa1450600 AT2G03140.3 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.8 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.10 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.9 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.5 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.7 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.1 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.4 27.072 362 234 8 110 460 168 510 1.11e-25 111
Msa1450600 AT2G03140.2 27.072 362 234 8 110 460 168 510 1.17e-25 111
Msa1450600 AT2G03140.6 27.072 362 234 8 110 460 168 510 1.84e-24 107

Find 127 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTACTCGCCTTGCTAAT+TGG 0.159411 tig0033031:-24973 Msa1450600:CDS
CCTATTGTTATTTGTATTCC+TGG 0.169023 tig0033031:-28063 Msa1450600:CDS
TCTGATTGTTTCTACAATTC+TGG 0.179820 tig0033031:-26888 Msa1450600:CDS
TTCTATTTAAAAGATGTTAT+TGG 0.183378 tig0033031:-23285 Msa1450600:three_prime_UTR
TCCAAAGAAGTTGAGGAAAA+TGG 0.218440 tig0033031:+28500 None:intergenic
TTGATGTCAAAAGATGTTAT+TGG 0.222802 tig0033031:-23249 Msa1450600:three_prime_UTR
GTTCCATGGAAATTAGAATT+TGG 0.229305 tig0033031:+28808 None:intergenic
ACCTATTCTTTAGGAGAATC+TGG 0.252656 tig0033031:+23517 None:intergenic
TCTTCAGTTACATTGATATA+AGG 0.256685 tig0033031:+23640 None:intergenic
TTGCTCTCCATGGGACCTTT+TGG 0.281889 tig0033031:-25658 Msa1450600:intron
CTCTACACCAAACACATTAT+TGG 0.282651 tig0033031:-23683 Msa1450600:CDS
AAACGACGGTGTCGTAGATT+TGG 0.288333 tig0033031:+28589 None:intergenic
GTCAGTAATCACCGAGGATT+TGG 0.307193 tig0033031:-27153 Msa1450600:CDS
TTCTTCTGGTTGCCTGTTGT+TGG 0.339938 tig0033031:+23589 None:intergenic
TGATGGTGGAACCCTTGCTT+TGG 0.342571 tig0033031:-28280 Msa1450600:CDS
GGTCATCTGGCTTTCTTTGA+AGG 0.342583 tig0033031:-24144 Msa1450600:CDS
AATTCTAATTTCCATGGAAC+TGG 0.357094 tig0033031:-28805 Msa1450600:exon
AGTATTACATGTATTTCTTC+TGG 0.363252 tig0033031:+23575 None:intergenic
ATTTACTCGCCTTGCTAATT+GGG 0.364057 tig0033031:-24972 Msa1450600:CDS
TGAATAAGTCTTGGATGAAA+TGG 0.366261 tig0033031:+28658 None:intergenic
CTTCAGTTACATTGATATAA+GGG 0.367631 tig0033031:+23641 None:intergenic
AAGGCGCCTTTGTTTATTGT+TGG 0.376066 tig0033031:-26813 Msa1450600:CDS
AACGACGGTGTCGTAGATTT+GGG 0.383118 tig0033031:+28590 None:intergenic
CTGTAGCTGTTTGCTCTCCA+TGG 0.384760 tig0033031:-25668 Msa1450600:CDS
AGAGCTACTAATGAATTTCT+TGG 0.395824 tig0033031:-23895 Msa1450600:CDS
GACTTGCTCTGATTCCAATA+TGG 0.401756 tig0033031:-28740 Msa1450600:CDS
AGAAGAAATACATGTAATAC+TGG 0.402181 tig0033031:-23573 Msa1450600:exon
AACAATAAACAAAGGCGCCT+TGG 0.406898 tig0033031:+26815 None:intergenic
GAATATCCGCCTTGAAGAAT+CGG 0.410833 tig0033031:+28558 None:intergenic
GTGAGGAGGTAATGCCATAT+TGG 0.413036 tig0033031:+28726 None:intergenic
TTTAAAACATGGAGGTCATC+TGG 0.416368 tig0033031:-24157 Msa1450600:CDS
CTTGGATGAAATGGATTTCA+AGG 0.423576 tig0033031:+28667 None:intergenic
GCAGGATAACTAACCGTGAT+TGG 0.426392 tig0033031:+27123 None:intergenic
TATATCAATGTAACTGAAGA+TGG 0.429045 tig0033031:-23637 Msa1450600:CDS
ACAATAAACAAAGGCGCCTT+GGG 0.429506 tig0033031:+26816 None:intergenic
TGTTTGCAGGTAAAATATCT+TGG 0.431469 tig0033031:-25723 Msa1450600:intron
GCTTCTCTGTATTAGTGCTC+TGG 0.434351 tig0033031:-24345 Msa1450600:CDS
CCAGGAATACAAATAACAAT+AGG 0.434889 tig0033031:+28063 None:intergenic
ATCATGCCACCCGCATGGTT+GGG 0.442530 tig0033031:-24531 Msa1450600:CDS
TTCATCCCAGGGAATGGCTT+CGG 0.453042 tig0033031:+24304 None:intergenic
TTCATCCAAGACTTATTCAC+TGG 0.455099 tig0033031:-28654 Msa1450600:CDS
GGATAACTGCATCTAGCCTT+TGG 0.463957 tig0033031:-24122 Msa1450600:intron
CTCCATCTTTCAAATACAAA+AGG 0.467859 tig0033031:-28473 Msa1450600:intron
AGCCTACTTGCATTCATCCC+AGG 0.469700 tig0033031:+24292 None:intergenic
AATCCAAATTCTAATTTCCA+TGG 0.469773 tig0033031:-28811 Msa1450600:exon
GATCATGCCACCCGCATGGT+TGG 0.470851 tig0033031:-24532 Msa1450600:CDS
TCAAAGTGTCCGATTCTTCA+AGG 0.472302 tig0033031:-28567 Msa1450600:CDS
AGGAAAATGGTTTGAAGATG+AGG 0.476049 tig0033031:+28513 None:intergenic
GACGAGTCCAATAATGTGTT+TGG 0.477090 tig0033031:+23676 None:intergenic
GAATCAGAGCAAGTCCTTTG+AGG 0.477461 tig0033031:+28748 None:intergenic
GAGTTGTAACTGAACTGAAC+GGG 0.481580 tig0033031:+28618 None:intergenic
GTGGAACCCTTGCTTTGGAC+TGG 0.482761 tig0033031:-28275 Msa1450600:CDS
TTTATTGTTGGCACAAGTAT+CGG 0.485344 tig0033031:-26801 Msa1450600:CDS
CAATTATTTACTACTTCTGA+TGG 0.485455 tig0033031:-28297 Msa1450600:CDS
TCTGTTCTGTTCTGTTGAAG+TGG 0.492578 tig0033031:+28843 None:intergenic
GTAAAATATCTTGGTGAGGA+TGG 0.494269 tig0033031:-25714 Msa1450600:CDS
TACTTACGTGCAATCTGTAT+CGG 0.494891 tig0033031:-24372 Msa1450600:CDS
AAGTATCGGAGCTAATATTC+TGG 0.498735 tig0033031:-26787 Msa1450600:intron
TTGAACGACGAGCCAACAAC+AGG 0.498890 tig0033031:-23601 Msa1450600:CDS
CTTGCATTCATCCCAGGGAA+TGG 0.502258 tig0033031:+24298 None:intergenic
TTGGACTCGTCAATTGATCA+AGG 0.502387 tig0033031:-23664 Msa1450600:CDS
GTACCACCGAAGCCATTCCC+TGG 0.506706 tig0033031:-24310 Msa1450600:CDS
ATCATACAGCAAAGCGTGGA+TGG 0.507999 tig0033031:-27185 Msa1450600:CDS
GACGCCTCATCAACTTCAAA+CGG 0.510689 tig0033031:-28783 Msa1450600:CDS
ACAGCTACAGCTCCAGCTAC+AGG 0.515335 tig0033031:+25681 None:intergenic
GTCATCTGGCTTTCTTTGAA+GGG 0.517450 tig0033031:-24143 Msa1450600:CDS
TGTAGCTGTTTGCTCTCCAT+GGG 0.521893 tig0033031:-25667 Msa1450600:CDS
GGTGAAAATACTCCTGTAGC+TGG 0.527326 tig0033031:-25693 Msa1450600:CDS
ATGGCTTCGGTGGTACAGAC+AGG 0.528211 tig0033031:+24317 None:intergenic
ATTGTTTCTACAATTCTGGA+TGG 0.529663 tig0033031:-26884 Msa1450600:CDS
ACTCGCCTTGCTAATTGGGA+AGG 0.533476 tig0033031:-24968 Msa1450600:CDS
TCCAGATTCTCCTAAAGAAT+AGG 0.533539 tig0033031:-23518 Msa1450600:three_prime_UTR
TGATGAGGCGTCCAGTTCCA+TGG 0.535507 tig0033031:+28794 None:intergenic
TTATATGCATGAACAAAAGA+AGG 0.538820 tig0033031:-23854 Msa1450600:intron
AATGGTTTGAAGATGAGGAC+TGG 0.540210 tig0033031:+28518 None:intergenic
GAGCATTTCCAAAGAAGTTG+AGG 0.547086 tig0033031:+28493 None:intergenic
ATTTGGAGGTGTTCCAATCA+CGG 0.548433 tig0033031:-27136 Msa1450600:intron
CGTTACGATACATTGGCACT+AGG 0.548703 tig0033031:-23345 Msa1450600:three_prime_UTR
TTATTTACTACTTCTGATGG+TGG 0.549292 tig0033031:-28294 Msa1450600:CDS
CTCATACTTCCCAACCATGC+GGG 0.550717 tig0033031:+24522 None:intergenic
CCGCATGGTTGGGAAGTATG+AGG 0.551051 tig0033031:-24521 Msa1450600:intron
CTATTCCTTCCCAATTAGCA+AGG 0.554281 tig0033031:+24963 None:intergenic
GACTGGATAACAAGTTCTGA+TGG 0.559300 tig0033031:-28258 Msa1450600:intron
TGAATCCAGTGAATAAGTCT+TGG 0.562530 tig0033031:+28649 None:intergenic
TTGTTATCCAGTCCAAAGCA+AGG 0.568743 tig0033031:+28268 None:intergenic
AGTAATCACCGAGGATTTGG+AGG 0.570968 tig0033031:-27150 Msa1450600:CDS
GCCTACTTGCATTCATCCCA+GGG 0.576549 tig0033031:+24293 None:intergenic
TTACTAACCAAAAGGTCCCA+TGG 0.579056 tig0033031:+25651 None:intergenic
TAGCAACAACATTATCGTCA+TGG 0.582836 tig0033031:+28100 None:intergenic
CAATGTAACTGAAGATGGAA+TGG 0.584166 tig0033031:-23632 Msa1450600:CDS
GGTTACTTGTTCATCCTCAA+AGG 0.584179 tig0033031:-28762 Msa1450600:CDS
ACTGGAAAGCCATGGTGTAA+CGG 0.586849 tig0033031:+28536 None:intergenic
TACCACCGAAGCCATTCCCT+GGG 0.588284 tig0033031:-24309 Msa1450600:CDS
GTGTTAGCTACTTTAAAACA+TGG 0.590159 tig0033031:-24168 Msa1450600:CDS
TGACGATCATGCCACCCGCA+TGG 0.590304 tig0033031:-24536 Msa1450600:CDS
CAAGGCGAGTAAATTGAGGC+TGG 0.594294 tig0033031:+24981 None:intergenic
TATAATAAAGCACTGGCAGG+TGG 0.596101 tig0033031:-25178 Msa1450600:CDS
TTGGAACACCTCCAAATCCT+CGG 0.607876 tig0033031:+27142 None:intergenic
ATCCCAGGGAATGGCTTCGG+TGG 0.609768 tig0033031:+24307 None:intergenic
TAATTGGGAAGGAATAGAAA+AGG 0.611433 tig0033031:-24957 Msa1450600:intron
TTAGCAAGGCGAGTAAATTG+AGG 0.613735 tig0033031:+24977 None:intergenic
ATATTGCCGTTACGATACAT+TGG 0.615642 tig0033031:-23352 Msa1450600:three_prime_UTR
AGAGTTGTAACTGAACTGAA+CGG 0.619759 tig0033031:+28617 None:intergenic
TGTTATCCAGTCCAAAGCAA+GGG 0.621323 tig0033031:+28269 None:intergenic
CTACAATTCTGGATGGACTG+AGG 0.627761 tig0033031:-26877 Msa1450600:CDS
GAAGAGTAGCAAAAGTGAGG+AGG 0.629834 tig0033031:+28712 None:intergenic
GCAGGTAAAATATCTTGGTG+AGG 0.631080 tig0033031:-25718 Msa1450600:intron
GCGCCTTGGGATTCTCTCTG+TGG 0.635002 tig0033031:+26829 None:intergenic
ATACTTCCCAACCATGCGGG+TGG 0.645678 tig0033031:+24525 None:intergenic
GGTTATCTCGACAAAATCGA+TGG 0.646602 tig0033031:-23387 Msa1450600:three_prime_UTR
TGAGAAGAGTAGCAAAAGTG+AGG 0.646619 tig0033031:+28709 None:intergenic
GTAACCGTTTGAAGTTGATG+AGG 0.648261 tig0033031:+28779 None:intergenic
CTAGTGCCAATGTATCGTAA+CGG 0.654312 tig0033031:+23346 None:intergenic
GCGGATATTCCGTTACACCA+TGG 0.661428 tig0033031:-28545 Msa1450600:CDS
CCTCATACTTCCCAACCATG+CGG 0.669193 tig0033031:+24521 None:intergenic
AGAGCACTAATACAGAGAAG+CGG 0.669736 tig0033031:+24347 None:intergenic
GCATATCATACAGCAAAGCG+TGG 0.679163 tig0033031:-27189 Msa1450600:CDS
GACTGAGGATACTCGCACAG+TGG 0.682605 tig0033031:-26862 Msa1450600:CDS
AATCGGACACTTTGAAACGA+CGG 0.687644 tig0033031:+28575 None:intergenic
CTTGTGCCAACAATAAACAA+AGG 0.691706 tig0033031:+26807 None:intergenic
GAAGAATCACTTGTTAAACC+AGG 0.692103 tig0033031:+28045 None:intergenic
TGTAACTGAAGATGGAATGG+TGG 0.707476 tig0033031:-23629 Msa1450600:CDS
TTAGCTACTTTAAAACATGG+AGG 0.710037 tig0033031:-24165 Msa1450600:CDS
AGATGAGGACTGGAAAGCCA+TGG 0.717732 tig0033031:+28528 None:intergenic
TCTCCACAGAGAGAATCCCA+AGG 0.738420 tig0033031:-26832 Msa1450600:CDS
AAGTGTCCGATTCTTCAAGG+CGG 0.747552 tig0033031:-28564 Msa1450600:CDS
GTTGTTGTCAGTAATCACCG+AGG 0.777365 tig0033031:-27159 Msa1450600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTAAATTAAATTATAG+TGG - tig0033031:24797-24816 Msa1450600:intron 10.0%
!! AAAAAATAACAAAACAAATA+GGG - tig0033031:25889-25908 Msa1450600:intron 10.0%
!! ATTAAATCTTAGTAGTTTAT+TGG - tig0033031:23746-23765 Msa1450600:intron 15.0%
!!! TTATTAAAACATTGATTCAA+AGG + tig0033031:24211-24230 None:intergenic 15.0%
!! TAATAAACGTGTTATAATAA+GGG + tig0033031:24744-24763 None:intergenic 15.0%
!! TTAATAAACGTGTTATAATA+AGG + tig0033031:24745-24764 None:intergenic 15.0%
!!! ATGTATGTTTGTATTAATTT+TGG - tig0033031:25664-25683 Msa1450600:CDS 15.0%
!! GAAAAAATAACAAAACAAAT+AGG - tig0033031:25888-25907 Msa1450600:intron 15.0%
!! AAAAATTTAAGCATTAACAT+AGG + tig0033031:26170-26189 None:intergenic 15.0%
!! AATCTATTTGATATAATCTA+TGG - tig0033031:26730-26749 Msa1450600:intron 15.0%
!!! ATATTAAATGTAATTAGTCT+AGG - tig0033031:27288-27307 Msa1450600:intron 15.0%
!! ATACGAGAAAAATTTAATAT+CGG + tig0033031:27598-27617 None:intergenic 15.0%
!!! TTTCATTTGTTTTATAATAG+CGG + tig0033031:28134-28153 None:intergenic 15.0%
!! TTCTATTTAAAAGATGTTAT+TGG - tig0033031:28794-28813 Msa1450600:CDS 15.0%
!! TTTAAGTATTTAGTGCTAAA+AGG - tig0033031:24602-24621 Msa1450600:intron 20.0%
!! AAGTATATCTTAATCTAAAG+TGG + tig0033031:25071-25090 None:intergenic 20.0%
!! TTAAGAATTTACATTACTAG+AGG + tig0033031:25157-25176 None:intergenic 20.0%
!! TGTATGTGATTGTATTTATA+TGG + tig0033031:25434-25453 None:intergenic 20.0%
!!! TACTTGAATGTTTTTTTTCA+TGG - tig0033031:25539-25558 Msa1450600:intron 20.0%
!! TTAAAACACACTACTTTATT+TGG + tig0033031:26107-26126 None:intergenic 20.0%
!! AATACTATTTACTAACCAAA+AGG + tig0033031:26439-26458 None:intergenic 20.0%
!! TTATGTACATTAGTAAATGT+CGG + tig0033031:26505-26524 None:intergenic 20.0%
!! CTTTCCTTCTAATTTAAATT+GGG + tig0033031:26574-26593 None:intergenic 20.0%
!!! TTATTATAAAACTTTTGCAC+AGG + tig0033031:26889-26908 None:intergenic 20.0%
!!! AAAGTTTTATAATAAAGCAC+TGG - tig0033031:26894-26913 Msa1450600:intron 20.0%
!! TAAAAAAACTAGAAAGATAG+AGG + tig0033031:26953-26972 None:intergenic 20.0%
!! AAAAATGAATAGCAACTATT+TGG + tig0033031:27356-27375 None:intergenic 20.0%
!! TACGAGAAAAATTTAATATC+GGG + tig0033031:27597-27616 None:intergenic 20.0%
!! AAAGAGTAACACATTAAAAT+GGG + tig0033031:27869-27888 None:intergenic 20.0%
!! AAAAGAGTAACACATTAAAA+TGG + tig0033031:27870-27889 None:intergenic 20.0%
!! GAATATATTATAACCAATCA+AGG + tig0033031:28100-28119 None:intergenic 20.0%
!!! TCTTTTTTAACCTATTCTTT+AGG + tig0033031:28574-28593 None:intergenic 20.0%
!! AAAGAATAGGTTAAAAAAGA+TGG - tig0033031:28574-28593 Msa1450600:CDS 20.0%
!!! AGAAATGAATTTTATTAGAG+AGG + tig0033031:28778-28797 None:intergenic 20.0%
!!! AAGTGGTTTTGAATTTTGAT+AGG + tig0033031:23222-23241 None:intergenic 25.0%
! AATCCAAATTCTAATTTCCA+TGG - tig0033031:23268-23287 Msa1450600:three_prime_UTR 25.0%
! AGAATGAAAATGTGAAATGA+CGG + tig0033031:23638-23657 None:intergenic 25.0%
! CAATTATTTACTACTTCTGA+TGG - tig0033031:23782-23801 Msa1450600:intron 25.0%
! ATGATACACAAAAATCTGAA+AGG + tig0033031:23930-23949 None:intergenic 25.0%
! CATTATTATGTTACAGTTTC+TGG - tig0033031:23947-23966 Msa1450600:intron 25.0%
!! CAAATAAACAAAAGCATGAT+AGG + tig0033031:24076-24095 None:intergenic 25.0%
! AGTCAATTAACTTCTAACTT+GGG + tig0033031:24170-24189 None:intergenic 25.0%
!!! TCATTAAAACGTTGATTCAA+AGG + tig0033031:24404-24423 None:intergenic 25.0%
!!! TTCACTTCTTTTTGTTGATT+AGG - tig0033031:24775-24794 Msa1450600:intron 25.0%
!! TCTATATATTTCTAACTTGC+AGG + tig0033031:24977-24996 None:intergenic 25.0%
!! TAAGATATACTTCCTTTTGT+TGG - tig0033031:25079-25098 Msa1450600:intron 25.0%
! GTATTTATATGGAAACTTCT+AGG + tig0033031:25423-25442 None:intergenic 25.0%
!! TTGAAAACAGTTTTTGATCA+AGG + tig0033031:25615-25634 None:intergenic 25.0%
! AATACAAACATACATGAACA+AGG + tig0033031:25659-25678 None:intergenic 25.0%
!! TTTCCATATTTTCTTCATGT+GGG + tig0033031:25872-25891 None:intergenic 25.0%
!! TTTTCCATATTTTCTTCATG+TGG + tig0033031:25873-25892 None:intergenic 25.0%
!!! ACACAGTTTTGGATTAATTA+TGG + tig0033031:25921-25940 None:intergenic 25.0%
! TTAACATAGGAGTTATACTT+CGG + tig0033031:26157-26176 None:intergenic 25.0%
! TTTACTTATGTTATGACCAT+TGG - tig0033031:26194-26213 Msa1450600:intron 25.0%
! GTAGTTTGAAAAGCAAATAT+AGG + tig0033031:26231-26250 None:intergenic 25.0%
! CCTTTCCTTCTAATTTAAAT+TGG + tig0033031:26575-26594 None:intergenic 25.0%
! CCAATTTAAATTAGAAGGAA+AGG - tig0033031:26572-26591 Msa1450600:intron 25.0%
!!! GTTTTTTTACTCATCTTTCT+AGG - tig0033031:26964-26983 Msa1450600:intron 25.0%
! TATAAAATACCAGAATGAAG+AGG + tig0033031:27262-27281 None:intergenic 25.0%
!!! TGCTATTCATTTTTATTCGT+TGG - tig0033031:27362-27381 Msa1450600:intron 25.0%
!!! AGAATAAGTCTTGTGTTTTA+AGG + tig0033031:27401-27420 None:intergenic 25.0%
! AGTGCATATATATTCTTTGT+AGG - tig0033031:27501-27520 Msa1450600:intron 25.0%
!!! TATTTTAGATAGCAGACATA+AGG + tig0033031:27637-27656 None:intergenic 25.0%
! TAACAAAATATTGAAGAGTC+AGG + tig0033031:28003-28022 None:intergenic 25.0%
!! TCTTTTGTTCATGCATATAA+TGG + tig0033031:28225-28244 None:intergenic 25.0%
! TTATATGCATGAACAAAAGA+AGG - tig0033031:28225-28244 Msa1450600:intron 25.0%
! CTTAATAAGCTTATTGACAA+AGG - tig0033031:28271-28290 Msa1450600:CDS 25.0%
!! ACTACTGTTTTCTCTATTAA+CGG - tig0033031:28357-28376 Msa1450600:intron 25.0%
! CTTCAGTTACATTGATATAA+GGG + tig0033031:28441-28460 None:intergenic 25.0%
! TCTTCAGTTACATTGATATA+AGG + tig0033031:28442-28461 None:intergenic 25.0%
! TATATCAATGTAACTGAAGA+TGG - tig0033031:28442-28461 Msa1450600:intron 25.0%
! AGTATTACATGTATTTCTTC+TGG + tig0033031:28507-28526 None:intergenic 25.0%
! AGAAGAAATACATGTAATAC+TGG - tig0033031:28506-28525 Msa1450600:CDS 25.0%
!! AATTTTATTAGAGAGGAAAG+AGG + tig0033031:28771-28790 None:intergenic 25.0%
! TTGATGTCAAAAGATGTTAT+TGG - tig0033031:28830-28849 Msa1450600:five_prime_UTR 25.0%
GTTCCATGGAAATTAGAATT+TGG + tig0033031:23274-23293 None:intergenic 30.0%
AATTCTAATTTCCATGGAAC+TGG - tig0033031:23274-23293 Msa1450600:three_prime_UTR 30.0%
TGAATAAGTCTTGGATGAAA+TGG + tig0033031:23424-23443 None:intergenic 30.0%
CTCCATCTTTCAAATACAAA+AGG - tig0033031:23606-23625 Msa1450600:CDS 30.0%
! GACCTTTTGTATTTGAAAGA+TGG + tig0033031:23611-23630 None:intergenic 30.0%
GATGCATATACAACAAGAAA+AGG + tig0033031:23664-23683 None:intergenic 30.0%
TTATTTACTACTTCTGATGG+TGG - tig0033031:23785-23804 Msa1450600:intron 30.0%
CCAGGAATACAAATAACAAT+AGG + tig0033031:24019-24038 None:intergenic 30.0%
!! CCTATTGTTATTTGTATTCC+TGG - tig0033031:24016-24035 Msa1450600:intron 30.0%
!! CATGCTTTTGTTTATTTGTG+TGG - tig0033031:24078-24097 Msa1450600:intron 30.0%
CAGTCAATTAACTTCTAACT+TGG + tig0033031:24171-24190 None:intergenic 30.0%
TTAGAAGTTAATTGACTGCT+AGG - tig0033031:24173-24192 Msa1450600:CDS 30.0%
GTTTGGTTATTTGAACAGTT+TGG + tig0033031:24314-24333 None:intergenic 30.0%
!! AAACGTTGATTTATTCCAAC+AGG - tig0033031:24373-24392 Msa1450600:CDS 30.0%
! TTGAGTTGTAGTATTGTCAA+CGG + tig0033031:24494-24513 None:intergenic 30.0%
AAAAATCGAACTGAACCAAA+CGG + tig0033031:24558-24577 None:intergenic 30.0%
CGTTAACAAAACAAGTCTAT+CGG - tig0033031:24642-24661 Msa1450600:intron 30.0%
TCGTTAATCGTTCATTTGTA+AGG - tig0033031:24677-24696 Msa1450600:intron 30.0%
! GTGTTATAATAAGGGTACAA+GGG + tig0033031:24736-24755 None:intergenic 30.0%
!! AATTAAATTATAGTGGGCAG+TGG - tig0033031:24804-24823 Msa1450600:intron 30.0%
! TTTGAGATACTACAACGAAA+GGG + tig0033031:24864-24883 None:intergenic 30.0%
TGCAATCTTCAAATAACCAT+TGG - tig0033031:25019-25038 Msa1450600:intron 30.0%
!!! TCATAACGTTTTTTAGCCAA+TGG + tig0033031:25038-25057 None:intergenic 30.0%
ATTGGCTAAAAAACGTTATG+AGG - tig0033031:25037-25056 Msa1450600:intron 30.0%
TAAAAAACGTTATGAGGTTG+TGG - tig0033031:25043-25062 Msa1450600:intron 30.0%
!! TCTGATTGTTTCTACAATTC+TGG - tig0033031:25191-25210 Msa1450600:CDS 30.0%
!! ATTGTTTCTACAATTCTGGA+TGG - tig0033031:25195-25214 Msa1450600:CDS 30.0%
TTTATTGTTGGCACAAGTAT+CGG - tig0033031:25278-25297 Msa1450600:intron 30.0%
CTAATATTCTGGTAAATTCG+TGG - tig0033031:25303-25322 Msa1450600:intron 30.0%
TTCTAGGTTTAGACTATTTG+AGG + tig0033031:25407-25426 None:intergenic 30.0%
AACACTGTAATTAAATCAGC+TGG + tig0033031:25483-25502 None:intergenic 30.0%
! AGCTGATTTAATTACAGTGT+TGG - tig0033031:25482-25501 Msa1450600:intron 30.0%
! GCTGATTTAATTACAGTGTT+GGG - tig0033031:25483-25502 Msa1450600:intron 30.0%
AGTAAAGATACAGATCAATG+TGG + tig0033031:25523-25542 None:intergenic 30.0%
TTGATCAAGGATTATGCATA+CGG + tig0033031:25602-25621 None:intergenic 30.0%
TTCTCTAGATAGTCATTACA+AGG + tig0033031:25783-25802 None:intergenic 30.0%
! TCATCAAAAACACACAGTTT+TGG + tig0033031:25932-25951 None:intergenic 30.0%
!!! TCCAACACATTTTTTGTTGT+TGG - tig0033031:25987-26006 Msa1450600:intron 30.0%
!!! CCAACACATTTTTTGTTGTT+GGG - tig0033031:25988-26007 Msa1450600:intron 30.0%
! GATCCCATAACTTTAGAAAT+GGG - tig0033031:26024-26043 Msa1450600:intron 30.0%
!! GAACCCATTTCTAAAGTTAT+GGG + tig0033031:26030-26049 None:intergenic 30.0%
ATGGATCTCATCTTCTATTT+GGG + tig0033031:26054-26073 None:intergenic 30.0%
TATGGATCTCATCTTCTATT+TGG + tig0033031:26055-26074 None:intergenic 30.0%
AATAGAAGATGAGATCCATA+TGG - tig0033031:26055-26074 Msa1450600:intron 30.0%
!! TGATTTTGAAGATTGTTTGC+AGG - tig0033031:26343-26362 Msa1450600:intron 30.0%
TGTTTGCAGGTAAAATATCT+TGG - tig0033031:26356-26375 Msa1450600:intron 30.0%
TTCAGATGAAAGATAGATTG+TGG + tig0033031:26545-26564 None:intergenic 30.0%
TGTGCCCAATTTAAATTAGA+AGG - tig0033031:26567-26586 Msa1450600:intron 30.0%
TTTAAATTAGAAGGAAAGGC+AGG - tig0033031:26576-26595 Msa1450600:intron 30.0%
TTGGAATCGTATGAACATAA+TGG - tig0033031:26624-26643 Msa1450600:intron 30.0%
TGTATAATGTTTGCAGATAG+CGG - tig0033031:26843-26862 Msa1450600:CDS 30.0%
!!! TTTTATAATAAAGCACTGGC+AGG - tig0033031:26898-26917 Msa1450600:intron 30.0%
!!! GATTTTTCATGTTAGTCTTC+AGG + tig0033031:27020-27039 None:intergenic 30.0%
TAATTGGGAAGGAATAGAAA+AGG - tig0033031:27122-27141 Msa1450600:intron 30.0%
TTCATTATTCCTCTTCATTC+TGG - tig0033031:27250-27269 Msa1450600:intron 30.0%
!!! AAGATGCATGTTGATTTTAG+AGG - tig0033031:27330-27349 Msa1450600:intron 30.0%
AATAGTACCACAATCTCAAA+TGG - tig0033031:27421-27440 Msa1450600:intron 30.0%
ACTTCACCAAATCAAAAACA+CGG + tig0033031:27458-27477 None:intergenic 30.0%
AGTAATGCAACAGAAATAGA+AGG + tig0033031:27840-27859 None:intergenic 30.0%
!! TAATGTGTTACTCTTTTGAC+AGG - tig0033031:27873-27892 Msa1450600:intron 30.0%
!! AATGTGTTACTCTTTTGACA+GGG - tig0033031:27874-27893 Msa1450600:intron 30.0%
!! GTGTTAGCTACTTTAAAACA+TGG - tig0033031:27911-27930 Msa1450600:intron 30.0%
!! TTAGCTACTTTAAAACATGG+AGG - tig0033031:27914-27933 Msa1450600:intron 30.0%
AGAGCTACTAATGAATTTCT+TGG - tig0033031:28184-28203 Msa1450600:intron 30.0%
ATAGAGAAAACAGTAGTTTC+AGG + tig0033031:28354-28373 None:intergenic 30.0%
! CTTGGATGAAATGGATTTCA+AGG + tig0033031:23415-23434 None:intergenic 35.0%
TTCATCCAAGACTTATTCAC+TGG - tig0033031:23425-23444 Msa1450600:intron 35.0%
TGAATCCAGTGAATAAGTCT+TGG + tig0033031:23433-23452 None:intergenic 35.0%
AGAGTTGTAACTGAACTGAA+CGG + tig0033031:23465-23484 None:intergenic 35.0%
AGGAAAATGGTTTGAAGATG+AGG + tig0033031:23569-23588 None:intergenic 35.0%
! ACCATTTTCCTCAACTTCTT+TGG - tig0033031:23578-23597 Msa1450600:exon 35.0%
TCCAAAGAAGTTGAGGAAAA+TGG + tig0033031:23582-23601 None:intergenic 35.0%
AAAATCTGAAAGGTCAACGA+AGG + tig0033031:23920-23939 None:intergenic 35.0%
TAGCAACAACATTATCGTCA+TGG + tig0033031:23982-24001 None:intergenic 35.0%
! GAAGAATCACTTGTTAAACC+AGG + tig0033031:24037-24056 None:intergenic 35.0%
AGCATGATAGGATAACTTAC+AGG + tig0033031:24064-24083 None:intergenic 35.0%
! TTTTCCCAATTCCGAATACA+GGG + tig0033031:24134-24153 None:intergenic 35.0%
AAGTTAATTGACTGCTAGGT+CGG - tig0033031:24177-24196 Msa1450600:CDS 35.0%
AATCGAACAATGCATTGAAC+CGG - tig0033031:24229-24248 Msa1450600:intron 35.0%
ACAATTGAACTATGACCTAG+AGG + tig0033031:24260-24279 None:intergenic 35.0%
AAACAATGCATTGAACCAGT+AGG - tig0033031:24426-24445 Msa1450600:intron 35.0%
TTGTAGTATTGTCAACGGTT+CGG + tig0033031:24489-24508 None:intergenic 35.0%
! CGTGTTATAATAAGGGTACA+AGG + tig0033031:24737-24756 None:intergenic 35.0%
! GTTTGAGATACTACAACGAA+AGG + tig0033031:24865-24884 None:intergenic 35.0%
! CTTCCTTTTGTTGGAATTGT+AGG - tig0033031:25088-25107 Msa1450600:intron 35.0%
AAGCCTACAATTCCAACAAA+AGG + tig0033031:25094-25113 None:intergenic 35.0%
CTTGTGCCAACAATAAACAA+AGG + tig0033031:25275-25294 None:intergenic 35.0%
!! AAGTATCGGAGCTAATATTC+TGG - tig0033031:25292-25311 Msa1450600:intron 35.0%
ATACAGATCAATGTGGTGAA+GGG + tig0033031:25516-25535 None:intergenic 35.0%
GATTATGCATACGGAAAACA+TGG + tig0033031:25593-25612 None:intergenic 35.0%
! ATTTTCTTCATGTGGGAACA+TGG + tig0033031:25865-25884 None:intergenic 35.0%
GTTCCCACATGAAGAAAATA+TGG - tig0033031:25866-25885 Msa1450600:intron 35.0%
CCCAACAACAAAAAATGTGT+TGG + tig0033031:25991-26010 None:intergenic 35.0%
! GGATCCCATAACTTTAGAAA+TGG - tig0033031:26023-26042 Msa1450600:intron 35.0%
!! GGAACCCATTTCTAAAGTTA+TGG + tig0033031:26031-26050 None:intergenic 35.0%
TGGATCTCATCTTCTATTTG+GGG + tig0033031:26053-26072 None:intergenic 35.0%
GCAGATTTCACTAAACCATA+TGG + tig0033031:26073-26092 None:intergenic 35.0%
TATGTTATGACCATTGGCAT+TGG - tig0033031:26200-26219 Msa1450600:intron 35.0%
AACAAATGTGCAATTTCCAG+TGG + tig0033031:26258-26277 None:intergenic 35.0%
AGTCACATATTCAAAGAGCT+TGG - tig0033031:26296-26315 Msa1450600:intron 35.0%
TATTCAAAGAGCTTGGCAAT+TGG - tig0033031:26303-26322 Msa1450600:intron 35.0%
GTAAAATATCTTGGTGAGGA+TGG - tig0033031:26365-26384 Msa1450600:intron 35.0%
ATAGCTAGTATGCTATAAGC+TGG + tig0033031:26682-26701 None:intergenic 35.0%
GCTATCTGCAAACATTATAC+AGG + tig0033031:26844-26863 None:intergenic 35.0%
AATTTACTCGCCTTGCTAAT+TGG - tig0033031:27106-27125 Msa1450600:intron 35.0%
ATTTACTCGCCTTGCTAATT+GGG - tig0033031:27107-27126 Msa1450600:intron 35.0%
GTATGACCAATATTCACTGA+AGG - tig0033031:27209-27228 Msa1450600:intron 35.0%
TGAAAGCCTTCAGTGAATAT+TGG + tig0033031:27218-27237 None:intergenic 35.0%
! AGTCTAGGACATTGTTTAAG+TGG - tig0033031:27303-27322 Msa1450600:intron 35.0%
! TTCTCGTATCATCTCTTTTC+TGG - tig0033031:27609-27628 Msa1450600:intron 35.0%
TACTTACGTGCAATCTGTAT+CGG - tig0033031:27707-27726 Msa1450600:intron 35.0%
! TTTAAAACATGGAGGTCATC+TGG - tig0033031:27922-27941 Msa1450600:intron 35.0%
CATCGATATCATTCCTTGAT+TGG - tig0033031:28084-28103 Msa1450600:CDS 35.0%
TATAATAGCGGCTGCTTAAT+TGG + tig0033031:28122-28141 None:intergenic 35.0%
CTCTACACCAAACACATTAT+TGG - tig0033031:28396-28415 Msa1450600:intron 35.0%
CAATGTAACTGAAGATGGAA+TGG - tig0033031:28447-28466 Msa1450600:intron 35.0%
TCCAGATTCTCCTAAAGAAT+AGG - tig0033031:28561-28580 Msa1450600:CDS 35.0%
! ACCTATTCTTTAGGAGAATC+TGG + tig0033031:28565-28584 None:intergenic 35.0%
!! TTAAAGAGGTGTTGCATTGT+CGG + tig0033031:28656-28675 None:intergenic 35.0%
CGTAGGCTTCAAAATTAAAG+AGG + tig0033031:28670-28689 None:intergenic 35.0%
!!! TTTAATTTTGAAGCCTACGC+TGG - tig0033031:28671-28690 Msa1450600:CDS 35.0%
ATATTGCCGTTACGATACAT+TGG - tig0033031:28727-28746 Msa1450600:CDS 35.0%
TCTGTTCTGTTCTGTTGAAG+TGG + tig0033031:23239-23258 None:intergenic 40.0%
!! GTAACCGTTTGAAGTTGATG+AGG + tig0033031:23303-23322 None:intergenic 40.0%
GGTTACTTGTTCATCCTCAA+AGG - tig0033031:23317-23336 Msa1450600:three_prime_UTR 40.0%
! GACTTGCTCTGATTCCAATA+TGG - tig0033031:23339-23358 Msa1450600:three_prime_UTR 40.0%
TGAGAAGAGTAGCAAAAGTG+AGG + tig0033031:23373-23392 None:intergenic 40.0%
GAGTTGTAACTGAACTGAAC+GGG + tig0033031:23464-23483 None:intergenic 40.0%
!! AATCGGACACTTTGAAACGA+CGG + tig0033031:23507-23526 None:intergenic 40.0%
! TCAAAGTGTCCGATTCTTCA+AGG - tig0033031:23512-23531 Msa1450600:three_prime_UTR 40.0%
GAATATCCGCCTTGAAGAAT+CGG + tig0033031:23524-23543 None:intergenic 40.0%
AATGGTTTGAAGATGAGGAC+TGG + tig0033031:23564-23583 None:intergenic 40.0%
GAGCATTTCCAAAGAAGTTG+AGG + tig0033031:23589-23608 None:intergenic 40.0%
TGTTATCCAGTCCAAAGCAA+GGG + tig0033031:23813-23832 None:intergenic 40.0%
TTGTTATCCAGTCCAAAGCA+AGG + tig0033031:23814-23833 None:intergenic 40.0%
! GACTGGATAACAAGTTCTGA+TGG - tig0033031:23821-23840 Msa1450600:intron 40.0%
! GTTTTCCCAATTCCGAATAC+AGG + tig0033031:24135-24154 None:intergenic 40.0%
CTAACTTGGGCATAACTACA+TGG + tig0033031:24157-24176 None:intergenic 40.0%
AGTTAATTGACTGCTAGGTC+GGG - tig0033031:24178-24197 Msa1450600:CDS 40.0%
AACCAAACCGTTGACAATAC+TGG - tig0033031:24326-24345 Msa1450600:CDS 40.0%
AACCAGTATTGTCAACGGTT+TGG + tig0033031:24331-24350 None:intergenic 40.0%
TTGATTTATTCCAACAGGCG+AGG - tig0033031:24378-24397 Msa1450600:CDS 40.0%
ACAGTTGAACTATGACCTAG+AGG + tig0033031:24453-24472 None:intergenic 40.0%
ACCAAACCGTTCAATTCAAC+CGG - tig0033031:24527-24546 Msa1450600:CDS 40.0%
TCTAGCATATTTGACGACGT+CGG + tig0033031:24709-24728 None:intergenic 40.0%
!! ATTTGGAGGTGTTCCAATCA+CGG - tig0033031:24943-24962 Msa1450600:intron 40.0%
!! ACAATAAACAAAGGCGCCTT+GGG + tig0033031:25266-25285 None:intergenic 40.0%
!! AACAATAAACAAAGGCGCCT+TGG + tig0033031:25267-25286 None:intergenic 40.0%
! AAGGCGCCTTTGTTTATTGT+TGG - tig0033031:25266-25285 Msa1450600:intron 40.0%
GATACAGATCAATGTGGTGA+AGG + tig0033031:25517-25536 None:intergenic 40.0%
ATAATCCTTAAAGCGAGCAG+AGG + tig0033031:25752-25771 None:intergenic 40.0%
TGCTTTCCCTCTGACAAATT+GGG + tig0033031:25808-25827 None:intergenic 40.0%
TTGCTTTCCCTCTGACAAAT+TGG + tig0033031:25809-25828 None:intergenic 40.0%
GGATCTCATCTTCTATTTGG+GGG + tig0033031:26052-26071 None:intergenic 40.0%
ATAGGATGAACCAATGCCAA+TGG + tig0033031:26213-26232 None:intergenic 40.0%
! TTTTCAAACTACAGCACCAC+TGG - tig0033031:26239-26258 Msa1450600:intron 40.0%
GCAGGTAAAATATCTTGGTG+AGG - tig0033031:26361-26380 Msa1450600:intron 40.0%
TTACTAACCAAAAGGTCCCA+TGG + tig0033031:26431-26450 None:intergenic 40.0%
TGGAAATGTTGGAGAACGTT+TGG - tig0033031:26605-26624 Msa1450600:intron 40.0%
! GCATACTAGCTATGTGCTTT+TGG - tig0033031:26689-26708 Msa1450600:intron 40.0%
CATTGCTAGTGCTCTTTAAC+TGG - tig0033031:26807-26826 Msa1450600:CDS 40.0%
! AAAACTTTTGCACAGGAGCA+CGG + tig0033031:26882-26901 None:intergenic 40.0%
!! TATAATAAAGCACTGGCAGG+TGG - tig0033031:26901-26920 Msa1450600:intron 40.0%
TTAGCAAGGCGAGTAAATTG+AGG + tig0033031:27105-27124 None:intergenic 40.0%
CTATTCCTTCCCAATTAGCA+AGG + tig0033031:27119-27138 None:intergenic 40.0%
TTGGGAAGGAATAGAAAAGG+TGG - tig0033031:27125-27144 Msa1450600:intron 40.0%
!! GCTGTTCCGTGTTTTTGATT+TGG - tig0033031:27449-27468 Msa1450600:intron 40.0%
! AGAGCACTAATACAGAGAAG+CGG + tig0033031:27735-27754 None:intergenic 40.0%
!! GTCATCTGGCTTTCTTTGAA+GGG - tig0033031:27936-27955 Msa1450600:intron 40.0%
CAAAACGAGTCAAGTACCAA+AGG + tig0033031:27976-27995 None:intergenic 40.0%
ATGATTTACTTGCCTGTTGC+AGG - tig0033031:28155-28174 Msa1450600:intron 40.0%
TAGTGCACCAAGATAGTACA+GGG + tig0033031:28313-28332 None:intergenic 40.0%
TTAGTGCACCAAGATAGTAC+AGG + tig0033031:28314-28333 None:intergenic 40.0%
! TACTATCTTGGTGCACTAAG+TGG - tig0033031:28315-28334 Msa1450600:intron 40.0%
GACGAGTCCAATAATGTGTT+TGG + tig0033031:28406-28425 None:intergenic 40.0%
TTGGACTCGTCAATTGATCA+AGG - tig0033031:28415-28434 Msa1450600:intron 40.0%
TGTAACTGAAGATGGAATGG+TGG - tig0033031:28450-28469 Msa1450600:intron 40.0%
TCAAAGAGTAGTGATTCCTC+TGG - tig0033031:28613-28632 Msa1450600:CDS 40.0%
ACTTGTTTATGCAATGCCAG+AGG + tig0033031:28632-28651 None:intergenic 40.0%
GGTTATCTCGACAAAATCGA+TGG - tig0033031:28692-28711 Msa1450600:CDS 40.0%
CTAGTGCCAATGTATCGTAA+CGG + tig0033031:28736-28755 None:intergenic 40.0%
GACGCCTCATCAACTTCAAA+CGG - tig0033031:23296-23315 Msa1450600:three_prime_UTR 45.0%
GAATCAGAGCAAGTCCTTTG+AGG + tig0033031:23334-23353 None:intergenic 45.0%
GTGAGGAGGTAATGCCATAT+TGG + tig0033031:23356-23375 None:intergenic 45.0%
GAAGAGTAGCAAAAGTGAGG+AGG + tig0033031:23370-23389 None:intergenic 45.0%
!! AACGACGGTGTCGTAGATTT+GGG + tig0033031:23492-23511 None:intergenic 45.0%
!! AAACGACGGTGTCGTAGATT+TGG + tig0033031:23493-23512 None:intergenic 45.0%
AAGTGTCCGATTCTTCAAGG+CGG - tig0033031:23515-23534 Msa1450600:three_prime_UTR 45.0%
ACTGGAAAGCCATGGTGTAA+CGG + tig0033031:23546-23565 None:intergenic 45.0%
TGTCTCTCTCTCCCTGTATT+CGG - tig0033031:24120-24139 Msa1450600:intron 45.0%
TCTCTCCCTGTATTCGGAAT+TGG - tig0033031:24126-24145 Msa1450600:CDS 45.0%
CTCTCCCTGTATTCGGAATT+GGG - tig0033031:24127-24146 Msa1450600:CDS 45.0%
GTTAATTGACTGCTAGGTCG+GGG - tig0033031:24179-24198 Msa1450600:CDS 45.0%
CCGTGAACCAGTATTGTCAA+CGG + tig0033031:24336-24355 None:intergenic 45.0%
!! CCGTTGACAATACTGGTTCA+CGG - tig0033031:24333-24352 Msa1450600:CDS 45.0%
!! ATACTGGTTCACGGCTCAAT+AGG - tig0033031:24342-24361 Msa1450600:CDS 45.0%
ATTGAACCAGTAGGACCTCT+AGG - tig0033031:24435-24454 Msa1450600:intron 45.0%
GTTCAGCCGGTTGAATTGAA+CGG + tig0033031:24536-24555 None:intergenic 45.0%
GCATATCATACAGCAAAGCG+TGG - tig0033031:24890-24909 Msa1450600:intron 45.0%
ATCATACAGCAAAGCGTGGA+TGG - tig0033031:24894-24913 Msa1450600:intron 45.0%
GTTGTTGTCAGTAATCACCG+AGG - tig0033031:24920-24939 Msa1450600:intron 45.0%
GTCAGTAATCACCGAGGATT+TGG - tig0033031:24926-24945 Msa1450600:intron 45.0%
AGTAATCACCGAGGATTTGG+AGG - tig0033031:24929-24948 Msa1450600:intron 45.0%
TTGGAACACCTCCAAATCCT+CGG + tig0033031:24940-24959 None:intergenic 45.0%
GCAGGATAACTAACCGTGAT+TGG + tig0033031:24959-24978 None:intergenic 45.0%
!! CTACAATTCTGGATGGACTG+AGG - tig0033031:25202-25221 Msa1450600:CDS 45.0%
AGAACCCCCAATTTGTCAGA+GGG - tig0033031:25799-25818 Msa1450600:intron 45.0%
CTTTCCCTCTGACAAATTGG+GGG + tig0033031:25806-25825 None:intergenic 45.0%
GCTTTCCCTCTGACAAATTG+GGG + tig0033031:25807-25826 None:intergenic 45.0%
GGTGAAAATACTCCTGTAGC+TGG - tig0033031:26386-26405 Msa1450600:intron 45.0%
TGTAGCTGTTTGCTCTCCAT+GGG - tig0033031:26412-26431 Msa1450600:intron 45.0%
GCAGGCATACATGGAAATGT+TGG - tig0033031:26594-26613 Msa1450600:intron 45.0%
CTGGTGTCTGCAGTGAATAT+TGG + tig0033031:27082-27101 None:intergenic 45.0%
! GCACACACCATTTGAGATTG+TGG + tig0033031:27431-27450 None:intergenic 45.0%
GCTTCTCTGTATTAGTGCTC+TGG - tig0033031:27734-27753 Msa1450600:intron 45.0%
!! GGTCATCTGGCTTTCTTTGA+AGG - tig0033031:27935-27954 Msa1450600:intron 45.0%
! GGATAACTGCATCTAGCCTT+TGG - tig0033031:27957-27976 Msa1450600:intron 45.0%
! TGAAGGGCAGCTAAAAGCAT+TGG + tig0033031:28032-28051 None:intergenic 45.0%
ATTTACTTGCCTGTTGCAGG+TGG - tig0033031:28158-28177 Msa1450600:intron 45.0%
TTTACTTGCCTGTTGCAGGT+GGG - tig0033031:28159-28178 Msa1450600:intron 45.0%
CCAAGATAGTACAGGGCAAA+AGG + tig0033031:28306-28325 None:intergenic 45.0%
! CCTTTTGCCCTGTACTATCT+TGG - tig0033031:28303-28322 Msa1450600:intron 45.0%
ATTAACGGTGATGCTGATGC+AGG - tig0033031:28372-28391 Msa1450600:intron 45.0%
! TTCTTCTGGTTGCCTGTTGT+TGG + tig0033031:28493-28512 None:intergenic 45.0%
TTTGTCGAGATAACCAGCGT+AGG + tig0033031:28687-28706 None:intergenic 45.0%
CGTTACGATACATTGGCACT+AGG - tig0033031:28734-28753 Msa1450600:CDS 45.0%
!! AAATTAAATTAAATTATAGT+GGG - tig0033031:24798-24817 Msa1450600:intron 5.0%
!! TATAAAAAATAATAATTGAA+GGG + tig0033031:28048-28067 None:intergenic 5.0%
!! TTATAAAAAATAATAATTGA+AGG + tig0033031:28049-28068 None:intergenic 5.0%
GCGGATATTCCGTTACACCA+TGG - tig0033031:23534-23553 Msa1450600:three_prime_UTR 50.0%
AGATGAGGACTGGAAAGCCA+TGG + tig0033031:23554-23573 None:intergenic 50.0%
CACGACACTTCTGATCGTGT+TGG + tig0033031:23701-23720 None:intergenic 50.0%
!! TGATGGTGGAACCCTTGCTT+TGG - tig0033031:23799-23818 Msa1450600:intron 50.0%
GAACAATGCATTGAACCGGC+AGG - tig0033031:24233-24252 Msa1450600:intron 50.0%
CTATGACCTAGAGGTCCTAC+TGG + tig0033031:24444-24463 None:intergenic 50.0%
GCCGGTTGAATTGAACGGTT+TGG + tig0033031:24531-24550 None:intergenic 50.0%
ATTCAACCGGCTGAACCGTT+TGG - tig0033031:24540-24559 Msa1450600:CDS 50.0%
ACTGAACCAAACGGTTCAGC+CGG + tig0033031:24549-24568 None:intergenic 50.0%
TCTCCACAGAGAGAATCCCA+AGG - tig0033031:25247-25266 Msa1450600:intron 50.0%
CTTAAAGCGAGCAGAGGCAA+TGG + tig0033031:25746-25765 None:intergenic 50.0%
CATTGCCTCTGCTCGCTTTA+AGG - tig0033031:25744-25763 Msa1450600:intron 50.0%
GAGAACCCCCAATTTGTCAG+AGG - tig0033031:25798-25817 Msa1450600:intron 50.0%
GTTGTTGGGCGAAATTCACG+TGG - tig0033031:26002-26021 Msa1450600:intron 50.0%
CTGTAGCTGTTTGCTCTCCA+TGG - tig0033031:26411-26430 Msa1450600:intron 50.0%
! TTGCTCTCCATGGGACCTTT+TGG - tig0033031:26421-26440 Msa1450600:intron 50.0%
GAAGGAAAGGCAGGCATACA+TGG - tig0033031:26585-26604 Msa1450600:intron 50.0%
CAAGGCGAGTAAATTGAGGC+TGG + tig0033031:27101-27120 None:intergenic 50.0%
ACTCGCCTTGCTAATTGGGA+AGG - tig0033031:27111-27130 Msa1450600:intron 50.0%
CTCATACTTCCCAACCATGC+GGG + tig0033031:27560-27579 None:intergenic 50.0%
CCTCATACTTCCCAACCATG+CGG + tig0033031:27561-27580 None:intergenic 50.0%
TTCATCCCAGGGAATGGCTT+CGG + tig0033031:27778-27797 None:intergenic 50.0%
CTTGCATTCATCCCAGGGAA+TGG + tig0033031:27784-27803 None:intergenic 50.0%
TCCCTGGGATGAATGCAAGT+AGG - tig0033031:27785-27804 Msa1450600:intron 50.0%
GCCTACTTGCATTCATCCCA+GGG + tig0033031:27789-27808 None:intergenic 50.0%
AGCCTACTTGCATTCATCCC+AGG + tig0033031:27790-27809 None:intergenic 50.0%
TTGAACGACGAGCCAACAAC+AGG - tig0033031:28478-28497 Msa1450600:CDS 50.0%
! TGATGAGGCGTCCAGTTCCA+TGG + tig0033031:23288-23307 None:intergenic 55.0%
! GTGGAACCCTTGCTTTGGAC+TGG - tig0033031:23804-23823 Msa1450600:intron 55.0%
ATTGAACCGGCAGGACCTCT+AGG - tig0033031:24242-24261 Msa1450600:intron 55.0%
CTATGACCTAGAGGTCCTGC+CGG + tig0033031:24251-24270 None:intergenic 55.0%
GATTCAAAGGCCTCGCCTGT+TGG + tig0033031:24391-24410 None:intergenic 55.0%
GACTGAGGATACTCGCACAG+TGG - tig0033031:25217-25236 Msa1450600:CDS 55.0%
ACAGCTACAGCTCCAGCTAC+AGG + tig0033031:26401-26420 None:intergenic 55.0%
ATCATGCCACCCGCATGGTT+GGG - tig0033031:27548-27567 Msa1450600:intron 55.0%
ATACTTCCCAACCATGCGGG+TGG + tig0033031:27557-27576 None:intergenic 55.0%
! CCGCATGGTTGGGAAGTATG+AGG - tig0033031:27558-27577 Msa1450600:intron 55.0%
ATGGCTTCGGTGGTACAGAC+AGG + tig0033031:27765-27784 None:intergenic 55.0%
TACCACCGAAGCCATTCCCT+GGG - tig0033031:27770-27789 Msa1450600:intron 55.0%
AGCTCTTACCCACCTGCAAC+AGG + tig0033031:28170-28189 None:intergenic 55.0%
GCGCCTTGGGATTCTCTCTG+TGG + tig0033031:25253-25272 None:intergenic 60.0%
TGACGATCATGCCACCCGCA+TGG - tig0033031:27543-27562 Msa1450600:intron 60.0%
GATCATGCCACCCGCATGGT+TGG - tig0033031:27547-27566 Msa1450600:intron 60.0%
GTACCACCGAAGCCATTCCC+TGG - tig0033031:27769-27788 Msa1450600:intron 60.0%
ATCCCAGGGAATGGCTTCGG+TGG + tig0033031:27775-27794 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0033031 gene 23211 28890 23211 ID=Msa1450600;Name=Msa1450600
tig0033031 mRNA 23211 28890 23211 ID=Msa1450600-mRNA-1;Parent=Msa1450600;Name=Msa1450600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=76|1|1|1|0.92|0.85|14|274|466
tig0033031 exon 23211 23411 23211 ID=Msa1450600-mRNA-1:exon:17569;Parent=Msa1450600-mRNA-1
tig0033031 exon 23506 23707 23506 ID=Msa1450600-mRNA-1:exon:17568;Parent=Msa1450600-mRNA-1
tig0033031 exon 23855 23924 23855 ID=Msa1450600-mRNA-1:exon:17567;Parent=Msa1450600-mRNA-1
tig0033031 exon 24123 24206 24123 ID=Msa1450600-mRNA-1:exon:17566;Parent=Msa1450600-mRNA-1
tig0033031 exon 24299 24429 24299 ID=Msa1450600-mRNA-1:exon:17565;Parent=Msa1450600-mRNA-1
tig0033031 exon 24522 24578 24522 ID=Msa1450600-mRNA-1:exon:17564;Parent=Msa1450600-mRNA-1
tig0033031 exon 24958 25006 24958 ID=Msa1450600-mRNA-1:exon:17563;Parent=Msa1450600-mRNA-1
tig0033031 exon 25157 25242 25157 ID=Msa1450600-mRNA-1:exon:17562;Parent=Msa1450600-mRNA-1
tig0033031 exon 25659 25736 25659 ID=Msa1450600-mRNA-1:exon:17561;Parent=Msa1450600-mRNA-1
tig0033031 exon 26788 26910 26788 ID=Msa1450600-mRNA-1:exon:17560;Parent=Msa1450600-mRNA-1
tig0033031 exon 27137 27226 27137 ID=Msa1450600-mRNA-1:exon:17559;Parent=Msa1450600-mRNA-1
tig0033031 exon 28038 28138 28038 ID=Msa1450600-mRNA-1:exon:17558;Parent=Msa1450600-mRNA-1
tig0033031 exon 28259 28320 28259 ID=Msa1450600-mRNA-1:exon:17557;Parent=Msa1450600-mRNA-1
tig0033031 exon 28474 28890 28474 ID=Msa1450600-mRNA-1:exon:17556;Parent=Msa1450600-mRNA-1
tig0033031 five_prime_UTR 28815 28890 28815 ID=Msa1450600-mRNA-1:five_prime_utr;Parent=Msa1450600-mRNA-1
tig0033031 CDS 28474 28814 28474 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 28259 28320 28259 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 28038 28138 28038 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 27137 27226 27137 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 26788 26910 26788 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 25659 25736 25659 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 25157 25242 25157 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 24958 25006 24958 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 24522 24578 24522 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 24299 24429 24299 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 24123 24206 24123 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 23855 23924 23855 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 CDS 23579 23707 23579 ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1
tig0033031 three_prime_UTR 23506 23578 23506 ID=Msa1450600-mRNA-1:three_prime_utr;Parent=Msa1450600-mRNA-1
tig0033031 three_prime_UTR 23211 23411 23211 ID=Msa1450600-mRNA-1:three_prime_utr;Parent=Msa1450600-mRNA-1
Gene Sequence

>Msa1450600

ATGGAACTGGACGCCTCATCAACTTCAAACGGTTACTTGTTCATCCTCAAAGGACTTGCTCTGATTCCAATATGGCATTACCTCCTCACTTTTGCTACTCTTCTCACATGTTTTCTCTACAATTTCCTTGAAATCCATTTCATCCAAGACTTATTCACTGGATTCACAGCTTCTCCCGTTCAGTTCAGTTACAACTCTTGTTCCCAAATCTACGACACCGTCGTTTCAAAGTGTCCGATTCTTCAAGGCGGATATTCCGTTACACCATGGCTTTCCAGTCCTCATCTTCAAACCATTTTCCTCAACTTCTTTGGAAATGCTCCATCTTTCAAATACAAAAGACAATTATTTACTACTTCTGATGGTGGAACCCTTGCTTTGGACTGGATAACAAGTTCTGATGTTTCTGGCAGTGTTCACCATGACGATAATGTTGTTGCTAAAGATGATTCTACTCCTATTGTTATTTGTATTCCTGGTTTAACAAGTGATTCTTCATCTCCTTATCTCAAACATCTTGCATATCATACAGCAAAGCGTGGATGGAAAGTTGTTGTCAGTAATCACCGAGGATTTGGAGGTGTTCCAATCACGTCTGATTGTTTCTACAATTCTGGATGGACTGAGGATACTCGCACAGTGGTTAACTATCTCCACAGAGAGAATCCCAAGGCGCCTTTGTTTATTGTTGGCACAAGTATCGGAGCTAATATTCTGGTAAAATATCTTGGTGAGGATGGTGAAAATACTCCTGTAGCTGGAGCTGTAGCTGTTTGCTCTCCATGGGACCTTTTGATAGCGGATAGATTTATAAGCCGTGCTCCTGTGCAAAAGTTTTATAATAAAGCACTGGCAGGTGGACAAAAAGATTATGCAAAATTACACCAGCCTCAATTTACTCGCCTTGCTAATTGGGAAGGAATAGAAAAGGCACTTTCTGTTAGAGATTTTGACGATCATGCCACCCGCATGGTTGGGAAGTATGAGACTGTTGATACGTACTATAGACGCAGCAGCAGTTCTACTTACGTGCAATCTGTATCGGTTCCGCTTCTCTGTATTAGTGCTCTGGATGATCCTGTCTGTACCACCGAAGCCATTCCCTGGGATGAATGCAAGGCAAATAAAAATATTGTGTTAGCTACTTTAAAACATGGAGGTCATCTGGCTTTCTTTGAAGGGATAACTGCATCTAGCCTTTGGTGGGTAAGAGCTACTAATGAATTTCTTGGTGTACTACACTCTAGCCATTATATGCATGAACAAAAGAAGGTCTCTACACCAAACACATTATTGGACTCGTCAATTGATCAAGGCCCTTATATCAATGTAACTGAAGATGGAATGGTGGCTGCATTGAACGACGAGCCAACAACAGGCAACCAGAAGAAATACATGTAA

Protein sequence

>Msa1450600

MELDASSTSNGYLFILKGLALIPIWHYLLTFATLLTCFLYNFLEIHFIQDLFTGFTASPVQFSYNSCSQIYDTVVSKCPILQGGYSVTPWLSSPHLQTIFLNFFGNAPSFKYKRQLFTTSDGGTLALDWITSSDVSGSVHHDDNVVAKDDSTPIVICIPGLTSDSSSPYLKHLAYHTAKRGWKVVVSNHRGFGGVPITSDCFYNSGWTEDTRTVVNYLHRENPKAPLFIVGTSIGANILVKYLGEDGENTPVAGAVAVCSPWDLLIADRFISRAPVQKFYNKALAGGQKDYAKLHQPQFTRLANWEGIEKALSVRDFDDHATRMVGKYETVDTYYRRSSSSTYVQSVSVPLLCISALDDPVCTTEAIPWDECKANKNIVLATLKHGGHLAFFEGITASSLWWVRATNEFLGVLHSSHYMHEQKKVSTPNTLLDSSIDQGPYINVTEDGMVAALNDEPTTGNQKKYM*