Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450600 | sp|Q40863|EMB8_PICGL | 35.417 | 384 | 222 | 7 | 49 | 417 | 49 | 421 | 2.88e-61 | 209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450600 | G7IAG0 | 96.137 | 466 | 18 | 0 | 1 | 466 | 1 | 466 | 0.0 | 940 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0789850 | Msa1450600 | 0.858501 | 7.887903e-63 | -8.615850e-47 |
Msa0131350 | Msa1450600 | 0.923309 | 3.145401e-89 | -8.615850e-47 |
Msa0232030 | Msa1450600 | 0.803122 | 4.053165e-49 | -8.615850e-47 |
Msa0465810 | Msa1450600 | 0.825215 | 5.292754e-54 | -8.615850e-47 |
Msa0358280 | Msa1450600 | 0.821206 | 4.566521e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450600 | MtrunA17_Chr1g0200381 | 96.137 | 466 | 18 | 0 | 1 | 466 | 1 | 466 | 0.0 | 940 |
Msa1450600 | MtrunA17_Chr1g0200391 | 77.333 | 450 | 96 | 1 | 12 | 461 | 19 | 462 | 0.0 | 736 |
Msa1450600 | MtrunA17_Chr4g0021061 | 38.562 | 306 | 173 | 4 | 95 | 397 | 96 | 389 | 4.77e-62 | 208 |
Msa1450600 | MtrunA17_Chr4g0070031 | 27.600 | 250 | 165 | 3 | 110 | 356 | 142 | 378 | 2.70e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450600 | AT1G34340.1 | 63.124 | 461 | 167 | 1 | 2 | 459 | 3 | 463 | 0.0 | 607 |
Msa1450600 | AT5G49950.1 | 58.352 | 449 | 177 | 4 | 12 | 459 | 14 | 453 | 0.0 | 518 |
Msa1450600 | AT3G50790.2 | 36.137 | 321 | 188 | 5 | 95 | 410 | 76 | 384 | 5.09e-58 | 197 |
Msa1450600 | AT3G50790.1 | 36.137 | 321 | 188 | 5 | 95 | 410 | 76 | 384 | 5.09e-58 | 197 |
Msa1450600 | AT2G03140.12 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 8.38e-26 | 112 |
Msa1450600 | AT2G03140.3 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.8 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.10 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.9 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.5 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.7 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.1 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.4 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.11e-25 | 111 |
Msa1450600 | AT2G03140.2 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.17e-25 | 111 |
Msa1450600 | AT2G03140.6 | 27.072 | 362 | 234 | 8 | 110 | 460 | 168 | 510 | 1.84e-24 | 107 |
Find 127 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTTACTCGCCTTGCTAAT+TGG | 0.159411 | tig0033031:-24973 | Msa1450600:CDS |
CCTATTGTTATTTGTATTCC+TGG | 0.169023 | tig0033031:-28063 | Msa1450600:CDS |
TCTGATTGTTTCTACAATTC+TGG | 0.179820 | tig0033031:-26888 | Msa1450600:CDS |
TTCTATTTAAAAGATGTTAT+TGG | 0.183378 | tig0033031:-23285 | Msa1450600:three_prime_UTR |
TCCAAAGAAGTTGAGGAAAA+TGG | 0.218440 | tig0033031:+28500 | None:intergenic |
TTGATGTCAAAAGATGTTAT+TGG | 0.222802 | tig0033031:-23249 | Msa1450600:three_prime_UTR |
GTTCCATGGAAATTAGAATT+TGG | 0.229305 | tig0033031:+28808 | None:intergenic |
ACCTATTCTTTAGGAGAATC+TGG | 0.252656 | tig0033031:+23517 | None:intergenic |
TCTTCAGTTACATTGATATA+AGG | 0.256685 | tig0033031:+23640 | None:intergenic |
TTGCTCTCCATGGGACCTTT+TGG | 0.281889 | tig0033031:-25658 | Msa1450600:intron |
CTCTACACCAAACACATTAT+TGG | 0.282651 | tig0033031:-23683 | Msa1450600:CDS |
AAACGACGGTGTCGTAGATT+TGG | 0.288333 | tig0033031:+28589 | None:intergenic |
GTCAGTAATCACCGAGGATT+TGG | 0.307193 | tig0033031:-27153 | Msa1450600:CDS |
TTCTTCTGGTTGCCTGTTGT+TGG | 0.339938 | tig0033031:+23589 | None:intergenic |
TGATGGTGGAACCCTTGCTT+TGG | 0.342571 | tig0033031:-28280 | Msa1450600:CDS |
GGTCATCTGGCTTTCTTTGA+AGG | 0.342583 | tig0033031:-24144 | Msa1450600:CDS |
AATTCTAATTTCCATGGAAC+TGG | 0.357094 | tig0033031:-28805 | Msa1450600:exon |
AGTATTACATGTATTTCTTC+TGG | 0.363252 | tig0033031:+23575 | None:intergenic |
ATTTACTCGCCTTGCTAATT+GGG | 0.364057 | tig0033031:-24972 | Msa1450600:CDS |
TGAATAAGTCTTGGATGAAA+TGG | 0.366261 | tig0033031:+28658 | None:intergenic |
CTTCAGTTACATTGATATAA+GGG | 0.367631 | tig0033031:+23641 | None:intergenic |
AAGGCGCCTTTGTTTATTGT+TGG | 0.376066 | tig0033031:-26813 | Msa1450600:CDS |
AACGACGGTGTCGTAGATTT+GGG | 0.383118 | tig0033031:+28590 | None:intergenic |
CTGTAGCTGTTTGCTCTCCA+TGG | 0.384760 | tig0033031:-25668 | Msa1450600:CDS |
AGAGCTACTAATGAATTTCT+TGG | 0.395824 | tig0033031:-23895 | Msa1450600:CDS |
GACTTGCTCTGATTCCAATA+TGG | 0.401756 | tig0033031:-28740 | Msa1450600:CDS |
AGAAGAAATACATGTAATAC+TGG | 0.402181 | tig0033031:-23573 | Msa1450600:exon |
AACAATAAACAAAGGCGCCT+TGG | 0.406898 | tig0033031:+26815 | None:intergenic |
GAATATCCGCCTTGAAGAAT+CGG | 0.410833 | tig0033031:+28558 | None:intergenic |
GTGAGGAGGTAATGCCATAT+TGG | 0.413036 | tig0033031:+28726 | None:intergenic |
TTTAAAACATGGAGGTCATC+TGG | 0.416368 | tig0033031:-24157 | Msa1450600:CDS |
CTTGGATGAAATGGATTTCA+AGG | 0.423576 | tig0033031:+28667 | None:intergenic |
GCAGGATAACTAACCGTGAT+TGG | 0.426392 | tig0033031:+27123 | None:intergenic |
TATATCAATGTAACTGAAGA+TGG | 0.429045 | tig0033031:-23637 | Msa1450600:CDS |
ACAATAAACAAAGGCGCCTT+GGG | 0.429506 | tig0033031:+26816 | None:intergenic |
TGTTTGCAGGTAAAATATCT+TGG | 0.431469 | tig0033031:-25723 | Msa1450600:intron |
GCTTCTCTGTATTAGTGCTC+TGG | 0.434351 | tig0033031:-24345 | Msa1450600:CDS |
CCAGGAATACAAATAACAAT+AGG | 0.434889 | tig0033031:+28063 | None:intergenic |
ATCATGCCACCCGCATGGTT+GGG | 0.442530 | tig0033031:-24531 | Msa1450600:CDS |
TTCATCCCAGGGAATGGCTT+CGG | 0.453042 | tig0033031:+24304 | None:intergenic |
TTCATCCAAGACTTATTCAC+TGG | 0.455099 | tig0033031:-28654 | Msa1450600:CDS |
GGATAACTGCATCTAGCCTT+TGG | 0.463957 | tig0033031:-24122 | Msa1450600:intron |
CTCCATCTTTCAAATACAAA+AGG | 0.467859 | tig0033031:-28473 | Msa1450600:intron |
AGCCTACTTGCATTCATCCC+AGG | 0.469700 | tig0033031:+24292 | None:intergenic |
AATCCAAATTCTAATTTCCA+TGG | 0.469773 | tig0033031:-28811 | Msa1450600:exon |
GATCATGCCACCCGCATGGT+TGG | 0.470851 | tig0033031:-24532 | Msa1450600:CDS |
TCAAAGTGTCCGATTCTTCA+AGG | 0.472302 | tig0033031:-28567 | Msa1450600:CDS |
AGGAAAATGGTTTGAAGATG+AGG | 0.476049 | tig0033031:+28513 | None:intergenic |
GACGAGTCCAATAATGTGTT+TGG | 0.477090 | tig0033031:+23676 | None:intergenic |
GAATCAGAGCAAGTCCTTTG+AGG | 0.477461 | tig0033031:+28748 | None:intergenic |
GAGTTGTAACTGAACTGAAC+GGG | 0.481580 | tig0033031:+28618 | None:intergenic |
GTGGAACCCTTGCTTTGGAC+TGG | 0.482761 | tig0033031:-28275 | Msa1450600:CDS |
TTTATTGTTGGCACAAGTAT+CGG | 0.485344 | tig0033031:-26801 | Msa1450600:CDS |
CAATTATTTACTACTTCTGA+TGG | 0.485455 | tig0033031:-28297 | Msa1450600:CDS |
TCTGTTCTGTTCTGTTGAAG+TGG | 0.492578 | tig0033031:+28843 | None:intergenic |
GTAAAATATCTTGGTGAGGA+TGG | 0.494269 | tig0033031:-25714 | Msa1450600:CDS |
TACTTACGTGCAATCTGTAT+CGG | 0.494891 | tig0033031:-24372 | Msa1450600:CDS |
AAGTATCGGAGCTAATATTC+TGG | 0.498735 | tig0033031:-26787 | Msa1450600:intron |
TTGAACGACGAGCCAACAAC+AGG | 0.498890 | tig0033031:-23601 | Msa1450600:CDS |
CTTGCATTCATCCCAGGGAA+TGG | 0.502258 | tig0033031:+24298 | None:intergenic |
TTGGACTCGTCAATTGATCA+AGG | 0.502387 | tig0033031:-23664 | Msa1450600:CDS |
GTACCACCGAAGCCATTCCC+TGG | 0.506706 | tig0033031:-24310 | Msa1450600:CDS |
ATCATACAGCAAAGCGTGGA+TGG | 0.507999 | tig0033031:-27185 | Msa1450600:CDS |
GACGCCTCATCAACTTCAAA+CGG | 0.510689 | tig0033031:-28783 | Msa1450600:CDS |
ACAGCTACAGCTCCAGCTAC+AGG | 0.515335 | tig0033031:+25681 | None:intergenic |
GTCATCTGGCTTTCTTTGAA+GGG | 0.517450 | tig0033031:-24143 | Msa1450600:CDS |
TGTAGCTGTTTGCTCTCCAT+GGG | 0.521893 | tig0033031:-25667 | Msa1450600:CDS |
GGTGAAAATACTCCTGTAGC+TGG | 0.527326 | tig0033031:-25693 | Msa1450600:CDS |
ATGGCTTCGGTGGTACAGAC+AGG | 0.528211 | tig0033031:+24317 | None:intergenic |
ATTGTTTCTACAATTCTGGA+TGG | 0.529663 | tig0033031:-26884 | Msa1450600:CDS |
ACTCGCCTTGCTAATTGGGA+AGG | 0.533476 | tig0033031:-24968 | Msa1450600:CDS |
TCCAGATTCTCCTAAAGAAT+AGG | 0.533539 | tig0033031:-23518 | Msa1450600:three_prime_UTR |
TGATGAGGCGTCCAGTTCCA+TGG | 0.535507 | tig0033031:+28794 | None:intergenic |
TTATATGCATGAACAAAAGA+AGG | 0.538820 | tig0033031:-23854 | Msa1450600:intron |
AATGGTTTGAAGATGAGGAC+TGG | 0.540210 | tig0033031:+28518 | None:intergenic |
GAGCATTTCCAAAGAAGTTG+AGG | 0.547086 | tig0033031:+28493 | None:intergenic |
ATTTGGAGGTGTTCCAATCA+CGG | 0.548433 | tig0033031:-27136 | Msa1450600:intron |
CGTTACGATACATTGGCACT+AGG | 0.548703 | tig0033031:-23345 | Msa1450600:three_prime_UTR |
TTATTTACTACTTCTGATGG+TGG | 0.549292 | tig0033031:-28294 | Msa1450600:CDS |
CTCATACTTCCCAACCATGC+GGG | 0.550717 | tig0033031:+24522 | None:intergenic |
CCGCATGGTTGGGAAGTATG+AGG | 0.551051 | tig0033031:-24521 | Msa1450600:intron |
CTATTCCTTCCCAATTAGCA+AGG | 0.554281 | tig0033031:+24963 | None:intergenic |
GACTGGATAACAAGTTCTGA+TGG | 0.559300 | tig0033031:-28258 | Msa1450600:intron |
TGAATCCAGTGAATAAGTCT+TGG | 0.562530 | tig0033031:+28649 | None:intergenic |
TTGTTATCCAGTCCAAAGCA+AGG | 0.568743 | tig0033031:+28268 | None:intergenic |
AGTAATCACCGAGGATTTGG+AGG | 0.570968 | tig0033031:-27150 | Msa1450600:CDS |
GCCTACTTGCATTCATCCCA+GGG | 0.576549 | tig0033031:+24293 | None:intergenic |
TTACTAACCAAAAGGTCCCA+TGG | 0.579056 | tig0033031:+25651 | None:intergenic |
TAGCAACAACATTATCGTCA+TGG | 0.582836 | tig0033031:+28100 | None:intergenic |
CAATGTAACTGAAGATGGAA+TGG | 0.584166 | tig0033031:-23632 | Msa1450600:CDS |
GGTTACTTGTTCATCCTCAA+AGG | 0.584179 | tig0033031:-28762 | Msa1450600:CDS |
ACTGGAAAGCCATGGTGTAA+CGG | 0.586849 | tig0033031:+28536 | None:intergenic |
TACCACCGAAGCCATTCCCT+GGG | 0.588284 | tig0033031:-24309 | Msa1450600:CDS |
GTGTTAGCTACTTTAAAACA+TGG | 0.590159 | tig0033031:-24168 | Msa1450600:CDS |
TGACGATCATGCCACCCGCA+TGG | 0.590304 | tig0033031:-24536 | Msa1450600:CDS |
CAAGGCGAGTAAATTGAGGC+TGG | 0.594294 | tig0033031:+24981 | None:intergenic |
TATAATAAAGCACTGGCAGG+TGG | 0.596101 | tig0033031:-25178 | Msa1450600:CDS |
TTGGAACACCTCCAAATCCT+CGG | 0.607876 | tig0033031:+27142 | None:intergenic |
ATCCCAGGGAATGGCTTCGG+TGG | 0.609768 | tig0033031:+24307 | None:intergenic |
TAATTGGGAAGGAATAGAAA+AGG | 0.611433 | tig0033031:-24957 | Msa1450600:intron |
TTAGCAAGGCGAGTAAATTG+AGG | 0.613735 | tig0033031:+24977 | None:intergenic |
ATATTGCCGTTACGATACAT+TGG | 0.615642 | tig0033031:-23352 | Msa1450600:three_prime_UTR |
AGAGTTGTAACTGAACTGAA+CGG | 0.619759 | tig0033031:+28617 | None:intergenic |
TGTTATCCAGTCCAAAGCAA+GGG | 0.621323 | tig0033031:+28269 | None:intergenic |
CTACAATTCTGGATGGACTG+AGG | 0.627761 | tig0033031:-26877 | Msa1450600:CDS |
GAAGAGTAGCAAAAGTGAGG+AGG | 0.629834 | tig0033031:+28712 | None:intergenic |
GCAGGTAAAATATCTTGGTG+AGG | 0.631080 | tig0033031:-25718 | Msa1450600:intron |
GCGCCTTGGGATTCTCTCTG+TGG | 0.635002 | tig0033031:+26829 | None:intergenic |
ATACTTCCCAACCATGCGGG+TGG | 0.645678 | tig0033031:+24525 | None:intergenic |
GGTTATCTCGACAAAATCGA+TGG | 0.646602 | tig0033031:-23387 | Msa1450600:three_prime_UTR |
TGAGAAGAGTAGCAAAAGTG+AGG | 0.646619 | tig0033031:+28709 | None:intergenic |
GTAACCGTTTGAAGTTGATG+AGG | 0.648261 | tig0033031:+28779 | None:intergenic |
CTAGTGCCAATGTATCGTAA+CGG | 0.654312 | tig0033031:+23346 | None:intergenic |
GCGGATATTCCGTTACACCA+TGG | 0.661428 | tig0033031:-28545 | Msa1450600:CDS |
CCTCATACTTCCCAACCATG+CGG | 0.669193 | tig0033031:+24521 | None:intergenic |
AGAGCACTAATACAGAGAAG+CGG | 0.669736 | tig0033031:+24347 | None:intergenic |
GCATATCATACAGCAAAGCG+TGG | 0.679163 | tig0033031:-27189 | Msa1450600:CDS |
GACTGAGGATACTCGCACAG+TGG | 0.682605 | tig0033031:-26862 | Msa1450600:CDS |
AATCGGACACTTTGAAACGA+CGG | 0.687644 | tig0033031:+28575 | None:intergenic |
CTTGTGCCAACAATAAACAA+AGG | 0.691706 | tig0033031:+26807 | None:intergenic |
GAAGAATCACTTGTTAAACC+AGG | 0.692103 | tig0033031:+28045 | None:intergenic |
TGTAACTGAAGATGGAATGG+TGG | 0.707476 | tig0033031:-23629 | Msa1450600:CDS |
TTAGCTACTTTAAAACATGG+AGG | 0.710037 | tig0033031:-24165 | Msa1450600:CDS |
AGATGAGGACTGGAAAGCCA+TGG | 0.717732 | tig0033031:+28528 | None:intergenic |
TCTCCACAGAGAGAATCCCA+AGG | 0.738420 | tig0033031:-26832 | Msa1450600:CDS |
AAGTGTCCGATTCTTCAAGG+CGG | 0.747552 | tig0033031:-28564 | Msa1450600:CDS |
GTTGTTGTCAGTAATCACCG+AGG | 0.777365 | tig0033031:-27159 | Msa1450600:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAATTAAATTAAATTATAG+TGG | - | tig0033031:24797-24816 | Msa1450600:intron | 10.0% |
!! | AAAAAATAACAAAACAAATA+GGG | - | tig0033031:25889-25908 | Msa1450600:intron | 10.0% |
!! | ATTAAATCTTAGTAGTTTAT+TGG | - | tig0033031:23746-23765 | Msa1450600:intron | 15.0% |
!!! | TTATTAAAACATTGATTCAA+AGG | + | tig0033031:24211-24230 | None:intergenic | 15.0% |
!! | TAATAAACGTGTTATAATAA+GGG | + | tig0033031:24744-24763 | None:intergenic | 15.0% |
!! | TTAATAAACGTGTTATAATA+AGG | + | tig0033031:24745-24764 | None:intergenic | 15.0% |
!!! | ATGTATGTTTGTATTAATTT+TGG | - | tig0033031:25664-25683 | Msa1450600:CDS | 15.0% |
!! | GAAAAAATAACAAAACAAAT+AGG | - | tig0033031:25888-25907 | Msa1450600:intron | 15.0% |
!! | AAAAATTTAAGCATTAACAT+AGG | + | tig0033031:26170-26189 | None:intergenic | 15.0% |
!! | AATCTATTTGATATAATCTA+TGG | - | tig0033031:26730-26749 | Msa1450600:intron | 15.0% |
!!! | ATATTAAATGTAATTAGTCT+AGG | - | tig0033031:27288-27307 | Msa1450600:intron | 15.0% |
!! | ATACGAGAAAAATTTAATAT+CGG | + | tig0033031:27598-27617 | None:intergenic | 15.0% |
!!! | TTTCATTTGTTTTATAATAG+CGG | + | tig0033031:28134-28153 | None:intergenic | 15.0% |
!! | TTCTATTTAAAAGATGTTAT+TGG | - | tig0033031:28794-28813 | Msa1450600:CDS | 15.0% |
!! | TTTAAGTATTTAGTGCTAAA+AGG | - | tig0033031:24602-24621 | Msa1450600:intron | 20.0% |
!! | AAGTATATCTTAATCTAAAG+TGG | + | tig0033031:25071-25090 | None:intergenic | 20.0% |
!! | TTAAGAATTTACATTACTAG+AGG | + | tig0033031:25157-25176 | None:intergenic | 20.0% |
!! | TGTATGTGATTGTATTTATA+TGG | + | tig0033031:25434-25453 | None:intergenic | 20.0% |
!!! | TACTTGAATGTTTTTTTTCA+TGG | - | tig0033031:25539-25558 | Msa1450600:intron | 20.0% |
!! | TTAAAACACACTACTTTATT+TGG | + | tig0033031:26107-26126 | None:intergenic | 20.0% |
!! | AATACTATTTACTAACCAAA+AGG | + | tig0033031:26439-26458 | None:intergenic | 20.0% |
!! | TTATGTACATTAGTAAATGT+CGG | + | tig0033031:26505-26524 | None:intergenic | 20.0% |
!! | CTTTCCTTCTAATTTAAATT+GGG | + | tig0033031:26574-26593 | None:intergenic | 20.0% |
!!! | TTATTATAAAACTTTTGCAC+AGG | + | tig0033031:26889-26908 | None:intergenic | 20.0% |
!!! | AAAGTTTTATAATAAAGCAC+TGG | - | tig0033031:26894-26913 | Msa1450600:intron | 20.0% |
!! | TAAAAAAACTAGAAAGATAG+AGG | + | tig0033031:26953-26972 | None:intergenic | 20.0% |
!! | AAAAATGAATAGCAACTATT+TGG | + | tig0033031:27356-27375 | None:intergenic | 20.0% |
!! | TACGAGAAAAATTTAATATC+GGG | + | tig0033031:27597-27616 | None:intergenic | 20.0% |
!! | AAAGAGTAACACATTAAAAT+GGG | + | tig0033031:27869-27888 | None:intergenic | 20.0% |
!! | AAAAGAGTAACACATTAAAA+TGG | + | tig0033031:27870-27889 | None:intergenic | 20.0% |
!! | GAATATATTATAACCAATCA+AGG | + | tig0033031:28100-28119 | None:intergenic | 20.0% |
!!! | TCTTTTTTAACCTATTCTTT+AGG | + | tig0033031:28574-28593 | None:intergenic | 20.0% |
!! | AAAGAATAGGTTAAAAAAGA+TGG | - | tig0033031:28574-28593 | Msa1450600:CDS | 20.0% |
!!! | AGAAATGAATTTTATTAGAG+AGG | + | tig0033031:28778-28797 | None:intergenic | 20.0% |
!!! | AAGTGGTTTTGAATTTTGAT+AGG | + | tig0033031:23222-23241 | None:intergenic | 25.0% |
! | AATCCAAATTCTAATTTCCA+TGG | - | tig0033031:23268-23287 | Msa1450600:three_prime_UTR | 25.0% |
! | AGAATGAAAATGTGAAATGA+CGG | + | tig0033031:23638-23657 | None:intergenic | 25.0% |
! | CAATTATTTACTACTTCTGA+TGG | - | tig0033031:23782-23801 | Msa1450600:intron | 25.0% |
! | ATGATACACAAAAATCTGAA+AGG | + | tig0033031:23930-23949 | None:intergenic | 25.0% |
! | CATTATTATGTTACAGTTTC+TGG | - | tig0033031:23947-23966 | Msa1450600:intron | 25.0% |
!! | CAAATAAACAAAAGCATGAT+AGG | + | tig0033031:24076-24095 | None:intergenic | 25.0% |
! | AGTCAATTAACTTCTAACTT+GGG | + | tig0033031:24170-24189 | None:intergenic | 25.0% |
!!! | TCATTAAAACGTTGATTCAA+AGG | + | tig0033031:24404-24423 | None:intergenic | 25.0% |
!!! | TTCACTTCTTTTTGTTGATT+AGG | - | tig0033031:24775-24794 | Msa1450600:intron | 25.0% |
!! | TCTATATATTTCTAACTTGC+AGG | + | tig0033031:24977-24996 | None:intergenic | 25.0% |
!! | TAAGATATACTTCCTTTTGT+TGG | - | tig0033031:25079-25098 | Msa1450600:intron | 25.0% |
! | GTATTTATATGGAAACTTCT+AGG | + | tig0033031:25423-25442 | None:intergenic | 25.0% |
!! | TTGAAAACAGTTTTTGATCA+AGG | + | tig0033031:25615-25634 | None:intergenic | 25.0% |
! | AATACAAACATACATGAACA+AGG | + | tig0033031:25659-25678 | None:intergenic | 25.0% |
!! | TTTCCATATTTTCTTCATGT+GGG | + | tig0033031:25872-25891 | None:intergenic | 25.0% |
!! | TTTTCCATATTTTCTTCATG+TGG | + | tig0033031:25873-25892 | None:intergenic | 25.0% |
!!! | ACACAGTTTTGGATTAATTA+TGG | + | tig0033031:25921-25940 | None:intergenic | 25.0% |
! | TTAACATAGGAGTTATACTT+CGG | + | tig0033031:26157-26176 | None:intergenic | 25.0% |
! | TTTACTTATGTTATGACCAT+TGG | - | tig0033031:26194-26213 | Msa1450600:intron | 25.0% |
! | GTAGTTTGAAAAGCAAATAT+AGG | + | tig0033031:26231-26250 | None:intergenic | 25.0% |
! | CCTTTCCTTCTAATTTAAAT+TGG | + | tig0033031:26575-26594 | None:intergenic | 25.0% |
! | CCAATTTAAATTAGAAGGAA+AGG | - | tig0033031:26572-26591 | Msa1450600:intron | 25.0% |
!!! | GTTTTTTTACTCATCTTTCT+AGG | - | tig0033031:26964-26983 | Msa1450600:intron | 25.0% |
! | TATAAAATACCAGAATGAAG+AGG | + | tig0033031:27262-27281 | None:intergenic | 25.0% |
!!! | TGCTATTCATTTTTATTCGT+TGG | - | tig0033031:27362-27381 | Msa1450600:intron | 25.0% |
!!! | AGAATAAGTCTTGTGTTTTA+AGG | + | tig0033031:27401-27420 | None:intergenic | 25.0% |
! | AGTGCATATATATTCTTTGT+AGG | - | tig0033031:27501-27520 | Msa1450600:intron | 25.0% |
!!! | TATTTTAGATAGCAGACATA+AGG | + | tig0033031:27637-27656 | None:intergenic | 25.0% |
! | TAACAAAATATTGAAGAGTC+AGG | + | tig0033031:28003-28022 | None:intergenic | 25.0% |
!! | TCTTTTGTTCATGCATATAA+TGG | + | tig0033031:28225-28244 | None:intergenic | 25.0% |
! | TTATATGCATGAACAAAAGA+AGG | - | tig0033031:28225-28244 | Msa1450600:intron | 25.0% |
! | CTTAATAAGCTTATTGACAA+AGG | - | tig0033031:28271-28290 | Msa1450600:CDS | 25.0% |
!! | ACTACTGTTTTCTCTATTAA+CGG | - | tig0033031:28357-28376 | Msa1450600:intron | 25.0% |
! | CTTCAGTTACATTGATATAA+GGG | + | tig0033031:28441-28460 | None:intergenic | 25.0% |
! | TCTTCAGTTACATTGATATA+AGG | + | tig0033031:28442-28461 | None:intergenic | 25.0% |
! | TATATCAATGTAACTGAAGA+TGG | - | tig0033031:28442-28461 | Msa1450600:intron | 25.0% |
! | AGTATTACATGTATTTCTTC+TGG | + | tig0033031:28507-28526 | None:intergenic | 25.0% |
! | AGAAGAAATACATGTAATAC+TGG | - | tig0033031:28506-28525 | Msa1450600:CDS | 25.0% |
!! | AATTTTATTAGAGAGGAAAG+AGG | + | tig0033031:28771-28790 | None:intergenic | 25.0% |
! | TTGATGTCAAAAGATGTTAT+TGG | - | tig0033031:28830-28849 | Msa1450600:five_prime_UTR | 25.0% |
GTTCCATGGAAATTAGAATT+TGG | + | tig0033031:23274-23293 | None:intergenic | 30.0% | |
AATTCTAATTTCCATGGAAC+TGG | - | tig0033031:23274-23293 | Msa1450600:three_prime_UTR | 30.0% | |
TGAATAAGTCTTGGATGAAA+TGG | + | tig0033031:23424-23443 | None:intergenic | 30.0% | |
CTCCATCTTTCAAATACAAA+AGG | - | tig0033031:23606-23625 | Msa1450600:CDS | 30.0% | |
! | GACCTTTTGTATTTGAAAGA+TGG | + | tig0033031:23611-23630 | None:intergenic | 30.0% |
GATGCATATACAACAAGAAA+AGG | + | tig0033031:23664-23683 | None:intergenic | 30.0% | |
TTATTTACTACTTCTGATGG+TGG | - | tig0033031:23785-23804 | Msa1450600:intron | 30.0% | |
CCAGGAATACAAATAACAAT+AGG | + | tig0033031:24019-24038 | None:intergenic | 30.0% | |
!! | CCTATTGTTATTTGTATTCC+TGG | - | tig0033031:24016-24035 | Msa1450600:intron | 30.0% |
!! | CATGCTTTTGTTTATTTGTG+TGG | - | tig0033031:24078-24097 | Msa1450600:intron | 30.0% |
CAGTCAATTAACTTCTAACT+TGG | + | tig0033031:24171-24190 | None:intergenic | 30.0% | |
TTAGAAGTTAATTGACTGCT+AGG | - | tig0033031:24173-24192 | Msa1450600:CDS | 30.0% | |
GTTTGGTTATTTGAACAGTT+TGG | + | tig0033031:24314-24333 | None:intergenic | 30.0% | |
!! | AAACGTTGATTTATTCCAAC+AGG | - | tig0033031:24373-24392 | Msa1450600:CDS | 30.0% |
! | TTGAGTTGTAGTATTGTCAA+CGG | + | tig0033031:24494-24513 | None:intergenic | 30.0% |
AAAAATCGAACTGAACCAAA+CGG | + | tig0033031:24558-24577 | None:intergenic | 30.0% | |
CGTTAACAAAACAAGTCTAT+CGG | - | tig0033031:24642-24661 | Msa1450600:intron | 30.0% | |
TCGTTAATCGTTCATTTGTA+AGG | - | tig0033031:24677-24696 | Msa1450600:intron | 30.0% | |
! | GTGTTATAATAAGGGTACAA+GGG | + | tig0033031:24736-24755 | None:intergenic | 30.0% |
!! | AATTAAATTATAGTGGGCAG+TGG | - | tig0033031:24804-24823 | Msa1450600:intron | 30.0% |
! | TTTGAGATACTACAACGAAA+GGG | + | tig0033031:24864-24883 | None:intergenic | 30.0% |
TGCAATCTTCAAATAACCAT+TGG | - | tig0033031:25019-25038 | Msa1450600:intron | 30.0% | |
!!! | TCATAACGTTTTTTAGCCAA+TGG | + | tig0033031:25038-25057 | None:intergenic | 30.0% |
ATTGGCTAAAAAACGTTATG+AGG | - | tig0033031:25037-25056 | Msa1450600:intron | 30.0% | |
TAAAAAACGTTATGAGGTTG+TGG | - | tig0033031:25043-25062 | Msa1450600:intron | 30.0% | |
!! | TCTGATTGTTTCTACAATTC+TGG | - | tig0033031:25191-25210 | Msa1450600:CDS | 30.0% |
!! | ATTGTTTCTACAATTCTGGA+TGG | - | tig0033031:25195-25214 | Msa1450600:CDS | 30.0% |
TTTATTGTTGGCACAAGTAT+CGG | - | tig0033031:25278-25297 | Msa1450600:intron | 30.0% | |
CTAATATTCTGGTAAATTCG+TGG | - | tig0033031:25303-25322 | Msa1450600:intron | 30.0% | |
TTCTAGGTTTAGACTATTTG+AGG | + | tig0033031:25407-25426 | None:intergenic | 30.0% | |
AACACTGTAATTAAATCAGC+TGG | + | tig0033031:25483-25502 | None:intergenic | 30.0% | |
! | AGCTGATTTAATTACAGTGT+TGG | - | tig0033031:25482-25501 | Msa1450600:intron | 30.0% |
! | GCTGATTTAATTACAGTGTT+GGG | - | tig0033031:25483-25502 | Msa1450600:intron | 30.0% |
AGTAAAGATACAGATCAATG+TGG | + | tig0033031:25523-25542 | None:intergenic | 30.0% | |
TTGATCAAGGATTATGCATA+CGG | + | tig0033031:25602-25621 | None:intergenic | 30.0% | |
TTCTCTAGATAGTCATTACA+AGG | + | tig0033031:25783-25802 | None:intergenic | 30.0% | |
! | TCATCAAAAACACACAGTTT+TGG | + | tig0033031:25932-25951 | None:intergenic | 30.0% |
!!! | TCCAACACATTTTTTGTTGT+TGG | - | tig0033031:25987-26006 | Msa1450600:intron | 30.0% |
!!! | CCAACACATTTTTTGTTGTT+GGG | - | tig0033031:25988-26007 | Msa1450600:intron | 30.0% |
! | GATCCCATAACTTTAGAAAT+GGG | - | tig0033031:26024-26043 | Msa1450600:intron | 30.0% |
!! | GAACCCATTTCTAAAGTTAT+GGG | + | tig0033031:26030-26049 | None:intergenic | 30.0% |
ATGGATCTCATCTTCTATTT+GGG | + | tig0033031:26054-26073 | None:intergenic | 30.0% | |
TATGGATCTCATCTTCTATT+TGG | + | tig0033031:26055-26074 | None:intergenic | 30.0% | |
AATAGAAGATGAGATCCATA+TGG | - | tig0033031:26055-26074 | Msa1450600:intron | 30.0% | |
!! | TGATTTTGAAGATTGTTTGC+AGG | - | tig0033031:26343-26362 | Msa1450600:intron | 30.0% |
TGTTTGCAGGTAAAATATCT+TGG | - | tig0033031:26356-26375 | Msa1450600:intron | 30.0% | |
TTCAGATGAAAGATAGATTG+TGG | + | tig0033031:26545-26564 | None:intergenic | 30.0% | |
TGTGCCCAATTTAAATTAGA+AGG | - | tig0033031:26567-26586 | Msa1450600:intron | 30.0% | |
TTTAAATTAGAAGGAAAGGC+AGG | - | tig0033031:26576-26595 | Msa1450600:intron | 30.0% | |
TTGGAATCGTATGAACATAA+TGG | - | tig0033031:26624-26643 | Msa1450600:intron | 30.0% | |
TGTATAATGTTTGCAGATAG+CGG | - | tig0033031:26843-26862 | Msa1450600:CDS | 30.0% | |
!!! | TTTTATAATAAAGCACTGGC+AGG | - | tig0033031:26898-26917 | Msa1450600:intron | 30.0% |
!!! | GATTTTTCATGTTAGTCTTC+AGG | + | tig0033031:27020-27039 | None:intergenic | 30.0% |
TAATTGGGAAGGAATAGAAA+AGG | - | tig0033031:27122-27141 | Msa1450600:intron | 30.0% | |
TTCATTATTCCTCTTCATTC+TGG | - | tig0033031:27250-27269 | Msa1450600:intron | 30.0% | |
!!! | AAGATGCATGTTGATTTTAG+AGG | - | tig0033031:27330-27349 | Msa1450600:intron | 30.0% |
AATAGTACCACAATCTCAAA+TGG | - | tig0033031:27421-27440 | Msa1450600:intron | 30.0% | |
ACTTCACCAAATCAAAAACA+CGG | + | tig0033031:27458-27477 | None:intergenic | 30.0% | |
AGTAATGCAACAGAAATAGA+AGG | + | tig0033031:27840-27859 | None:intergenic | 30.0% | |
!! | TAATGTGTTACTCTTTTGAC+AGG | - | tig0033031:27873-27892 | Msa1450600:intron | 30.0% |
!! | AATGTGTTACTCTTTTGACA+GGG | - | tig0033031:27874-27893 | Msa1450600:intron | 30.0% |
!! | GTGTTAGCTACTTTAAAACA+TGG | - | tig0033031:27911-27930 | Msa1450600:intron | 30.0% |
!! | TTAGCTACTTTAAAACATGG+AGG | - | tig0033031:27914-27933 | Msa1450600:intron | 30.0% |
AGAGCTACTAATGAATTTCT+TGG | - | tig0033031:28184-28203 | Msa1450600:intron | 30.0% | |
ATAGAGAAAACAGTAGTTTC+AGG | + | tig0033031:28354-28373 | None:intergenic | 30.0% | |
! | CTTGGATGAAATGGATTTCA+AGG | + | tig0033031:23415-23434 | None:intergenic | 35.0% |
TTCATCCAAGACTTATTCAC+TGG | - | tig0033031:23425-23444 | Msa1450600:intron | 35.0% | |
TGAATCCAGTGAATAAGTCT+TGG | + | tig0033031:23433-23452 | None:intergenic | 35.0% | |
AGAGTTGTAACTGAACTGAA+CGG | + | tig0033031:23465-23484 | None:intergenic | 35.0% | |
AGGAAAATGGTTTGAAGATG+AGG | + | tig0033031:23569-23588 | None:intergenic | 35.0% | |
! | ACCATTTTCCTCAACTTCTT+TGG | - | tig0033031:23578-23597 | Msa1450600:exon | 35.0% |
TCCAAAGAAGTTGAGGAAAA+TGG | + | tig0033031:23582-23601 | None:intergenic | 35.0% | |
AAAATCTGAAAGGTCAACGA+AGG | + | tig0033031:23920-23939 | None:intergenic | 35.0% | |
TAGCAACAACATTATCGTCA+TGG | + | tig0033031:23982-24001 | None:intergenic | 35.0% | |
! | GAAGAATCACTTGTTAAACC+AGG | + | tig0033031:24037-24056 | None:intergenic | 35.0% |
AGCATGATAGGATAACTTAC+AGG | + | tig0033031:24064-24083 | None:intergenic | 35.0% | |
! | TTTTCCCAATTCCGAATACA+GGG | + | tig0033031:24134-24153 | None:intergenic | 35.0% |
AAGTTAATTGACTGCTAGGT+CGG | - | tig0033031:24177-24196 | Msa1450600:CDS | 35.0% | |
AATCGAACAATGCATTGAAC+CGG | - | tig0033031:24229-24248 | Msa1450600:intron | 35.0% | |
ACAATTGAACTATGACCTAG+AGG | + | tig0033031:24260-24279 | None:intergenic | 35.0% | |
AAACAATGCATTGAACCAGT+AGG | - | tig0033031:24426-24445 | Msa1450600:intron | 35.0% | |
TTGTAGTATTGTCAACGGTT+CGG | + | tig0033031:24489-24508 | None:intergenic | 35.0% | |
! | CGTGTTATAATAAGGGTACA+AGG | + | tig0033031:24737-24756 | None:intergenic | 35.0% |
! | GTTTGAGATACTACAACGAA+AGG | + | tig0033031:24865-24884 | None:intergenic | 35.0% |
! | CTTCCTTTTGTTGGAATTGT+AGG | - | tig0033031:25088-25107 | Msa1450600:intron | 35.0% |
AAGCCTACAATTCCAACAAA+AGG | + | tig0033031:25094-25113 | None:intergenic | 35.0% | |
CTTGTGCCAACAATAAACAA+AGG | + | tig0033031:25275-25294 | None:intergenic | 35.0% | |
!! | AAGTATCGGAGCTAATATTC+TGG | - | tig0033031:25292-25311 | Msa1450600:intron | 35.0% |
ATACAGATCAATGTGGTGAA+GGG | + | tig0033031:25516-25535 | None:intergenic | 35.0% | |
GATTATGCATACGGAAAACA+TGG | + | tig0033031:25593-25612 | None:intergenic | 35.0% | |
! | ATTTTCTTCATGTGGGAACA+TGG | + | tig0033031:25865-25884 | None:intergenic | 35.0% |
GTTCCCACATGAAGAAAATA+TGG | - | tig0033031:25866-25885 | Msa1450600:intron | 35.0% | |
CCCAACAACAAAAAATGTGT+TGG | + | tig0033031:25991-26010 | None:intergenic | 35.0% | |
! | GGATCCCATAACTTTAGAAA+TGG | - | tig0033031:26023-26042 | Msa1450600:intron | 35.0% |
!! | GGAACCCATTTCTAAAGTTA+TGG | + | tig0033031:26031-26050 | None:intergenic | 35.0% |
TGGATCTCATCTTCTATTTG+GGG | + | tig0033031:26053-26072 | None:intergenic | 35.0% | |
GCAGATTTCACTAAACCATA+TGG | + | tig0033031:26073-26092 | None:intergenic | 35.0% | |
TATGTTATGACCATTGGCAT+TGG | - | tig0033031:26200-26219 | Msa1450600:intron | 35.0% | |
AACAAATGTGCAATTTCCAG+TGG | + | tig0033031:26258-26277 | None:intergenic | 35.0% | |
AGTCACATATTCAAAGAGCT+TGG | - | tig0033031:26296-26315 | Msa1450600:intron | 35.0% | |
TATTCAAAGAGCTTGGCAAT+TGG | - | tig0033031:26303-26322 | Msa1450600:intron | 35.0% | |
GTAAAATATCTTGGTGAGGA+TGG | - | tig0033031:26365-26384 | Msa1450600:intron | 35.0% | |
ATAGCTAGTATGCTATAAGC+TGG | + | tig0033031:26682-26701 | None:intergenic | 35.0% | |
GCTATCTGCAAACATTATAC+AGG | + | tig0033031:26844-26863 | None:intergenic | 35.0% | |
AATTTACTCGCCTTGCTAAT+TGG | - | tig0033031:27106-27125 | Msa1450600:intron | 35.0% | |
ATTTACTCGCCTTGCTAATT+GGG | - | tig0033031:27107-27126 | Msa1450600:intron | 35.0% | |
GTATGACCAATATTCACTGA+AGG | - | tig0033031:27209-27228 | Msa1450600:intron | 35.0% | |
TGAAAGCCTTCAGTGAATAT+TGG | + | tig0033031:27218-27237 | None:intergenic | 35.0% | |
! | AGTCTAGGACATTGTTTAAG+TGG | - | tig0033031:27303-27322 | Msa1450600:intron | 35.0% |
! | TTCTCGTATCATCTCTTTTC+TGG | - | tig0033031:27609-27628 | Msa1450600:intron | 35.0% |
TACTTACGTGCAATCTGTAT+CGG | - | tig0033031:27707-27726 | Msa1450600:intron | 35.0% | |
! | TTTAAAACATGGAGGTCATC+TGG | - | tig0033031:27922-27941 | Msa1450600:intron | 35.0% |
CATCGATATCATTCCTTGAT+TGG | - | tig0033031:28084-28103 | Msa1450600:CDS | 35.0% | |
TATAATAGCGGCTGCTTAAT+TGG | + | tig0033031:28122-28141 | None:intergenic | 35.0% | |
CTCTACACCAAACACATTAT+TGG | - | tig0033031:28396-28415 | Msa1450600:intron | 35.0% | |
CAATGTAACTGAAGATGGAA+TGG | - | tig0033031:28447-28466 | Msa1450600:intron | 35.0% | |
TCCAGATTCTCCTAAAGAAT+AGG | - | tig0033031:28561-28580 | Msa1450600:CDS | 35.0% | |
! | ACCTATTCTTTAGGAGAATC+TGG | + | tig0033031:28565-28584 | None:intergenic | 35.0% |
!! | TTAAAGAGGTGTTGCATTGT+CGG | + | tig0033031:28656-28675 | None:intergenic | 35.0% |
CGTAGGCTTCAAAATTAAAG+AGG | + | tig0033031:28670-28689 | None:intergenic | 35.0% | |
!!! | TTTAATTTTGAAGCCTACGC+TGG | - | tig0033031:28671-28690 | Msa1450600:CDS | 35.0% |
ATATTGCCGTTACGATACAT+TGG | - | tig0033031:28727-28746 | Msa1450600:CDS | 35.0% | |
TCTGTTCTGTTCTGTTGAAG+TGG | + | tig0033031:23239-23258 | None:intergenic | 40.0% | |
!! | GTAACCGTTTGAAGTTGATG+AGG | + | tig0033031:23303-23322 | None:intergenic | 40.0% |
GGTTACTTGTTCATCCTCAA+AGG | - | tig0033031:23317-23336 | Msa1450600:three_prime_UTR | 40.0% | |
! | GACTTGCTCTGATTCCAATA+TGG | - | tig0033031:23339-23358 | Msa1450600:three_prime_UTR | 40.0% |
TGAGAAGAGTAGCAAAAGTG+AGG | + | tig0033031:23373-23392 | None:intergenic | 40.0% | |
GAGTTGTAACTGAACTGAAC+GGG | + | tig0033031:23464-23483 | None:intergenic | 40.0% | |
!! | AATCGGACACTTTGAAACGA+CGG | + | tig0033031:23507-23526 | None:intergenic | 40.0% |
! | TCAAAGTGTCCGATTCTTCA+AGG | - | tig0033031:23512-23531 | Msa1450600:three_prime_UTR | 40.0% |
GAATATCCGCCTTGAAGAAT+CGG | + | tig0033031:23524-23543 | None:intergenic | 40.0% | |
AATGGTTTGAAGATGAGGAC+TGG | + | tig0033031:23564-23583 | None:intergenic | 40.0% | |
GAGCATTTCCAAAGAAGTTG+AGG | + | tig0033031:23589-23608 | None:intergenic | 40.0% | |
TGTTATCCAGTCCAAAGCAA+GGG | + | tig0033031:23813-23832 | None:intergenic | 40.0% | |
TTGTTATCCAGTCCAAAGCA+AGG | + | tig0033031:23814-23833 | None:intergenic | 40.0% | |
! | GACTGGATAACAAGTTCTGA+TGG | - | tig0033031:23821-23840 | Msa1450600:intron | 40.0% |
! | GTTTTCCCAATTCCGAATAC+AGG | + | tig0033031:24135-24154 | None:intergenic | 40.0% |
CTAACTTGGGCATAACTACA+TGG | + | tig0033031:24157-24176 | None:intergenic | 40.0% | |
AGTTAATTGACTGCTAGGTC+GGG | - | tig0033031:24178-24197 | Msa1450600:CDS | 40.0% | |
AACCAAACCGTTGACAATAC+TGG | - | tig0033031:24326-24345 | Msa1450600:CDS | 40.0% | |
AACCAGTATTGTCAACGGTT+TGG | + | tig0033031:24331-24350 | None:intergenic | 40.0% | |
TTGATTTATTCCAACAGGCG+AGG | - | tig0033031:24378-24397 | Msa1450600:CDS | 40.0% | |
ACAGTTGAACTATGACCTAG+AGG | + | tig0033031:24453-24472 | None:intergenic | 40.0% | |
ACCAAACCGTTCAATTCAAC+CGG | - | tig0033031:24527-24546 | Msa1450600:CDS | 40.0% | |
TCTAGCATATTTGACGACGT+CGG | + | tig0033031:24709-24728 | None:intergenic | 40.0% | |
!! | ATTTGGAGGTGTTCCAATCA+CGG | - | tig0033031:24943-24962 | Msa1450600:intron | 40.0% |
!! | ACAATAAACAAAGGCGCCTT+GGG | + | tig0033031:25266-25285 | None:intergenic | 40.0% |
!! | AACAATAAACAAAGGCGCCT+TGG | + | tig0033031:25267-25286 | None:intergenic | 40.0% |
! | AAGGCGCCTTTGTTTATTGT+TGG | - | tig0033031:25266-25285 | Msa1450600:intron | 40.0% |
GATACAGATCAATGTGGTGA+AGG | + | tig0033031:25517-25536 | None:intergenic | 40.0% | |
ATAATCCTTAAAGCGAGCAG+AGG | + | tig0033031:25752-25771 | None:intergenic | 40.0% | |
TGCTTTCCCTCTGACAAATT+GGG | + | tig0033031:25808-25827 | None:intergenic | 40.0% | |
TTGCTTTCCCTCTGACAAAT+TGG | + | tig0033031:25809-25828 | None:intergenic | 40.0% | |
GGATCTCATCTTCTATTTGG+GGG | + | tig0033031:26052-26071 | None:intergenic | 40.0% | |
ATAGGATGAACCAATGCCAA+TGG | + | tig0033031:26213-26232 | None:intergenic | 40.0% | |
! | TTTTCAAACTACAGCACCAC+TGG | - | tig0033031:26239-26258 | Msa1450600:intron | 40.0% |
GCAGGTAAAATATCTTGGTG+AGG | - | tig0033031:26361-26380 | Msa1450600:intron | 40.0% | |
TTACTAACCAAAAGGTCCCA+TGG | + | tig0033031:26431-26450 | None:intergenic | 40.0% | |
TGGAAATGTTGGAGAACGTT+TGG | - | tig0033031:26605-26624 | Msa1450600:intron | 40.0% | |
! | GCATACTAGCTATGTGCTTT+TGG | - | tig0033031:26689-26708 | Msa1450600:intron | 40.0% |
CATTGCTAGTGCTCTTTAAC+TGG | - | tig0033031:26807-26826 | Msa1450600:CDS | 40.0% | |
! | AAAACTTTTGCACAGGAGCA+CGG | + | tig0033031:26882-26901 | None:intergenic | 40.0% |
!! | TATAATAAAGCACTGGCAGG+TGG | - | tig0033031:26901-26920 | Msa1450600:intron | 40.0% |
TTAGCAAGGCGAGTAAATTG+AGG | + | tig0033031:27105-27124 | None:intergenic | 40.0% | |
CTATTCCTTCCCAATTAGCA+AGG | + | tig0033031:27119-27138 | None:intergenic | 40.0% | |
TTGGGAAGGAATAGAAAAGG+TGG | - | tig0033031:27125-27144 | Msa1450600:intron | 40.0% | |
!! | GCTGTTCCGTGTTTTTGATT+TGG | - | tig0033031:27449-27468 | Msa1450600:intron | 40.0% |
! | AGAGCACTAATACAGAGAAG+CGG | + | tig0033031:27735-27754 | None:intergenic | 40.0% |
!! | GTCATCTGGCTTTCTTTGAA+GGG | - | tig0033031:27936-27955 | Msa1450600:intron | 40.0% |
CAAAACGAGTCAAGTACCAA+AGG | + | tig0033031:27976-27995 | None:intergenic | 40.0% | |
ATGATTTACTTGCCTGTTGC+AGG | - | tig0033031:28155-28174 | Msa1450600:intron | 40.0% | |
TAGTGCACCAAGATAGTACA+GGG | + | tig0033031:28313-28332 | None:intergenic | 40.0% | |
TTAGTGCACCAAGATAGTAC+AGG | + | tig0033031:28314-28333 | None:intergenic | 40.0% | |
! | TACTATCTTGGTGCACTAAG+TGG | - | tig0033031:28315-28334 | Msa1450600:intron | 40.0% |
GACGAGTCCAATAATGTGTT+TGG | + | tig0033031:28406-28425 | None:intergenic | 40.0% | |
TTGGACTCGTCAATTGATCA+AGG | - | tig0033031:28415-28434 | Msa1450600:intron | 40.0% | |
TGTAACTGAAGATGGAATGG+TGG | - | tig0033031:28450-28469 | Msa1450600:intron | 40.0% | |
TCAAAGAGTAGTGATTCCTC+TGG | - | tig0033031:28613-28632 | Msa1450600:CDS | 40.0% | |
ACTTGTTTATGCAATGCCAG+AGG | + | tig0033031:28632-28651 | None:intergenic | 40.0% | |
GGTTATCTCGACAAAATCGA+TGG | - | tig0033031:28692-28711 | Msa1450600:CDS | 40.0% | |
CTAGTGCCAATGTATCGTAA+CGG | + | tig0033031:28736-28755 | None:intergenic | 40.0% | |
GACGCCTCATCAACTTCAAA+CGG | - | tig0033031:23296-23315 | Msa1450600:three_prime_UTR | 45.0% | |
GAATCAGAGCAAGTCCTTTG+AGG | + | tig0033031:23334-23353 | None:intergenic | 45.0% | |
GTGAGGAGGTAATGCCATAT+TGG | + | tig0033031:23356-23375 | None:intergenic | 45.0% | |
GAAGAGTAGCAAAAGTGAGG+AGG | + | tig0033031:23370-23389 | None:intergenic | 45.0% | |
!! | AACGACGGTGTCGTAGATTT+GGG | + | tig0033031:23492-23511 | None:intergenic | 45.0% |
!! | AAACGACGGTGTCGTAGATT+TGG | + | tig0033031:23493-23512 | None:intergenic | 45.0% |
AAGTGTCCGATTCTTCAAGG+CGG | - | tig0033031:23515-23534 | Msa1450600:three_prime_UTR | 45.0% | |
ACTGGAAAGCCATGGTGTAA+CGG | + | tig0033031:23546-23565 | None:intergenic | 45.0% | |
TGTCTCTCTCTCCCTGTATT+CGG | - | tig0033031:24120-24139 | Msa1450600:intron | 45.0% | |
TCTCTCCCTGTATTCGGAAT+TGG | - | tig0033031:24126-24145 | Msa1450600:CDS | 45.0% | |
CTCTCCCTGTATTCGGAATT+GGG | - | tig0033031:24127-24146 | Msa1450600:CDS | 45.0% | |
GTTAATTGACTGCTAGGTCG+GGG | - | tig0033031:24179-24198 | Msa1450600:CDS | 45.0% | |
CCGTGAACCAGTATTGTCAA+CGG | + | tig0033031:24336-24355 | None:intergenic | 45.0% | |
!! | CCGTTGACAATACTGGTTCA+CGG | - | tig0033031:24333-24352 | Msa1450600:CDS | 45.0% |
!! | ATACTGGTTCACGGCTCAAT+AGG | - | tig0033031:24342-24361 | Msa1450600:CDS | 45.0% |
ATTGAACCAGTAGGACCTCT+AGG | - | tig0033031:24435-24454 | Msa1450600:intron | 45.0% | |
GTTCAGCCGGTTGAATTGAA+CGG | + | tig0033031:24536-24555 | None:intergenic | 45.0% | |
GCATATCATACAGCAAAGCG+TGG | - | tig0033031:24890-24909 | Msa1450600:intron | 45.0% | |
ATCATACAGCAAAGCGTGGA+TGG | - | tig0033031:24894-24913 | Msa1450600:intron | 45.0% | |
GTTGTTGTCAGTAATCACCG+AGG | - | tig0033031:24920-24939 | Msa1450600:intron | 45.0% | |
GTCAGTAATCACCGAGGATT+TGG | - | tig0033031:24926-24945 | Msa1450600:intron | 45.0% | |
AGTAATCACCGAGGATTTGG+AGG | - | tig0033031:24929-24948 | Msa1450600:intron | 45.0% | |
TTGGAACACCTCCAAATCCT+CGG | + | tig0033031:24940-24959 | None:intergenic | 45.0% | |
GCAGGATAACTAACCGTGAT+TGG | + | tig0033031:24959-24978 | None:intergenic | 45.0% | |
!! | CTACAATTCTGGATGGACTG+AGG | - | tig0033031:25202-25221 | Msa1450600:CDS | 45.0% |
AGAACCCCCAATTTGTCAGA+GGG | - | tig0033031:25799-25818 | Msa1450600:intron | 45.0% | |
CTTTCCCTCTGACAAATTGG+GGG | + | tig0033031:25806-25825 | None:intergenic | 45.0% | |
GCTTTCCCTCTGACAAATTG+GGG | + | tig0033031:25807-25826 | None:intergenic | 45.0% | |
GGTGAAAATACTCCTGTAGC+TGG | - | tig0033031:26386-26405 | Msa1450600:intron | 45.0% | |
TGTAGCTGTTTGCTCTCCAT+GGG | - | tig0033031:26412-26431 | Msa1450600:intron | 45.0% | |
GCAGGCATACATGGAAATGT+TGG | - | tig0033031:26594-26613 | Msa1450600:intron | 45.0% | |
CTGGTGTCTGCAGTGAATAT+TGG | + | tig0033031:27082-27101 | None:intergenic | 45.0% | |
! | GCACACACCATTTGAGATTG+TGG | + | tig0033031:27431-27450 | None:intergenic | 45.0% |
GCTTCTCTGTATTAGTGCTC+TGG | - | tig0033031:27734-27753 | Msa1450600:intron | 45.0% | |
!! | GGTCATCTGGCTTTCTTTGA+AGG | - | tig0033031:27935-27954 | Msa1450600:intron | 45.0% |
! | GGATAACTGCATCTAGCCTT+TGG | - | tig0033031:27957-27976 | Msa1450600:intron | 45.0% |
! | TGAAGGGCAGCTAAAAGCAT+TGG | + | tig0033031:28032-28051 | None:intergenic | 45.0% |
ATTTACTTGCCTGTTGCAGG+TGG | - | tig0033031:28158-28177 | Msa1450600:intron | 45.0% | |
TTTACTTGCCTGTTGCAGGT+GGG | - | tig0033031:28159-28178 | Msa1450600:intron | 45.0% | |
CCAAGATAGTACAGGGCAAA+AGG | + | tig0033031:28306-28325 | None:intergenic | 45.0% | |
! | CCTTTTGCCCTGTACTATCT+TGG | - | tig0033031:28303-28322 | Msa1450600:intron | 45.0% |
ATTAACGGTGATGCTGATGC+AGG | - | tig0033031:28372-28391 | Msa1450600:intron | 45.0% | |
! | TTCTTCTGGTTGCCTGTTGT+TGG | + | tig0033031:28493-28512 | None:intergenic | 45.0% |
TTTGTCGAGATAACCAGCGT+AGG | + | tig0033031:28687-28706 | None:intergenic | 45.0% | |
CGTTACGATACATTGGCACT+AGG | - | tig0033031:28734-28753 | Msa1450600:CDS | 45.0% | |
!! | AAATTAAATTAAATTATAGT+GGG | - | tig0033031:24798-24817 | Msa1450600:intron | 5.0% |
!! | TATAAAAAATAATAATTGAA+GGG | + | tig0033031:28048-28067 | None:intergenic | 5.0% |
!! | TTATAAAAAATAATAATTGA+AGG | + | tig0033031:28049-28068 | None:intergenic | 5.0% |
GCGGATATTCCGTTACACCA+TGG | - | tig0033031:23534-23553 | Msa1450600:three_prime_UTR | 50.0% | |
AGATGAGGACTGGAAAGCCA+TGG | + | tig0033031:23554-23573 | None:intergenic | 50.0% | |
CACGACACTTCTGATCGTGT+TGG | + | tig0033031:23701-23720 | None:intergenic | 50.0% | |
!! | TGATGGTGGAACCCTTGCTT+TGG | - | tig0033031:23799-23818 | Msa1450600:intron | 50.0% |
GAACAATGCATTGAACCGGC+AGG | - | tig0033031:24233-24252 | Msa1450600:intron | 50.0% | |
CTATGACCTAGAGGTCCTAC+TGG | + | tig0033031:24444-24463 | None:intergenic | 50.0% | |
GCCGGTTGAATTGAACGGTT+TGG | + | tig0033031:24531-24550 | None:intergenic | 50.0% | |
ATTCAACCGGCTGAACCGTT+TGG | - | tig0033031:24540-24559 | Msa1450600:CDS | 50.0% | |
ACTGAACCAAACGGTTCAGC+CGG | + | tig0033031:24549-24568 | None:intergenic | 50.0% | |
TCTCCACAGAGAGAATCCCA+AGG | - | tig0033031:25247-25266 | Msa1450600:intron | 50.0% | |
CTTAAAGCGAGCAGAGGCAA+TGG | + | tig0033031:25746-25765 | None:intergenic | 50.0% | |
CATTGCCTCTGCTCGCTTTA+AGG | - | tig0033031:25744-25763 | Msa1450600:intron | 50.0% | |
GAGAACCCCCAATTTGTCAG+AGG | - | tig0033031:25798-25817 | Msa1450600:intron | 50.0% | |
GTTGTTGGGCGAAATTCACG+TGG | - | tig0033031:26002-26021 | Msa1450600:intron | 50.0% | |
CTGTAGCTGTTTGCTCTCCA+TGG | - | tig0033031:26411-26430 | Msa1450600:intron | 50.0% | |
! | TTGCTCTCCATGGGACCTTT+TGG | - | tig0033031:26421-26440 | Msa1450600:intron | 50.0% |
GAAGGAAAGGCAGGCATACA+TGG | - | tig0033031:26585-26604 | Msa1450600:intron | 50.0% | |
CAAGGCGAGTAAATTGAGGC+TGG | + | tig0033031:27101-27120 | None:intergenic | 50.0% | |
ACTCGCCTTGCTAATTGGGA+AGG | - | tig0033031:27111-27130 | Msa1450600:intron | 50.0% | |
CTCATACTTCCCAACCATGC+GGG | + | tig0033031:27560-27579 | None:intergenic | 50.0% | |
CCTCATACTTCCCAACCATG+CGG | + | tig0033031:27561-27580 | None:intergenic | 50.0% | |
TTCATCCCAGGGAATGGCTT+CGG | + | tig0033031:27778-27797 | None:intergenic | 50.0% | |
CTTGCATTCATCCCAGGGAA+TGG | + | tig0033031:27784-27803 | None:intergenic | 50.0% | |
TCCCTGGGATGAATGCAAGT+AGG | - | tig0033031:27785-27804 | Msa1450600:intron | 50.0% | |
GCCTACTTGCATTCATCCCA+GGG | + | tig0033031:27789-27808 | None:intergenic | 50.0% | |
AGCCTACTTGCATTCATCCC+AGG | + | tig0033031:27790-27809 | None:intergenic | 50.0% | |
TTGAACGACGAGCCAACAAC+AGG | - | tig0033031:28478-28497 | Msa1450600:CDS | 50.0% | |
! | TGATGAGGCGTCCAGTTCCA+TGG | + | tig0033031:23288-23307 | None:intergenic | 55.0% |
! | GTGGAACCCTTGCTTTGGAC+TGG | - | tig0033031:23804-23823 | Msa1450600:intron | 55.0% |
ATTGAACCGGCAGGACCTCT+AGG | - | tig0033031:24242-24261 | Msa1450600:intron | 55.0% | |
CTATGACCTAGAGGTCCTGC+CGG | + | tig0033031:24251-24270 | None:intergenic | 55.0% | |
GATTCAAAGGCCTCGCCTGT+TGG | + | tig0033031:24391-24410 | None:intergenic | 55.0% | |
GACTGAGGATACTCGCACAG+TGG | - | tig0033031:25217-25236 | Msa1450600:CDS | 55.0% | |
ACAGCTACAGCTCCAGCTAC+AGG | + | tig0033031:26401-26420 | None:intergenic | 55.0% | |
ATCATGCCACCCGCATGGTT+GGG | - | tig0033031:27548-27567 | Msa1450600:intron | 55.0% | |
ATACTTCCCAACCATGCGGG+TGG | + | tig0033031:27557-27576 | None:intergenic | 55.0% | |
! | CCGCATGGTTGGGAAGTATG+AGG | - | tig0033031:27558-27577 | Msa1450600:intron | 55.0% |
ATGGCTTCGGTGGTACAGAC+AGG | + | tig0033031:27765-27784 | None:intergenic | 55.0% | |
TACCACCGAAGCCATTCCCT+GGG | - | tig0033031:27770-27789 | Msa1450600:intron | 55.0% | |
AGCTCTTACCCACCTGCAAC+AGG | + | tig0033031:28170-28189 | None:intergenic | 55.0% | |
GCGCCTTGGGATTCTCTCTG+TGG | + | tig0033031:25253-25272 | None:intergenic | 60.0% | |
TGACGATCATGCCACCCGCA+TGG | - | tig0033031:27543-27562 | Msa1450600:intron | 60.0% | |
GATCATGCCACCCGCATGGT+TGG | - | tig0033031:27547-27566 | Msa1450600:intron | 60.0% | |
GTACCACCGAAGCCATTCCC+TGG | - | tig0033031:27769-27788 | Msa1450600:intron | 60.0% | |
ATCCCAGGGAATGGCTTCGG+TGG | + | tig0033031:27775-27794 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0033031 | gene | 23211 | 28890 | 23211 | ID=Msa1450600;Name=Msa1450600 |
tig0033031 | mRNA | 23211 | 28890 | 23211 | ID=Msa1450600-mRNA-1;Parent=Msa1450600;Name=Msa1450600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=76|1|1|1|0.92|0.85|14|274|466 |
tig0033031 | exon | 23211 | 23411 | 23211 | ID=Msa1450600-mRNA-1:exon:17569;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 23506 | 23707 | 23506 | ID=Msa1450600-mRNA-1:exon:17568;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 23855 | 23924 | 23855 | ID=Msa1450600-mRNA-1:exon:17567;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 24123 | 24206 | 24123 | ID=Msa1450600-mRNA-1:exon:17566;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 24299 | 24429 | 24299 | ID=Msa1450600-mRNA-1:exon:17565;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 24522 | 24578 | 24522 | ID=Msa1450600-mRNA-1:exon:17564;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 24958 | 25006 | 24958 | ID=Msa1450600-mRNA-1:exon:17563;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 25157 | 25242 | 25157 | ID=Msa1450600-mRNA-1:exon:17562;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 25659 | 25736 | 25659 | ID=Msa1450600-mRNA-1:exon:17561;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 26788 | 26910 | 26788 | ID=Msa1450600-mRNA-1:exon:17560;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 27137 | 27226 | 27137 | ID=Msa1450600-mRNA-1:exon:17559;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 28038 | 28138 | 28038 | ID=Msa1450600-mRNA-1:exon:17558;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 28259 | 28320 | 28259 | ID=Msa1450600-mRNA-1:exon:17557;Parent=Msa1450600-mRNA-1 |
tig0033031 | exon | 28474 | 28890 | 28474 | ID=Msa1450600-mRNA-1:exon:17556;Parent=Msa1450600-mRNA-1 |
tig0033031 | five_prime_UTR | 28815 | 28890 | 28815 | ID=Msa1450600-mRNA-1:five_prime_utr;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 28474 | 28814 | 28474 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 28259 | 28320 | 28259 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 28038 | 28138 | 28038 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 27137 | 27226 | 27137 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 26788 | 26910 | 26788 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 25659 | 25736 | 25659 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 25157 | 25242 | 25157 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 24958 | 25006 | 24958 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 24522 | 24578 | 24522 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 24299 | 24429 | 24299 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 24123 | 24206 | 24123 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 23855 | 23924 | 23855 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | CDS | 23579 | 23707 | 23579 | ID=Msa1450600-mRNA-1:cds;Parent=Msa1450600-mRNA-1 |
tig0033031 | three_prime_UTR | 23506 | 23578 | 23506 | ID=Msa1450600-mRNA-1:three_prime_utr;Parent=Msa1450600-mRNA-1 |
tig0033031 | three_prime_UTR | 23211 | 23411 | 23211 | ID=Msa1450600-mRNA-1:three_prime_utr;Parent=Msa1450600-mRNA-1 |
Gene Sequence |
Protein sequence |