Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790740 | XP_024637186.1 | 83.333 | 336 | 44 | 5 | 10 | 335 | 1 | 334 | 0.0 | 550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790740 | sp|Q8RY18|TRF1A_ARATH | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 3.67e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790740 | A0A396I6R9 | 83.333 | 336 | 44 | 5 | 10 | 335 | 1 | 334 | 0.0 | 550 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0646130 | Msa0790740 | 0.837062 | 6.488646e-57 | -8.615850e-47 |
| Msa0685760 | Msa0790740 | 0.867324 | 1.488673e-65 | -8.615850e-47 |
| Msa0549590 | Msa0790740 | 0.867490 | 1.317047e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790740 | MtrunA17_Chr4g0035371 | 83.333 | 336 | 44 | 5 | 10 | 335 | 1 | 334 | 0.0 | 550 |
| Msa0790740 | MtrunA17_Chr8g0380881 | 58.904 | 219 | 78 | 3 | 127 | 335 | 6 | 222 | 4.02e-73 | 234 |
| Msa0790740 | MtrunA17_Chr8g0380881 | 43.537 | 147 | 68 | 5 | 8 | 147 | 323 | 461 | 4.00e-23 | 100 |
| Msa0790740 | MtrunA17_Chr8g0380871 | 57.042 | 142 | 39 | 4 | 220 | 341 | 1 | 140 | 1.63e-39 | 137 |
| Msa0790740 | MtrunA17_Chr1g0168221 | 35.556 | 135 | 85 | 1 | 134 | 266 | 171 | 305 | 6.81e-20 | 91.7 |
| Msa0790740 | MtrunA17_Chr1g0186411 | 30.636 | 173 | 110 | 3 | 134 | 304 | 168 | 332 | 8.78e-19 | 88.2 |
| Msa0790740 | MtrunA17_Chr1g0186421 | 26.596 | 282 | 177 | 9 | 29 | 290 | 37 | 308 | 9.92e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790740 | AT5G43560.2 | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 3.73e-20 | 92.8 |
| Msa0790740 | AT5G43560.1 | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 3.73e-20 | 92.8 |
| Msa0790740 | AT5G52330.4 | 25.434 | 346 | 198 | 10 | 37 | 324 | 15 | 358 | 1.10e-18 | 87.0 |
| Msa0790740 | AT5G52330.3 | 25.434 | 346 | 198 | 10 | 37 | 324 | 15 | 358 | 1.10e-18 | 87.0 |
| Msa0790740 | AT5G52330.1 | 25.434 | 346 | 198 | 10 | 37 | 324 | 15 | 358 | 1.10e-18 | 87.0 |
| Msa0790740 | AT5G52330.2 | 27.897 | 233 | 126 | 5 | 134 | 324 | 75 | 307 | 2.12e-17 | 82.8 |
| Msa0790740 | AT1G04300.5 | 33.846 | 130 | 84 | 1 | 133 | 260 | 144 | 273 | 2.59e-16 | 81.3 |
| Msa0790740 | AT1G04300.3 | 33.846 | 130 | 84 | 1 | 133 | 260 | 182 | 311 | 4.52e-16 | 80.5 |
| Msa0790740 | AT1G04300.2 | 33.846 | 130 | 84 | 1 | 133 | 260 | 97 | 226 | 4.53e-16 | 80.5 |
| Msa0790740 | AT1G04300.4 | 33.846 | 130 | 84 | 1 | 133 | 260 | 155 | 284 | 4.57e-16 | 80.5 |
| Msa0790740 | AT1G04300.1 | 33.846 | 130 | 84 | 1 | 133 | 260 | 174 | 303 | 4.76e-16 | 80.5 |
Find 60 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGTTGGAGGATTTAA+AGG | 0.200029 | 5_3:+1581781 | Msa0790740:CDS |
| ATGTGCCATCCCTACTTAAA+AGG | 0.210639 | 5_3:+1583861 | Msa0790740:CDS |
| GTTCAATGAACAGAATGATT+TGG | 0.268943 | 5_3:+1583660 | Msa0790740:CDS |
| GGAAAAGGAAGATGTAATTA+AGG | 0.284760 | 5_3:+1583682 | Msa0790740:CDS |
| ACTTAATTTCATTGTGAATC+AGG | 0.285562 | 5_3:-1582478 | None:intergenic |
| GGGACAATGCTTTCATATAT+AGG | 0.287041 | 5_3:-1583905 | None:intergenic |
| CTCTCTCAGGTAGGGATATT+CGG | 0.292534 | 5_3:+1581635 | Msa0790740:intron |
| TTGTTCTTGACTATCTATTC+AGG | 0.306654 | 5_3:+1583957 | Msa0790740:CDS |
| GTATCGAGCTGAGCTTCTTT+TGG | 0.317600 | 5_3:+1582388 | Msa0790740:CDS |
| TTCAATGAACAGAATGATTT+GGG | 0.320198 | 5_3:+1583661 | Msa0790740:CDS |
| GAATTGCAGATTCAGATTCT+TGG | 0.343032 | 5_3:+1582206 | Msa0790740:CDS |
| GAAAGCATTGTCCCACAGTT+TGG | 0.376185 | 5_3:+1583914 | Msa0790740:CDS |
| AATTGCAGATTCAGATTCTT+GGG | 0.385387 | 5_3:+1582207 | Msa0790740:CDS |
| AATTTCACAGCTGTTCATAC+TGG | 0.387505 | 5_3:+1581881 | Msa0790740:CDS |
| CGATGGTTATGAATCAATAA+AGG | 0.388786 | 5_3:+1583772 | Msa0790740:CDS |
| TCATCGTCATCTGGATAAAT+CGG | 0.406184 | 5_3:-1581742 | None:intergenic |
| TATGAATTTGATTGTGAAGA+AGG | 0.409577 | 5_3:+1582152 | Msa0790740:CDS |
| GAACAGAATGATTTGGGAAA+AGG | 0.412113 | 5_3:+1583667 | Msa0790740:CDS |
| TCATCTGGATAAATCGGCTT+TGG | 0.423529 | 5_3:-1581736 | None:intergenic |
| CTCTATTCTATTCTTACGAT+CGG | 0.438697 | 5_3:-1581335 | None:intergenic |
| TTGAAGTTGGAGGATTTAAA+GGG | 0.450208 | 5_3:+1581782 | Msa0790740:CDS |
| AAAACTAAAGTCATTGAAGT+TGG | 0.455711 | 5_3:+1581769 | Msa0790740:CDS |
| TACCGAAACGTTTAGTTAGT+AGG | 0.465892 | 5_3:-1581994 | None:intergenic |
| TGTACTTTCATGATAGAAAG+TGG | 0.473343 | 5_3:+1583632 | Msa0790740:CDS |
| GGATAAGTTTGTCATATTTG+AGG | 0.483069 | 5_3:+1583808 | Msa0790740:CDS |
| TCACTTTGTGATGGTTATAC+CGG | 0.485058 | 5_3:+1582128 | Msa0790740:CDS |
| GTGACTCAATCGAACTGAAA+AGG | 0.486271 | 5_3:+1584480 | Msa0790740:exon |
| CAGCTCGATACTTCTTTACA+AGG | 0.495077 | 5_3:-1582376 | None:intergenic |
| AAACTAGTATTAGGTTTAGG+TGG | 0.496885 | 5_3:-1581301 | None:intergenic |
| GTTTAGTTAGTAGGTAGTCA+TGG | 0.496896 | 5_3:-1581985 | None:intergenic |
| ACTTCTTTACAAGGAGAGGC+TGG | 0.502762 | 5_3:-1582367 | None:intergenic |
| TACCTACTAACTAAACGTTT+CGG | 0.515447 | 5_3:+1581992 | Msa0790740:CDS |
| TTTAGTTAGTAGGTAGTCAT+GGG | 0.517016 | 5_3:-1581984 | None:intergenic |
| TGTGACATCTCCTTTGCTAA+TGG | 0.517589 | 5_3:+1583739 | Msa0790740:CDS |
| ACTAAAGTCATTGAAGTTGG+AGG | 0.519524 | 5_3:+1581772 | Msa0790740:CDS |
| TGTGCCATCCCTACTTAAAA+GGG | 0.523105 | 5_3:+1583862 | Msa0790740:CDS |
| TTCACAATCAAATTCATAGC+CGG | 0.524784 | 5_3:-1582147 | None:intergenic |
| AAGAAAGATGAGGGTGAAGG+AGG | 0.529070 | 5_3:+1581525 | Msa0790740:CDS |
| CTATTCCACTCACTTTGTGA+TGG | 0.531983 | 5_3:+1582119 | Msa0790740:CDS |
| AGATGTAATTAAGGAAGCCT+TGG | 0.532966 | 5_3:+1583691 | Msa0790740:CDS |
| TTGTCATATTTGAGGACGAA+TGG | 0.538916 | 5_3:+1583816 | Msa0790740:CDS |
| TGATTCACAATGAAATTAAG+TGG | 0.540946 | 5_3:+1582480 | Msa0790740:CDS |
| TCAAAGAAAGATGAGGGTGA+AGG | 0.554404 | 5_3:+1581522 | Msa0790740:CDS |
| CGATACTTCTTTACAAGGAG+AGG | 0.559558 | 5_3:-1582371 | None:intergenic |
| ACAATGAAATTAAGTGGCCA+AGG | 0.567859 | 5_3:+1582486 | Msa0790740:CDS |
| AATAAAGGCTAACAATACTA+CGG | 0.575555 | 5_3:+1583787 | Msa0790740:CDS |
| TATAATATCTCCATTAGCAA+AGG | 0.582185 | 5_3:-1583749 | None:intergenic |
| TGAGGACGAATGGTTTGAGT+TGG | 0.583268 | 5_3:+1583826 | Msa0790740:CDS |
| ACAGTTTGGTTGCATGATTG+TGG | 0.586729 | 5_3:+1583928 | Msa0790740:CDS |
| GAATAGAATAGAGAGAGAAG+CGG | 0.587370 | 5_3:+1581345 | Msa0790740:five_prime_UTR |
| GTGCTCAGTGCATAAAACAT+TGG | 0.590886 | 5_3:-1581944 | None:intergenic |
| CGGCGACAACGCAGAAACAC+AGG | 0.601453 | 5_3:+1581365 | Msa0790740:five_prime_UTR |
| TTTATGCACTGAGCACAGTA+GGG | 0.610157 | 5_3:+1581951 | Msa0790740:CDS |
| CAATCATGCAACCAAACTGT+GGG | 0.620049 | 5_3:-1583925 | None:intergenic |
| ACAATCATGCAACCAAACTG+TGG | 0.621941 | 5_3:-1583926 | None:intergenic |
| TATAACCATCACAAAGTGAG+TGG | 0.636863 | 5_3:-1582124 | None:intergenic |
| TTAGTTAGTAGGTAGTCATG+GGG | 0.642431 | 5_3:-1581983 | None:intergenic |
| CTAATGGAGATATTATACGA+TGG | 0.661760 | 5_3:+1583755 | Msa0790740:CDS |
| TAGTTAGTAGGTAGTCATGG+GGG | 0.756976 | 5_3:-1581982 | None:intergenic |
| AGATAAATCAAATTTCAACG+AGG | 0.780113 | 5_3:-1581906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGCTTATAATTAATTATA+CGG | - | chr5_3:1582283-1582302 | None:intergenic | 10.0% |
| !! | TATAATTAATTATAAGCATT+GGG | + | chr5_3:1582283-1582302 | Msa0790740:intron | 10.0% |
| !! | ATATATTAGTAAAATTCAAA+TGG | - | chr5_3:1582639-1582658 | None:intergenic | 10.0% |
| !!! | ATTTGAATTTTACTAATATA+TGG | + | chr5_3:1582638-1582657 | Msa0790740:intron | 10.0% |
| !! | TTATTCAACAAAAAAAAAAA+CGG | + | chr5_3:1583542-1583561 | Msa0790740:intron | 10.0% |
| !!! | TATTTATTTTTGAAGAAAAA+TGG | + | chr5_3:1584154-1584173 | Msa0790740:intron | 10.0% |
| !! | GTATAATTAATTATAAGCAT+TGG | + | chr5_3:1582282-1582301 | Msa0790740:intron | 15.0% |
| !! | AAAAAAGTAAAAAAATACCT+TGG | - | chr5_3:1582506-1582525 | None:intergenic | 15.0% |
| !! | ATTTAATTAATAGATGTGTA+TGG | + | chr5_3:1582608-1582627 | Msa0790740:intron | 15.0% |
| !! | CAAAAAGATATAACAAATTA+TGG | + | chr5_3:1582953-1582972 | Msa0790740:intron | 15.0% |
| !!! | ATTAATTATTCCTATTTCTA+AGG | - | chr5_3:1583341-1583360 | None:intergenic | 15.0% |
| !! | AAATAGGAATAATTAATTAC+AGG | + | chr5_3:1583344-1583363 | Msa0790740:intron | 15.0% |
| !! | AATGTGATATTCTTAATTTA+TGG | + | chr5_3:1583491-1583510 | Msa0790740:intron | 15.0% |
| !! | ATGTGATATTCTTAATTTAT+GGG | + | chr5_3:1583492-1583511 | Msa0790740:intron | 15.0% |
| !! | TATTCAACAAAAAAAAAAAC+GGG | + | chr5_3:1583543-1583562 | Msa0790740:intron | 15.0% |
| !! | GTCAATAAATAAATCATATA+TGG | - | chr5_3:1583985-1584004 | None:intergenic | 15.0% |
| !! | ATCAAATAGTTAACAAAATA+AGG | - | chr5_3:1584297-1584316 | None:intergenic | 15.0% |
| !!! | CATTTTTTTTACTTTTTTCT+CGG | - | chr5_3:1584509-1584528 | None:intergenic | 15.0% |
| !! | GAGAAAAAAGTAAAAAAAAT+GGG | + | chr5_3:1584508-1584527 | Msa0790740:three_prime_UTR | 15.0% |
| !! | AAAAAACTAGTATTAGGTTT+AGG | - | chr5_3:1581307-1581326 | None:intergenic | 20.0% |
| !! | TTGCTAAAAAAACTAGTATT+AGG | - | chr5_3:1581313-1581332 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAAACTTTGATGA+AGG | + | chr5_3:1581661-1581680 | Msa0790740:CDS | 20.0% |
| !!! | TGAATTTTACTAATATATGG+TGG | + | chr5_3:1582641-1582660 | Msa0790740:intron | 20.0% |
| !! | TATTGTTTGTGTCAATTATT+TGG | - | chr5_3:1582929-1582948 | None:intergenic | 20.0% |
| !! | AAAGATATAACAAATTATGG+TGG | + | chr5_3:1582956-1582975 | Msa0790740:intron | 20.0% |
| !!! | ATATTTTTTATGTGAACTGT+GGG | + | chr5_3:1582988-1583007 | Msa0790740:intron | 20.0% |
| !! | TAACATTGCAGTATTTATAA+GGG | - | chr5_3:1583021-1583040 | None:intergenic | 20.0% |
| !! | TTAACATTGCAGTATTTATA+AGG | - | chr5_3:1583022-1583041 | None:intergenic | 20.0% |
| !!! | TATTGATTTGAGTAACTAAA+TGG | - | chr5_3:1583238-1583257 | None:intergenic | 20.0% |
| !! | TTTGTTGAATAACAAAACAT+GGG | - | chr5_3:1583534-1583553 | None:intergenic | 20.0% |
| !!! | TTTTGTTGAATAACAAAACA+TGG | - | chr5_3:1583535-1583554 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCACATTTTTCT+CGG | - | chr5_3:1584225-1584244 | None:intergenic | 20.0% |
| !! | GAGAAAAATGTGAAAAAAAT+GGG | + | chr5_3:1584224-1584243 | Msa0790740:CDS | 20.0% |
| !!! | ATTATTTATTTAATGGATGC+AGG | + | chr5_3:1584429-1584448 | Msa0790740:intron | 20.0% |
| !! | CGAGAAAAAAGTAAAAAAAA+TGG | + | chr5_3:1584507-1584526 | Msa0790740:three_prime_UTR | 20.0% |
| ! | AGTGTTTATGTGTATTGTAT+TGG | + | chr5_3:1581441-1581460 | Msa0790740:intron | 25.0% |
| !! | TTGATTTTCAAAGAAAGATG+AGG | + | chr5_3:1581515-1581534 | Msa0790740:CDS | 25.0% |
| !! | TGATTTTCAAAGAAAGATGA+GGG | + | chr5_3:1581516-1581535 | Msa0790740:CDS | 25.0% |
| ! | AAAACTAAAGTCATTGAAGT+TGG | + | chr5_3:1581769-1581788 | Msa0790740:CDS | 25.0% |
| ! | AGATAAATCAAATTTCAACG+AGG | - | chr5_3:1581909-1581928 | None:intergenic | 25.0% |
| ! | TATGAATTTGATTGTGAAGA+AGG | + | chr5_3:1582152-1582171 | Msa0790740:CDS | 25.0% |
| ! | TTCTTATGTATGCATTATGT+TGG | + | chr5_3:1582234-1582253 | Msa0790740:intron | 25.0% |
| ! | ACTTAATTTCATTGTGAATC+AGG | - | chr5_3:1582481-1582500 | None:intergenic | 25.0% |
| ! | TGATTCACAATGAAATTAAG+TGG | + | chr5_3:1582480-1582499 | Msa0790740:CDS | 25.0% |
| !!! | GATATTTTTTATGTGAACTG+TGG | + | chr5_3:1582987-1583006 | Msa0790740:intron | 25.0% |
| ! | AATACTGCAATGTTAAACAA+TGG | + | chr5_3:1583026-1583045 | Msa0790740:intron | 25.0% |
| ! | TTGTAAATTTCATTACTGCA+AGG | - | chr5_3:1583067-1583086 | None:intergenic | 25.0% |
| ! | GGAATAATTAATTACAGGAT+AGG | + | chr5_3:1583349-1583368 | Msa0790740:intron | 25.0% |
| !! | TTTGTATTTGATGCTTTTGT+AGG | + | chr5_3:1583438-1583457 | Msa0790740:intron | 25.0% |
| ! | TTAGCAAACAAAAAACTTGA+GGG | - | chr5_3:1583578-1583597 | None:intergenic | 25.0% |
| ! | ATTAGCAAACAAAAAACTTG+AGG | - | chr5_3:1583579-1583598 | None:intergenic | 25.0% |
| ! | TTCAATGAACAGAATGATTT+GGG | + | chr5_3:1583661-1583680 | Msa0790740:CDS | 25.0% |
| ! | TAAAAAAAATTGATGCACCA+AGG | - | chr5_3:1583711-1583730 | None:intergenic | 25.0% |
| !!! | GTGCATCAATTTTTTTTAGA+TGG | + | chr5_3:1583713-1583732 | Msa0790740:CDS | 25.0% |
| ! | TATAATATCTCCATTAGCAA+AGG | - | chr5_3:1583752-1583771 | None:intergenic | 25.0% |
| ! | AATAAAGGCTAACAATACTA+CGG | + | chr5_3:1583787-1583806 | Msa0790740:CDS | 25.0% |
| ! | AATATAAAGAAACAAGACTC+AGG | - | chr5_3:1584007-1584026 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGAAAAATGGAGA+AGG | + | chr5_3:1584160-1584179 | Msa0790740:intron | 25.0% |
| ! | CGAGAAAAATGTGAAAAAAA+TGG | + | chr5_3:1584223-1584242 | Msa0790740:CDS | 25.0% |
| !!! | TGATTTTTGCTGTAAATAGA+CGG | + | chr5_3:1584265-1584284 | Msa0790740:intron | 25.0% |
| ! | TATTTGATAGAAACTGTTTG+TGG | + | chr5_3:1584309-1584328 | Msa0790740:intron | 25.0% |
| AAACTAGTATTAGGTTTAGG+TGG | - | chr5_3:1581304-1581323 | None:intergenic | 30.0% | |
| CTCTATTCTATTCTTACGAT+CGG | - | chr5_3:1581338-1581357 | None:intergenic | 30.0% | |
| GTTTATGTGTATTGTATTGG+TGG | + | chr5_3:1581444-1581463 | Msa0790740:intron | 30.0% | |
| ! | TATTGGTGGTATGAGATTAT+AGG | + | chr5_3:1581458-1581477 | Msa0790740:intron | 30.0% |
| ! | ATTGGTGGTATGAGATTATA+GGG | + | chr5_3:1581459-1581478 | Msa0790740:intron | 30.0% |
| !!! | TTATAGGGTTTTGTTTCAAC+AGG | + | chr5_3:1581474-1581493 | Msa0790740:intron | 30.0% |
| ATTGAAGTTGGAGGATTTAA+AGG | + | chr5_3:1581781-1581800 | Msa0790740:CDS | 30.0% | |
| TTGAAGTTGGAGGATTTAAA+GGG | + | chr5_3:1581782-1581801 | Msa0790740:CDS | 30.0% | |
| AGATTGATATGCCAATATAC+AGG | + | chr5_3:1581858-1581877 | Msa0790740:intron | 30.0% | |
| TTTAGTTAGTAGGTAGTCAT+GGG | - | chr5_3:1581987-1582006 | None:intergenic | 30.0% | |
| TACCTACTAACTAAACGTTT+CGG | + | chr5_3:1581992-1582011 | Msa0790740:CDS | 30.0% | |
| TTCACAATCAAATTCATAGC+CGG | - | chr5_3:1582150-1582169 | None:intergenic | 30.0% | |
| AATTGCAGATTCAGATTCTT+GGG | + | chr5_3:1582207-1582226 | Msa0790740:CDS | 30.0% | |
| TTAGCATGTCTTAGTTGATT+CGG | + | chr5_3:1582708-1582727 | Msa0790740:intron | 30.0% | |
| !!! | TTGTTTTTGAAGCAATGTCT+TGG | + | chr5_3:1582744-1582763 | Msa0790740:intron | 30.0% |
| ! | TTCATCATTTGTTAACCCAA+AGG | + | chr5_3:1582778-1582797 | Msa0790740:intron | 30.0% |
| ! | TCATCATTTGTTAACCCAAA+GGG | + | chr5_3:1582779-1582798 | Msa0790740:intron | 30.0% |
| GCATTACGAGATATTCATAA+TGG | + | chr5_3:1582801-1582820 | Msa0790740:intron | 30.0% | |
| ! | ACTGAATTTTGAACTCATGA+AGG | - | chr5_3:1582827-1582846 | None:intergenic | 30.0% |
| AAATGTTGTACAAACGTTGT+AGG | + | chr5_3:1583407-1583426 | Msa0790740:intron | 30.0% | |
| TGTACTTTCATGATAGAAAG+TGG | + | chr5_3:1583632-1583651 | Msa0790740:CDS | 30.0% | |
| GTTCAATGAACAGAATGATT+TGG | + | chr5_3:1583660-1583679 | Msa0790740:CDS | 30.0% | |
| GGAAAAGGAAGATGTAATTA+AGG | + | chr5_3:1583682-1583701 | Msa0790740:CDS | 30.0% | |
| CTAATGGAGATATTATACGA+TGG | + | chr5_3:1583755-1583774 | Msa0790740:CDS | 30.0% | |
| CGATGGTTATGAATCAATAA+AGG | + | chr5_3:1583772-1583791 | Msa0790740:CDS | 30.0% | |
| GGATAAGTTTGTCATATTTG+AGG | + | chr5_3:1583808-1583827 | Msa0790740:CDS | 30.0% | |
| !! | ATCAACAACCCTTTTAAGTA+GGG | - | chr5_3:1583873-1583892 | None:intergenic | 30.0% |
| !! | TATCAACAACCCTTTTAAGT+AGG | - | chr5_3:1583874-1583893 | None:intergenic | 30.0% |
| TTGTTCTTGACTATCTATTC+AGG | + | chr5_3:1583957-1583976 | Msa0790740:CDS | 30.0% | |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr5_3:1584236-1584255 | Msa0790740:CDS | 30.0% | |
| !! | GATTTTTGCTGTAAATAGAC+GGG | + | chr5_3:1584266-1584285 | Msa0790740:intron | 30.0% |
| !! | ATTTTTGCTGTAAATAGACG+GGG | + | chr5_3:1584267-1584286 | Msa0790740:intron | 30.0% |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr5_3:1584236-1584255 | Msa0790740:CDS | 30.0% | |
| GAATAGAATAGAGAGAGAAG+CGG | + | chr5_3:1581345-1581364 | Msa0790740:five_prime_UTR | 35.0% | |
| GAGAGATGAGTATCAACAAA+AGG | - | chr5_3:1581593-1581612 | None:intergenic | 35.0% | |
| TCATCGTCATCTGGATAAAT+CGG | - | chr5_3:1581745-1581764 | None:intergenic | 35.0% | |
| ! | GTTTTACAATCATCGTCATC+TGG | - | chr5_3:1581754-1581773 | None:intergenic | 35.0% |
| ACTAAAGTCATTGAAGTTGG+AGG | + | chr5_3:1581772-1581791 | Msa0790740:CDS | 35.0% | |
| GCTGTGAAATTCCTGTATAT+TGG | - | chr5_3:1581872-1581891 | None:intergenic | 35.0% | |
| AATTTCACAGCTGTTCATAC+TGG | + | chr5_3:1581881-1581900 | Msa0790740:CDS | 35.0% | |
| TTAGTTAGTAGGTAGTCATG+GGG | - | chr5_3:1581986-1582005 | None:intergenic | 35.0% | |
| GTTTAGTTAGTAGGTAGTCA+TGG | - | chr5_3:1581988-1582007 | None:intergenic | 35.0% | |
| TACCGAAACGTTTAGTTAGT+AGG | - | chr5_3:1581997-1582016 | None:intergenic | 35.0% | |
| TACTAACTAAACGTTTCGGT+AGG | + | chr5_3:1581996-1582015 | Msa0790740:intron | 35.0% | |
| TATAACCATCACAAAGTGAG+TGG | - | chr5_3:1582127-1582146 | None:intergenic | 35.0% | |
| TCACTTTGTGATGGTTATAC+CGG | + | chr5_3:1582128-1582147 | Msa0790740:CDS | 35.0% | |
| GAATTGCAGATTCAGATTCT+TGG | + | chr5_3:1582206-1582225 | Msa0790740:CDS | 35.0% | |
| CAATCATACAATGAGTTGCA+TGG | - | chr5_3:1582321-1582340 | None:intergenic | 35.0% | |
| ACAATGAAATTAAGTGGCCA+AGG | + | chr5_3:1582486-1582505 | Msa0790740:CDS | 35.0% | |
| CAACTAAGACATGCTAAACA+TGG | - | chr5_3:1582705-1582724 | None:intergenic | 35.0% | |
| AATATCTCGTAATGCCCTTT+GGG | - | chr5_3:1582796-1582815 | None:intergenic | 35.0% | |
| ATCATCAGATTCGAATGAGA+GGG | - | chr5_3:1582863-1582882 | None:intergenic | 35.0% | |
| TATCATCAGATTCGAATGAG+AGG | - | chr5_3:1582864-1582883 | None:intergenic | 35.0% | |
| CTGCAATGTTAAACAATGGA+TGG | + | chr5_3:1583030-1583049 | Msa0790740:intron | 35.0% | |
| TTCCACAATTTGATATTCCC+GGG | - | chr5_3:1583292-1583311 | None:intergenic | 35.0% | |
| CTTCCACAATTTGATATTCC+CGG | - | chr5_3:1583293-1583312 | None:intergenic | 35.0% | |
| ! | GAACAGAATGATTTGGGAAA+AGG | + | chr5_3:1583667-1583686 | Msa0790740:CDS | 35.0% |
| AGATGTAATTAAGGAAGCCT+TGG | + | chr5_3:1583691-1583710 | Msa0790740:CDS | 35.0% | |
| TTGTCATATTTGAGGACGAA+TGG | + | chr5_3:1583816-1583835 | Msa0790740:CDS | 35.0% | |
| GGGACAATGCTTTCATATAT+AGG | - | chr5_3:1583908-1583927 | None:intergenic | 35.0% | |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr5_3:1584075-1584094 | Msa0790740:intron | 35.0% |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr5_3:1584075-1584094 | Msa0790740:intron | 35.0% |
| TCAAAGAAAGATGAGGGTGA+AGG | + | chr5_3:1581522-1581541 | Msa0790740:CDS | 40.0% | |
| ! | TCATCTGGATAAATCGGCTT+TGG | - | chr5_3:1581739-1581758 | None:intergenic | 40.0% |
| GTGCTCAGTGCATAAAACAT+TGG | - | chr5_3:1581947-1581966 | None:intergenic | 40.0% | |
| ! | TTTTATGCACTGAGCACAGT+AGG | + | chr5_3:1581950-1581969 | Msa0790740:CDS | 40.0% |
| TTTATGCACTGAGCACAGTA+GGG | + | chr5_3:1581951-1581970 | Msa0790740:CDS | 40.0% | |
| TAGTTAGTAGGTAGTCATGG+GGG | - | chr5_3:1581985-1582004 | None:intergenic | 40.0% | |
| CTATTCCACTCACTTTGTGA+TGG | + | chr5_3:1582119-1582138 | Msa0790740:CDS | 40.0% | |
| ! | AGAAGGTTTTCTTGACGATG+AGG | + | chr5_3:1582169-1582188 | Msa0790740:CDS | 40.0% |
| ! | GAAGGTTTTCTTGACGATGA+GGG | + | chr5_3:1582170-1582189 | Msa0790740:CDS | 40.0% |
| CGATACTTCTTTACAAGGAG+AGG | - | chr5_3:1582374-1582393 | None:intergenic | 40.0% | |
| CAGCTCGATACTTCTTTACA+AGG | - | chr5_3:1582379-1582398 | None:intergenic | 40.0% | |
| GAATATCTCGTAATGCCCTT+TGG | - | chr5_3:1582797-1582816 | None:intergenic | 40.0% | |
| AGAACCATTCTCATCTCAGT+GGG | - | chr5_3:1583120-1583139 | None:intergenic | 40.0% | |
| !!! | GAAGAAGAGCATACTGGTTT+TGG | - | chr5_3:1583168-1583187 | None:intergenic | 40.0% |
| TGAGTAACTAAATGGACACG+TGG | - | chr5_3:1583230-1583249 | None:intergenic | 40.0% | |
| CGGGAATATCAAATTGTGGA+AGG | + | chr5_3:1583291-1583310 | Msa0790740:intron | 40.0% | |
| AAGGACTAAGTCAATTCCAC+TGG | + | chr5_3:1583310-1583329 | Msa0790740:intron | 40.0% | |
| !! | TATTTCTAAGGAAGTGCCAG+TGG | - | chr5_3:1583329-1583348 | None:intergenic | 40.0% |
| ACTGGCACTTCCTTAGAAAT+AGG | + | chr5_3:1583328-1583347 | Msa0790740:intron | 40.0% | |
| TGTGACATCTCCTTTGCTAA+TGG | + | chr5_3:1583739-1583758 | Msa0790740:CDS | 40.0% | |
| ATGTGCCATCCCTACTTAAA+AGG | + | chr5_3:1583861-1583880 | Msa0790740:CDS | 40.0% | |
| TGTGCCATCCCTACTTAAAA+GGG | + | chr5_3:1583862-1583881 | Msa0790740:CDS | 40.0% | |
| !! | ACAACCCTTTTAAGTAGGGA+TGG | - | chr5_3:1583869-1583888 | None:intergenic | 40.0% |
| CAATCATGCAACCAAACTGT+GGG | - | chr5_3:1583928-1583947 | None:intergenic | 40.0% | |
| ACAATCATGCAACCAAACTG+TGG | - | chr5_3:1583929-1583948 | None:intergenic | 40.0% | |
| ACAGTTTGGTTGCATGATTG+TGG | + | chr5_3:1583928-1583947 | Msa0790740:CDS | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr5_3:1584082-1584101 | Msa0790740:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr5_3:1584124-1584143 | None:intergenic | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr5_3:1584082-1584101 | Msa0790740:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr5_3:1584124-1584143 | None:intergenic | 40.0% | |
| GTGACTCAATCGAACTGAAA+AGG | + | chr5_3:1584480-1584499 | Msa0790740:exon | 40.0% | |
| AAGAAAGATGAGGGTGAAGG+AGG | + | chr5_3:1581525-1581544 | Msa0790740:CDS | 45.0% | |
| CTCTCTCAGGTAGGGATATT+CGG | + | chr5_3:1581635-1581654 | Msa0790740:intron | 45.0% | |
| ACTTCTTTACAAGGAGAGGC+TGG | - | chr5_3:1582370-1582389 | None:intergenic | 45.0% | |
| ! | GTATCGAGCTGAGCTTCTTT+TGG | + | chr5_3:1582388-1582407 | Msa0790740:CDS | 45.0% |
| CGAGTAAGCATCTCGTCATT+AGG | + | chr5_3:1582666-1582685 | Msa0790740:intron | 45.0% | |
| ! | GGGAGAGTATGCTGAAATCA+GGG | - | chr5_3:1582887-1582906 | None:intergenic | 45.0% |
| AACCATTCTCATCTCAGTGG+GGG | - | chr5_3:1583118-1583137 | None:intergenic | 45.0% | |
| GAACCATTCTCATCTCAGTG+GGG | - | chr5_3:1583119-1583138 | None:intergenic | 45.0% | |
| GAGAACCATTCTCATCTCAG+TGG | - | chr5_3:1583121-1583140 | None:intergenic | 45.0% | |
| !!! | CTGGTTTTGGAGATGGAAGT+GGG | - | chr5_3:1583155-1583174 | None:intergenic | 45.0% |
| !!! | ACTGGTTTTGGAGATGGAAG+TGG | - | chr5_3:1583156-1583175 | None:intergenic | 45.0% |
| !!! | GAGCATACTGGTTTTGGAGA+TGG | - | chr5_3:1583162-1583181 | None:intergenic | 45.0% |
| GAGGAAAAGATTGACCCAAG+GGG | - | chr5_3:1583194-1583213 | None:intergenic | 45.0% | |
| GGAGGAAAAGATTGACCCAA+GGG | - | chr5_3:1583195-1583214 | None:intergenic | 45.0% | |
| TGGAGGAAAAGATTGACCCA+AGG | - | chr5_3:1583196-1583215 | None:intergenic | 45.0% | |
| CATCACTCTGTTGTCAAACG+CGG | + | chr5_3:1583261-1583280 | Msa0790740:intron | 45.0% | |
| CAATTTGATATTCCCGGGAG+CGG | - | chr5_3:1583287-1583306 | None:intergenic | 45.0% | |
| CTCCCGGGAATATCAAATTG+TGG | + | chr5_3:1583287-1583306 | Msa0790740:intron | 45.0% | |
| TGAGGACGAATGGTTTGAGT+TGG | + | chr5_3:1583826-1583845 | Msa0790740:CDS | 45.0% | |
| !! | GAAAGCATTGTCCCACAGTT+TGG | + | chr5_3:1583914-1583933 | Msa0790740:CDS | 45.0% |
| !!! | TGATATTTTATTTATTATTA+TGG | + | chr5_3:1582547-1582566 | Msa0790740:intron | 5.0% |
| !! | TATTCTAATTATTTATTTAA+TGG | + | chr5_3:1584422-1584441 | Msa0790740:intron | 5.0% |
| TCTCTCTCTCTCTCTCTCTC+AGG | + | chr5_3:1581614-1581633 | Msa0790740:intron | 50.0% | |
| TCTCTCTCTCTCTCTCAGGT+AGG | + | chr5_3:1581626-1581645 | Msa0790740:intron | 50.0% | |
| CTCTCTCTCTCTCTCAGGTA+GGG | + | chr5_3:1581627-1581646 | Msa0790740:intron | 50.0% | |
| ! | GGGGAGAGTATGCTGAAATC+AGG | - | chr5_3:1582888-1582907 | None:intergenic | 50.0% |
| ATTTCAGCATACTCTCCCCC+AGG | + | chr5_3:1582889-1582908 | Msa0790740:intron | 50.0% | |
| TGGCATTTCGAGCTCAACCT+GGG | - | chr5_3:1582909-1582928 | None:intergenic | 50.0% | |
| TTGGCATTTCGAGCTCAACC+TGG | - | chr5_3:1582910-1582929 | None:intergenic | 50.0% | |
| ACCATTCTCATCTCAGTGGG+GGG | - | chr5_3:1583117-1583136 | None:intergenic | 50.0% | |
| TTTGGAGATGGAAGTGGGAC+TGG | - | chr5_3:1583150-1583169 | None:intergenic | 50.0% | |
| ! | GGGTGTGAAGAAGAGCATAC+TGG | - | chr5_3:1583174-1583193 | None:intergenic | 50.0% |
| ATGCTCTTCTTCACACCCCT+TGG | + | chr5_3:1583176-1583195 | Msa0790740:intron | 50.0% | |
| TGCTCTTCTTCACACCCCTT+GGG | + | chr5_3:1583177-1583196 | Msa0790740:intron | 50.0% | |
| TAAATGGACACGTGGCAGCA+GGG | - | chr5_3:1583222-1583241 | None:intergenic | 50.0% | |
| TGTTATCCAGTAGACCGTGC+AGG | + | chr5_3:1584107-1584126 | Msa0790740:intron | 50.0% | |
| TGATATCCAGTAGACCGTGC+AGG | + | chr5_3:1584392-1584411 | Msa0790740:intron | 50.0% | |
| GCATTTCGAGCTCAACCTGG+GGG | - | chr5_3:1582907-1582926 | None:intergenic | 55.0% | |
| GGCATTTCGAGCTCAACCTG+GGG | - | chr5_3:1582908-1582927 | None:intergenic | 55.0% | |
| AAATGGACACGTGGCAGCAG+GGG | - | chr5_3:1583221-1583240 | None:intergenic | 55.0% | |
| CTAAATGGACACGTGGCAGC+AGG | - | chr5_3:1583223-1583242 | None:intergenic | 55.0% | |
| CGGCGACAACGCAGAAACAC+AGG | + | chr5_3:1581365-1581384 | Msa0790740:five_prime_UTR | 60.0% | |
| !! | CTCAGTGGGGGGCATTCTCT+TGG | - | chr5_3:1583106-1583125 | None:intergenic | 60.0% |
| GCCCCCCACTGAGATGAGAA+TGG | + | chr5_3:1583113-1583132 | Msa0790740:intron | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr5_3:1584116-1584135 | None:intergenic | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr5_3:1584116-1584135 | None:intergenic | 60.0% | |
| ACGTGGCAGCAGGGGAATGG+AGG | - | chr5_3:1583213-1583232 | None:intergenic | 65.0% | |
| GACACGTGGCAGCAGGGGAA+TGG | - | chr5_3:1583216-1583235 | None:intergenic | 65.0% | |
| TTGTCAAACGCGGCCGCTCC+CGG | + | chr5_3:1583271-1583290 | Msa0790740:intron | 65.0% | |
| TGTCAAACGCGGCCGCTCCC+GGG | + | chr5_3:1583272-1583291 | Msa0790740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1581274 | 1584551 | 1581274 | ID=Msa0790740;Name=Msa0790740 |
| chr5_3 | mRNA | 1581274 | 1584551 | 1581274 | ID=Msa0790740-mRNA-1;Parent=Msa0790740;Name=Msa0790740-mRNA-1;_AED=0.19;_eAED=0.19;_QI=122|1|1|1|0.87|0.77|9|54|365 |
| chr5_3 | exon | 1581274 | 1581386 | 1581274 | ID=Msa0790740-mRNA-1:exon:552;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1581496 | 1581556 | 1581496 | ID=Msa0790740-mRNA-1:exon:553;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1581644 | 1581803 | 1581644 | ID=Msa0790740-mRNA-1:exon:554;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1581880 | 1582013 | 1581880 | ID=Msa0790740-mRNA-1:exon:555;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1582117 | 1582228 | 1582117 | ID=Msa0790740-mRNA-1:exon:556;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1582355 | 1582507 | 1582355 | ID=Msa0790740-mRNA-1:exon:557;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1583628 | 1583978 | 1583628 | ID=Msa0790740-mRNA-1:exon:558;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1584169 | 1584257 | 1584169 | ID=Msa0790740-mRNA-1:exon:559;Parent=Msa0790740-mRNA-1 |
| chr5_3 | exon | 1584451 | 1584551 | 1584451 | ID=Msa0790740-mRNA-1:exon:560;Parent=Msa0790740-mRNA-1 |
| chr5_3 | five_prime_UTR | 1581274 | 1581386 | 1581274 | ID=Msa0790740-mRNA-1:five_prime_utr;Parent=Msa0790740-mRNA-1 |
| chr5_3 | five_prime_UTR | 1581496 | 1581504 | 1581496 | ID=Msa0790740-mRNA-1:five_prime_utr;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1581505 | 1581556 | 1581505 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1581644 | 1581803 | 1581644 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1581880 | 1582013 | 1581880 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1582117 | 1582228 | 1582117 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1582355 | 1582507 | 1582355 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1583628 | 1583978 | 1583628 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1584169 | 1584257 | 1584169 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | CDS | 1584451 | 1584497 | 1584451 | ID=Msa0790740-mRNA-1:cds;Parent=Msa0790740-mRNA-1 |
| chr5_3 | three_prime_UTR | 1584498 | 1584551 | 1584498 | ID=Msa0790740-mRNA-1:three_prime_utr;Parent=Msa0790740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
