Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549590 | XP_024637186.1 | 83.631 | 336 | 43 | 5 | 10 | 335 | 1 | 334 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549590 | sp|Q8RY18|TRF1A_ARATH | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 2.36e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549590 | A0A396I6R9 | 83.631 | 336 | 43 | 5 | 10 | 335 | 1 | 334 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0549590 | 0.827849 | 1.246685e-54 | -8.615850e-47 |
| Msa0008220 | Msa0549590 | 0.825478 | 4.585579e-54 | -8.615850e-47 |
| Msa0015680 | Msa0549590 | 0.813949 | 1.975236e-51 | -8.615850e-47 |
| Msa0026150 | Msa0549590 | 0.803782 | 2.958250e-49 | -8.615850e-47 |
| Msa0027390 | Msa0549590 | 0.804424 | 2.174758e-49 | -8.615850e-47 |
| Msa0031820 | Msa0549590 | 0.826799 | 2.224218e-54 | -8.615850e-47 |
| Msa0033880 | Msa0549590 | 0.805532 | 1.275465e-49 | -8.615850e-47 |
| Msa0043500 | Msa0549590 | 0.842278 | 2.850687e-58 | -8.615850e-47 |
| Msa0043650 | Msa0549590 | 0.838276 | 3.166640e-57 | -8.615850e-47 |
| Msa0043730 | Msa0549590 | 0.801112 | 1.050130e-48 | -8.615850e-47 |
| Msa0046760 | Msa0549590 | 0.832240 | 1.058057e-55 | -8.615850e-47 |
| Msa0047280 | Msa0549590 | 0.811761 | 5.956779e-51 | -8.615850e-47 |
| Msa0057370 | Msa0549590 | 0.836568 | 8.671873e-57 | -8.615850e-47 |
| Msa0065010 | Msa0549590 | 0.812331 | 4.474015e-51 | -8.615850e-47 |
| Msa0076780 | Msa0549590 | 0.806124 | 9.577035e-50 | -8.615850e-47 |
| Msa0077540 | Msa0549590 | 0.810103 | 1.361391e-50 | -8.615850e-47 |
| Msa0085370 | Msa0549590 | 0.817230 | 3.672677e-52 | -8.615850e-47 |
| Msa0086940 | Msa0549590 | 0.808844 | 2.536195e-50 | -8.615850e-47 |
| Msa0097950 | Msa0549590 | 0.802890 | 4.526096e-49 | -8.615850e-47 |
| Msa0100800 | Msa0549590 | 0.820880 | 5.428471e-53 | -8.615850e-47 |
| Msa0108870 | Msa0549590 | 0.824195 | 9.206621e-54 | -8.615850e-47 |
| Msa0126770 | Msa0549590 | 0.853440 | 2.387195e-61 | -8.615850e-47 |
| Msa0131450 | Msa0549590 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0133820 | Msa0549590 | 0.800089 | 1.697336e-48 | -8.615850e-47 |
| Msa0139990 | Msa0549590 | 0.805725 | 1.162148e-49 | -8.615850e-47 |
| Msa0146770 | Msa0549590 | 0.833795 | 4.344559e-56 | -8.615850e-47 |
| Msa0155330 | Msa0549590 | 0.807803 | 4.228279e-50 | -8.615850e-47 |
| Msa0160670 | Msa0549590 | 0.803302 | 3.720028e-49 | -8.615850e-47 |
| Msa0165300 | Msa0549590 | 0.807906 | 4.019796e-50 | -8.615850e-47 |
| Msa0171850 | Msa0549590 | 0.851902 | 6.558261e-61 | -8.615850e-47 |
| Msa0174000 | Msa0549590 | 0.818677 | 1.729947e-52 | -8.615850e-47 |
| Msa0177270 | Msa0549590 | 0.808627 | 2.822611e-50 | -8.615850e-47 |
| Msa0177700 | Msa0549590 | -0.814545 | 1.458927e-51 | -8.615850e-47 |
| Msa0177750 | Msa0549590 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa0198520 | Msa0549590 | 0.821464 | 3.981532e-53 | -8.615850e-47 |
| Msa0198530 | Msa0549590 | 0.819217 | 1.304164e-52 | -8.615850e-47 |
| Msa0215360 | Msa0549590 | 0.804205 | 2.415777e-49 | -8.615850e-47 |
| Msa0236070 | Msa0549590 | 0.802337 | 5.886306e-49 | -8.615850e-47 |
| Msa0378970 | Msa0549590 | 0.802302 | 5.984482e-49 | -8.615850e-47 |
| Msa0392200 | Msa0549590 | 0.808377 | 3.190639e-50 | -8.615850e-47 |
| Msa0419520 | Msa0549590 | 0.807537 | 4.815134e-50 | -8.615850e-47 |
| Msa0431770 | Msa0549590 | 0.823169 | 1.600820e-53 | -8.615850e-47 |
| Msa0436200 | Msa0549590 | 0.811927 | 5.481402e-51 | -8.615850e-47 |
| Msa0439890 | Msa0549590 | 0.825393 | 4.804757e-54 | -8.615850e-47 |
| Msa0458780 | Msa0549590 | 0.812327 | 4.482690e-51 | -8.615850e-47 |
| Msa0462880 | Msa0549590 | 0.828868 | 7.078565e-55 | -8.615850e-47 |
| Msa0474700 | Msa0549590 | 0.819286 | 1.258119e-52 | -8.615850e-47 |
| Msa0479330 | Msa0549590 | 0.823830 | 1.121498e-53 | -8.615850e-47 |
| Msa0251770 | Msa0549590 | 0.808144 | 3.577590e-50 | -8.615850e-47 |
| Msa0259270 | Msa0549590 | 0.825034 | 5.842367e-54 | -8.615850e-47 |
| Msa0270170 | Msa0549590 | -0.813978 | 1.946398e-51 | -8.615850e-47 |
| Msa0288730 | Msa0549590 | 0.807249 | 5.543305e-50 | -8.615850e-47 |
| Msa0291520 | Msa0549590 | 0.810517 | 1.108129e-50 | -8.615850e-47 |
| Msa0317640 | Msa0549590 | 0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0333160 | Msa0549590 | 0.820709 | 5.942010e-53 | -8.615850e-47 |
| Msa0346990 | Msa0549590 | 0.813385 | 2.629640e-51 | -8.615850e-47 |
| Msa0483740 | Msa0549590 | 0.807880 | 4.072949e-50 | -8.615850e-47 |
| Msa0487780 | Msa0549590 | 0.809522 | 1.815319e-50 | -8.615850e-47 |
| Msa0510290 | Msa0549590 | 0.829237 | 5.761256e-55 | -8.615850e-47 |
| Msa0511490 | Msa0549590 | 0.805958 | 1.038134e-49 | -8.615850e-47 |
| Msa0514180 | Msa0549590 | 0.810819 | 9.533249e-51 | -8.615850e-47 |
| Msa0527910 | Msa0549590 | 0.817899 | 2.595657e-52 | -8.615850e-47 |
| Msa0537770 | Msa0549590 | 0.801288 | 9.665214e-49 | -8.615850e-47 |
| Msa0541040 | Msa0549590 | 0.838135 | 3.442930e-57 | -8.615850e-47 |
| Msa0541260 | Msa0549590 | 0.809064 | 2.275982e-50 | -8.615850e-47 |
| Msa0545060 | Msa0549590 | 0.802910 | 4.483123e-49 | -8.615850e-47 |
| Msa0549590 | Msa0550570 | 0.816958 | 4.228690e-52 | -8.615850e-47 |
| Msa0549590 | Msa0576680 | 0.803780 | 2.960049e-49 | -8.615850e-47 |
| Msa0549590 | Msa0578090 | 0.802124 | 6.510246e-49 | -8.615850e-47 |
| Msa0549590 | Msa0586850 | 0.808992 | 2.358569e-50 | -8.615850e-47 |
| Msa0549590 | Msa0597000 | 0.838655 | 2.527677e-57 | -8.615850e-47 |
| Msa0549590 | Msa0600410 | -0.801348 | 9.392700e-49 | -8.615850e-47 |
| Msa0549590 | Msa0603670 | 0.833950 | 3.972870e-56 | -8.615850e-47 |
| Msa0549590 | Msa0605000 | 0.804244 | 2.370985e-49 | -8.615850e-47 |
| Msa0549590 | Msa0609000 | 0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0549590 | Msa0610500 | 0.803835 | 2.884374e-49 | -8.615850e-47 |
| Msa0549590 | Msa0618950 | 0.808852 | 2.526182e-50 | -8.615850e-47 |
| Msa0549590 | Msa0619180 | 0.805245 | 1.465055e-49 | -8.615850e-47 |
| Msa0549590 | Msa0619210 | 0.847418 | 1.170895e-59 | -8.615850e-47 |
| Msa0549590 | Msa0619920 | 0.835742 | 1.405933e-56 | -8.615850e-47 |
| Msa0549590 | Msa0620620 | 0.817215 | 3.701536e-52 | -8.615850e-47 |
| Msa0549590 | Msa0626680 | 0.802435 | 5.617631e-49 | -8.615850e-47 |
| Msa0549590 | Msa0626940 | 0.812078 | 5.081080e-51 | -8.615850e-47 |
| Msa0549590 | Msa0646130 | 0.937729 | 2.157603e-98 | -8.615850e-47 |
| Msa0549590 | Msa0651150 | 0.807846 | 4.140570e-50 | -8.615850e-47 |
| Msa0549590 | Msa0652760 | 0.801852 | 7.405579e-49 | -8.615850e-47 |
| Msa0549590 | Msa0656580 | 0.814445 | 1.534940e-51 | -8.615850e-47 |
| Msa0549590 | Msa0677080 | 0.832837 | 7.524789e-56 | -8.615850e-47 |
| Msa0549590 | Msa0679680 | 0.803268 | 3.780559e-49 | -8.615850e-47 |
| Msa0549590 | Msa0685760 | 0.873887 | 1.037855e-67 | -8.615850e-47 |
| Msa0549590 | Msa0705390 | 0.817116 | 3.897202e-52 | -8.615850e-47 |
| Msa0549590 | Msa0706390 | 0.850434 | 1.701948e-60 | -8.615850e-47 |
| Msa0549590 | Msa0735310 | 0.820428 | 6.896685e-53 | -8.615850e-47 |
| Msa0549590 | Msa0737560 | 0.808363 | 3.214006e-50 | -8.615850e-47 |
| Msa0549590 | Msa0742510 | 0.826471 | 2.663991e-54 | -8.615850e-47 |
| Msa0549590 | Msa0744090 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0549590 | Msa0750920 | 0.800254 | 1.571118e-48 | -8.615850e-47 |
| Msa0549590 | Msa0756930 | 0.816456 | 5.480158e-52 | -8.615850e-47 |
| Msa0549590 | Msa0779550 | 0.801998 | 6.911418e-49 | -8.615850e-47 |
| Msa0549590 | Msa0781270 | 0.800567 | 1.356357e-48 | -8.615850e-47 |
| Msa0549590 | Msa0790740 | 0.867490 | 1.317047e-65 | -8.615850e-47 |
| Msa0549590 | Msa0793140 | -0.804245 | 2.369554e-49 | -8.615850e-47 |
| Msa0549590 | Msa0795660 | 0.839025 | 2.027995e-57 | -8.615850e-47 |
| Msa0549590 | Msa0821800 | 0.801275 | 9.721776e-49 | -8.615850e-47 |
| Msa0549590 | Msa0825280 | 0.812959 | 3.260139e-51 | -8.615850e-47 |
| Msa0549590 | Msa0826760 | 0.826907 | 2.097007e-54 | -8.615850e-47 |
| Msa0549590 | Msa0828660 | 0.801707 | 7.928907e-49 | -8.615850e-47 |
| Msa0549590 | Msa0830390 | 0.802356 | 5.833814e-49 | -8.615850e-47 |
| Msa0549590 | Msa0850710 | 0.806590 | 7.640370e-50 | -8.615850e-47 |
| Msa0549590 | Msa0851470 | 0.801498 | 8.751594e-49 | -8.615850e-47 |
| Msa0549590 | Msa0856910 | 0.802248 | 6.140097e-49 | -8.615850e-47 |
| Msa0549590 | Msa0861830 | 0.818253 | 2.158880e-52 | -8.615850e-47 |
| Msa0549590 | Msa0862650 | 0.802711 | 4.928924e-49 | -8.615850e-47 |
| Msa0549590 | Msa0865570 | 0.808387 | 3.174890e-50 | -8.615850e-47 |
| Msa0549590 | Msa0880040 | 0.816721 | 4.778079e-52 | -8.615850e-47 |
| Msa0549590 | Msa0881580 | 0.834310 | 3.228236e-56 | -8.615850e-47 |
| Msa0549590 | Msa0888940 | 0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa0549590 | Msa0895310 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa0549590 | Msa0899350 | 0.812273 | 4.607292e-51 | -8.615850e-47 |
| Msa0549590 | Msa0901450 | 0.806800 | 6.899755e-50 | -8.615850e-47 |
| Msa0549590 | Msa0905380 | 0.804503 | 2.093746e-49 | -8.615850e-47 |
| Msa0549590 | Msa0909010 | 0.840136 | 1.042823e-57 | -8.615850e-47 |
| Msa0549590 | Msa0925770 | 0.810879 | 9.254956e-51 | -8.615850e-47 |
| Msa0549590 | Msa0944660 | 0.800555 | 1.364272e-48 | -8.615850e-47 |
| Msa0549590 | Msa0947530 | -0.816311 | 5.904771e-52 | -8.615850e-47 |
| Msa0549590 | Msa0963020 | 0.806383 | 8.449752e-50 | -8.615850e-47 |
| Msa0549590 | Msa0965020 | 0.806235 | 9.075920e-50 | -8.615850e-47 |
| Msa0549590 | Msa0972590 | 0.815277 | 1.003918e-51 | -8.615850e-47 |
| Msa0549590 | Msa0980940 | 0.815059 | 1.122404e-51 | -8.615850e-47 |
| Msa0549590 | Msa0981430 | 0.816053 | 6.743825e-52 | -8.615850e-47 |
| Msa0549590 | Msa1001350 | 0.810773 | 9.755615e-51 | -8.615850e-47 |
| Msa0549590 | Msa1029970 | 0.829170 | 5.980114e-55 | -8.615850e-47 |
| Msa0549590 | Msa1038080 | 0.803248 | 3.817283e-49 | -8.615850e-47 |
| Msa0549590 | Msa1040800 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
| Msa0549590 | Msa1041210 | 0.803929 | 2.756930e-49 | -8.615850e-47 |
| Msa0549590 | Msa1041520 | 0.802185 | 6.325617e-49 | -8.615850e-47 |
| Msa0549590 | Msa1050420 | 0.816050 | 6.754138e-52 | -8.615850e-47 |
| Msa0549590 | Msa1093330 | 0.828790 | 7.392510e-55 | -8.615850e-47 |
| Msa0549590 | Msa1118940 | 0.805857 | 1.090041e-49 | -8.615850e-47 |
| Msa0549590 | Msa1126850 | 0.812759 | 3.606894e-51 | -8.615850e-47 |
| Msa0549590 | Msa1129690 | 0.814789 | 1.288278e-51 | -8.615850e-47 |
| Msa0549590 | Msa1133400 | 0.808629 | 2.819116e-50 | -8.615850e-47 |
| Msa0549590 | Msa1162830 | 0.840848 | 6.788975e-58 | -8.615850e-47 |
| Msa0549590 | Msa1163540 | 0.801606 | 8.318228e-49 | -8.615850e-47 |
| Msa0549590 | Msa1181170 | -0.801842 | 7.439618e-49 | -8.615850e-47 |
| Msa0549590 | Msa1182150 | 0.812770 | 3.587139e-51 | -8.615850e-47 |
| Msa0549590 | Msa1190970 | 0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0549590 | Msa1198880 | 0.810405 | 1.171858e-50 | -8.615850e-47 |
| Msa0549590 | Msa1203880 | 0.802444 | 5.593871e-49 | -8.615850e-47 |
| Msa0549590 | Msa1206360 | 0.803728 | 3.035840e-49 | -8.615850e-47 |
| Msa0549590 | Msa1223330 | 0.806052 | 9.917272e-50 | -8.615850e-47 |
| Msa0549590 | Msa1244640 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0549590 | Msa1253810 | 0.816056 | 6.733247e-52 | -8.615850e-47 |
| Msa0549590 | Msa1280620 | 0.834381 | 3.097257e-56 | -8.615850e-47 |
| Msa0549590 | Msa1286550 | 0.816632 | 5.003787e-52 | -8.615850e-47 |
| Msa0549590 | Msa1293590 | 0.833161 | 6.251680e-56 | -8.615850e-47 |
| Msa0549590 | Msa1294960 | 0.800686 | 1.283120e-48 | -8.615850e-47 |
| Msa0549590 | Msa1296300 | 0.819324 | 1.232845e-52 | -8.615850e-47 |
| Msa0549590 | Msa1306390 | 0.804681 | 1.922648e-49 | -8.615850e-47 |
| Msa0549590 | Msa1311270 | 0.810550 | 1.089988e-50 | -8.615850e-47 |
| Msa0549590 | Msa1323990 | 0.807146 | 5.828878e-50 | -8.615850e-47 |
| Msa0549590 | Msa1340830 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0549590 | Msa1355700 | 0.830956 | 2.192833e-55 | -8.615850e-47 |
| Msa0549590 | Msa1363700 | 0.803981 | 2.689629e-49 | -8.615850e-47 |
| Msa0549590 | Msa1370620 | 0.809414 | 1.914800e-50 | -8.615850e-47 |
| Msa0549590 | Msa1390740 | 0.833358 | 5.584504e-56 | -8.615850e-47 |
| Msa0549590 | Msa1403530 | -0.802856 | 4.599898e-49 | -8.615850e-47 |
| Msa0549590 | Msa1409260 | 0.804243 | 2.372417e-49 | -8.615850e-47 |
| Msa0549590 | Msa1437210 | 0.805908 | 1.063653e-49 | -8.615850e-47 |
| Msa0549590 | Msa1439700 | 0.804993 | 1.654115e-49 | -8.615850e-47 |
| Msa0549590 | Msa1464290 | 0.804340 | 2.264614e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549590 | MtrunA17_Chr4g0035371 | 83.631 | 336 | 43 | 5 | 10 | 335 | 1 | 334 | 0.0 | 549 |
| Msa0549590 | MtrunA17_Chr8g0380881 | 58.904 | 219 | 78 | 3 | 127 | 335 | 6 | 222 | 3.25e-73 | 234 |
| Msa0549590 | MtrunA17_Chr8g0380881 | 46.377 | 138 | 56 | 5 | 22 | 147 | 330 | 461 | 8.58e-24 | 102 |
| Msa0549590 | MtrunA17_Chr8g0380871 | 57.042 | 142 | 39 | 4 | 220 | 341 | 1 | 140 | 1.07e-39 | 137 |
| Msa0549590 | MtrunA17_Chr1g0168221 | 35.556 | 135 | 85 | 1 | 134 | 266 | 171 | 305 | 9.14e-20 | 91.3 |
| Msa0549590 | MtrunA17_Chr1g0186411 | 25.926 | 297 | 191 | 9 | 27 | 304 | 46 | 332 | 9.29e-20 | 91.3 |
| Msa0549590 | MtrunA17_Chr1g0186421 | 26.923 | 286 | 179 | 9 | 26 | 290 | 32 | 308 | 1.06e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549590 | AT5G52330.4 | 25.562 | 356 | 205 | 10 | 27 | 324 | 5 | 358 | 1.08e-20 | 92.8 |
| Msa0549590 | AT5G52330.3 | 25.562 | 356 | 205 | 10 | 27 | 324 | 5 | 358 | 1.08e-20 | 92.8 |
| Msa0549590 | AT5G52330.1 | 25.562 | 356 | 205 | 10 | 27 | 324 | 5 | 358 | 1.08e-20 | 92.8 |
| Msa0549590 | AT5G43560.2 | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 2.40e-20 | 93.2 |
| Msa0549590 | AT5G43560.1 | 38.636 | 132 | 79 | 1 | 133 | 262 | 175 | 306 | 2.40e-20 | 93.2 |
| Msa0549590 | AT5G52330.2 | 27.897 | 233 | 126 | 5 | 134 | 324 | 75 | 307 | 1.72e-17 | 83.2 |
| Msa0549590 | AT1G04300.5 | 33.846 | 130 | 84 | 1 | 133 | 260 | 144 | 273 | 1.84e-16 | 81.6 |
| Msa0549590 | AT1G04300.2 | 33.846 | 130 | 84 | 1 | 133 | 260 | 97 | 226 | 2.53e-16 | 81.3 |
| Msa0549590 | AT1G04300.4 | 33.846 | 130 | 84 | 1 | 133 | 260 | 155 | 284 | 2.58e-16 | 81.3 |
| Msa0549590 | AT1G04300.1 | 33.846 | 130 | 84 | 1 | 133 | 260 | 174 | 303 | 2.94e-16 | 80.9 |
| Msa0549590 | AT1G04300.3 | 33.846 | 130 | 84 | 1 | 133 | 260 | 182 | 311 | 2.95e-16 | 80.9 |
Find 59 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGCCATCCCTACTTAAA+AGG | 0.210639 | 4_1:+44800779 | Msa0549590:CDS |
| AAAACTAAAGTCATTGAAAT+TGG | 0.226783 | 4_1:+44798792 | Msa0549590:CDS |
| ATTGAAATTGGAGGATTTAA+AGG | 0.238197 | 4_1:+44798804 | Msa0549590:CDS |
| GTTCAATGAACAGAATGATT+TGG | 0.268943 | 4_1:+44800578 | Msa0549590:CDS |
| GGAAAAGGAAGATGTAATTA+AGG | 0.284760 | 4_1:+44800600 | Msa0549590:CDS |
| ACTTAATTTCATTGTGAATC+AGG | 0.285562 | 4_1:-44799495 | None:intergenic |
| GGGACAATGCTTTCATATAT+AGG | 0.287041 | 4_1:-44800823 | None:intergenic |
| CTCTCTCAGGTAGGGATATT+CGG | 0.292534 | 4_1:+44798658 | Msa0549590:intron |
| TTGTTCTTGACTATCTATTC+AGG | 0.306654 | 4_1:+44800875 | Msa0549590:CDS |
| GTATCGAGCTGAGCTTCTTT+TGG | 0.317600 | 4_1:+44799405 | Msa0549590:CDS |
| TTCAATGAACAGAATGATTT+GGG | 0.320198 | 4_1:+44800579 | Msa0549590:CDS |
| GAATTGCAGATTCAGATTCT+TGG | 0.343032 | 4_1:+44799223 | Msa0549590:CDS |
| GAAAGCATTGTCCCACAGTT+TGG | 0.376185 | 4_1:+44800832 | Msa0549590:CDS |
| TCATCTGGATAATTCGGCTT+TGG | 0.377585 | 4_1:-44798759 | None:intergenic |
| AATTGCAGATTCAGATTCTT+GGG | 0.385387 | 4_1:+44799224 | Msa0549590:CDS |
| TCATCGTCATCTGGATAATT+CGG | 0.387151 | 4_1:-44798765 | None:intergenic |
| AATTTCACAGCTGTTCATAC+TGG | 0.387505 | 4_1:+44798902 | Msa0549590:CDS |
| CGATGGTTATGAATCAATAA+AGG | 0.388786 | 4_1:+44800690 | Msa0549590:CDS |
| TTGAAATTGGAGGATTTAAA+GGG | 0.394663 | 4_1:+44798805 | Msa0549590:CDS |
| TATGAATTTGATTGTGAAGA+AGG | 0.409577 | 4_1:+44799169 | Msa0549590:CDS |
| GAACAGAATGATTTGGGAAA+AGG | 0.412113 | 4_1:+44800585 | Msa0549590:CDS |
| CTCTATTCTATTCTTACGAT+CGG | 0.438697 | 4_1:-44798367 | None:intergenic |
| TACCGAAACGTTTAGTTAGT+AGG | 0.465892 | 4_1:-44799015 | None:intergenic |
| TGTACTTTCATGATAGAAAG+TGG | 0.473343 | 4_1:+44800550 | Msa0549590:CDS |
| GGATAAGTTTGTCATATTTG+AGG | 0.483069 | 4_1:+44800726 | Msa0549590:CDS |
| TCACTTTGTGATGGTTATAC+CGG | 0.485058 | 4_1:+44799145 | Msa0549590:CDS |
| GTGACTCAATCGAACTGAAA+AGG | 0.486271 | 4_1:+44801398 | Msa0549590:exon |
| ACTTCTTTACAAGGAGAGGC+TGG | 0.489282 | 4_1:-44799384 | None:intergenic |
| CAGCTCGATACTTCTTTACA+AGG | 0.495077 | 4_1:-44799393 | None:intergenic |
| AAACTAGTATTAGGTTTAGG+TGG | 0.496885 | 4_1:-44798333 | None:intergenic |
| GTTTAGTTAGTAGGTAGTCA+TGG | 0.496896 | 4_1:-44799006 | None:intergenic |
| ACTAAAGTCATTGAAATTGG+AGG | 0.506952 | 4_1:+44798795 | Msa0549590:CDS |
| TACCTACTAACTAAACGTTT+CGG | 0.515447 | 4_1:+44799013 | Msa0549590:CDS |
| TTTAGTTAGTAGGTAGTCAT+GGG | 0.517016 | 4_1:-44799005 | None:intergenic |
| TGTGACATCTCCTTTGCTAA+TGG | 0.517589 | 4_1:+44800657 | Msa0549590:CDS |
| TGTGCCATCCCTACTTAAAA+GGG | 0.523105 | 4_1:+44800780 | Msa0549590:CDS |
| TTCACAATCAAATTCATAGC+CGG | 0.524784 | 4_1:-44799164 | None:intergenic |
| CTATTCCACTCACTTTGTGA+TGG | 0.531983 | 4_1:+44799136 | Msa0549590:CDS |
| AGATGTAATTAAGGAAGCCT+TGG | 0.532966 | 4_1:+44800609 | Msa0549590:CDS |
| TTGTCATATTTGAGGACGAA+TGG | 0.538916 | 4_1:+44800734 | Msa0549590:CDS |
| TGATTCACAATGAAATTAAG+TGG | 0.540946 | 4_1:+44799497 | Msa0549590:CDS |
| TGAAAGAAAGATGAAGGTGA+AGG | 0.552232 | 4_1:+44798554 | Msa0549590:CDS |
| CGATACTTCTTTACAAGGAG+AGG | 0.559558 | 4_1:-44799388 | None:intergenic |
| AAGAAAGATGAAGGTGAAGG+AGG | 0.565852 | 4_1:+44798557 | Msa0549590:CDS |
| ACAATGAAATTAAGTGGCCA+AGG | 0.567859 | 4_1:+44799503 | Msa0549590:CDS |
| AATAAAGGCTAACAATACTA+CGG | 0.575555 | 4_1:+44800705 | Msa0549590:CDS |
| TATAATATCTCCATTAGCAA+AGG | 0.582185 | 4_1:-44800667 | None:intergenic |
| TGAGGACGAATGGTTTGAGT+TGG | 0.583268 | 4_1:+44800744 | Msa0549590:CDS |
| ACAGTTTGGTTGCATGATTG+TGG | 0.586729 | 4_1:+44800846 | Msa0549590:CDS |
| GAATAGAATAGAGAGAGAAG+CGG | 0.587370 | 4_1:+44798377 | Msa0549590:five_prime_UTR |
| GTGCTCAGTGCATAAAACAT+TGG | 0.590886 | 4_1:-44798965 | None:intergenic |
| CGGCGACAACGCAGAAACAC+AGG | 0.601453 | 4_1:+44798397 | Msa0549590:five_prime_UTR |
| CAATCATGCAACCAAACTGT+GGG | 0.620049 | 4_1:-44800843 | None:intergenic |
| ACAATCATGCAACCAAACTG+TGG | 0.621941 | 4_1:-44800844 | None:intergenic |
| TATAACCATCACAAAGTGAG+TGG | 0.636863 | 4_1:-44799141 | None:intergenic |
| TTAGTTAGTAGGTAGTCATG+GGG | 0.642431 | 4_1:-44799004 | None:intergenic |
| CTAATGGAGATATTATACGA+TGG | 0.661760 | 4_1:+44800673 | Msa0549590:CDS |
| TAGTTAGTAGGTAGTCATGG+GGG | 0.756976 | 4_1:-44799003 | None:intergenic |
| AGATAAATCAAATTTCAACG+AGG | 0.780113 | 4_1:-44798927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGCTTATAATTAATTATA+CGG | - | chr4_1:44799300-44799319 | None:intergenic | 10.0% |
| !! | TATAATTAATTATAAGCATT+GGG | + | chr4_1:44799300-44799319 | Msa0549590:intron | 10.0% |
| !! | TATTCAACAAAAAAAAAAAA+CGG | + | chr4_1:44800460-44800479 | Msa0549590:intron | 10.0% |
| !!! | TATTTATTTTTGAAGAAAAA+TGG | + | chr4_1:44801072-44801091 | Msa0549590:intron | 10.0% |
| !! | GTATAATTAATTATAAGCAT+TGG | + | chr4_1:44799299-44799318 | Msa0549590:intron | 15.0% |
| !! | AATTACTAGTAGAAAAAAAA+AGG | - | chr4_1:44799538-44799557 | None:intergenic | 15.0% |
| !! | CAAAAAGATATAACAAATTA+TGG | + | chr4_1:44799870-44799889 | Msa0549590:intron | 15.0% |
| !!! | ATTAATTATTCCTATTTCTA+AGG | - | chr4_1:44800258-44800277 | None:intergenic | 15.0% |
| !! | AAATAGGAATAATTAATTAC+AGG | + | chr4_1:44800261-44800280 | Msa0549590:intron | 15.0% |
| !! | AATGTGATATTCTTAATTTA+TGG | + | chr4_1:44800408-44800427 | Msa0549590:intron | 15.0% |
| !! | ATGTGATATTCTTAATTTAT+GGG | + | chr4_1:44800409-44800428 | Msa0549590:intron | 15.0% |
| !! | ATTCAACAAAAAAAAAAAAC+GGG | + | chr4_1:44800461-44800480 | Msa0549590:intron | 15.0% |
| !! | GTCAATAAATAAATCATATA+TGG | - | chr4_1:44800903-44800922 | None:intergenic | 15.0% |
| !! | ATCAAATAGTTAACAAAATA+AGG | - | chr4_1:44801215-44801234 | None:intergenic | 15.0% |
| !!! | CATTTTTTTTACTTTTTTCT+CGG | - | chr4_1:44801427-44801446 | None:intergenic | 15.0% |
| !! | GAGAAAAAAGTAAAAAAAAT+GGG | + | chr4_1:44801426-44801445 | Msa0549590:three_prime_UTR | 15.0% |
| !! | AAAAAACTAGTATTAGGTTT+AGG | - | chr4_1:44798339-44798358 | None:intergenic | 20.0% |
| !! | TTGCTAAAAAAACTAGTATT+AGG | - | chr4_1:44798345-44798364 | None:intergenic | 20.0% |
| !! | AAAACTAAAGTCATTGAAAT+TGG | + | chr4_1:44798792-44798811 | Msa0549590:CDS | 20.0% |
| !! | AAAAAAGGAAAAAAATACCT+TGG | - | chr4_1:44799523-44799542 | None:intergenic | 20.0% |
| !! | TATTGTTTGTGTCAATTATT+TGG | - | chr4_1:44799846-44799865 | None:intergenic | 20.0% |
| !! | AAAGATATAACAAATTATGG+TGG | + | chr4_1:44799873-44799892 | Msa0549590:intron | 20.0% |
| !!! | ATATTTTTTATGTGAACTGT+GGG | + | chr4_1:44799905-44799924 | Msa0549590:intron | 20.0% |
| !! | TAACATTGCAGTATTTATAA+GGG | - | chr4_1:44799938-44799957 | None:intergenic | 20.0% |
| !! | TTAACATTGCAGTATTTATA+AGG | - | chr4_1:44799939-44799958 | None:intergenic | 20.0% |
| !!! | TATTGATTTGAGTAACTAAA+TGG | - | chr4_1:44800155-44800174 | None:intergenic | 20.0% |
| !! | TTTGTTGAATAACAAAACAT+GGG | - | chr4_1:44800451-44800470 | None:intergenic | 20.0% |
| !!! | TTTTGTTGAATAACAAAACA+TGG | - | chr4_1:44800452-44800471 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCACATTTTTCT+CGG | - | chr4_1:44801143-44801162 | None:intergenic | 20.0% |
| !! | GAGAAAAATGTGAAAAAAAT+GGG | + | chr4_1:44801142-44801161 | Msa0549590:CDS | 20.0% |
| !!! | ATTATTTATTTAATGGATGC+AGG | + | chr4_1:44801347-44801366 | Msa0549590:intron | 20.0% |
| !! | CGAGAAAAAAGTAAAAAAAA+TGG | + | chr4_1:44801425-44801444 | Msa0549590:three_prime_UTR | 20.0% |
| ! | AGTGTTTATGTGTATTGTAT+TGG | + | chr4_1:44798473-44798492 | Msa0549590:intron | 25.0% |
| !!! | TGATTTTGAAAGAAAGATGA+AGG | + | chr4_1:44798548-44798567 | Msa0549590:CDS | 25.0% |
| ! | TAAGTATGAGTATCAACAAA+AGG | - | chr4_1:44798625-44798644 | None:intergenic | 25.0% |
| ! | ATTGAAATTGGAGGATTTAA+AGG | + | chr4_1:44798804-44798823 | Msa0549590:CDS | 25.0% |
| ! | TTGAAATTGGAGGATTTAAA+GGG | + | chr4_1:44798805-44798824 | Msa0549590:CDS | 25.0% |
| ! | AGATAAATCAAATTTCAACG+AGG | - | chr4_1:44798930-44798949 | None:intergenic | 25.0% |
| ! | TATGAATTTGATTGTGAAGA+AGG | + | chr4_1:44799169-44799188 | Msa0549590:CDS | 25.0% |
| ! | TTCTTATGTATGCATTATGT+TGG | + | chr4_1:44799251-44799270 | Msa0549590:intron | 25.0% |
| ! | ACTTAATTTCATTGTGAATC+AGG | - | chr4_1:44799498-44799517 | None:intergenic | 25.0% |
| ! | TGATTCACAATGAAATTAAG+TGG | + | chr4_1:44799497-44799516 | Msa0549590:CDS | 25.0% |
| !!! | GATATTTTTTATGTGAACTG+TGG | + | chr4_1:44799904-44799923 | Msa0549590:intron | 25.0% |
| ! | AATACTGCAATGTTAAACAA+TGG | + | chr4_1:44799943-44799962 | Msa0549590:intron | 25.0% |
| ! | TTGTAAATTTCATTACTGCA+AGG | - | chr4_1:44799984-44800003 | None:intergenic | 25.0% |
| ! | GGAATAATTAATTACAGGAT+AGG | + | chr4_1:44800266-44800285 | Msa0549590:intron | 25.0% |
| !! | TTTGTATTTGATGCTTTTGT+AGG | + | chr4_1:44800355-44800374 | Msa0549590:intron | 25.0% |
| ! | TTAGCAAACAAAAAACTTGA+GGG | - | chr4_1:44800496-44800515 | None:intergenic | 25.0% |
| ! | ATTAGCAAACAAAAAACTTG+AGG | - | chr4_1:44800497-44800516 | None:intergenic | 25.0% |
| ! | TTCAATGAACAGAATGATTT+GGG | + | chr4_1:44800579-44800598 | Msa0549590:CDS | 25.0% |
| ! | TAAAAAAAATTGATGCACCA+AGG | - | chr4_1:44800629-44800648 | None:intergenic | 25.0% |
| !!! | GTGCATCAATTTTTTTTAGA+TGG | + | chr4_1:44800631-44800650 | Msa0549590:CDS | 25.0% |
| ! | TATAATATCTCCATTAGCAA+AGG | - | chr4_1:44800670-44800689 | None:intergenic | 25.0% |
| ! | AATAAAGGCTAACAATACTA+CGG | + | chr4_1:44800705-44800724 | Msa0549590:CDS | 25.0% |
| ! | AATATAAAGAAACAAGACTC+AGG | - | chr4_1:44800925-44800944 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGAAAAATGGAGA+AGG | + | chr4_1:44801078-44801097 | Msa0549590:intron | 25.0% |
| ! | CGAGAAAAATGTGAAAAAAA+TGG | + | chr4_1:44801141-44801160 | Msa0549590:CDS | 25.0% |
| !!! | TGATTTTTGCTGTAAATAGA+CGG | + | chr4_1:44801183-44801202 | Msa0549590:intron | 25.0% |
| ! | TATTTGATAGAAACTGTTTG+TGG | + | chr4_1:44801227-44801246 | Msa0549590:intron | 25.0% |
| AAACTAGTATTAGGTTTAGG+TGG | - | chr4_1:44798336-44798355 | None:intergenic | 30.0% | |
| CTCTATTCTATTCTTACGAT+CGG | - | chr4_1:44798370-44798389 | None:intergenic | 30.0% | |
| GTTTATGTGTATTGTATTGG+TGG | + | chr4_1:44798476-44798495 | Msa0549590:intron | 30.0% | |
| ! | TATTGGTGGTATGAGATTAT+AGG | + | chr4_1:44798490-44798509 | Msa0549590:intron | 30.0% |
| ! | ATTGGTGGTATGAGATTATA+GGG | + | chr4_1:44798491-44798510 | Msa0549590:intron | 30.0% |
| !!! | TTATAGGGTTTTGTTTCAAC+AGG | + | chr4_1:44798506-44798525 | Msa0549590:intron | 30.0% |
| ACTAAAGTCATTGAAATTGG+AGG | + | chr4_1:44798795-44798814 | Msa0549590:CDS | 30.0% | |
| AAAGATTGATATGCCAATAC+AGG | + | chr4_1:44798879-44798898 | Msa0549590:intron | 30.0% | |
| TTTAGTTAGTAGGTAGTCAT+GGG | - | chr4_1:44799008-44799027 | None:intergenic | 30.0% | |
| TACCTACTAACTAAACGTTT+CGG | + | chr4_1:44799013-44799032 | Msa0549590:CDS | 30.0% | |
| TTCACAATCAAATTCATAGC+CGG | - | chr4_1:44799167-44799186 | None:intergenic | 30.0% | |
| AATTGCAGATTCAGATTCTT+GGG | + | chr4_1:44799224-44799243 | Msa0549590:CDS | 30.0% | |
| TTAGCATGTCTTAGTTGATT+CGG | + | chr4_1:44799625-44799644 | Msa0549590:intron | 30.0% | |
| !!! | TTGTTTTTGAAGCAATGTCT+TGG | + | chr4_1:44799661-44799680 | Msa0549590:intron | 30.0% |
| ! | TTCATCATTTGTTAACCCAA+AGG | + | chr4_1:44799695-44799714 | Msa0549590:intron | 30.0% |
| ! | TCATCATTTGTTAACCCAAA+GGG | + | chr4_1:44799696-44799715 | Msa0549590:intron | 30.0% |
| GCATTACGAGATATTCATAA+TGG | + | chr4_1:44799718-44799737 | Msa0549590:intron | 30.0% | |
| ! | ACTGAATTTTGAACTCATGA+AGG | - | chr4_1:44799744-44799763 | None:intergenic | 30.0% |
| AAATGTTGTACAAACGTTGT+AGG | + | chr4_1:44800324-44800343 | Msa0549590:intron | 30.0% | |
| TGTACTTTCATGATAGAAAG+TGG | + | chr4_1:44800550-44800569 | Msa0549590:CDS | 30.0% | |
| GTTCAATGAACAGAATGATT+TGG | + | chr4_1:44800578-44800597 | Msa0549590:CDS | 30.0% | |
| GGAAAAGGAAGATGTAATTA+AGG | + | chr4_1:44800600-44800619 | Msa0549590:CDS | 30.0% | |
| CTAATGGAGATATTATACGA+TGG | + | chr4_1:44800673-44800692 | Msa0549590:CDS | 30.0% | |
| CGATGGTTATGAATCAATAA+AGG | + | chr4_1:44800690-44800709 | Msa0549590:CDS | 30.0% | |
| GGATAAGTTTGTCATATTTG+AGG | + | chr4_1:44800726-44800745 | Msa0549590:CDS | 30.0% | |
| !! | ATCAACAACCCTTTTAAGTA+GGG | - | chr4_1:44800791-44800810 | None:intergenic | 30.0% |
| !! | TATCAACAACCCTTTTAAGT+AGG | - | chr4_1:44800792-44800811 | None:intergenic | 30.0% |
| TTGTTCTTGACTATCTATTC+AGG | + | chr4_1:44800875-44800894 | Msa0549590:CDS | 30.0% | |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr4_1:44801154-44801173 | Msa0549590:CDS | 30.0% | |
| !! | GATTTTTGCTGTAAATAGAC+GGG | + | chr4_1:44801184-44801203 | Msa0549590:intron | 30.0% |
| !! | ATTTTTGCTGTAAATAGACG+GGG | + | chr4_1:44801185-44801204 | Msa0549590:intron | 30.0% |
| AAAAAAATGGGAGAAGCAAA+AGG | + | chr4_1:44801154-44801173 | Msa0549590:CDS | 30.0% | |
| GAATAGAATAGAGAGAGAAG+CGG | + | chr4_1:44798377-44798396 | Msa0549590:five_prime_UTR | 35.0% | |
| TGAAAGAAAGATGAAGGTGA+AGG | + | chr4_1:44798554-44798573 | Msa0549590:CDS | 35.0% | |
| TCATCGTCATCTGGATAATT+CGG | - | chr4_1:44798768-44798787 | None:intergenic | 35.0% | |
| ! | GTTTTACAATCATCGTCATC+TGG | - | chr4_1:44798777-44798796 | None:intergenic | 35.0% |
| AATTTCACAGCTGTTCATAC+TGG | + | chr4_1:44798902-44798921 | Msa0549590:CDS | 35.0% | |
| TTAGTTAGTAGGTAGTCATG+GGG | - | chr4_1:44799007-44799026 | None:intergenic | 35.0% | |
| GTTTAGTTAGTAGGTAGTCA+TGG | - | chr4_1:44799009-44799028 | None:intergenic | 35.0% | |
| TACCGAAACGTTTAGTTAGT+AGG | - | chr4_1:44799018-44799037 | None:intergenic | 35.0% | |
| TACTAACTAAACGTTTCGGT+AGG | + | chr4_1:44799017-44799036 | Msa0549590:intron | 35.0% | |
| TATAACCATCACAAAGTGAG+TGG | - | chr4_1:44799144-44799163 | None:intergenic | 35.0% | |
| TCACTTTGTGATGGTTATAC+CGG | + | chr4_1:44799145-44799164 | Msa0549590:CDS | 35.0% | |
| GAATTGCAGATTCAGATTCT+TGG | + | chr4_1:44799223-44799242 | Msa0549590:CDS | 35.0% | |
| CAATCATACAATGAGTTGCA+TGG | - | chr4_1:44799338-44799357 | None:intergenic | 35.0% | |
| ACAATGAAATTAAGTGGCCA+AGG | + | chr4_1:44799503-44799522 | Msa0549590:CDS | 35.0% | |
| CAACTAAGACATGCTAAACA+TGG | - | chr4_1:44799622-44799641 | None:intergenic | 35.0% | |
| AATATCTCGTAATGCCCTTT+GGG | - | chr4_1:44799713-44799732 | None:intergenic | 35.0% | |
| ATCATCAGATTCGAATGAGA+GGG | - | chr4_1:44799780-44799799 | None:intergenic | 35.0% | |
| TATCATCAGATTCGAATGAG+AGG | - | chr4_1:44799781-44799800 | None:intergenic | 35.0% | |
| CTGCAATGTTAAACAATGGA+TGG | + | chr4_1:44799947-44799966 | Msa0549590:intron | 35.0% | |
| TTCCACAATTTGATATTCCC+GGG | - | chr4_1:44800209-44800228 | None:intergenic | 35.0% | |
| CTTCCACAATTTGATATTCC+CGG | - | chr4_1:44800210-44800229 | None:intergenic | 35.0% | |
| ! | GAACAGAATGATTTGGGAAA+AGG | + | chr4_1:44800585-44800604 | Msa0549590:CDS | 35.0% |
| AGATGTAATTAAGGAAGCCT+TGG | + | chr4_1:44800609-44800628 | Msa0549590:CDS | 35.0% | |
| TTGTCATATTTGAGGACGAA+TGG | + | chr4_1:44800734-44800753 | Msa0549590:CDS | 35.0% | |
| GGGACAATGCTTTCATATAT+AGG | - | chr4_1:44800826-44800845 | None:intergenic | 35.0% | |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr4_1:44800993-44801012 | Msa0549590:intron | 35.0% |
| ! | TGTGATACAATAGTGTTGCT+AGG | + | chr4_1:44800993-44801012 | Msa0549590:intron | 35.0% |
| AAGAAAGATGAAGGTGAAGG+AGG | + | chr4_1:44798557-44798576 | Msa0549590:CDS | 40.0% | |
| TCATCTGGATAATTCGGCTT+TGG | - | chr4_1:44798762-44798781 | None:intergenic | 40.0% | |
| CAGCTGTGAAATTCCTGTAT+TGG | - | chr4_1:44798895-44798914 | None:intergenic | 40.0% | |
| GTGCTCAGTGCATAAAACAT+TGG | - | chr4_1:44798968-44798987 | None:intergenic | 40.0% | |
| TAGTTAGTAGGTAGTCATGG+GGG | - | chr4_1:44799006-44799025 | None:intergenic | 40.0% | |
| CTATTCCACTCACTTTGTGA+TGG | + | chr4_1:44799136-44799155 | Msa0549590:CDS | 40.0% | |
| ! | AGAAGGTTTTCTTGACGATG+AGG | + | chr4_1:44799186-44799205 | Msa0549590:CDS | 40.0% |
| ! | GAAGGTTTTCTTGACGATGA+GGG | + | chr4_1:44799187-44799206 | Msa0549590:CDS | 40.0% |
| CGATACTTCTTTACAAGGAG+AGG | - | chr4_1:44799391-44799410 | None:intergenic | 40.0% | |
| CAGCTCGATACTTCTTTACA+AGG | - | chr4_1:44799396-44799415 | None:intergenic | 40.0% | |
| GAATATCTCGTAATGCCCTT+TGG | - | chr4_1:44799714-44799733 | None:intergenic | 40.0% | |
| AGAACCATTCTCATCTCAGT+GGG | - | chr4_1:44800037-44800056 | None:intergenic | 40.0% | |
| !!! | GAAGAAGAGCATACTGGTTT+TGG | - | chr4_1:44800085-44800104 | None:intergenic | 40.0% |
| TGAGTAACTAAATGGACACG+TGG | - | chr4_1:44800147-44800166 | None:intergenic | 40.0% | |
| CGGGAATATCAAATTGTGGA+AGG | + | chr4_1:44800208-44800227 | Msa0549590:intron | 40.0% | |
| AAGGACTAAGTCAATTCCAC+TGG | + | chr4_1:44800227-44800246 | Msa0549590:intron | 40.0% | |
| !! | TATTTCTAAGGAAGTGCCAG+TGG | - | chr4_1:44800246-44800265 | None:intergenic | 40.0% |
| ACTGGCACTTCCTTAGAAAT+AGG | + | chr4_1:44800245-44800264 | Msa0549590:intron | 40.0% | |
| TGTGACATCTCCTTTGCTAA+TGG | + | chr4_1:44800657-44800676 | Msa0549590:CDS | 40.0% | |
| ATGTGCCATCCCTACTTAAA+AGG | + | chr4_1:44800779-44800798 | Msa0549590:CDS | 40.0% | |
| TGTGCCATCCCTACTTAAAA+GGG | + | chr4_1:44800780-44800799 | Msa0549590:CDS | 40.0% | |
| !! | ACAACCCTTTTAAGTAGGGA+TGG | - | chr4_1:44800787-44800806 | None:intergenic | 40.0% |
| CAATCATGCAACCAAACTGT+GGG | - | chr4_1:44800846-44800865 | None:intergenic | 40.0% | |
| ACAATCATGCAACCAAACTG+TGG | - | chr4_1:44800847-44800866 | None:intergenic | 40.0% | |
| ACAGTTTGGTTGCATGATTG+TGG | + | chr4_1:44800846-44800865 | Msa0549590:CDS | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr4_1:44801000-44801019 | Msa0549590:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr4_1:44801042-44801061 | None:intergenic | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | + | chr4_1:44801000-44801019 | Msa0549590:intron | 40.0% |
| TAGAATATGATCAGCCTGCA+CGG | - | chr4_1:44801042-44801061 | None:intergenic | 40.0% | |
| GTGACTCAATCGAACTGAAA+AGG | + | chr4_1:44801398-44801417 | Msa0549590:exon | 40.0% | |
| TTGTTCTCTCTCTCTCTCTC+AGG | + | chr4_1:44798645-44798664 | Msa0549590:intron | 45.0% | |
| CTCTCTCAGGTAGGGATATT+CGG | + | chr4_1:44798658-44798677 | Msa0549590:intron | 45.0% | |
| ACTTCTTTACAAGGAGAGGC+TGG | - | chr4_1:44799387-44799406 | None:intergenic | 45.0% | |
| ! | GTATCGAGCTGAGCTTCTTT+TGG | + | chr4_1:44799405-44799424 | Msa0549590:CDS | 45.0% |
| ! | GGGAGAGTATGCTGAAATCA+GGG | - | chr4_1:44799804-44799823 | None:intergenic | 45.0% |
| AACCATTCTCATCTCAGTGG+GGG | - | chr4_1:44800035-44800054 | None:intergenic | 45.0% | |
| GAACCATTCTCATCTCAGTG+GGG | - | chr4_1:44800036-44800055 | None:intergenic | 45.0% | |
| GAGAACCATTCTCATCTCAG+TGG | - | chr4_1:44800038-44800057 | None:intergenic | 45.0% | |
| !!! | CTGGTTTTGGAGATGGAAGT+GGG | - | chr4_1:44800072-44800091 | None:intergenic | 45.0% |
| !!! | ACTGGTTTTGGAGATGGAAG+TGG | - | chr4_1:44800073-44800092 | None:intergenic | 45.0% |
| !!! | GAGCATACTGGTTTTGGAGA+TGG | - | chr4_1:44800079-44800098 | None:intergenic | 45.0% |
| GAGGAAAAGATTGACCCAAG+GGG | - | chr4_1:44800111-44800130 | None:intergenic | 45.0% | |
| GGAGGAAAAGATTGACCCAA+GGG | - | chr4_1:44800112-44800131 | None:intergenic | 45.0% | |
| TGGAGGAAAAGATTGACCCA+AGG | - | chr4_1:44800113-44800132 | None:intergenic | 45.0% | |
| CATCACTCTGTTGTCAAACG+CGG | + | chr4_1:44800178-44800197 | Msa0549590:intron | 45.0% | |
| CAATTTGATATTCCCGGGAG+CGG | - | chr4_1:44800204-44800223 | None:intergenic | 45.0% | |
| CTCCCGGGAATATCAAATTG+TGG | + | chr4_1:44800204-44800223 | Msa0549590:intron | 45.0% | |
| TGAGGACGAATGGTTTGAGT+TGG | + | chr4_1:44800744-44800763 | Msa0549590:CDS | 45.0% | |
| !! | GAAAGCATTGTCCCACAGTT+TGG | + | chr4_1:44800832-44800851 | Msa0549590:CDS | 45.0% |
| !!! | TGATATTTTATTTATTATTA+TGG | + | chr4_1:44799564-44799583 | Msa0549590:intron | 5.0% |
| !! | TATTCTAATTATTTATTTAA+TGG | + | chr4_1:44801340-44801359 | Msa0549590:intron | 5.0% |
| TCTCTCTCTCTCTCTCAGGT+AGG | + | chr4_1:44798649-44798668 | Msa0549590:intron | 50.0% | |
| CTCTCTCTCTCTCTCAGGTA+GGG | + | chr4_1:44798650-44798669 | Msa0549590:intron | 50.0% | |
| ! | GGGGAGAGTATGCTGAAATC+AGG | - | chr4_1:44799805-44799824 | None:intergenic | 50.0% |
| ATTTCAGCATACTCTCCCCC+AGG | + | chr4_1:44799806-44799825 | Msa0549590:intron | 50.0% | |
| TGGCATTTCGAGCTCAACCT+GGG | - | chr4_1:44799826-44799845 | None:intergenic | 50.0% | |
| TTGGCATTTCGAGCTCAACC+TGG | - | chr4_1:44799827-44799846 | None:intergenic | 50.0% | |
| ACCATTCTCATCTCAGTGGG+GGG | - | chr4_1:44800034-44800053 | None:intergenic | 50.0% | |
| TTTGGAGATGGAAGTGGGAC+TGG | - | chr4_1:44800067-44800086 | None:intergenic | 50.0% | |
| ! | GGGTGTGAAGAAGAGCATAC+TGG | - | chr4_1:44800091-44800110 | None:intergenic | 50.0% |
| ATGCTCTTCTTCACACCCCT+TGG | + | chr4_1:44800093-44800112 | Msa0549590:intron | 50.0% | |
| TGCTCTTCTTCACACCCCTT+GGG | + | chr4_1:44800094-44800113 | Msa0549590:intron | 50.0% | |
| TAAATGGACACGTGGCAGCA+GGG | - | chr4_1:44800139-44800158 | None:intergenic | 50.0% | |
| TGTTATCCAGTAGACCGTGC+AGG | + | chr4_1:44801025-44801044 | Msa0549590:intron | 50.0% | |
| TGATATCCAGTAGACCGTGC+AGG | + | chr4_1:44801310-44801329 | Msa0549590:intron | 50.0% | |
| GCATTTCGAGCTCAACCTGG+GGG | - | chr4_1:44799824-44799843 | None:intergenic | 55.0% | |
| GGCATTTCGAGCTCAACCTG+GGG | - | chr4_1:44799825-44799844 | None:intergenic | 55.0% | |
| AAATGGACACGTGGCAGCAG+GGG | - | chr4_1:44800138-44800157 | None:intergenic | 55.0% | |
| CTAAATGGACACGTGGCAGC+AGG | - | chr4_1:44800140-44800159 | None:intergenic | 55.0% | |
| CGGCGACAACGCAGAAACAC+AGG | + | chr4_1:44798397-44798416 | Msa0549590:five_prime_UTR | 60.0% | |
| !! | CTCAGTGGGGGGCATTCTCT+TGG | - | chr4_1:44800023-44800042 | None:intergenic | 60.0% |
| GCCCCCCACTGAGATGAGAA+TGG | + | chr4_1:44800030-44800049 | Msa0549590:intron | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr4_1:44801034-44801053 | None:intergenic | 60.0% | |
| GATCAGCCTGCACGGTCTAC+TGG | - | chr4_1:44801034-44801053 | None:intergenic | 60.0% | |
| ACGTGGCAGCAGGGGAATGG+AGG | - | chr4_1:44800130-44800149 | None:intergenic | 65.0% | |
| GACACGTGGCAGCAGGGGAA+TGG | - | chr4_1:44800133-44800152 | None:intergenic | 65.0% | |
| TTGTCAAACGCGGCCGCTCC+CGG | + | chr4_1:44800188-44800207 | Msa0549590:intron | 65.0% | |
| TGTCAAACGCGGCCGCTCCC+GGG | + | chr4_1:44800189-44800208 | Msa0549590:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 44798306 | 44801469 | 44798306 | ID=Msa0549590;Name=Msa0549590 |
| chr4_1 | mRNA | 44798306 | 44801469 | 44798306 | ID=Msa0549590-mRNA-1;Parent=Msa0549590;Name=Msa0549590-mRNA-1;_AED=0.20;_eAED=0.20;_QI=122|1|1|1|0.87|0.77|9|54|365 |
| chr4_1 | exon | 44798306 | 44798418 | 44798306 | ID=Msa0549590-mRNA-1:exon:11697;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44798528 | 44798588 | 44798528 | ID=Msa0549590-mRNA-1:exon:11698;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44798667 | 44798826 | 44798667 | ID=Msa0549590-mRNA-1:exon:11699;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44798901 | 44799034 | 44798901 | ID=Msa0549590-mRNA-1:exon:11700;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44799134 | 44799245 | 44799134 | ID=Msa0549590-mRNA-1:exon:11701;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44799372 | 44799524 | 44799372 | ID=Msa0549590-mRNA-1:exon:11702;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44800546 | 44800896 | 44800546 | ID=Msa0549590-mRNA-1:exon:11703;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44801087 | 44801175 | 44801087 | ID=Msa0549590-mRNA-1:exon:11704;Parent=Msa0549590-mRNA-1 |
| chr4_1 | exon | 44801369 | 44801469 | 44801369 | ID=Msa0549590-mRNA-1:exon:11705;Parent=Msa0549590-mRNA-1 |
| chr4_1 | five_prime_UTR | 44798306 | 44798418 | 44798306 | ID=Msa0549590-mRNA-1:five_prime_utr;Parent=Msa0549590-mRNA-1 |
| chr4_1 | five_prime_UTR | 44798528 | 44798536 | 44798528 | ID=Msa0549590-mRNA-1:five_prime_utr;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44798537 | 44798588 | 44798537 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44798667 | 44798826 | 44798667 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44798901 | 44799034 | 44798901 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44799134 | 44799245 | 44799134 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44799372 | 44799524 | 44799372 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44800546 | 44800896 | 44800546 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44801087 | 44801175 | 44801087 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | CDS | 44801369 | 44801415 | 44801369 | ID=Msa0549590-mRNA-1:cds;Parent=Msa0549590-mRNA-1 |
| chr4_1 | three_prime_UTR | 44801416 | 44801469 | 44801416 | ID=Msa0549590-mRNA-1:three_prime_utr;Parent=Msa0549590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
