AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791710 MtrunA17_Chr3g0141431 92.344 418 23 4 1 418 1 409 0.0 721
Msa0791710 MtrunA17_Chr8g0373541 48.372 430 151 10 15 381 26 447 1.63e-117 352
Msa0791710 MtrunA17_Chr1g0185121 52.648 321 128 7 15 331 33 333 5.55e-104 315
Msa0791710 MtrunA17_Chr1g0181381 74.860 179 45 0 5 183 21 199 6.33e-103 314
Msa0791710 MtrunA17_Chr4g0029521 45.879 364 149 8 18 362 34 368 7.73e-103 314
Msa0791710 MtrunA17_Chr8g0342421 49.292 353 133 9 16 355 56 375 4.11e-101 310
Msa0791710 MtrunA17_Chr2g0330171 50.000 334 134 7 20 351 44 346 5.64e-101 308
Msa0791710 MtrunA17_Chr1g0191991 54.717 318 113 8 19 329 60 353 6.97e-101 310
Msa0791710 MtrunA17_Chr4g0040571 71.429 182 51 1 9 190 26 206 1.63e-99 305
Msa0791710 MtrunA17_Chr7g0263941 50.610 328 104 8 18 333 30 311 4.62e-99 301
Msa0791710 MtrunA17_Chr1g0162971 42.963 405 180 12 22 392 41 428 3.48e-97 298
Msa0791710 MtrunA17_Chr1g0199101 76.829 164 37 1 20 183 45 207 7.79e-97 300
Msa0791710 MtrunA17_Chr7g0268961 52.258 310 116 7 32 330 32 320 8.20e-97 298
Msa0791710 MtrunA17_Chr1g0163001 73.054 167 44 1 20 186 41 206 7.47e-94 292
Msa0791710 MtrunA17_Chr2g0326381 72.892 166 45 0 22 187 32 197 7.54e-93 286
Msa0791710 MtrunA17_Chr1g0210821 74.684 158 39 1 25 182 47 203 2.02e-91 287
Msa0791710 MtrunA17_Chr2g0324991 78.788 132 27 1 33 164 3 133 3.05e-77 236
Msa0791710 MtrunA17_Chr6g0479921 45.018 271 138 5 17 285 24 285 5.06e-70 228
Msa0791710 MtrunA17_Chr8g0375521 59.615 156 62 1 22 176 27 182 5.35e-69 224
Msa0791710 MtrunA17_Chr3g0123941 37.107 159 93 3 27 178 113 271 1.52e-24 103
Msa0791710 MtrunA17_Chr1g0200421 35.714 154 88 3 36 178 236 389 6.80e-24 103
Msa0791710 MtrunA17_Chr2g0320341 33.548 155 90 3 31 172 224 378 9.91e-24 102
Msa0791710 MtrunA17_Chr8g0382121 35.526 152 87 5 35 175 109 260 4.60e-20 90.5
Msa0791710 MtrunA17_Chr5g0422571 34.118 170 100 6 19 178 82 249 1.06e-19 89.0
Msa0791710 MtrunA17_Chr7g0258011 32.484 157 87 5 43 182 181 335 1.15e-17 84.0
Msa0791710 MtrunA17_Chr8g0352011 34.783 138 80 4 43 172 171 306 1.27e-17 83.6
Msa0791710 MtrunA17_Chr2g0328921 31.928 166 95 5 15 172 123 278 1.30e-17 83.2
Msa0791710 MtrunA17_Chr4g0026521 34.532 139 83 3 43 174 123 260 1.40e-17 82.8
Msa0791710 MtrunA17_Chr1g0173841 33.571 140 83 4 43 174 220 357 4.34e-17 82.4
Msa0791710 MtrunA17_Chr1g0198651 30.769 143 86 4 43 174 107 247 7.56e-17 80.5
Msa0791710 MtrunA17_Chr4g0053341 31.293 147 93 3 33 172 69 214 1.44e-16 78.6
Msa0791710 MtrunA17_Chr2g0321291 33.813 139 84 3 43 174 138 275 3.39e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791710 AT3G50700.1 47.445 411 200 7 11 415 27 427 1.06e-111 335
Msa0791710 AT3G13810.6 75.152 165 41 0 22 186 51 215 8.98e-98 301
Msa0791710 AT3G13810.5 75.152 165 41 0 22 186 65 229 1.46e-97 301
Msa0791710 AT3G13810.4 75.152 165 41 0 22 186 70 234 1.73e-97 301
Msa0791710 AT3G13810.1 75.152 165 41 0 22 186 70 234 1.73e-97 301
Msa0791710 AT1G03840.1 74.556 169 42 1 15 183 34 201 2.28e-97 300
Msa0791710 AT1G55110.3 76.543 162 38 0 22 183 63 224 9.73e-97 297
Msa0791710 AT1G55110.1 76.543 162 38 0 22 183 63 224 9.73e-97 297
Msa0791710 AT1G55110.2 76.543 162 38 0 22 183 63 224 9.73e-97 297
Msa0791710 AT1G14580.1 70.520 173 50 1 13 185 44 215 1.43e-96 297
Msa0791710 AT1G14580.2 70.520 173 50 1 13 185 44 215 1.43e-96 297
Msa0791710 AT1G14580.3 70.520 173 50 1 13 185 58 229 2.95e-96 297
Msa0791710 AT4G02670.1 77.160 162 37 0 22 183 53 214 8.05e-96 293
Msa0791710 AT4G02670.2 77.160 162 37 0 22 183 55 216 9.84e-96 293
Msa0791710 AT5G03150.1 64.532 203 64 1 21 223 52 246 1.80e-95 296
Msa0791710 AT2G02080.1 69.942 173 50 2 13 185 46 216 6.52e-95 295
Msa0791710 AT2G02080.4 69.942 173 50 2 13 185 46 216 6.52e-95 295
Msa0791710 AT2G02080.5 69.942 173 50 2 13 185 46 216 6.52e-95 295
Msa0791710 AT2G02080.3 69.942 173 50 2 13 185 46 216 6.52e-95 295
Msa0791710 AT1G03840.2 73.373 169 42 2 15 183 34 199 4.37e-94 292
Msa0791710 AT5G44160.1 72.619 168 45 1 18 185 33 199 1.47e-93 290
Msa0791710 AT3G45260.2 73.620 163 43 0 21 183 38 200 3.14e-93 288
Msa0791710 AT3G45260.1 73.620 163 43 0 21 183 38 200 3.14e-93 288
Msa0791710 AT5G60470.3 58.723 235 83 4 2 234 24 246 5.46e-93 288
Msa0791710 AT5G60470.2 58.723 235 83 4 2 234 28 250 5.68e-93 288
Msa0791710 AT3G13810.3 75.325 154 38 0 33 186 68 221 3.51e-91 285
Msa0791710 AT3G13810.2 75.325 154 38 0 33 186 82 235 5.15e-91 285
Msa0791710 AT2G02070.2 72.121 165 45 1 22 186 52 215 1.36e-90 286
Msa0791710 AT2G02070.1 72.121 165 45 1 22 186 52 215 1.36e-90 286
Msa0791710 AT5G60470.1 55.274 237 90 4 6 234 13 241 1.95e-86 271
Msa0791710 AT5G44160.2 61.257 191 68 3 32 221 8 193 1.52e-85 268
Msa0791710 AT2G02080.6 69.286 140 42 1 46 185 1 139 7.75e-78 248
Msa0791710 AT2G02080.2 69.286 140 42 1 46 185 1 139 7.75e-78 248
Msa0791710 AT2G01940.1 53.500 200 90 2 15 213 37 234 1.50e-71 232
Msa0791710 AT1G68130.1 60.248 161 63 1 17 176 36 196 6.56e-71 229
Msa0791710 AT1G25250.3 61.146 157 59 2 22 176 33 189 1.84e-69 224
Msa0791710 AT2G01940.3 52.239 201 92 3 15 213 37 235 2.54e-67 221
Msa0791710 AT1G25250.1 61.074 149 56 2 30 176 18 166 2.73e-66 216
Msa0791710 AT5G66730.1 39.871 464 187 20 22 412 32 476 1.16e-64 215
Msa0791710 AT1G68130.2 60.000 110 43 1 68 176 1 110 2.27e-44 157
Msa0791710 AT2G01940.2 50.340 147 70 2 68 213 1 145 4.54e-44 157
Msa0791710 AT1G25250.2 58.559 111 44 2 68 176 1 111 2.98e-42 151
Msa0791710 AT5G22890.1 33.708 178 103 4 16 180 184 359 6.37e-24 102
Msa0791710 AT1G34370.3 35.256 156 88 3 30 172 13 168 2.87e-23 99.4
Msa0791710 AT1G34370.2 34.568 162 93 3 30 178 223 384 4.46e-23 101
Msa0791710 AT1G34370.1 34.568 162 93 3 30 178 223 384 4.46e-23 101
Msa0791710 AT1G13290.1 32.768 177 101 7 19 178 62 237 5.87e-18 84.3
Msa0791710 AT1G51220.1 33.333 147 87 5 43 180 170 314 1.44e-17 84.0
Msa0791710 AT3G20880.1 34.014 147 86 5 43 180 248 392 1.90e-17 84.3
Msa0791710 AT3G57670.1 33.333 138 82 4 43 172 209 344 9.50e-17 82.0
Msa0791710 AT1G08290.1 33.721 172 92 7 22 174 142 310 1.25e-16 80.9
Msa0791710 AT1G34790.1 33.793 145 88 3 35 172 129 272 1.30e-15 77.4

Find 119 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTGTTCTATATTCTT+TGG 0.186815 5_3:-2763181 Msa0791710:three_prime_UTR
TCTGCTTTGCTCACATCTTT+TGG 0.214858 5_3:-2763355 Msa0791710:CDS
GTGATCATTGTTGTTGTTAT+TGG 0.219266 5_3:+2763705 None:intergenic
ATCATACTCATTGGACAAAA+AGG 0.251606 5_3:-2767784 Msa0791710:five_prime_UTR
GCATCCTTGCTTCGTGCTTT+AGG 0.267894 5_3:-2763586 Msa0791710:CDS
GTTGGTTGCTAGTAAAGTTT+TGG 0.275277 5_3:+2767332 None:intergenic
CTAACACAGGGATCAAGTTT+TGG 0.328062 5_3:+2767671 None:intergenic
TTATATACACCTGGCATTCC+AGG 0.339087 5_3:+2767550 None:intergenic
ATCGAATCAATATCATTTAC+TGG 0.347905 5_3:+2763143 None:intergenic
TAGACAAGAGTTTAGAAAAC+TGG 0.354434 5_3:-2763310 Msa0791710:three_prime_UTR
CCCATGACCCGTGATCTTCT+CGG 0.362988 5_3:-2763415 Msa0791710:CDS
GTGGCAGATTATCTTGGGCT+TGG 0.371694 5_3:-2763478 Msa0791710:CDS
TGATATGATGAGGAGTATAT+TGG 0.381830 5_3:+2767803 None:intergenic
TCTCGGTCTTAGCATGGGAT+TGG 0.395080 5_3:-2763398 Msa0791710:CDS
GAGCCTGTGGCAGATTATCT+TGG 0.397193 5_3:-2763484 Msa0791710:CDS
CTTCCCTGTGGGAATGAGAC+GGG 0.408229 5_3:-2763454 Msa0791710:CDS
GAAAGCACGGTGAGAAGAAA+TGG 0.413209 5_3:-2767095 Msa0791710:CDS
ATCACTGATGATATTGTTGA+TGG 0.423893 5_3:+2766733 None:intergenic
TTCTAAACTCTTGTCTATGC+AGG 0.423930 5_3:+2763316 None:intergenic
CCTCATCATATCATACTCAT+TGG 0.431888 5_3:-2767793 Msa0791710:five_prime_UTR
CTCGGTCTTAGCATGGGATT+GGG 0.446112 5_3:-2763397 Msa0791710:CDS
ATGGCGGTGACAGCCTTGTT+GGG 0.448019 5_3:+2763872 None:intergenic
TTTCGTCGTTCGCTCGCTGC+CGG 0.456453 5_3:+2767220 None:intergenic
AAAGCGATTACTTCAGCGTC+TGG 0.457409 5_3:+2767360 None:intergenic
AGCCTGTGGCAGATTATCTT+GGG 0.461391 5_3:-2763483 Msa0791710:CDS
ACCGAGAAGATCACGGGTCA+TGG 0.464536 5_3:+2763414 None:intergenic
CGAAATCTCCCTGGAATGCC+AGG 0.466668 5_3:-2767559 Msa0791710:intron
GATGGCGGTGACAGCCTTGT+TGG 0.468203 5_3:+2763871 None:intergenic
ACAACATGCCGTGGAAGCTC+CGG 0.473951 5_3:-2767239 Msa0791710:CDS
GGAGTGAGTGGTGGCGTAGC+CGG 0.477319 5_3:+2766754 None:intergenic
TGTGAAAAGTGAGAGGGTTG+TGG 0.480243 5_3:+2763741 None:intergenic
AGCACGAAGCAAGGATGCAT+TGG 0.486996 5_3:+2763591 None:intergenic
GAAGTAGAAGCGTTTGAAGA+TGG 0.494397 5_3:+2763853 None:intergenic
TGATCTTCTCGGTCTTAGCA+TGG 0.494778 5_3:-2763404 Msa0791710:CDS
CTGGAAACAACTAGTTGTAC+TGG 0.499057 5_3:-2763291 Msa0791710:three_prime_UTR
GTGAAAAGTGAGAGGGTTGT+GGG 0.501902 5_3:+2763742 None:intergenic
TTCCCTGTGGGAATGAGACG+GGG 0.506510 5_3:-2763453 Msa0791710:CDS
TGGTGAACGCAGGAAGGCTC+AGG 0.513816 5_3:+2767171 None:intergenic
TACAGATCTCGCATATGAAA+CGG 0.517803 5_3:+2767310 None:intergenic
GATCTTCTCGGTCTTAGCAT+GGG 0.522076 5_3:-2763403 Msa0791710:CDS
GTTATTCCATTGATCTGTTG+TGG 0.526630 5_3:+2763531 None:intergenic
GAAGATCACGGGTCATGGGC+TGG 0.528136 5_3:+2763419 None:intergenic
TTGTTATTGGAGAGATAGAG+TGG 0.529493 5_3:+2763718 None:intergenic
CTGTAACAAAGGATTCCAAC+GGG 0.530824 5_3:-2767292 Msa0791710:CDS
GTTATTGTTATTGCTAACAC+AGG 0.531187 5_3:+2767658 None:intergenic
AGAATATAGAACAAGAGAGT+TGG 0.531503 5_3:+2763185 None:intergenic
ATATGCGAGATCTGTAACAA+AGG 0.533818 5_3:-2767303 Msa0791710:CDS
CAGAAGGTTCTGCGATGGAA+TGG 0.534515 5_3:-2766848 Msa0791710:CDS
TGTGTCCTCGCCGGTGAAGT+TGG 0.538471 5_3:+2767259 None:intergenic
GCTCGCTGCCGGAGCTTCCA+CGG 0.538801 5_3:+2767231 None:intergenic
TATATACACCTGGCATTCCA+GGG 0.541617 5_3:+2767551 None:intergenic
CCGAGAAGATCACGGGTCAT+GGG 0.542667 5_3:+2763415 None:intergenic
AATGCAGTAGCAGATAATAC+AGG 0.542965 5_3:+2763649 None:intergenic
TTGGGCTTGGACTTCCCTGT+GGG 0.543392 5_3:-2763465 Msa0791710:CDS
ACTTCCCTGTGGGAATGAGA+CGG 0.547067 5_3:-2763455 Msa0791710:CDS
TTGTCGTCTACTCAGTGCTC+AGG 0.547564 5_3:-2766697 Msa0791710:intron
GCAGCACCACAACAGATCAA+TGG 0.551093 5_3:-2763537 Msa0791710:CDS
TGAGGAGTATATTGGACAAG+AGG 0.551363 5_3:+2767811 None:intergenic
GTAGCAGATAATACAGGTTG+TGG 0.552729 5_3:+2763655 None:intergenic
GTTGGAGATTCTGTTCCCGT+TGG 0.557245 5_3:+2767277 None:intergenic
AGGTCACCGAGTGCTCTTGA+AGG 0.557256 5_3:+2767144 None:intergenic
GTGAATGAGAGTTGGAAGGA+GGG 0.557913 5_3:-2766826 Msa0791710:CDS
TAGTTGTACTGGCCCACCCC+AGG 0.558567 5_3:-2763280 Msa0791710:three_prime_UTR
CTTGGGCTTGGACTTCCCTG+TGG 0.559790 5_3:-2763466 Msa0791710:CDS
CACAATCCTTCAAGAGCACT+CGG 0.561083 5_3:-2767150 Msa0791710:CDS
AGAGTGGTGTGAAAAGTGAG+AGG 0.562539 5_3:+2763734 None:intergenic
AACAGAATCTCCAACTTCAC+CGG 0.564489 5_3:-2767269 Msa0791710:CDS
ACGGCATGTTGTGTCCTCGC+CGG 0.565267 5_3:+2767250 None:intergenic
TCCCTGTGGGAATGAGACGG+GGG 0.566052 5_3:-2763452 Msa0791710:CDS
AGAGAGTATAAATGTGATTG+TGG 0.571517 5_3:-2767000 Msa0791710:CDS
ATGGAATGGTGAATGAGAGT+TGG 0.571967 5_3:-2766834 Msa0791710:CDS
ATCAACAATATCATCAGTGA+TGG 0.575729 5_3:-2766731 Msa0791710:CDS
AGAGCACTCGGTGACCTCAC+AGG 0.584571 5_3:-2767138 Msa0791710:CDS
AATGAGAGTTGGAAGGAGGG+TGG 0.585791 5_3:-2766823 Msa0791710:CDS
AGCCCAAGATAATCTGCCAC+AGG 0.587033 5_3:+2763481 None:intergenic
CTGTGTACACAACGAGGCGG+CGG 0.589206 5_3:+2767711 None:intergenic
GCCGGTGAAGAAGAAGAAGA+AGG 0.591860 5_3:+2766772 None:intergenic
GCTAAGACCGAGAAGATCAC+GGG 0.592165 5_3:+2763408 None:intergenic
TCTGTGATAGAGAAAGATGT+GGG 0.592327 5_3:+2763766 None:intergenic
GGACAAATACTTACAAGAGA+AGG 0.593043 5_3:+2767732 None:intergenic
GGCGAGGACACAACATGCCG+TGG 0.596259 5_3:-2767248 Msa0791710:CDS
CAAGCCTAAAGCACGAAGCA+AGG 0.596303 5_3:+2763582 None:intergenic
TGCTAAGACCGAGAAGATCA+CGG 0.597202 5_3:+2763407 None:intergenic
TGAAGGATTGTGGTGAACGC+AGG 0.600303 5_3:+2767161 None:intergenic
GGTGAATGAGAGTTGGAAGG+AGG 0.600831 5_3:-2766827 Msa0791710:CDS
ATACTTACAAGAGAAGGAAG+AGG 0.601619 5_3:+2767738 None:intergenic
AAAGTTCATATGAAGAACTG+TGG 0.604717 5_3:-2767027 Msa0791710:CDS
GGTGGCGGTGTAGTAGAAAG+TGG 0.610378 5_3:+2767595 None:intergenic
GATATTGTTGATGGAGTGAG+TGG 0.614576 5_3:+2766742 None:intergenic
GACAAACGTACACTTTCTTG+CGG 0.615008 5_3:+2767193 None:intergenic
TAGCAATAACGCTGTTGCCG+TGG 0.616354 5_3:-2766797 Msa0791710:CDS
ATTGTTGATGGAGTGAGTGG+TGG 0.622386 5_3:+2766745 None:intergenic
GTAGTAGAAAGTGGCATTGG+TGG 0.622904 5_3:+2767604 None:intergenic
CCCTGTGGGAATGAGACGGG+GGG 0.624937 5_3:-2763451 Msa0791710:CDS
AAACGTACACTTTCTTGCGG+AGG 0.628231 5_3:+2767196 None:intergenic
TCTGTAACAAAGGATTCCAA+CGG 0.628991 5_3:-2767293 Msa0791710:CDS
GGATTGTGGTGAACGCAGGA+AGG 0.629061 5_3:+2767165 None:intergenic
TACTTACAAGAGAAGGAAGA+GGG 0.632009 5_3:+2767739 None:intergenic
CACTGAGTAGACGACAAAGT+AGG 0.633598 5_3:+2766703 None:intergenic
TTATTGTTATTGCTAACACA+GGG 0.635591 5_3:+2767659 None:intergenic
GATCTCGCATATGAAACGGT+TGG 0.639364 5_3:+2767314 None:intergenic
ACGCACAGAAGGTTCTGCGA+TGG 0.641919 5_3:-2766853 Msa0791710:CDS
GGTGTAGTAGAAAGTGGCAT+TGG 0.645281 5_3:+2767601 None:intergenic
TAGCATGGGATTGGGTAGAG+AGG 0.647406 5_3:-2763389 Msa0791710:CDS
AGAAGAAGAAGAAGGAACCA+CGG 0.661668 5_3:+2766780 None:intergenic
GAGTGGTGTGAAAAGTGAGA+GGG 0.666933 5_3:+2763735 None:intergenic
ACATTGCAGAAAACCCAACA+AGG 0.670424 5_3:-2763885 Msa0791710:CDS
GTAGAAGCGTTTGAAGATGG+CGG 0.678836 5_3:+2763856 None:intergenic
AATGGTGAATGAGAGTTGGA+AGG 0.679457 5_3:-2766830 Msa0791710:CDS
CGAGTGCTCTTGAAGGATTG+TGG 0.681807 5_3:+2767151 None:intergenic
ACAGATCAATGGAATAACCA+TGG 0.682178 5_3:-2763526 Msa0791710:CDS
TTCTGTGATAGAGAAAGATG+TGG 0.682251 5_3:+2763765 None:intergenic
CTGTGATAGAGAAAGATGTG+GGG 0.685180 5_3:+2763767 None:intergenic
AATCTCCAACTTCACCGGCG+AGG 0.689245 5_3:-2767264 Msa0791710:CDS
AAAACAAGAGAATGAGCCTG+TGG 0.695424 5_3:-2763497 Msa0791710:CDS
GATGTGGGGATATCTGAGTG+AGG 0.723861 5_3:+2763781 None:intergenic
CCAATGAGTATGATATGATG+AGG 0.727178 5_3:+2767793 None:intergenic
GTACTGTGTACACAACGAGG+CGG 0.772511 5_3:+2767708 None:intergenic
GGTGTACTGTGTACACAACG+AGG 0.805771 5_3:+2767705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTATTTATATAATAG+TGG + chr5_3:2763430-2763449 None:intergenic 10.0%
!!! TTATTTGTTTATTTGTTAAT+AGG - chr5_3:2764055-2764074 Msa0791710:intron 10.0%
!!! ATTAAATTTATTGTTTTTTG+TGG + chr5_3:2764410-2764429 None:intergenic 10.0%
!!! AAAAAAATTGTTATTTTGAT+AGG - chr5_3:2764502-2764521 Msa0791710:intron 10.0%
!!! AAAATATGATTTTATTTTGT+AGG - chr5_3:2764748-2764767 Msa0791710:intron 10.0%
!! ATAATAAATTCCTTATTATT+TGG - chr5_3:2764842-2764861 Msa0791710:intron 10.0%
!! AGATAAAATAATATGACAAA+TGG + chr5_3:2764548-2764567 None:intergenic 15.0%
!!! TTTGTCATATTATTTTATCT+AGG - chr5_3:2764548-2764567 Msa0791710:intron 15.0%
!! CAGATAAAATAAATAGTATT+TGG - chr5_3:2765109-2765128 Msa0791710:intron 15.0%
!! ATAAAATAAATAGTATTTGG+TGG - chr5_3:2765112-2765131 Msa0791710:intron 15.0%
!!! CTTAAAGAAATTTTTTACTA+TGG + chr5_3:2765253-2765272 None:intergenic 15.0%
!!! ATAATTTTGAGACAAATTTT+TGG + chr5_3:2765401-2765420 None:intergenic 15.0%
!!! CAAATATCATTTTTATTTAC+AGG - chr5_3:2765425-2765444 Msa0791710:intron 15.0%
!!! ATGTTTATTTTGTAAAAAGT+TGG + chr5_3:2765822-2765841 None:intergenic 15.0%
!!! ACTTTTTACAAAATAAACAT+AGG - chr5_3:2765822-2765841 Msa0791710:intron 15.0%
!! TGTAAAACTTATATCAAAAT+AGG - chr5_3:2765880-2765899 Msa0791710:intron 15.0%
!! CATACTTTAATGTTATTATA+AGG - chr5_3:2766543-2766562 Msa0791710:intron 15.0%
!!! TTTTTTAAATTTTCTCAATC+AGG - chr5_3:2766935-2766954 Msa0791710:intron 15.0%
!! GATATTTATTTATATACACC+TGG + chr5_3:2763408-2763427 None:intergenic 20.0%
!!! TTTTGAGAGATAATTAAAGA+TGG + chr5_3:2764000-2764019 None:intergenic 20.0%
!!! TTGTTTATTTGTTAATAGGA+AGG - chr5_3:2764059-2764078 Msa0791710:intron 20.0%
!! TAGTAATTCATTTCCTATTT+GGG - chr5_3:2764282-2764301 Msa0791710:intron 20.0%
!!! TTGTTTTTTGTGGAAAATTA+AGG + chr5_3:2764400-2764419 None:intergenic 20.0%
!!! TCATTTGTTCTTTTTAATTG+TGG - chr5_3:2764447-2764466 Msa0791710:intron 20.0%
!!! TCTTTTTAATTGTGGTATTA+AGG - chr5_3:2764455-2764474 Msa0791710:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr5_3:2764779-2764798 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr5_3:2764778-2764797 None:intergenic 20.0%
!! TGCTGATGAAAAAATTTATA+AGG + chr5_3:2764653-2764672 None:intergenic 20.0%
!!! AAAATTTCCATCAAGATTTT+TGG - chr5_3:2764688-2764707 Msa0791710:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr5_3:2764778-2764797 Msa0791710:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr5_3:2764779-2764798 Msa0791710:intron 20.0%
!! AGAGAGATAAATAGATAAAA+GGG + chr5_3:2764822-2764841 None:intergenic 20.0%
!! TAGAGAGATAAATAGATAAA+AGG + chr5_3:2764823-2764842 None:intergenic 20.0%
!! CTTCATTTATCCAAATAATA+AGG + chr5_3:2764855-2764874 None:intergenic 20.0%
!!! ATTTTTTTTCATCTTCCTTT+AGG - chr5_3:2765355-2765374 Msa0791710:intron 20.0%
!! AAATGAGAATAATATGATGA+GGG + chr5_3:2765491-2765510 None:intergenic 20.0%
!! TAAATGAGAATAATATGATG+AGG + chr5_3:2765492-2765511 None:intergenic 20.0%
!! AAAGAATTGTGTGTAATTTA+GGG - chr5_3:2765594-2765613 Msa0791710:intron 20.0%
!! ATAAGCATGAAACAAATTAT+TGG - chr5_3:2765920-2765939 Msa0791710:intron 20.0%
!! TAAGCATGAAACAAATTATT+GGG - chr5_3:2765921-2765940 Msa0791710:intron 20.0%
!! AGTAATATTCATTATTCTTG+CGG - chr5_3:2766085-2766104 Msa0791710:intron 20.0%
!!! GGTTAATGCTTATTAATTTT+TGG - chr5_3:2766385-2766404 Msa0791710:intron 20.0%
!!! AAAACTTTTCTAGATTATCA+TGG + chr5_3:2766431-2766450 None:intergenic 20.0%
!! AATCTTGAAAAAACAACTAA+TGG + chr5_3:2767018-2767037 None:intergenic 20.0%
!! TTATTGTTATTGCTAACACA+GGG + chr5_3:2763290-2763309 None:intergenic 25.0%
! CTAGTAATTCATTTCCTATT+TGG - chr5_3:2764281-2764300 Msa0791710:intron 25.0%
!!! TCATTTTTATTTACAGGTTG+AGG - chr5_3:2765431-2765450 Msa0791710:intron 25.0%
!!! CATTTTTATTTACAGGTTGA+GGG - chr5_3:2765432-2765451 Msa0791710:intron 25.0%
!!! ATTTCATTTTTGTGTTGTCT+CGG + chr5_3:2765463-2765482 None:intergenic 25.0%
! GAAAGAATTGTGTGTAATTT+AGG - chr5_3:2765593-2765612 Msa0791710:intron 25.0%
! AAGAATTGTGTGTAATTTAG+GGG - chr5_3:2765595-2765614 Msa0791710:intron 25.0%
! AACAAATTATTGGGAAGTAA+AGG - chr5_3:2765930-2765949 Msa0791710:intron 25.0%
! ATATTCTTGAGCTATGTAAT+TGG - chr5_3:2766047-2766066 Msa0791710:intron 25.0%
! TATTCTTGAGCTATGTAATT+GGG - chr5_3:2766048-2766067 Msa0791710:intron 25.0%
! TCAAAGATCTTTATCAATCA+TGG - chr5_3:2766455-2766474 Msa0791710:intron 25.0%
! ACTAGTTAAGGAAACAAAAA+AGG + chr5_3:2766691-2766710 None:intergenic 25.0%
!!! CAATTGTCACTTTATAACAA+GGG + chr5_3:2766737-2766756 None:intergenic 25.0%
!!! TCAATTGTCACTTTATAACA+AGG + chr5_3:2766738-2766757 None:intergenic 25.0%
! AGCAAAACAAAAAAATTCCT+GGG + chr5_3:2767686-2767705 None:intergenic 25.0%
! AAGCAAAACAAAAAAATTCC+TGG + chr5_3:2767687-2767706 None:intergenic 25.0%
! ATCGAATCAATATCATTTAC+TGG + chr5_3:2767806-2767825 None:intergenic 25.0%
! TGATATGATGAGGAGTATAT+TGG + chr5_3:2763146-2763165 None:intergenic 30.0%
ATCATACTCATTGGACAAAA+AGG - chr5_3:2763162-2763181 Msa0791710:three_prime_UTR 30.0%
! GTTATTGTTATTGCTAACAC+AGG + chr5_3:2763291-2763310 None:intergenic 30.0%
!!! AGATTTCGCTTCTTTTTTGA+CGG + chr5_3:2763375-2763394 None:intergenic 30.0%
! TTGGTTGCTAGTAAAGTTTT+GGG + chr5_3:2763616-2763635 None:intergenic 30.0%
AAAGTTCATATGAAGAACTG+TGG - chr5_3:2763919-2763938 Msa0791710:intron 30.0%
! AGAGAGTATAAATGTGATTG+TGG - chr5_3:2763946-2763965 Msa0791710:intron 30.0%
! ATAATTTTGTTACGCACAGA+AGG - chr5_3:2764082-2764101 Msa0791710:intron 30.0%
ATCACTGATGATATTGTTGA+TGG + chr5_3:2764216-2764235 None:intergenic 30.0%
ATCAACAATATCATCAGTGA+TGG - chr5_3:2764215-2764234 Msa0791710:intron 30.0%
! AATGTTTTCCAAAACAAAGG+CGG + chr5_3:2764339-2764358 None:intergenic 30.0%
! ACGAATGTTTTCCAAAACAA+AGG + chr5_3:2764342-2764361 None:intergenic 30.0%
TTGCAATTGCAAATTGATAG+TGG + chr5_3:2764365-2764384 None:intergenic 30.0%
ACTATCAATTTGCAATTGCA+AGG - chr5_3:2764364-2764383 Msa0791710:intron 30.0%
CTATCAATTTGCAATTGCAA+GGG - chr5_3:2764365-2764384 Msa0791710:intron 30.0%
! TGCTGACGGAAAATTTTATA+GGG + chr5_3:2764622-2764641 None:intergenic 30.0%
! ATGCTGACGGAAAATTTTAT+AGG + chr5_3:2764623-2764642 None:intergenic 30.0%
ATAAGGACTAAAAATGCTGA+CGG + chr5_3:2764636-2764655 None:intergenic 30.0%
! TTGATGGAAATTTTTGACAG+GGG + chr5_3:2764682-2764701 None:intergenic 30.0%
! CTTGATGGAAATTTTTGACA+GGG + chr5_3:2764683-2764702 None:intergenic 30.0%
! TCTTGATGGAAATTTTTGAC+AGG + chr5_3:2764684-2764703 None:intergenic 30.0%
TTAAGGACCAAAAATCTTGA+TGG + chr5_3:2764698-2764717 None:intergenic 30.0%
! CATTTTCCTTAAGCACTTTA+AGG + chr5_3:2764715-2764734 None:intergenic 30.0%
TGCTTAAGGAAAATGTCAAA+GGG - chr5_3:2764720-2764739 Msa0791710:intron 30.0%
TGACCATATAAGAATGTGTT+CGG + chr5_3:2765089-2765108 None:intergenic 30.0%
TCTCGCATATTATAACCTAA+AGG + chr5_3:2765373-2765392 None:intergenic 30.0%
AAAGGAAACAAATTCATCAC+TGG - chr5_3:2765948-2765967 Msa0791710:intron 30.0%
TGGAAATGAATTGAAAGAGA+TGG - chr5_3:2765968-2765987 Msa0791710:intron 30.0%
ATGAATTGAAAGAGATGGAA+AGG - chr5_3:2765973-2765992 Msa0791710:intron 30.0%
TATTCATTATTCTTGCGGTT+TGG - chr5_3:2766090-2766109 Msa0791710:intron 30.0%
TTGCTGAGTAAATTACACTA+GGG + chr5_3:2766283-2766302 None:intergenic 30.0%
CACTTGTAAATTTACTTGTG+TGG - chr5_3:2766364-2766383 Msa0791710:intron 30.0%
AGGGAACCAAATATAGTATA+AGG - chr5_3:2766600-2766619 Msa0791710:intron 30.0%
CAAGGTCCTTATACTATATT+TGG + chr5_3:2766609-2766628 None:intergenic 30.0%
ACAATTGATCCTAAATGAAC+AGG - chr5_3:2766750-2766769 Msa0791710:CDS 30.0%
CAATTGATCCTAAATGAACA+GGG - chr5_3:2766751-2766770 Msa0791710:CDS 30.0%
AGTCAAAAGGGGAAAATAAT+AGG - chr5_3:2766785-2766804 Msa0791710:CDS 30.0%
AAAGGGGAAAATAATAGGAA+AGG - chr5_3:2766790-2766809 Msa0791710:CDS 30.0%
ATTGAATGCATAGAGCAAAA+CGG + chr5_3:2766836-2766855 None:intergenic 30.0%
! GTGATCATTGTTGTTGTTAT+TGG + chr5_3:2767244-2767263 None:intergenic 30.0%
TAGACAAGAGTTTAGAAAAC+TGG - chr5_3:2767636-2767655 Msa0791710:exon 30.0%
GCAAAACAAAAAAATTCCTG+GGG + chr5_3:2767685-2767704 None:intergenic 30.0%
!!! TTTTGTTTTGCTTTTGTGAC+TGG - chr5_3:2767694-2767713 Msa0791710:five_prime_UTR 30.0%
CCAAAAATAAGAAAGACAGT+TGG + chr5_3:2767731-2767750 None:intergenic 30.0%
!!! CCAACTGTCTTTCTTATTTT+TGG - chr5_3:2767728-2767747 Msa0791710:five_prime_UTR 30.0%
!!! ACTGTCTTTCTTATTTTTGG+AGG - chr5_3:2767731-2767750 Msa0791710:five_prime_UTR 30.0%
!!! CTGTCTTTCTTATTTTTGGA+GGG - chr5_3:2767732-2767751 Msa0791710:five_prime_UTR 30.0%
AGAATATAGAACAAGAGAGT+TGG + chr5_3:2767764-2767783 None:intergenic 30.0%
CTCTCTTGTTCTATATTCTT+TGG - chr5_3:2767765-2767784 Msa0791710:five_prime_UTR 30.0%
CCAATGAGTATGATATGATG+AGG + chr5_3:2763156-2763175 None:intergenic 35.0%
CCTCATCATATCATACTCAT+TGG - chr5_3:2763153-2763172 Msa0791710:three_prime_UTR 35.0%
TACTTACAAGAGAAGGAAGA+GGG + chr5_3:2763210-2763229 None:intergenic 35.0%
ATACTTACAAGAGAAGGAAG+AGG + chr5_3:2763211-2763230 None:intergenic 35.0%
GGACAAATACTTACAAGAGA+AGG + chr5_3:2763217-2763236 None:intergenic 35.0%
!!! GAAGTATTTTTCTGAGGTTC+TGG + chr5_3:2763321-2763340 None:intergenic 35.0%
! GTTGGTTGCTAGTAAAGTTT+TGG + chr5_3:2763617-2763636 None:intergenic 35.0%
TACAGATCTCGCATATGAAA+CGG + chr5_3:2763639-2763658 None:intergenic 35.0%
ATATGCGAGATCTGTAACAA+AGG - chr5_3:2763643-2763662 Msa0791710:CDS 35.0%
TCTGTAACAAAGGATTCCAA+CGG - chr5_3:2763653-2763672 Msa0791710:CDS 35.0%
! AAGCACTTTTGTAGAAAGCA+CGG - chr5_3:2763838-2763857 Msa0791710:CDS 35.0%
! CAAAAGTGCAAAACCCAAAT+AGG + chr5_3:2764298-2764317 None:intergenic 35.0%
! ATGTTTTCCAAAACAAAGGC+GGG + chr5_3:2764338-2764357 None:intergenic 35.0%
! TTTGGTCCTTAAAGTGCTTA+AGG - chr5_3:2764706-2764725 Msa0791710:intron 35.0%
GTGCTTAAGGAAAATGTCAA+AGG - chr5_3:2764719-2764738 Msa0791710:intron 35.0%
AAGCCGAACACATTCTTATA+TGG - chr5_3:2765083-2765102 Msa0791710:intron 35.0%
! AGATAAAAAAGCATGCGGTT+TGG - chr5_3:2765671-2765690 Msa0791710:intron 35.0%
! TTTTTCCATTGTTGCACATC+AGG + chr5_3:2766012-2766031 None:intergenic 35.0%
!! ATTATTCTTGCGGTTTGGTT+TGG - chr5_3:2766095-2766114 Msa0791710:intron 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG - chr5_3:2766237-2766256 Msa0791710:intron 35.0%
!! TGGTTTGCGGTTTTTCTATT+GGG - chr5_3:2766238-2766257 Msa0791710:intron 35.0%
!!! GTTTTTCTATTGGGTTGGTT+CGG - chr5_3:2766247-2766266 Msa0791710:intron 35.0%
TGCTGAGTAAATTACACTAG+GGG + chr5_3:2766282-2766301 None:intergenic 35.0%
GTTGCTGAGTAAATTACACT+AGG + chr5_3:2766284-2766303 None:intergenic 35.0%
GATTATCATGGAAGAATTGC+AGG + chr5_3:2766419-2766438 None:intergenic 35.0%
CTTTGACTACACAAGTTTCA+AGG + chr5_3:2766627-2766646 None:intergenic 35.0%
TTGAATGCATAGAGCAAAAC+GGG + chr5_3:2766835-2766854 None:intergenic 35.0%
TCTGTGATAGAGAAAGATGT+GGG + chr5_3:2767183-2767202 None:intergenic 35.0%
TTCTGTGATAGAGAAAGATG+TGG + chr5_3:2767184-2767203 None:intergenic 35.0%
! TTGTTATTGGAGAGATAGAG+TGG + chr5_3:2767231-2767250 None:intergenic 35.0%
!! CAGTTTTGTAATGGGGAAAA+GGG + chr5_3:2767266-2767285 None:intergenic 35.0%
!! TGGAGATGCAGTTTTGTAAT+GGG + chr5_3:2767274-2767293 None:intergenic 35.0%
AATGCAGTAGCAGATAATAC+AGG + chr5_3:2767300-2767319 None:intergenic 35.0%
GTTATTCCATTGATCTGTTG+TGG + chr5_3:2767418-2767437 None:intergenic 35.0%
ACAGATCAATGGAATAACCA+TGG - chr5_3:2767420-2767439 Msa0791710:intron 35.0%
!!! TCTCTTGTTTTACATGACCA+TGG + chr5_3:2767440-2767459 None:intergenic 35.0%
TTCTAAACTCTTGTCTATGC+AGG + chr5_3:2767633-2767652 None:intergenic 35.0%
AACAAAAAAATTCCTGGGGT+GGG + chr5_3:2767681-2767700 None:intergenic 35.0%
AAACAAAAAAATTCCTGGGG+TGG + chr5_3:2767682-2767701 None:intergenic 35.0%
! TGAGGAGTATATTGGACAAG+AGG + chr5_3:2763138-2763157 None:intergenic 40.0%
!! CAAGTTTTGGTGTAGTAGTG+TGG + chr5_3:2763265-2763284 None:intergenic 40.0%
! CTAACACAGGGATCAAGTTT+TGG + chr5_3:2763278-2763297 None:intergenic 40.0%
!! GGTGGTGAAGTATTTTTCTG+AGG + chr5_3:2763327-2763346 None:intergenic 40.0%
!!! TTTCGCTTCTTTTTTGACGG+TGG + chr5_3:2763372-2763391 None:intergenic 40.0%
AAAAAGAAGCGAAATCTCCC+TGG - chr5_3:2763378-2763397 Msa0791710:CDS 40.0%
TATATACACCTGGCATTCCA+GGG + chr5_3:2763398-2763417 None:intergenic 40.0%
TTATATACACCTGGCATTCC+AGG + chr5_3:2763399-2763418 None:intergenic 40.0%
CTGTAACAAAGGATTCCAAC+GGG - chr5_3:2763654-2763673 Msa0791710:CDS 40.0%
AACAGAATCTCCAACTTCAC+CGG - chr5_3:2763677-2763696 Msa0791710:CDS 40.0%
GACAAACGTACACTTTCTTG+CGG + chr5_3:2763756-2763775 None:intergenic 40.0%
! ATTGTGGCACTGTGTTTTCT+AGG - chr5_3:2763962-2763981 Msa0791710:intron 40.0%
ATGGAATGGTGAATGAGAGT+TGG - chr5_3:2764112-2764131 Msa0791710:intron 40.0%
AATGGTGAATGAGAGTTGGA+AGG - chr5_3:2764116-2764135 Msa0791710:intron 40.0%
AGAAGAAGAAGAAGGAACCA+CGG + chr5_3:2764169-2764188 None:intergenic 40.0%
TCCTTCTTCTTCTTCTTCAC+CGG - chr5_3:2764173-2764192 Msa0791710:intron 40.0%
! GATATTGTTGATGGAGTGAG+TGG + chr5_3:2764207-2764226 None:intergenic 40.0%
!! GGTTTTGCACTTTTGTTTCC+TGG - chr5_3:2764303-2764322 Msa0791710:intron 40.0%
TAGTAATGCAGCCCACATTA+TGG - chr5_3:2764958-2764977 Msa0791710:intron 40.0%
TGTGAGAGGATCCATAATGT+GGG + chr5_3:2764972-2764991 None:intergenic 40.0%
!!! TGCTTTTTTATCTCGCGGTT+TGG + chr5_3:2765664-2765683 None:intergenic 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG - chr5_3:2765676-2765695 Msa0791710:intron 40.0%
CAAACCAAACCAAACCAATG+CGG - chr5_3:2765729-2765748 Msa0791710:intron 40.0%
!!! GGTTTTTTGCGGTTTTGGTT+TGG - chr5_3:2766208-2766227 Msa0791710:intron 40.0%
!!! TTTGCGGTTTTGGTTTGGAT+TGG - chr5_3:2766213-2766232 Msa0791710:intron 40.0%
!!! GGTTTTGGTTTGGATTGGTT+TGG - chr5_3:2766218-2766237 Msa0791710:intron 40.0%
!! GTTTGGATTGGTTTGGTTTG+CGG - chr5_3:2766225-2766244 Msa0791710:intron 40.0%
! TTGCGGTTTTTCTATTGGGT+TGG - chr5_3:2766242-2766261 Msa0791710:intron 40.0%
AAAATGTTAACGAGTGCCTC+CGG - chr5_3:2766566-2766585 Msa0791710:intron 40.0%
TTGTTTCCTTAACTAGTGCC+CGG - chr5_3:2766694-2766713 Msa0791710:intron 40.0%
TGATCCTAAATGAACAGGGA+AGG - chr5_3:2766755-2766774 Msa0791710:CDS 40.0%
GAAGGCAGTGTAAGTCAAAA+GGG - chr5_3:2766773-2766792 Msa0791710:CDS 40.0%
AAGGCAGTGTAAGTCAAAAG+GGG - chr5_3:2766774-2766793 Msa0791710:CDS 40.0%
TGAAACAGTGAAACACAAGG+GGG + chr5_3:2766887-2766906 None:intergenic 40.0%
CTGAAACAGTGAAACACAAG+GGG + chr5_3:2766888-2766907 None:intergenic 40.0%
CCTGAAACAGTGAAACACAA+GGG + chr5_3:2766889-2766908 None:intergenic 40.0%
ACCTGAAACAGTGAAACACA+AGG + chr5_3:2766890-2766909 None:intergenic 40.0%
ACATTGCAGAAAACCCAACA+AGG - chr5_3:2767061-2767080 Msa0791710:CDS 40.0%
!! GAAGTAGAAGCGTTTGAAGA+TGG + chr5_3:2767096-2767115 None:intergenic 40.0%
CTGTGATAGAGAAAGATGTG+GGG + chr5_3:2767182-2767201 None:intergenic 40.0%
!! GCAGTTTTGTAATGGGGAAA+AGG + chr5_3:2767267-2767286 None:intergenic 40.0%
!! GGAGATGCAGTTTTGTAATG+GGG + chr5_3:2767273-2767292 None:intergenic 40.0%
!! GTGGAGATGCAGTTTTGTAA+TGG + chr5_3:2767275-2767294 None:intergenic 40.0%
GTAGCAGATAATACAGGTTG+TGG + chr5_3:2767294-2767313 None:intergenic 40.0%
AAAACAAGAGAATGAGCCTG+TGG - chr5_3:2767449-2767468 Msa0791710:intron 40.0%
! TCTGCTTTGCTCACATCTTT+TGG - chr5_3:2767591-2767610 Msa0791710:CDS 40.0%
! CTTTGCTCACATCTTTTGGA+GGG - chr5_3:2767595-2767614 Msa0791710:CDS 40.0%
CTGGAAACAACTAGTTGTAC+TGG - chr5_3:2767655-2767674 Msa0791710:five_prime_UTR 40.0%
! GTAGTAGAAAGTGGCATTGG+TGG + chr5_3:2763345-2763364 None:intergenic 45.0%
GGTGTAGTAGAAAGTGGCAT+TGG + chr5_3:2763348-2763367 None:intergenic 45.0%
AAAGCGATTACTTCAGCGTC+TGG + chr5_3:2763589-2763608 None:intergenic 45.0%
GATCTCGCATATGAAACGGT+TGG + chr5_3:2763635-2763654 None:intergenic 45.0%
AAACGTACACTTTCTTGCGG+AGG + chr5_3:2763753-2763772 None:intergenic 45.0%
!! CACAATCCTTCAAGAGCACT+CGG - chr5_3:2763796-2763815 Msa0791710:CDS 45.0%
!!! AGTGCTTTTTCACTCCTGTG+AGG + chr5_3:2763825-2763844 None:intergenic 45.0%
! GAAAGCACGGTGAGAAGAAA+TGG - chr5_3:2763851-2763870 Msa0791710:CDS 45.0%
GTGAATGAGAGTTGGAAGGA+GGG - chr5_3:2764120-2764139 Msa0791710:intron 45.0%
! ATTGTTGATGGAGTGAGTGG+TGG + chr5_3:2764204-2764223 None:intergenic 45.0%
CACTGAGTAGACGACAAAGT+AGG + chr5_3:2764246-2764265 None:intergenic 45.0%
!! TCTCAAACCCGCCTTTGTTT+TGG - chr5_3:2764328-2764347 Msa0791710:intron 45.0%
GTGTGAGAGGATCCATAATG+TGG + chr5_3:2764973-2764992 None:intergenic 45.0%
ATCCTCTCACACGATGACAA+TGG - chr5_3:2764981-2765000 Msa0791710:intron 45.0%
TCCTCTCACACGATGACAAT+GGG - chr5_3:2764982-2765001 Msa0791710:intron 45.0%
!! GTGTAATTTAGGGGTGTTCG+CGG - chr5_3:2765604-2765623 Msa0791710:intron 45.0%
!!! CCGCATGCTTTTTTATCTCG+CGG + chr5_3:2765669-2765688 None:intergenic 45.0%
! CCGCGAGATAAAAAAGCATG+CGG - chr5_3:2765666-2765685 Msa0791710:intron 45.0%
!! CGCATTGGTTTGGTTTGGTT+TGG + chr5_3:2765731-2765750 None:intergenic 45.0%
!! CAAACCGCATTGGTTTGGTT+TGG + chr5_3:2765736-2765755 None:intergenic 45.0%
CAAACCAAACCAATGCGGTT+TGG - chr5_3:2765734-2765753 Msa0791710:intron 45.0%
!! CAATCCAAACCGCATTGGTT+TGG + chr5_3:2765741-2765760 None:intergenic 45.0%
! CAAACCAATGCGGTTTGGAT+TGG - chr5_3:2765739-2765758 Msa0791710:intron 45.0%
!! CAATGCGGTTTGGATTGGTT+CGG - chr5_3:2765744-2765763 Msa0791710:intron 45.0%
!! TTGGATTGGTTCGGTTTGTG+CGG - chr5_3:2765753-2765772 Msa0791710:intron 45.0%
TCGAACCTGATGTGCAACAA+TGG - chr5_3:2766004-2766023 Msa0791710:intron 45.0%
!! TCTTGCGGTTTGGTTTGGTT+TGG - chr5_3:2766100-2766119 Msa0791710:intron 45.0%
!! CGGTTTGGTTTGGTTTGGTT+TGG - chr5_3:2766105-2766124 Msa0791710:intron 45.0%
!! GCACTTGGTTCGGATGAATT+CGG + chr5_3:2766188-2766207 None:intergenic 45.0%
GAATTCATCCGAACCAAGTG+CGG - chr5_3:2766187-2766206 Msa0791710:intron 45.0%
GCAAAAAACCGCACTTGGTT+CGG + chr5_3:2766198-2766217 None:intergenic 45.0%
!!! GAACCAAGTGCGGTTTTTTG+CGG - chr5_3:2766197-2766216 Msa0791710:intron 45.0%
AAACCGCAAAAAACCGCACT+TGG + chr5_3:2766203-2766222 None:intergenic 45.0%
!!! AGTGCGGTTTTTTGCGGTTT+TGG - chr5_3:2766203-2766222 Msa0791710:intron 45.0%
AAATGTTAACGAGTGCCTCC+GGG - chr5_3:2766567-2766586 Msa0791710:intron 45.0%
TGTTTCCTTAACTAGTGCCC+GGG - chr5_3:2766695-2766714 Msa0791710:intron 45.0%
! GTCTTGTTAACTAATGCCCC+GGG + chr5_3:2766715-2766734 None:intergenic 45.0%
!! GGTCTTGTTAACTAATGCCC+CGG + chr5_3:2766716-2766735 None:intergenic 45.0%
ACTGCCTTCCCTGTTCATTT+AGG + chr5_3:2766762-2766781 None:intergenic 45.0%
GGAAGGCAGTGTAAGTCAAA+AGG - chr5_3:2766772-2766791 Msa0791710:CDS 45.0%
CCCTTGTGTTTCACTGTTTC+AGG - chr5_3:2766886-2766905 Msa0791710:intron 45.0%
!! GTAGAAGCGTTTGAAGATGG+CGG + chr5_3:2767093-2767112 None:intergenic 45.0%
GTGAAAAGTGAGAGGGTTGT+GGG + chr5_3:2767207-2767226 None:intergenic 45.0%
TGTGAAAAGTGAGAGGGTTG+TGG + chr5_3:2767208-2767227 None:intergenic 45.0%
GAGTGGTGTGAAAAGTGAGA+GGG + chr5_3:2767214-2767233 None:intergenic 45.0%
AGAGTGGTGTGAAAAGTGAG+AGG + chr5_3:2767215-2767234 None:intergenic 45.0%
ACTCCAAAAAGCTGCTCAAG+TGG - chr5_3:2767320-2767339 Msa0791710:CDS 45.0%
CTCCAAAAAGCTGCTCAAGT+GGG - chr5_3:2767321-2767340 Msa0791710:CDS 45.0%
! AACCCACTTGAGCAGCTTTT+TGG + chr5_3:2767326-2767345 None:intergenic 45.0%
AGCCTGTGGCAGATTATCTT+GGG - chr5_3:2767463-2767482 Msa0791710:intron 45.0%
TGCTAAGACCGAGAAGATCA+CGG + chr5_3:2767542-2767561 None:intergenic 45.0%
TGATCTTCTCGGTCTTAGCA+TGG - chr5_3:2767542-2767561 Msa0791710:intron 45.0%
GATCTTCTCGGTCTTAGCAT+GGG - chr5_3:2767543-2767562 Msa0791710:intron 45.0%
! GCTTTGCTCACATCTTTTGG+AGG - chr5_3:2767594-2767613 Msa0791710:CDS 45.0%
GTACTGTGTACACAACGAGG+CGG + chr5_3:2763241-2763260 None:intergenic 50.0%
GGTGTACTGTGTACACAACG+AGG + chr5_3:2763244-2763263 None:intergenic 50.0%
!!! CGCTTCTTTTTTGACGGTGG+CGG + chr5_3:2763369-2763388 None:intergenic 50.0%
GTTGGAGATTCTGTTCCCGT+TGG + chr5_3:2763672-2763691 None:intergenic 50.0%
TGAAGGATTGTGGTGAACGC+AGG + chr5_3:2763788-2763807 None:intergenic 50.0%
CGAGTGCTCTTGAAGGATTG+TGG + chr5_3:2763798-2763817 None:intergenic 50.0%
CAGAAGGTTCTGCGATGGAA+TGG - chr5_3:2764098-2764117 Msa0791710:intron 50.0%
GGTGAATGAGAGTTGGAAGG+AGG - chr5_3:2764119-2764138 Msa0791710:intron 50.0%
AATGAGAGTTGGAAGGAGGG+TGG - chr5_3:2764123-2764142 Msa0791710:intron 50.0%
TAGCAATAACGCTGTTGCCG+TGG - chr5_3:2764149-2764168 Msa0791710:intron 50.0%
GCCGGTGAAGAAGAAGAAGA+AGG + chr5_3:2764177-2764196 None:intergenic 50.0%
TTGTCGTCTACTCAGTGCTC+AGG - chr5_3:2764249-2764268 Msa0791710:intron 50.0%
! AAAGGCGGGTTTGAGATACC+AGG + chr5_3:2764324-2764343 None:intergenic 50.0%
TGGGCTGCATTACTACTCAG+CGG + chr5_3:2764953-2764972 None:intergenic 50.0%
TCCCATTGTCATCGTGTGAG+AGG + chr5_3:2764986-2765005 None:intergenic 50.0%
TGGGACAGTGTGAGTCTTTG+TGG - chr5_3:2765001-2765020 Msa0791710:intron 50.0%
GGGACAGTGTGAGTCTTTGT+GGG - chr5_3:2765002-2765021 Msa0791710:intron 50.0%
CAGTGTGAGTCTTTGTGGGA+AGG - chr5_3:2765006-2765025 Msa0791710:intron 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG - chr5_3:2765681-2765700 Msa0791710:intron 50.0%
CGAACCAATCCAAACCGCAT+TGG + chr5_3:2765746-2765765 None:intergenic 50.0%
! GACTTTTGCACTGAACCGCA+CGG + chr5_3:2766163-2766182 None:intergenic 50.0%
AATGTTAACGAGTGCCTCCG+GGG - chr5_3:2766568-2766587 Msa0791710:intron 50.0%
GTTTCCTTAACTAGTGCCCG+GGG - chr5_3:2766696-2766715 Msa0791710:intron 50.0%
CACAAGGGGGAGAAAAGCTT+GGG + chr5_3:2766874-2766893 None:intergenic 50.0%
ACACAAGGGGGAGAAAAGCT+TGG + chr5_3:2766875-2766894 None:intergenic 50.0%
GATGTGGGGATATCTGAGTG+AGG + chr5_3:2767168-2767187 None:intergenic 50.0%
AGCACGAAGCAAGGATGCAT+TGG + chr5_3:2767358-2767377 None:intergenic 50.0%
GCATCCTTGCTTCGTGCTTT+AGG - chr5_3:2767360-2767379 Msa0791710:CDS 50.0%
CAAGCCTAAAGCACGAAGCA+AGG + chr5_3:2767367-2767386 None:intergenic 50.0%
GCAGCACCACAACAGATCAA+TGG - chr5_3:2767409-2767428 Msa0791710:intron 50.0%
GAGCCTGTGGCAGATTATCT+TGG - chr5_3:2767462-2767481 Msa0791710:intron 50.0%
AGCCCAAGATAATCTGCCAC+AGG + chr5_3:2767468-2767487 None:intergenic 50.0%
GTGGCAGATTATCTTGGGCT+TGG - chr5_3:2767468-2767487 Msa0791710:intron 50.0%
ACTTCCCTGTGGGAATGAGA+CGG - chr5_3:2767491-2767510 Msa0791710:intron 50.0%
GCTAAGACCGAGAAGATCAC+GGG + chr5_3:2767541-2767560 None:intergenic 50.0%
TCTCGGTCTTAGCATGGGAT+TGG - chr5_3:2767548-2767567 Msa0791710:intron 50.0%
CTCGGTCTTAGCATGGGATT+GGG - chr5_3:2767549-2767568 Msa0791710:intron 50.0%
TAGCATGGGATTGGGTAGAG+AGG - chr5_3:2767557-2767576 Msa0791710:intron 50.0%
! GGTGGCGGTGTAGTAGAAAG+TGG + chr5_3:2763354-2763373 None:intergenic 55.0%
CGAAATCTCCCTGGAATGCC+AGG - chr5_3:2763387-2763406 Msa0791710:CDS 55.0%
TCAGCGTCTGGATCTGCGAA+CGG + chr5_3:2763577-2763596 None:intergenic 55.0%
AATCTCCAACTTCACCGGCG+AGG - chr5_3:2763682-2763701 Msa0791710:CDS 55.0%
ACAACATGCCGTGGAAGCTC+CGG - chr5_3:2763707-2763726 Msa0791710:CDS 55.0%
GGATTGTGGTGAACGCAGGA+AGG + chr5_3:2763784-2763803 None:intergenic 55.0%
AGGTCACCGAGTGCTCTTGA+AGG + chr5_3:2763805-2763824 None:intergenic 55.0%
ACGCACAGAAGGTTCTGCGA+TGG - chr5_3:2764093-2764112 Msa0791710:intron 55.0%
!! ATTTAGGGGTGTTCGCGGTG+CGG - chr5_3:2765609-2765628 Msa0791710:intron 55.0%
!! GCACGGTTCGGTTTGGTTTG+CGG + chr5_3:2766146-2766165 None:intergenic 55.0%
GCAAACCAAACCGAACCGTG+CGG - chr5_3:2766145-2766164 Msa0791710:intron 55.0%
TTGCACTGAACCGCACGGTT+CGG + chr5_3:2766158-2766177 None:intergenic 55.0%
AATGCCCCGGGCACTAGTTA+AGG + chr5_3:2766703-2766722 None:intergenic 55.0%
GGGAGAAAAGCTTGGGAGTG+GGG + chr5_3:2766867-2766886 None:intergenic 55.0%
GGGGAGAAAAGCTTGGGAGT+GGG + chr5_3:2766868-2766887 None:intergenic 55.0%
!! ATGGCGGTGACAGCCTTGTT+GGG + chr5_3:2767077-2767096 None:intergenic 55.0%
TTGGGCTTGGACTTCCCTGT+GGG - chr5_3:2767481-2767500 Msa0791710:intron 55.0%
CTTCCCTGTGGGAATGAGAC+GGG - chr5_3:2767492-2767511 Msa0791710:intron 55.0%
TTCCCTGTGGGAATGAGACG+GGG - chr5_3:2767493-2767512 Msa0791710:intron 55.0%
CCGAGAAGATCACGGGTCAT+GGG + chr5_3:2767534-2767553 None:intergenic 55.0%
CCCATGACCCGTGATCTTCT+CGG - chr5_3:2767531-2767550 Msa0791710:intron 55.0%
ACCGAGAAGATCACGGGTCA+TGG + chr5_3:2767535-2767554 None:intergenic 55.0%
CTGTGTACACAACGAGGCGG+CGG + chr5_3:2763238-2763257 None:intergenic 60.0%
TGTGTCCTCGCCGGTGAAGT+TGG + chr5_3:2763690-2763709 None:intergenic 60.0%
ACGGCATGTTGTGTCCTCGC+CGG + chr5_3:2763699-2763718 None:intergenic 60.0%
TTTCGTCGTTCGCTCGCTGC+CGG + chr5_3:2763729-2763748 None:intergenic 60.0%
TGGTGAACGCAGGAAGGCTC+AGG + chr5_3:2763778-2763797 None:intergenic 60.0%
! AGAGCACTCGGTGACCTCAC+AGG - chr5_3:2763808-2763827 Msa0791710:CDS 60.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG - chr5_3:2765619-2765638 Msa0791710:intron 60.0%
!! CTGAACCGCACGGTTCGGTT+TGG + chr5_3:2766153-2766172 None:intergenic 60.0%
GGTTCCCTTAACGAGTGCCC+CGG + chr5_3:2766588-2766607 None:intergenic 60.0%
GGGGGAGAAAAGCTTGGGAG+TGG + chr5_3:2766869-2766888 None:intergenic 60.0%
! GATGGCGGTGACAGCCTTGT+TGG + chr5_3:2767078-2767097 None:intergenic 60.0%
CTTGGGCTTGGACTTCCCTG+TGG - chr5_3:2767480-2767499 Msa0791710:intron 60.0%
TCCCTGTGGGAATGAGACGG+GGG - chr5_3:2767494-2767513 Msa0791710:intron 60.0%
GAAGATCACGGGTCATGGGC+TGG + chr5_3:2767530-2767549 None:intergenic 60.0%
! TAGTTGTACTGGCCCACCCC+AGG - chr5_3:2767666-2767685 Msa0791710:five_prime_UTR 60.0%
GGCGAGGACACAACATGCCG+TGG - chr5_3:2763698-2763717 Msa0791710:CDS 65.0%
! GGAGTGAGTGGTGGCGTAGC+CGG + chr5_3:2764195-2764214 None:intergenic 65.0%
! TGCCTCCGGGGCACTCGTTA+AGG - chr5_3:2766580-2766599 Msa0791710:intron 65.0%
! GCCTCCGGGGCACTCGTTAA+GGG - chr5_3:2766581-2766600 Msa0791710:intron 65.0%
TCCCTTAACGAGTGCCCCGG+AGG + chr5_3:2766585-2766604 None:intergenic 65.0%
CCCCCCGTCTCATTCCCACA+GGG + chr5_3:2767498-2767517 None:intergenic 65.0%
CCCTGTGGGAATGAGACGGG+GGG - chr5_3:2767495-2767514 Msa0791710:intron 65.0%
GCTCGCTGCCGGAGCTTCCA+CGG + chr5_3:2763718-2763737 None:intergenic 70.0%
! GGGGTGTTCGCGGTGCGGTT+TGG - chr5_3:2765614-2765633 Msa0791710:intron 70.0%
GCCCCCCGTCTCATTCCCAC+AGG + chr5_3:2767499-2767518 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 2763125 2767843 2763125 ID=Msa0791710;Name=Msa0791710
chr5_3 mRNA 2763125 2767843 2763125 ID=Msa0791710-mRNA-1;Parent=Msa0791710;Name=Msa0791710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=190|1|1|1|1|1|4|205|421
chr5_3 exon 2763125 2763907 2763125 ID=Msa0791710-mRNA-1:exon:1140;Parent=Msa0791710-mRNA-1
chr5_3 exon 2766698 2766891 2766698 ID=Msa0791710-mRNA-1:exon:1139;Parent=Msa0791710-mRNA-1
chr5_3 exon 2766985 2767384 2766985 ID=Msa0791710-mRNA-1:exon:1138;Parent=Msa0791710-mRNA-1
chr5_3 exon 2767560 2767843 2767560 ID=Msa0791710-mRNA-1:exon:1137;Parent=Msa0791710-mRNA-1
chr5_3 five_prime_UTR 2767654 2767843 2767654 ID=Msa0791710-mRNA-1:five_prime_utr;Parent=Msa0791710-mRNA-1
chr5_3 CDS 2767560 2767653 2767560 ID=Msa0791710-mRNA-1:cds;Parent=Msa0791710-mRNA-1
chr5_3 CDS 2766985 2767384 2766985 ID=Msa0791710-mRNA-1:cds;Parent=Msa0791710-mRNA-1
chr5_3 CDS 2766698 2766891 2766698 ID=Msa0791710-mRNA-1:cds;Parent=Msa0791710-mRNA-1
chr5_3 CDS 2763330 2763907 2763330 ID=Msa0791710-mRNA-1:cds;Parent=Msa0791710-mRNA-1
chr5_3 three_prime_UTR 2763125 2763329 2763125 ID=Msa0791710-mRNA-1:three_prime_utr;Parent=Msa0791710-mRNA-1
Gene Sequence

>Msa0791710

ATGCCAGAACCTCAGAAAAATACTTCACCACCAATGCCACTTTCTACTACACCGCCACCGTCAAAAAAGAAGCGAAATCTCCCTGGAATGCCAGATCCAGACGCTGAAGTAATCGCTTTATCACCCAAAACTTTACTAGCAACCAACCGTTTCATATGCGAGATCTGTAACAAAGGATTCCAACGGGAACAGAATCTCCAACTTCACCGGCGAGGACACAACATGCCGTGGAAGCTCCGGCAGCGAGCGAACGACGAAATCCTCCGCAAGAAAGTGTACGTTTGTCCTGAGCCTTCCTGCGTTCACCACAATCCTTCAAGAGCACTCGGTGACCTCACAGGAGTGAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAATGGAAATGTGAACGTTGTTCTAAAAAATACGCTGCGAAATGTGATTTGAAAGTTCATATGAAGAACTGTGGAACTAGAGAGTATAAATGTGATTGTGGCACTGTGTTTTCTAGGAAGGATAATTTTGTTACGCACAGAAGGTTCTGCGATGGAATGGTGAATGAGAGTTGGAAGGAGGGTGGTAGTAGCAATAACGCTGTTGCCGTGGTTCCTTCTTCTTCTTCTTCACCGGCTACGCCACCACTCACTCCATCAACAATATCATCAGTGATGGTGTCTCCTACTTTGTCGTCTACTCAGTGCTCAGACATTGCAGAAAACCCAACAAGGCTGTCACCGCCATCTTCAAACGCTTCTACTTCTACTTCTACTAGCTGTTGTTCTTCTTTCAGCAGTCTCATGTCAAGCTTGCCTCACTCAGATATCCCCACATCTTTCTCTATCACAGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACAACAATGATCACCCTTTTCCCCATTACAAAACTGCATCTCCACAACCTGTATTATCTGCTACTGCATTACTCCAAAAAGCTGCTCAAGTGGGTTCATCTTCATCCAATGCATCCTTGCTTCGTGCTTTAGGCTTGAAAGACAACAGTGTCAGTATTAGCAGCACCACAACAGATCAATGGAATAACCATGGTCATGTAAAACAAGAGAATGAGCCTGTGGCAGATTATCTTGGGCTTGGACTTCCCTGTGGGAATGAGACGGGGGGCTCATCGAACCAGCCCATGACCCGTGATCTTCTCGGTCTTAGCATGGGATTGGGTAGAGAGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTCGATTCACCTGCATAG
Protein sequence

>Msa0791710

MPEPQKNTSPPMPLSTTPPPSKKKRNLPGMPDPDAEVIALSPKTLLATNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRANDEILRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAAKCDLKVHMKNCGTREYKCDCGTVFSRKDNFVTHRRFCDGMVNESWKEGGSSNNAVAVVPSSSSSPATPPLTPSTISSVMVSPTLSSTQCSDIAENPTRLSPPSSNASTSTSTSCCSSFSSLMSSLPHSDIPTSFSITEPTTLSLFTPLYLSNNNNNDHPFPHYKTASPQPVLSATALLQKAAQVGSSSSNASLLRALGLKDNSVSISSTTTDQWNNHGHVKQENEPVADYLGLGLPCGNETGGSSNQPMTRDLLGLSMGLGREDDDLSALLTSFGGNFDSPA*